Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013501
(1064 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533114.2| PREDICTED: similar to Cdc42 effector protein 4 ... 252 3e-78
Alignment gi|XP_538388.2| PREDICTED: similar to CDC42 effector protein (R... 66 5e-11
Alignment gi|XP_854183.1| PREDICTED: similar to CDC42 effector protein 5 ... 60 3e-09
Alignment gi|XP_540865.1| PREDICTED: similar to Cdc42 effector protein 2 ... 50 4e-06
>ref|XP_533114.2| PREDICTED: similar to Cdc42 effector protein 4 [Canis familiaris].
Length = 352
Score = 252 bits (643), Expect(2) = 3e-78
Identities = 141/214 (65%), Positives = 143/214 (66%), Gaps = 1/214 (0%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 607
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DGESLDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 608 QLNEKEAAEXXXXXXXXXXXXXXXXXXXX-EGSPEEAGVEEAVPRRNGAAAPHSPDPLLD 784
QLNEKEAAE EG EEAG E PRRNGAAAPHSPDPLLD
Sbjct: 121 QLNEKEAAEKGSGKLPKSLSSSPVKKASAGEGGQEEAGEGELGPRRNGAAAPHSPDPLLD 180
Query: 785 EQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
EQAFGDLT+LP+VPKA GLKHAESIMSFHIDLG
Sbjct: 181 EQAFGDLTELPVVPKAGLGLKHAESIMSFHIDLG 214
Score = 59.3 bits (142), Expect(2) = 3e-78
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3
Query: 885 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 977
GPSMLGDVLSIMDKEEWEA +EDGGY D D
Sbjct: 214 GPSMLGDVLSIMDKEEWEADDEDGGYRDDGD 244
>ref|XP_538388.2| PREDICTED: similar to CDC42 effector protein (Rho GTPase binding) 1
[Canis familiaris].
Length = 164
Score = 66.2 bits (160), Expect = 5e-11
Identities = 44/109 (40%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXXXX 490
LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 33 LTADMISPPLGDFRHTMHVGRGGDVFGDTSFLSNHGGS--------------SGGTHRSP 78
Query: 491 XXXXXXXXQSVTRGDREQRDMLGSLRDS------ALFVKNAMSLPQLNE 619
Q V R R M S + +KNA+SLPQLN+
Sbjct: 79 RSFLAKKLQQVRRVGAPPRRMASPPAPSPAPPAISPIIKNAISLPQLNQ 127
>ref|XP_854183.1| PREDICTED: similar to CDC42 effector protein 5 [Canis familiaris].
Length = 153
Score = 60.5 bits (145), Expect = 3e-09
Identities = 32/58 (55%), Positives = 36/58 (62%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLG
Animal-Genome cDNA 20110601C-013501
Animal-Genome cDNA 20110601C-013501
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013501
(1064 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039936.1| cdc42 effector protein 4 [Bos taurus]. 241 7e-72
Alignment gi|NP_001068963.1| cdc42 effector protein 1 [Bos taurus]. 65 8e-11
Alignment gi|XP_002695438.1| PREDICTED: CDC42 effector protein (Rho GTPas... 62 9e-10
Alignment gi|XP_002695437.1| PREDICTED: CDC42 effector protein (Rho GTPas... 62 9e-10
Alignment gi|NP_001068809.1| cdc42 effector protein 2 [Bos taurus]. 54 3e-07
Alignment gi|NP_001039909.1| cdc42 effector protein 3 [Bos taurus]. 49 1e-05
>ref|NP_001039936.1| cdc42 effector protein 4 [Bos taurus].
