Animal-Genome cDNA 20110601C-013506


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013506
         (1603 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_854063.1| PREDICTED: similar to T-cell death associated g...   115   1e-25

>ref|XP_854063.1| PREDICTED: similar to T-cell death associated gene [Canis
           familiaris].
          Length = 224

 Score =  115 bits (288), Expect = 1e-25
 Identities = 65/139 (46%), Positives = 84/139 (60%), Gaps = 32/139 (23%)
 Frame = +1

Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK--------------GAG-------- 321
           L+EGVLEKRS GLLQLWK+K C+LTE GL L   K              G G        
Sbjct: 10  LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQQPPPPPPPQQPGPGPAEPSQPG 69

Query: 322 ----------GRPKELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQ 471
                     G+ KEL F+ +K V+CVE  G+++YFT+V   G EIDFRCP +D GWNA+
Sbjct: 70  APAAASLEPPGKLKELHFSNMKTVDCVERKGKYMYFTVVMAEGKEIDFRCP-QDQGWNAE 128

Query: 472 ITLGLVKFKNQQAIQTVRA 528
           ITL +V++KN+QAI  V++
Sbjct: 129 ITLQMVQYKNRQAILAVKS 147


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,289,100
Number of extensions: 2161161
Number of successful extensions: 13092
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12926
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 426
Effective length of database: 15,274,216
Effective search space: 6506816016
Effective search space used: 6506816016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013506

Animal-Genome cDNA 20110601C-013506


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013506
         (1603 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069989.1| pleckstrin homology-like domain family A mem...   119   8e-27
Alignment   gi|NP_001099101.1| pleckstrin homology-like domain family A mem...   112   9e-25

>ref|NP_001069989.1| pleckstrin homology-like domain family A member 2 [Bos taurus].
          Length = 142

 Score =  119 bits (298), Expect = 8e-27
 Identities = 66/122 (54%), Positives = 82/122 (67%)
 Frame = +1

Query: 205 VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVESTG 384
           VLREG LEKRS  LLQ+WK+KR VLT   L+LF   G G RPKEL F  I  V+CVE TG
Sbjct: 7   VLREGELEKRSDSLLQVWKKKRGVLTTDRLRLFPT-GPGARPKELRFHSILKVDCVERTG 65

Query: 385 RHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGTLVS* 564
           +++YFT+VT    EIDFRC  E   WNA ITL L+ F+N++A+Q  R+R+   A    + 
Sbjct: 66  KYVYFTIVTTDRKEIDFRCAGES-YWNASITLALIDFQNRRAMQDFRSRRERAAAAAAAA 124

Query: 565 AA 570
           AA
Sbjct: 125 AA 126


>ref|NP_001099101.1| pleckstrin homology-like domain family A member 1 [Bos taurus].
          Length = 251

 Score =  112 bits (280), Expect = 9e-25
 Identities = 66/142 (46%), Positives = 84/142 (59%), Gaps = 35/142 (24%)
 Frame = +1

Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK-----------------GAG----- 321
           L+EGVLEKRS GLLQLWK+K C+LTE GL L   K                 G G     
Sbjct: 10  LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQHHHQQQQQQQQQQPGQGSVEPS 69

Query: 322 --GRP-----------KELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGW 462
             G P           KEL F+ +K V+CVE  G+++YFT+V   G EIDFRCP +D GW
Sbjct: 70  QPGGPAVASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMAEGKEIDFRCP-QDQGW 128

Query: 463 NAQITLGLVKFKNQQAIQTVRA 528
           NA+ITL +V++KN+QAI  V++
Sbjct: 129 NAEITLQMVQYKNRQAILAVKS 150


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,090,764
Number of extensions: 2196639
Number of successful extensions: 12811
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12683
Number of HSP's successfully gapped: 3
Length of query: 534
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,140,958
Effective search space: 6038189066
Effective search space used: 6038189066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013506
         (1603 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003357723.1| PREDICTED: pleckstrin homology-like domain f...   247   2e-65
Alignment   gi|XP_003357730.1| PREDICTED: pleckstrin homology-like domain f...   182   4e-46
Alignment   gi|NP_001167528.1| pleckstrin homology-like domain family A mem...   121   1e-27
Alignment   gi|XP_003126437.1| PREDICTED: pleckstrin homology-like domain f...   113   3e-25

