Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013502
(952 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039936.1| cdc42 effector protein 4 [Bos taurus]. 290 2e-78
Alignment gi|NP_001068809.1| cdc42 effector protein 2 [Bos taurus]. 72 9e-13
Alignment gi|NP_001068963.1| cdc42 effector protein 1 [Bos taurus]. 71 2e-12
Alignment gi|XP_002695438.1| PREDICTED: CDC42 effector protein (Rho GTPas... 62 7e-10
Alignment gi|XP_002695437.1| PREDICTED: CDC42 effector protein (Rho GTPas... 62 7e-10
Alignment gi|NP_001039909.1| cdc42 effector protein 3 [Bos taurus]. 49 8e-06
>ref|NP_001039936.1| cdc42 effector protein 4 [Bos taurus].
Length = 347
Score = 290 bits (741), Expect = 2e-78
Identities = 164/254 (64%), Positives = 172/254 (67%), Gaps = 5/254 (1%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 386 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMS 559
QSVTR DREQRD+LGSLRDSALFVKNAMS
Sbjct: 61 DGESVDEQAPSSSSSSKRSLLSRKFRASKRSQSVTRSDREQRDVLGSLRDSALFVKNAMS 120
Query: 560 LPQLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLL 739
LPQLNEKEAAE EGS +EEA P RNGAAAPHSPDPLL
Sbjct: 121 LPQLNEKEAAEKGSSKLPKSLSSSPVKKASAEGS-----LEEAAPPRNGAAAPHSPDPLL 175
Query: 740 DEQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDK-EEWEAQ--EED 910
+EQAFGDL DLP+VPKASFGLKHAESIMSFHIDLGPSMLGDVLS+MDK EWE + +D
Sbjct: 176 EEQAFGDLADLPMVPKASFGLKHAESIMSFHIDLGPSMLGDVLSVMDKGGEWEPEGAPDD 235
Query: 911 GGYHGDDDPAGSPS 952
GGYHGD DPA P+
Sbjct: 236 GGYHGDGDPAAIPA 249
>ref|NP_001068809.1| cdc42 effector protein 2 [Bos taurus].
Length = 210
Score = 71.6 bits (174), Expect = 9e-13
Identities = 67/208 (32%), Positives = 88/208 (42%), Gaps = 2/208 (0%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXX 442
L+++MIS PLGDFRHT+H+G G D FGD SFL K L
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGNDTFGDISFLQGKFHLL--------PGTAVDETQED 76
Query: 443 XXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEXXXXXXXXXX 622
++ T RE D L +KNA+SLP + +A
Sbjct: 77 SGFEMPFQFTRTATLCGRELPDGPSPL------LKNAISLPVIGGPQA--LTLPAAQAPP 128
Query: 623 XXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDEQAFGDLTDLPIVPKASFGL 802
Animal-Genome cDNA 20110601C-013502
Animal-Genome cDNA 20110601C-013502
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013502
(952 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533114.2| PREDICTED: similar to Cdc42 effector protein 4 ... 305 3e-83
Alignment gi|XP_540865.1| PREDICTED: similar to Cdc42 effector protein 2 ... 67 2e-11
Alignment gi|XP_538388.2| PREDICTED: similar to CDC42 effector protein (R... 66 4e-11
Alignment gi|XP_854183.1| PREDICTED: similar to CDC42 effector protein 5 ... 60 2e-09
Alignment gi|XP_532935.1| PREDICTED: similar to Cdc42 effector protein 3 ... 49 9e-06
>ref|XP_533114.2| PREDICTED: similar to Cdc42 effector protein 4 [Canis familiaris].