Length = 347
Score = 241 bits (615), Expect(2) = 7e-72
Identities = 138/215 (64%), Positives = 142/215 (66%), Gaps = 2/215 (0%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 428 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMS 601
QSVTR DREQRD+LGSLRDSALFVKNAMS
Sbjct: 61 DGESVDEQAPSSSSSSKRSLLSRKFRASKRSQSVTRSDREQRDVLGSLRDSALFVKNAMS 120
Query: 602 LPQLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLL 781
LPQLNEKEAAE EGS +EEA P RNGAAAPHSPDPLL
Sbjct: 121 LPQLNEKEAAEKGSSKLPKSLSSSPVKKASAEGS-----LEEAAPPRNGAAAPHSPDPLL 175
Query: 782 DEQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
+EQAFGDL DLP+VPKASFGLKHAESIMSFHIDLG
Sbjct: 176 EEQAFGDLADLPMVPKASFGLKHAESIMSFHIDLG 210
Score = 48.9 bits (115), Expect(2) = 7e-72
Identities = 24/34 (70%), Positives = 27/34 (79%), Gaps = 3/34 (8%)
Frame = +3
Query: 885 GPSMLGDVLSIMDK-EEWEAQ--EEDGGYHGDDD 977
GPSMLGDVLS+MDK EWE + +DGGYHGD D
Sbjct: 210 GPSMLGDVLSVMDKGGEWEPEGAPDDGGYHGDGD 243
>ref|NP_001068963.1| cdc42 effector protein 1 [Bos taurus].
Length = 361
Score = 65.5 bits (158), Expect = 8e-11
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 421
LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 33 LTADMISPPLGDFRHTMHVGRGGDVFGDTSFLSNHGG 69
>ref|XP_002695438.1| PREDICTED: CDC42 effector protein (Rho GTPase binding) 5-like
isoform 2 [Bos taurus].
Length = 153
Score = 62.0 bits (149), Expect = 9e-10
Identities = 3DFRHTMHVGRAGDAFGDTSFLNSKAG 421
MP+LKQL + ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----ERGTLSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|XP_540865.1| PREDICTED: similar to Cdc42 effector protein 2 [Canis familiaris].
Length = 214
Score = 50.1 bits (118), Expect = 4e-06
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSK 415
L+++MIS PLGDFRHT+H+G G D FGD SFL K
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGK 61
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,303,705
Number of extensions: 984216
Number of successful extensions: 4557
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4543
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
3/58 (56%), Positives = 37/58 (63%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 421
MP+LKQL + A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----ERGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|XP_002695437.1| PREDICTED: CDC42 effector protein (Rho GTPase binding) 5-like
isoform 1 [Bos taurus].
Length = 153
Score = 62.0 bits (149), Expect = 9e-10
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 421
MP+LKQL + A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----ERGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|NP_001068809.1| cdc42 effector protein 2 [Bos taurus].
Length = 210
Score = 53.5 bits (127), Expect = 3e-07
Identities = 58/194 (29%), Positives = 76/194 (39%), Gaps = 2/194 (1%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXX 484
L+++MIS PLGDFRHT+H+G G D FGD SFL K L
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGNDTFGDISFLQGKFHLL--------PGTAVDETQED 76
Query: 485 XXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEXXXXXXXXXX 664
++ T RE D L +KNA+SLP + +A
Sbjct: 77 SGFEMPFQFTRTATLCGRELPDGPSPL------LKNAISLPVIGGPQA--LTLPAAQAPP 128
Query: 665 XXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDEQAFGDLTDLPIVPKASFGL 844
+ SP+EAG + V R A A HS E + P L
Sbjct: 129 KPPRLHLETPQASPQEAGTVD-VWRIPEAGAAHS------ELTTESGAEEPF-------L 174
Query: 845 KHAESIMSFHIDLG 886
HA S++S H+DLG
Sbjct: 175 SHASSLLSLHVDLG 188
>ref|NP_001039909.1| cdc42 effector protein 3 [Bos taurus].