>ref|XP_003357723.1| PREDICTED: pleckstrin homology-like domain family A member 3-like
           [Sus scrofa].
          Length = 123

 Score =  247 bits (630), Expect = 2e-65
 Identities = 123/123 (100%), Positives = 123/123 (100%)
 Frame = +1

Query: 193 MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV 372
           MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV
Sbjct: 1   MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV 60

Query: 373 ESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGT 552
           ESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGT
Sbjct: 61  ESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGT 120

Query: 553 LVS 561
           LVS
Sbjct: 121 LVS 123


>ref|XP_003357730.1| PREDICTED: pleckstrin homology-like domain family A member 3-like
           [Sus scrofa].
          Length = 105

 Score =  182 bits (463), Expect = 4e-46
 Identities = 89/89 (100%), Positives = 89/89 (100%)
 Frame = +1

Query: 193 MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV 372
           MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV
Sbjct: 1   MTAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECV 60

Query: 373 ESTGRHIYFTLVTEGGGEIDFRCPLEDPG 459
           ESTGRHIYFTLVTEGGGEIDFRCPLEDPG
Sbjct: 61  ESTGRHIYFTLVTEGGGEIDFRCPLEDPG 89


>ref|NP_001167528.1| pleckstrin homology-like domain family A member 2 [Sus scrofa].
          Length = 131

 Score =  121 bits (303), Expect = 1e-27
 Identities = 69/125 (55%), Positives = 81/125 (64%)
 Frame = +1

Query: 205 VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVESTG 384
           VLREG LEKRS  L QLWK+KR VLT   L LF   GAG RPKEL F  I  V+CVE TG
Sbjct: 7   VLREGELEKRSDSLFQLWKKKRGVLTPDRLSLFPT-GAGARPKELRFHSILKVDCVERTG 65

Query: 385 RHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGTLVS* 564
           +++YFT+VT    EIDFRC  E   WNA ITL L+ F+N++A+Q  R+RQ   A      
Sbjct: 66  KYVYFTIVTTDRKEIDFRCAGES-CWNAAITLALIDFQNRRALQDFRSRQERAAPAAQPE 124

Query: 565 AADGR 579
           AA  R
Sbjct: 125 AATAR 129


>ref|XP_003126437.1| PREDICTED: pleckstrin homology-like domain family A member 1-like
           [Sus scrofa].
          Length = 388

 Score =  113 bits (283), Expect = 3e-25
 Identities = 66/139 (47%), Positives = 84/139 (60%), Gaps = 32/139 (23%)
 Frame = +1

Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK--------------GAG-------G 324
           L+EGVLEKRS GLLQLWK+K C+LTE GL L   K              G G       G
Sbjct: 153 LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQHQQQQQQQQQPGQGSVEPSQSG 212

Query: 325 RP-----------KELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQ 471
            P           KEL F+ +K V+CVE  G+++YFT+V   G EIDFRCP +D GWNA+
Sbjct: 213 GPAVASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMAEGKEIDFRCP-QDQGWNAE 271

Query: 472 ITLGLVKFKNQQAIQTVRA 528
           ITL +V++KN+QAI  V++
Sbjct: 272 ITLQMVQYKNRQAILAVKS 290


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,739,493
Number of extensions: 1603995
Number of successful extensions: 8512
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8384
Number of HSP's successfully gapped: 5
Length of query: 534
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 430
Effective length of database: 8,754,644
Effective search space: 3764496920
Effective search space used: 3764496920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013506
         (1603 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_038778.1| pleckstrin homology-like domain family A member...   238   1e-62
Alignment   gi|NP_033370.2| pleckstrin homology-like domain family A member...   113   4e-25
Alignment   gi|NP_033460.1| pleckstrin homology-like domain family A member...   102   9e-22