Length = 352
Score = 305 bits (782), Expect = 3e-83
Identities = 167/246 (67%), Positives = 170/246 (69%), Gaps = 1/246 (0%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 386 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 565
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DGESLDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 566 QLNEKEAAEXXXXXXXXXXXXXXXXXXXX-EGSPEEAGVEEAVPRRNGAAAPHSPDPLLD 742
QLNEKEAAE EG EEAG E PRRNGAAAPHSPDPLLD
Sbjct: 121 QLNEKEAAEKGSGKLPKSLSSSPVKKASAGEGGQEEAGEGELGPRRNGAAAPHSPDPLLD 180
Query: 743 EQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYH 922
EQAFGDLT+LP+VPKA GLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEA +EDGGY
Sbjct: 181 EQAFGDLTELPVVPKAGLGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEADDEDGGYR 240
Query: 923 GDDDPA 940
D D A
Sbjct: 241 DDGDAA 246
>ref|XP_540865.1| PREDICTED: similar to Cdc42 effector protein 2 [Canis familiaris].
Length = 214
Score = 67.0 bits (162), Expect = 2e-11
Identities = 63/219 (28%), Positives = 87/219 (39%), Gaps = 13/219 (5%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXX 442
L+++MIS PLGDFRHT+H+G G D FGD SFL K L
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLL--------PGTVVEGPEED 76
Query: 443 XXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEXXXXXXXXXX 622
++ T RE D L +KNA+SLP + +A
Sbjct: 77 GSLDLPFQFTRTGTLCGRELPDGPSPL------LKNAISLPVIGGPQA------------ 118
Query: 623 XXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDEQAFGDLTDLPIVPKASFG- 799
+ P+ + +P+ SP P E D+ +P G
Sbjct: 119 ----LTLPTTQAPPKPPRLHLEIPQ-------PSPQPSPQEAGSVDIWRIPEAGSVHNGL 167
Query: 800 ----------LKHAESIMSFHIDLGPSMLGDVLSIM + SP+EAG + V R A A HS E + P L
Sbjct: 129 KPPRLHLETPQASPQEAGTVD-VWRIPEAGAAHS------ELTTESGAEEPF-------L 174
Query: 803 KHAESIMSFHIDLGPSMLGDVLSIMDKE 886
HA S++S H+DLGPS+L DVL IMD++
Sbjct: 175 SHASSLLSLHVDLGPSILDDVLQIMDQD 202
>ref|NP_001068963.1| cdc42 effector protein 1 [Bos taurus].
Length = 361
Score = 70.9 bits (172), Expect = 2e-12
Identities = 71/235 (30%), Positives = 94/235 (40%), Gaps = 8/235 (3%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXXXX 448
LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 33 LTADMISPPLGDFRHTMHVGRGGDVFGDTSFLSNHGG--------------GSGSTHRSP 78
Query: 449 XXXXXXXXQSVTRGDREQRDMLGSLRDS------ALFVKNAMSLPQLNEKEAAEXXXXXX 610
Q V R R M S + +KNA+SLPQLN +AA
Sbjct: 79 RGFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAISLPQLN--QAAYDSLVVG 136
Query: 611 XXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDEQAFGDLTDLPIVPKA 790
+ G++ + P P + +F P P+
Sbjct: 137 KLSFDRSPASSTDGHSA---YGLDSGFCTISRLPRPEKPRDRDRDSSF------PAEPE- 186
Query: 791 SFGLKHAESIMSFH--IDLGPSMLGDVLSIMDKEEWEAQEEDGGYHGDDDPAGSP 949
L+ ++S++SF +DLGPS+L ++L M E A E PA SP
Sbjct: 187 ---LRRSDSLLSFRLDLDLGPSLLTELLGAMSLSEGSAAETPA-----PAPAASP 233
>ref|XP_002695438.1| PREDICTED: CDC42 effector protein (Rho GTPase binding) 5-like
isoform 2 [Bos taurus].
Length = 153
Score = 62.0 bits (149), Expect = 7e-10
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 379
MP+LKQL + A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----ERGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|XP_002695437.1| PREDICTED: CDC42 effector protein (Rho GTPase binding) 5-like
isoform 1 [Bos taurus].
Length = 153
Score = 62.0 bits (149), Expect = 7e-10
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 379
MP+LKQL + A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----ERGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|NP_001039909.1| cdc42 effector protein 3 [Bos taurus].