Length = 254
Score = 48.5 bits (114), Expect = 1e-05
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFL 406
L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,632,917
Number of extensions: 941417
Number of successful extensions: 4662
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4645
Number of HSP's successfully gapped: 7
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013501
(1064 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358042.1| PREDICTED: cdc42 effector protein 4-like iso... 276 3e-89
Alignment gi|XP_003131291.1| PREDICTED: cdc42 effector protein 4-like iso... 276 3e-89
Alignment gi|XP_003358041.1| PREDICTED: cdc42 effector protein 4-like iso... 276 3e-89
Alignment gi|XP_003131290.1| PREDICTED: cdc42 effector protein 4-like iso... 276 3e-89
Alignment gi|XP_003127481.2| PREDICTED: cdc42 effector protein 5-like [Su... 62 5e-10
Alignment gi|XP_003122586.1| PREDICTED: cdc42 effector protein 2-like [Su... 54 2e-07
Alignment gi|XP_003125272.1| PREDICTED: cdc42 effector protein 3-like iso... 49 6e-06
>ref|XP_003358042.1| PREDICTED: cdc42 effector protein 4-like isoform 2 [Sus scrofa].
Length = 357
Score = 276 bits (707), Expect(2) = 3e-89
Identities = 151/213 (70%), Positives = 151/213 (70%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 607
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DSESMDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 608 QLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 787
QLNEKEAAE EGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE
Sbjct: 121 QLNEKEAAEKGSSKLPKSLSSSPVKKASGEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 180
Query: 788 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG
Sbjct: 181 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 213
Score = 70.9 bits (172), Expect(2) = 3e-89
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 885 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 977
GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD
Sbjct: 213 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 243
>ref|XP_003131291.1| PREDICTED: cdc42 effector protein 4-like isoform 1 [Sus scrofa].
Length = 357
Score = 276 bits (707), Expect(2) = 3e-89
Identities = 151/213 (70%), Positives = 151/213 (70%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 607
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DSESMDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 608 QLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 787
QLNEKEAAE EGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE
Sbjct: 121 QLNEKEAAEKGSSKLPKSLSSSPVKKASGEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 180
Query: 788 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG
Sbjct: 181 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 213
Score = 70.9 bits (172), Expect(2) = 3e-89
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 885 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 977
GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD
Sbjct: 213 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 243
>ref|XP_003358041.1| PREDICTED: cdc42 effector protein 4-like isoform 2 [Sus scrofa].
Length = 357
Score = 276 bits (707), Expect(2) = 3e-89
Identities = 151/213 (70%), Positives = 151/213 (70%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 607
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DSESMDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 608 QLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 787
QLNEKEAAE EGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE
Sbjct: 121 QLNEKEAAEKGSSKLPKSLSSSPVKKASGEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 180
Query: 788 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG
Sbjct: 181 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 213
Score = 70.9 bits (172), Expect(2) = 3e-89
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 885 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 977
GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD
Sbjct: 213 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 243
>ref|XP_003131290.1| PREDICTED: cdc42 effector protein 4-like isoform 1 [Sus scrofa].
Length = 357
Score = 276 bits (707), Expect(2) = 3e-89
Identities = 151/213 (70%), Positives = 151/213 (70%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 607
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DSESMDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 608 QLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 787
QLNEKEAAE EGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE
Sbjct: 121 QLNEKEAAEKGSSKLPKSLSSSPVKKASGEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 180
Query: 788 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG
Sbjct: 181 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 213
Score = 70.9 bits (172), Expect(2) = 3e-89
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 885 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 977
GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD
Sbjct: 213 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDDD 243
>ref|XP_003127481.2| PREDICTED: cdc42 effector protein 5-like [Sus scrofa].
Length = 153
Score = 62.0 bits (149), Expect = 5e-10
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 421
MP+LKQL + A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----ERGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|XP_003122586.1| PREDICTED: cdc42 effector protein 2-like [Sus scrofa].