Length = 254
Score = 48.5 bits (114), Expect = 8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFL 364
L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,689,576
Number of extensions: 891950
Number of successful extensions: 4330
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4313
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
DKE 886
L HA S++S H+DLGPS+L DVL IMD++
Sbjct: 168 TPELGAEEPFLSHASSLLSLHVDLGPSILDDVLQIMDQD 206
>ref|XP_538388.2| PREDICTED: similar to CDC42 effector protein (Rho GTPase binding) 1
[Canis familiaris].
Length = 164
Score = 66.2 bits (160), Expect = 4e-11
Identities = 44/109 (40%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXXXX 448
LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 33 LTADMISPPLGDFRHTMHVGRGGDVFGDTSFLSNHGGS--------------SGGTHRSP 78
Query: 449 XXXXXXXXQSVTRGDREQRDMLGSLRDS------ALFVKNAMSLPQLNE 577
Q V R R M S + +KNA+SLPQLN+
Sbjct: 79 RSFLAKKLQQVRRVGAPPRRMASPPAPSPAPPAISPIIKNAISLPQLNQ 127
>ref|XP_854183.1| PREDICTED: similar to CDC42 effector protein 5 [Canis familiaris].
Length = 153
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/58 (55%), Positives = 36/58 (62%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 379
MP+LKQL + ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----ERGTLSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|XP_532935.1| PREDICTED: similar to Cdc42 effector protein 3 [Canis familiaris].
Length = 253
Score = 48.5 bits (114), Expect = 9e-06
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFL 364
L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,225,103
Number of extensions: 933626
Number of successful extensions: 4219
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4205
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013502
(952 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358042.1| PREDICTED: cdc42 effector protein 4-like iso... 353 1e-97
Alignment gi|XP_003131291.1| PREDICTED: cdc42 effector protein 4-like iso... 353 1e-97
Alignment gi|XP_003358041.1| PREDICTED: cdc42 effector protein 4-like iso... 353 1e-97
Alignment gi|XP_003131290.1| PREDICTED: cdc42 effector protein 4-like iso... 353 1e-97
Alignment gi|XP_003122586.1| PREDICTED: cdc42 effector protein 2-like [Su... 72 6e-13
Alignment gi|XP_003127481.2| PREDICTED: cdc42 effector protein 5-like [Su... 62 5e-10
Alignment gi|XP_003125272.1| PREDICTED: cdc42 effector protein 3-like iso... 49 5e-06
>ref|XP_003358042.1| PREDICTED: cdc42 effector protein 4-like isoform 2 [Sus scrofa].
Length = 357
Score = 353 bits (905), Expect = 1e-97
Identities = 187/249 (75%), Positives = 187/249 (75%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 386 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 565
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DSESMDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 566 QLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 745
QLNEKEAAE EGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE
Sbjct: 121 QLNEKEAAEKGSSKLPKSLSSSPVKKASGEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 180
Query: 746 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG 925
QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG
Sbjct: 181 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG 240
Query: 926 DDDPAGSPS 952
DDDPAGSPS
Sbjct: 241 DDDPAGSPS 249
>ref|XP_003131291.1| PREDICTED: cdc42 effector protein 4-like isoform 1 [Sus scrofa].
Length = 357
Score = 353 bits (905), Expect = 1e-97
Identities = 187/249 (75%), Positives = 187/249 (75%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 386 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 565
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DSESMDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 566 QLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 745
QLNEKEAAE EGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE
Sbjct: 121 QLNEKEAAEKGSSKLPKSLSSSPVKKASGEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 180
Query: 746 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG 925
QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG
Sbjct: 181 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG 240
Query: 926 DDDPAGSPS 952
DDDPAGSPS
Sbjct: 241 DDDPAGSPS 249
>ref|XP_003358041.1| PREDICTED: cdc42 effector protein 4-like isoform 2 [Sus scrofa].
Length = 357
Score = 353 bits (905), Expect = 1e-97
Identities = 187/249 (75%), Positives = 187/249 (75%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 386 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 565
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DSESMDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 566 QLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 745
QLNEKEAAE EGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE
Sbjct: 121 QLNEKEAAEKGSSKLPKSLSSSPVKKASGEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 180
Query: 746 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG 925
QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG
Sbjct: 181 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG 240
Query: 926 DDDPAGSPS 952
DDDPAGSPS
Sbjct: 241 DDDPAGSPS 249
>ref|XP_003131290.1| PREDICTED: cdc42 effector protein 4-like isoform 1 [Sus scrofa].
Length = 357
Score = 353 bits (905), Expect = 1e-97
Identities = 187/249 (75%), Positives = 187/249 (75%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL
Sbjct: 1 MPILKQLVSSSVHSKRRSRVDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 60
Query: 386 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 565
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DSESMDEQASSSSSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 120
Query: 566 QLNEKEAAEXXXXXXXXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 745
QLNEKEAAE EGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE
Sbjct: 121 QLNEKEAAEKGSSKLPKSLSSSPVKKASGEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDE 180
Query: 746 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG 925
QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG
Sbjct: 181 QAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYHG 240
Query: 926 DDDPAGSPS 952
DDDPAGSPS
Sbjct: 241 DDDPAGSPS 249
>ref|XP_003122586.1| PREDICTED: cdc42 effector protein 2-like [Sus scrofa].
Length = 214
Score = 71.6 bits (174), Expect = 6e-13
Identities = 63/212 (29%), Positives = 88/212 (41%), Gaps = 6/212 (2%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXX 442
L+++MIS PLGDFRHT+H+G G D FGD SFL K L
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLL--------PGTAIEEGEED 76
Query: 443 XXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEA--AEXXXXXXXX 616
++ T RE D L +KNA+SLP + +A
Sbjct: 77 GSFELPFQFTRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTLPTAQAPPKP 130
Query: 617 XXXXXXXXXXXXEGSPEEAGVEE--AVPRRNGAAAPHSPDPLLDEQAFGDLTDLPIVPKA 790
+ SP+EAG + +P A + +P+ +E
Sbjct: 131 PRLHLETPQPSPQPSPQEAGCVDIWRIPEAGSAHSGLTPESGAEEPF------------- 177
Query: 791 SFGLKHAESIMSFHIDLGPSMLGDVLSIMDKE 886
L HA S++S H+DLGPS+L DVL IMD++
Sbjct: 178 ---LSHASSLLSLHVDLGPSILDDVLQIMDQD 206
>ref|XP_003127481.2| PREDICTED: cdc42 effector protein 5-like [Sus scrofa].
Length = 153
Score = 62.0 bits (149), Expect = 5e-10
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 379
MP+LKQL + A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----ERGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|XP_003125272.1| PREDICTED: cdc42 effector protein 3-like isoform 1 [Sus scrofa].
Length = 254
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFL 364
L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,899,505
Number of extensions: 582628
Number of successful extensions: 2927
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2877
Number of HSP's successfully gapped: 7
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013502
(952 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156818.1| cdc42 effector protein 4 [Mus musculus]. 263 1e-70
Alignment gi|NP_064390.1| cdc42 effector protein 4 [Mus musculus]. 263 1e-70
Alignment gi|NP_081495.1| cdc42 effector protein 1 [Mus musculus]. 80 2e-15
Alignment gi|NP_081048.1| cdc42 effector protein 2 [Mus musculus]. 74 2e-13
Alignment gi|NP_067429.1| cdc42 effector protein 5 [Mus musculus]. 63 4e-10
Alignment gi|NP_080790.1| cdc42 effector protein 3 [Mus musculus]. 49 7e-06
>ref|NP_001156818.1| cdc42 effector protein 4 [Mus musculus].