Length = 214
Score = 53.5 bits (127), Expect = 2e-07
Identities = 54/198 (27%), Positives = 76/198 (38%), Gaps = 6/198 (3%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXX 484
L+++MIS PLGDFRHT+H+G G D FGD SFL K L
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLL--------PGTAIEEGEED 76
Query: 485 XXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEA--AEXXXXXXXX 658
++ T RE D L +KNA+SLP + +A
Sbjct: 77 GSFELPFQFTRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTLPTAQAPPKP 130
Query: 659 XXXXXXXXXXXXEGSPEEAGVEE--AVPRRNGAAAPHSPDPLLDEQAFGDLTDLPIVPKA 832
+ SP+EAG + +P A + +P+ +E
Sbjct: 131 PRLHLETPQPSPQPSPQEAGCVDIWRIPEAGSAHSGLTPESGAEEPF------------- 177
Query: 833 SFGLKHAESIMSFHIDLG 886
L HA S++S H+DLG
Sbjct: 178 ---LSHASSLLSLHVDLG 192
>ref|XP_003125272.1| PREDICTED: cdc42 effector protein 3-like isoform 1 [Sus scrofa].
Length = 254
Score = 48.5 bits (114), Expect = 6e-06
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFL 406
L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,822,841
Number of extensions: 615948
Number of successful extensions: 3122
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3072
Number of HSP's successfully gapped: 11
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013501
(1064 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156818.1| cdc42 effector protein 4 [Mus musculus]. 223 3e-65
Alignment gi|NP_064390.1| cdc42 effector protein 4 [Mus musculus]. 223 3e-65
Alignment gi|NP_081495.1| cdc42 effector protein 1 [Mus musculus]. 66 4e-11
Alignment gi|NP_067429.1| cdc42 effector protein 5 [Mus musculus]. 63 4e-10
Alignment gi|NP_081048.1| cdc42 effector protein 2 [Mus musculus]. 56 4e-08
Alignment gi|NP_080790.1| cdc42 effector protein 3 [Mus musculus]. 49 9e-06
>ref|NP_001156818.1| cdc42 effector protein 4 [Mus musculus].
Length = 349
Score = 223 bits (567), Expect(2) = 3e-65
Identities = 129/214 (60%), Positives = 134/214 (62%), Gaps = 1/214 (0%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFL SKA E
Sbjct: 1 MPILKQLVSSSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLTSKAREA 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 607
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DDESLDEQASASKLSLLSRKFRGSKRS--QSVTRGDREQRDMLGSLRDSALFVKNAMSLP 118
Query: 608 QLNEKEAAEXXXXXXXXXXXXXXXXXXXX-EGSPEEAGVEEAVPRRNGAAAPHSPDPLLD 784
QLNEKEAAE +G P+ P RNGA PHSPDPLLD
Sbjct: 119 QLNEKEAAEKDSSKLPKSLSSSPVKKADARDGGPKS-------PHRNGATGPHSPDPLLD 171
Query: 785 EQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
EQAFGDL DLPI+PK S+GLKHAESI+SFHIDLG
Sbjct: 172 EQAFGDLMDLPIMPKVSYGLKHAESILSFHIDLG 205
Score = 45.1 bits (105), Expect(2) = 3e-65
Identities = 21/28 (75%), Positives = 24/28 (85%), Gaps = 2/28 (7%)
Frame = +3
Query: 885 GPSMLGDVLSIMDKEEW--EAQEEDGGY 962
GPSMLGDVLSIMDK++W E +EE GGY
Sbjct: 205 GPSMLGDVLSIMDKDQWGSEEEEEAGGY 232
>ref|NP_064390.1| cdc42 effector protein 4 [Mus musculus].