Length = 349
Score = 263 bits (673), Expect = 1e-70
Identities = 150/248 (60%), Positives = 160/248 (64%), Gaps = 3/248 (1%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFL SKA E
Sbjct: 1 MPILKQLVSSSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLTSKAREA 60
Query: 386 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 565
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DDESLDEQASASKLSLLSRKFRGSKRS--QSVTRGDREQRDMLGSLRDSALFVKNAMSLP 118
Query: 566 QLNEKEAAEXXXXXXXXXXXXXXXXXXXX-EGSPEEAGVEEAVPRRNGAAAPHSPDPLLD 742
QLNEKEAAE +G P+ P RNGA PHSPDPLLD
Sbjct: 119 QLNEKEAAEKDSSKLPKSLSSSPVKKADARDGGPKS-------PHRNGATGPHSPDPLLD 171
Query: 743 EQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEW--EAQEEDGG 916
EQAFGDL DLPI+PK S+GLKHAESI+SFHIDLGPSMLGDVLSIMDK++W E +EE GG
Sbjct: 172 EQAFGDLMDLPIMPKVSYGLKHAESILSFHIDLGPSMLGDVLSIMDKDQWGSEEEEEAGG 231
Query: 917 YHGDDDPA 940
Y + P+
Sbjct: 232 YRDKEGPS 239
>ref|NP_064390.1| cdc42 effector protein 4 [Mus musculus].
Length = 349
Score = 263 bits (673), Expect = 1e-70
Identities = 150/248 (60%), Positives = 160/248 (64%), Gaps = 3/248 (1%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFL SKA E
Sbjct: 1 MPILKQLVSSSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLTSKAREA 60
Query: 386 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 565
QSVTRGDREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DDESLDEQASASKLSLLSRKFRGSKRS--QSVTRGDREQRDMLGSLRDSALFVKNAMSLP 118
Query: 566 QLNEKEAAEXXXXXXXXXXXXXXXXXXXX-EGSPEEAGVEEAVPRRNGAAAPHSPDPLLD 742
QLNEKEAAE +G P+ P RNGA PHSPDPLLD
Sbjct: 119 QLNEKEAAEKDSSKLPKSLSSSPVKKADARDGGPKS-------PHRNGATGPHSPDPLLD 171
Query: 743 EQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEW--EAQEEDGG 916
EQAFGDL DLPI+PK S+GLKHAESI+SFHIDLGPSMLGDVLSIMDK++W E +EE GG
Sbjct: 172 EQAFGDLMDLPIMPKVSYGLKHAESILSFHIDLGPSMLGDVLSIMDKDQWGSEEEEEAGG 231
Query: 917 YHGDDDPA 940
Y + P+
Sbjct: 232 YRDKEGPS 239
>ref|NP_081495.1| cdc42 effector protein 1 [Mus musculus].
Length = 409
Score = 80.1 bits (196), Expect = 2e-15
Identities = 71/241 (29%), Positives = 97/241 (40%), Gaps = 13/241 (5%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXXXX 448
LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 33 LTADMISPPLGDFRHTMHVGRGGDVFGDTSFLSNHGGR--------------SGNTHRSP 78
Query: 449 XXXXXXXXQSVTRGDREQRDMLGSLRDS------ALFVKNAMSLPQLNEKEAAEXXXXXX 610
Q V R R M S + +KNA+SLPQLN+ +
Sbjct: 79 RSFLARKLQQVRRVGVPPRRMASPAAPSPAPPPISPIIKNAISLPQLNQ-ATYDSLVMGK 137
Query: 611 XXXXXXXXXXXXXXEGSPEEAGV-----EEAVPRRNGAAAPHSPDPLLDEQAFGDLTDLP 775
G E+G V + + PD D + + P
Sbjct: 138 LSFDSTPASSTDGHSGYGLESGFCTISRLPRVEKHSNRDRDRDPDHSQDREQ----SSFP 193
Query: 776 IVPKASFGLKHAESIMSFH--IDLGPSMLGDVLSIMDKEEWEAQEEDGGYHGDDDPAGSP 949
P + L+ ++S++SF +DLGPS+L ++L +M E A E PA +P
Sbjct: 194 SEPTPNPELRRSDSLLSFRFDLDLGPSLLSELLGVMSLSEAPAAETPVPTANPPAPAANP 253
Query: 950 S 952
+
Sbjct: 254 A 254
>ref|NP_081048.1| cdc42 effector protein 2 [Mus musculus].
Length = 214
Score = 73.6 bits (179), Expect = 2e-13
Identities = 66/212 (31%), Positives = 85/212 (40%), Gaps = 6/212 (2%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXX 442
L+++MIS PLGDFRHT+H+G G D FGD SFL K L
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGDDMFGDISFLQGKFHLL--------PGTAVEEAEED 76
Query: 443 XXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEXXXXXXXXXX 622
++ T RE D L L +KNA+SLP + +A
Sbjct: 77 GSFDLPFQFTRTTTVCGRELPDGLSPL------LKNAISLPVIGGPQALTLPTAQAPPKP 130
Query: 623 XXXXXXXXXXEGSPEEAGVEEA-VPRRNGAAAPH---SPDPLLDEQAFGDLTDLPIVPKA 790
P G V R A +PH SP+P +E
Sbjct: 131 PRLHLESPQPSPQPSPQGAGNVDVWRIPEAGSPHNGMSPEPEAEEPF------------- 177
Query: 791 SFGLKHAESIMSFHIDLGPSMLGDVLSIMDKE 886
L HA S++S H+DLGPS+L DVL IMD +
Sbjct: 178 ---LSHASSLLSLHVDLGPSILDDVLQIMDHD 206
>ref|NP_067429.1| cdc42 effector protein 5 [Mus musculus].
Length = 150
Score = 62.8 bits (151), Expect = 4e-10
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 379
MP++KQL D A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVMKQLGPAQPKKRL----DRGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|NP_080790.1| cdc42 effector protein 3 [Mus musculus].
Length = 254
Score = 48.5 bits (114), Expect = 7e-06
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFL 364
L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,066,146
Number of extensions: 720972
Number of successful extensions: 3203
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3181
Number of HSP's successfully gapped: 8
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013502
(952 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036253.2| cdc42 effector protein 4 [Homo sapiens]. 312 3e-85
Alignment gi|NP_689449.1| cdc42 effector protein 1 [Homo sapiens]. 76 5e-14
Alignment gi|NP_006770.1| cdc42 effector protein 2 [Homo sapiens]. 64 2e-10
Alignment gi|NP_659494.2| cdc42 effector protein 5 [Homo sapiens]. 64 3e-10
Alignment gi|NP_006440.2| cdc42 effector protein 3 [Homo sapiens]. 49 9e-06
>ref|NP_036253.2| cdc42 effector protein 4 [Homo sapiens].
Length = 356
Score = 312 bits (800), Expect = 3e-85
Identities = 167/248 (67%), Positives = 176/248 (70%), Gaps = 1/248 (0%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEL 385
MPILKQL DLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGE
Sbjct: 1 MPILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEP 60
Query: 386 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLP 565
QSVTRG+REQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLP 120
Query: 566 QLNEKEAAEXXXXXXXXXXXXXXXXXXXX-EGSPEEAGVEEAVPRRNGAAAPHSPDPLLD 742
QLNEKEAAE EG EEAG EEAVPRRNGAA PHSPDPLLD
Sbjct: 121 QLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLD 180
Query: 743 EQAFGDLTDLPIVPKASFGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWEAQEEDGGYH 922
EQAFGDLTDLP+VPKA++GLKHAESIMSFHIDLGPSMLGDVLSIMDKEEW+ +E +GGYH
Sbjct: 181 EQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYH 240
Query: 923 GDDDPAGS 946
GD+ AG+
Sbjct: 241 GDEGAAGT 248
>ref|NP_689449.1| cdc42 effector protein 1 [Homo sapiens].