Length = 349
Score = 223 bits (567), Expect(2) = 3e-65
Identities = 129/214 (60%), Positives = 134/214 (62%), Gaps = 1/214 (0%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFL SKA E
Sbjct: 1 MPILKQLVSSSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLTSKAREA 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 607
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DDESLDEQASASKLSLLSRKFRGSKRS--QSVTRGDREQRDMLGSLRDSALFVKNAMSLP 118
Query: 608 QLNEKEAAEXXXXXXXXXXXXXXXXXXXX-EGSPEEAGVEEAVPRRNGAAAPHSPDPLLD 784
QLNEKEAAE +G P+ P RNGA PHSPDPLLD
Sbjct: 119 QLNEKEAAEKDSSKLPKSLSSSPVKKADARDGGPKS-------PHRNGATGPHSPDPLLD 171
Query: 785 EQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
EQAFGDL DLPI+PK S+GLKHAESI+SFHIDLG
Sbjct: 172 EQAFGDLMDLPIMPKVSYGLKHAESILSFHIDLG 205
Score = 45.1 bits (105), Expect(2) = 3e-65
Identities = 21/28 (75%), Positives = 24/28 (85%), Gaps = 2/28 (7%)
Frame = +3
Query: 885 GPSMLGDVLSIMDKEEW--EAQEEDGGY 962
GPSMLGDVLSIMDK++W E +EE GGY
Sbjct: 205 GPSMLGDVLSIMDKDQWGSEEEEEAGGY 232
>ref|NP_081495.1| cdc42 effector protein 1 [Mus musculus].
Length = 409
Score = 66.2 bits (160), Expect = 4e-11
Identities = 44/109 (40%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXXXX 490
LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 33 LTADMISPPLGDFRHTMHVGRGGDVFGDTSFLSNHGGR--------------SGNTHRSP 78
Query: 491 XXXXXXXXQSVTRGDREQRDMLGSLRDS------ALFVKNAMSLPQLNE 619
Q V R R M S + +KNA+SLPQLN+
Sbjct: 79 RSFLARKLQQVRRVGVPPRRMASPAAPSPAPPPISPIIKNAISLPQLNQ 127
>ref|NP_067429.1| cdc42 effector protein 5 [Mus musculus].
Length = 150
Score = 62.8 bits (151), Expect = 4e-10
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 421
MP++KQL D A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVMKQLGPAQPKKRL----DRGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|NP_081048.1| cdc42 effector protein 2 [Mus musculus].
Length = 214
Score = 56.2 bits (134), Expect = 4e-08
Identities = 57/198 (28%), Positives = 74/198 (37%), Gaps = 6/198 (3%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXX 484
L+++MIS PLGDFRHT+H+G G D FGD SFL K L
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGDDMFGDISFLQGKFHLL--------PGTAVEEAEED 76
Query: 485 XXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEXXXXXXXXXX 664
++ T RE D L L +KNA+SLP + +A
Sbjct: 77 GSFDLPFQFTRTTTVCGRELPDGLSPL------LKNAISLPVIGGPQALTLPTAQAPPKP 130
Query: 665 XXXXXXXXXXEGSPEEAGVEEA-VPRRNGAAAPH---SPDPLLDEQAFGDLTDLPIVPKA 832
P G V R A +PH SP+P +E
Sbjct: 131 PRLHLESPQPSPQPSPQGAGNVDVWRIPEAGSPHNGMSPEPEAEEPF------------- 177
Query: 833 SFGLKHAESIMSFHIDLG 886
L HA S++S H+DLG
Sbjct: 178 ---LSHASSLLSLHVDLG 192
>ref|NP_080790.1| cdc42 effector protein 3 [Mus musculus].
Length = 254
Score = 48.5 bits (114), Expect = 9e-06
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFL 406
L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,518,617
Number of extensions: 757495
Number of successful extensions: 3430
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3406
Number of HSP's successfully gapped: 10
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013501
(1064 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036253.2| cdc42 effector protein 4 [Homo sapiens]. 257 1e-79
Alignment gi|NP_689449.1| cdc42 effector protein 1 [Homo sapiens]. 65 1e-10
Alignment gi|NP_659494.2| cdc42 effector protein 5 [Homo sapiens]. 64 3e-10
Alignment gi|NP_006770.1| cdc42 effector protein 2 [Homo sapiens]. 50 4e-06
>ref|NP_036253.2| cdc42 effector protein 4 [Homo sapiens].