Length = 391
Score = 75.9 bits (185), Expect = 5e-14
Identities = 71/236 (30%), Positives = 92/236 (38%), Gaps = 8/236 (3%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXXXX 448
LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 33 LTADMISHPLGDFRHTMHVGRGGDVFGDTSFLSNHGGS--------------SGSTHRSP 78
Query: 449 XXXXXXXXQSVTRGDREQRDMLGSLRDS------ALFVKNAMSLPQLNEKEAAEXXXXXX 610
Q V R R M S + +KNA+SLPQLN +AA
Sbjct: 79 RSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAISLPQLN--QAAYDSLVVG 136
Query: 611 XXXXXXXXXXXXXXEGSPEEAGVEEAVPRRNGAAAPHSPDPLLDEQAFGDLTDLPIVPKA 790
S + R + PH D G P
Sbjct: 137 KLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPH------DRDRDGSFPSEP----- 185
Query: 791 SFGLKHAESIMSFH--IDLGPSMLGDVLSIMDKEEWEAQEEDGGYHGDDDPAGSPS 952
GL+ ++S++SF +DLGPS+L ++L +M E A E P +P+
Sbjct: 186 --GLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPT 239
>ref|NP_006770.1| cdc42 effector protein 2 [Homo sapiens].
Length = 210
Score = 64.3 bits (155), Expect = 2e-10
Identities = 60/210 (28%), Positives = 86/210 (40%), Gaps = 4/210 (1%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELXXXXXXXXXXXXXXXXXXX 442
L+++MIS PLGDFRHT+H+G G D FGD SFL K L
Sbjct: 25 LSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLL--------PGTMVEGPEED 76
Query: 443 XXXXXXXXXXQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEXXXXXXXXXX 622
++ T RE D L +KNA+SLP + +A
Sbjct: 77 GTFDLPFQFTRTATVCGRELPDGPSPL------LKNAISLPVIGGPQA--LTLPTAQAPP 128
Query: 623 XXXXXXXXXXEGSPEEAGVEE--AVPRRNGAAAPHSPDPLLDEQAFGDLTDLPIVPKASF 796
+ SP+E G + +P + +P+ +E
Sbjct: 129 KPPRLHLETPQPSPQEGGSVDIWRIPETGSPNSGLTPESGAEEPF--------------- 173
Query: 797 GLKHAESIMSFHIDLGPSMLGDVLSIMDKE 886
L +A S++S H+DLGPS+L DVL IMD++
Sbjct: 174 -LSNASSLLSLHVDLGPSILDDVLQIMDQD 202
>ref|NP_659494.2| cdc42 effector protein 5 [Homo sapiens].
Length = 148
Score = 63.5 bits (153), Expect = 3e-10
Identities = 34/58 (58%), Positives = 37/58 (63%)
Frame = +2
Query: 206 MPILKQLXXXXXXXXXXXXXDLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAG 379
MP+LKQL D A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G
Sbjct: 1 MPVLKQLGPAQPKKRP----DRGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGG 54
>ref|NP_006440.2| cdc42 effector protein 3 [Homo sapiens].