Length = 356
Score = 257 bits (657), Expect(2) = 1e-79
Identities = 142/214 (66%), Positives = 146/214 (68%), Gaps = 1/214 (0%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 427
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGE
Sbjct: 1 MPILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEP 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 607
QSVTRG+REQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLP 120
Query: 608 QLNEKEAAEXXXXXXXXXXXXXXXXXXXX-EGSPEEAGVEEAVPRRNGAAAPHSPDPLLD 784
QLNEKEAAE EG EEAG EEAVPRRNGAA PHSPDPLLD
Sbjct: 121 QLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLD 180
Query: 785 EQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLG 886
EQAFGDLTDLP+VPKA++GLKHAESIMSFHIDLG
Sbjct: 181 EQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLG 214
Score = 58.5 bits (140), Expect(2) = 1e-79
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +3
Query: 885 GPSMLGDVLSIMDKEEWEAQEEDGGYHGDD 974
GPSMLGDVLSIMDKEEW+ +E +GGYHGD+
Sbjct: 214 GPSMLGDVLSIMDKEEWDPEEGEGGYHGDE 243
>ref|NP_689449.1| cdc42 effector protein 1 [Homo sapiens].
Length = 391
Score = 65.1 bits (157), Expect = 1e-10
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 421
LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 33 LTADMISHPLGDFRHTMHVGRGGDVFGDTSFLSNHGG 69
>ref|NP_659494.2| cdc42 effector protein 5 [Homo sapiens].
Length = 148
Score = 63.5 bits (153), Expect = 3e-10
Identities = 34/58 (58%), Positives = 37/58 (63%)
Frame = +2
Query: 248 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 421
MP+LKQL D A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----DRGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|NP_006770.1| cdc42 effector protein 2 [Homo sapiens].
Length = 210
Score = 50.1 bits (118), Expect = 4e-06
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Frame = +2
Query: 311 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSK 415
L+++MIS PLGDFRHT+H+G G D FGD SFL K
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGK 61
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,212,141
Number of extensions: 936775
Number of successful extensions: 4385
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4357
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013501
(1064 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1639 0.0
Sscrofa_Chr05 66 4e-08
>Sscrofa_Chr12
|| Length = 63588571
Score = 1639 bits (827), Expect = 0.0
Identities = 889/914 (97%), Gaps = 2/914 (0%)
Strand = Plus / Plus
Query: 147 cagccttatgatcacctccttatcgccccctccacccgccggacttcagatctgacccca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937678 cagccttatgatcacctccttatcgccccctccacccgccggacttcagatctgacccca 7937737
Query: 207 gatccacctgttgcttagagggacccctcccctccggcaagatgccgatcctcaagcagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937738 gatccacctgttgcttagagggacccctcccctccggcaagatgccgatcctcaagcagc 7937797
Query: 267 tggtgtccagctccgtacactccaagcgtcgctcccgagtggacctcacggctgagatga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937798 tggtgtccagctccgtacactccaagcgtcgctcccgagtggacctcacggctgagatga 7937857
Query: 327 tcagtgccccgctgggtgacttccgccacaccatgcacgtgggccgggcgggggacgcct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937858 tcagtgccccgctgggtgacttccgccacaccatgcacgtgggccgggcgggggacgcct 7937917
Query: 387 ttggggacacttcctttctcaacagcaaggccggggagctggacagtgagtccatggacg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937918 ttggggacacttcctttctcaacagcaaggccggggagctggacagtgagtccatggacg 7937977