Length = 254
Score = 48.5 bits (114), Expect = 9e-06
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 269 LTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFL 364
L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,242,906
Number of extensions: 889459
Number of successful extensions: 4037
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4014
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013502
(952 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1556 0.0
Sscrofa_Chr05 66 4e-08
>Sscrofa_Chr12
|| Length = 63588571
Score = 1556 bits (785), Expect = 0.0
Identities = 827/848 (97%)
Strand = Plus / Plus
Query: 105 cagccttatgatcacctccttatcgccccctccacccgccggacttcagatctgacccca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937678 cagccttatgatcacctccttatcgccccctccacccgccggacttcagatctgacccca 7937737
Query: 165 gatccacctgttgcttagagggacccctcccctccggcaagatgccgatcctcaagcagc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937738 gatccacctgttgcttagagggacccctcccctccggcaagatgccgatcctcaagcagc 7937797
Query: 225 tggtgtccagctccgtacactccaagcgtcgctcccgagtggacctcacggctgagatga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937798 tggtgtccagctccgtacactccaagcgtcgctcccgagtggacctcacggctgagatga 7937857
Query: 285 tcagtgccccgctgggtgacttccgccacaccatgcacgtgggccgggcgggggacgcct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937858 tcagtgccccgctgggtgacttccgccacaccatgcacgtgggccgggcgggggacgcct 7937917
Query: 345 ttggggacacttcctttctcaacagcaaggccggggagctggacagtgagtccatggacg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937918 ttggggacacttcctttctcaacagcaaggccggggagctggacagtgagtccatggacg 7937977
Query: 405 agcaggcctcctcctcgtcctctaaacgcagcctcctctcccggaagttccggggcagca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7937978 agcaggcctcctcctcgtcctctaaacgcagcctcctctcccggaagttccggggcagca 7938037
Query: 465 agcggtcgcagtcagtgaccaggggggaccgggagcagagggacatgctgggctccctgc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938038 agcggtcgcagtcagtgaccaggggggaccgggagcagagggacatgctgggctccctgc 7938097
Query: 525 gggactcggccctcttcgtcaagaatgccatgtccctgccccagctgaacgagaaggagg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938098 gggactcggccctcttcgtcaagaatgccatgtccctgccccagctgaacgagaaggagg 7938157
Query: 585 ccgcagagaagggctccagcaagctccccaagagcctgtcgtccagccccgtgaagaagg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938158 ccgcagagaagggctccagcaagctccccaagagcctgtcgtccagccccgtgaagaagg 7938217
Query: 645 ccagcggggagggcagcccggaggaggcgggcgtggaggaggccgtgccccggcggaacg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938218 ccagcggggagggcagcccggaggaggcgggcgtggaggaggccgtgccccggcggaacg 7938277
Query: 705 gggctgccgnnnnnnnnnnnnnnnnnnnnntcctcgacgagcaggccttcggggacctga 764
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7938278 gggctgccgccccccactccccagaccccctcctcgacgagcaggccttcggggacctga 7938337
Query: 765 cggatctgcccatcgtgcccaaggccagcttcgggctgaagcacgccgagtccatcatgt 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938338 cggatctgcccatcgtgcccaaggccagcttcgggctgaagcacgccgagtccatcatgt 7938397
Query: 825 ctttccacatcgacctggggccctccatgctgggcgatgtcctcagcatcatggacaagg 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938398 ctttccacatcgacctggggccctccatgctgggcgatgtcctcagcatcatggacaagg 7938457
Query: 885 aggagtgggaagcccaggaggaggatggcggttaccatggtgacgatgacccagcaggca 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938458 aggagtgggaagcccaggaggaggatggcggttaccatggtgacgatgacccagcaggca 7938517
Query: 945 gcccctcc 952
||||||||
Sbjct: 7938518 gcccctcc 7938525
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 aacagacgccggcgcggacatgggccgccagccccgccgcctcgcggagcccaccgaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7918413 aacagacgccggcgcggacatgggccgccagccccgccgcctcgcggagcccaccgaggg 7918472
Query: 61 gacagcgcagccgcgccggctcggcgctcgcgtctctggggacccag 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7918473 gacagcgcagccgcgccggctcggcgctcgcgtctctggggacccag 7918519
>Sscrofa_Chr05
|| Length = 111506441
Score = 65.9 bits (33), Expect = 4e-08
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 281 atgatcagtgccccgctgggtgacttccgccacaccatgcacgtgggccgggcgggggac 340
|||||||| |||| || || ||||||||||||||||||||||||||||| | ||||||
Sbjct: 7805871 atgatcagcccccccctcggggacttccgccacaccatgcacgtgggccgcggcggggac 7805812
Query: 341 gcctttggggacacttcctttctca 365
| ||| || ||||| ||||| ||||
Sbjct: 7805811 gtcttcggcgacacctccttcctca 7805787
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,270,755
Number of extensions: 145
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 4
Length of query: 952
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 931
Effective length of database: 2,808,413,156
Effective search space: 2614632648236
Effective search space used: 2614632648236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)