Query: 447 agcaggcctcctcctcgtcctctaaacgcagcctcctctcccggaagttccggggcagca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937978 agcaggcctcctcctcgtcctctaaacgcagcctcctctcccggaagttccggggcagca 7938037
Query: 507 agcggtcgcagtcagtgaccaggggggaccgggagcagagggacatgctgggctccctgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938038 agcggtcgcagtcagtgaccaggggggaccgggagcagagggacatgctgggctccctgc 7938097
Query: 567 gggactcggccctcttcgtcaagaatgccatgtccctgccccagctgaacgagaaggagg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938098 gggactcggccctcttcgtcaagaatgccatgtccctgccccagctgaacgagaaggagg 7938157
Query: 627 ccgcagagaagggctccagcaagctccccaagagcctgtcgtccagccccgtgaagaagg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938158 ccgcagagaagggctccagcaagctccccaagagcctgtcgtccagccccgtgaagaagg 7938217
Query: 687 ccagcggggagggcagcccggaggaggcgggcgtggaggaggccgtgccccggcggaacg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938218 ccagcggggagggcagcccggaggaggcgggcgtggaggaggccgtgccccggcggaacg 7938277
Query: 747 gggctgccgnnnnnnnnnnnnnnnnnnnnntcctcgacgagcaggccttcggggacctga 806
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7938278 gggctgccgccccccactccccagaccccctcctcgacgagcaggccttcggggacctga 7938337
Query: 807 cggatctgcccatcgtgcccaaggccagcttcgggctgaagcacgccgagtccatcatgt 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938338 cggatctgcccatcgtgcccaaggccagcttcgggctgaagcacgccgagtccatcatgt 7938397
Query: 867 ctttccacatcgacctgggggccctccatgctgggcgatgtcctcagcatcatggacaag 926
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938398 ctttccacatcgacct-ggggccctccatgctgggcgatgtcctcagcatcatggacaag 7938456
Query: 927 gaggagtgggaagcccaggaggaggatggcggttaccatggtgacgatgacccagcaggc 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938457 gaggagtgggaagcccaggaggaggatggcggttaccatggtgacgatgacccagcaggc 7938516
Query: 987 agcccctcccaggctccaccttcggcgtcagcccctcccctgggca-gccggaaggcgag 1045
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 7938517 agcccctcccaggctccaccttcggcgtcagcccctcccctggcaaggccggaaggcgag 7938576
Query: 1046 gggggcccggactt 1059
||||||||||||||
Sbjct: 7938577 gggggcccggactt 7938590
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 gtgtccgagcggctccctgccctgaaagctggagcccgaggaaacagacgccggcgcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7918371 gtgtccgagcggctccctgccctgaaagctggagcccgaggaaacagacgccggcgcgga 7918430
Query: 61 catgggccgccagccccgccgcctcgcggagcccaccgaggggacagcgcagccgcgccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7918431 catgggccgccagccccgccgcctcgcggagcccaccgaggggacagcgcagccgcgccg 7918490
Query: 121 gctcggcgctcgcgtctctggggacccag 149
|||||||||||||||||||||||||||||
Sbjct: 7918491 gctcggcgctcgcgtctctggggacccag 7918519
>Sscrofa_Chr05
|| Length = 111506441
Score = 65.9 bits (33), Expect = 4e-08
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 323 atgatcagtgccccgctgggtgacttccgccacaccatgcacgtgggccgggcgggggac 382
|||||||| |||| || || ||||||||||||||||||||||||||||| | ||||||
Sbjct: 7805871 atgatcagcccccccctcggggacttccgccacaccatgcacgtgggccgcggcggggac 7805812
Query: 383 gcctttggggacacttcctttctca 407
| ||| || ||||| ||||| ||||
Sbjct: 7805811 gtcttcggcgacacctccttcctca 7805787
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,484,388
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 4
Length of query: 1064
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1043
Effective length of database: 2,808,413,156
Effective search space: 2929174921708
Effective search space used: 2929174921708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)