>ref|NP_038778.1| pleckstrin homology-like domain family A member 3 [Mus musculus].
          Length = 125

 Score =  238 bits (606), Expect = 1e-62
 Identities = 120/125 (96%), Positives = 121/125 (96%), Gaps = 2/125 (1%)
 Frame = +1

Query: 193 MTAA--VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVE 366
           MTAA  VL+EGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKG GGRPKELSFARIKAVE
Sbjct: 1   MTAAATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKAVE 60

Query: 367 CVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGA 546
           CVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLG 
Sbjct: 61  CVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGT 120

Query: 547 GTLVS 561
           GTLVS
Sbjct: 121 GTLVS 125


>ref|NP_033370.2| pleckstrin homology-like domain family A member 1 [Mus musculus].
          Length = 405

 Score =  113 bits (283), Expect = 4e-25
 Identities = 64/136 (47%), Positives = 83/136 (61%), Gaps = 29/136 (21%)
 Frame = +1

Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK-----------GAGG---------- 324
           L+EGVLEKRS GLLQLWK+K C+LTE GL L   K           G G           
Sbjct: 154 LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQQQQQQQQPGQGTAEPSQPSGPT 213

Query: 325 --------RPKELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITL 480
                   + KEL F+ +K V+CVE  G+++YFT+V   G EIDFRCP +D GWNA+ITL
Sbjct: 214 VASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMTEGKEIDFRCP-QDQGWNAEITL 272

Query: 481 GLVKFKNQQAIQTVRA 528
            +V++KN+QAI  V++
Sbjct: 273 QMVQYKNRQAILAVKS 288


>ref|NP_033460.1| pleckstrin homology-like domain family A member 2 [Mus musculus].
          Length = 144

 Score =  102 bits (254), Expect = 9e-22
 Identities = 54/104 (51%), Positives = 71/104 (68%)
 Frame = +1

Query: 205 VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVESTG 384
           +L EG LEKRS  L Q+WK+KRCVLT   L+LF  K +    KEL F  I  V+CVE T 
Sbjct: 18  ILCEGELEKRSDSLFQVWKKKRCVLTADRLRLFSGKTSPA--KELFFHSILKVDCVEHTS 75

Query: 385 RHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQ 516
           +++YFT+VT    EIDFRC +E   WNA IT+ L+ F+N++A+Q
Sbjct: 76  KYVYFTIVTNYYKEIDFRCTVES-CWNAAITMALIDFQNRRALQ 118


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,214,785
Number of extensions: 1671425
Number of successful extensions: 9364
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9250
Number of HSP's successfully gapped: 3
Length of query: 534
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 428
Effective length of database: 12,433,743
Effective search space: 5321642004
Effective search space used: 5321642004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013506
         (1603 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_036528.1| pleckstrin homology-like domain family A member...   239   5e-63
Alignment   gi|NP_003302.1| pleckstrin homology-like domain family A member...   112   1e-24
Alignment   gi|NP_031376.3| pleckstrin homology-like domain family A member...   110   5e-24

>ref|NP_036528.1| pleckstrin homology-like domain family A member 3 [Homo sapiens].
          Length = 127

 Score =  239 bits (610), Expect = 5e-63
 Identities = 118/122 (96%), Positives = 119/122 (97%)
 Frame = +1

Query: 196 TAAVLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVE 375
           TA VL+EGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKG GGRPKELSFARIKAVECVE
Sbjct: 6   TATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKAVECVE 65

Query: 376 STGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGAGTL 555
           STGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLG GTL
Sbjct: 66  STGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGTGTL 125

Query: 556 VS 561
           VS
Sbjct: 126 VS 127


>ref|NP_003302.1| pleckstrin homology-like domain family A member 2 [Homo sapiens].
          Length = 152

 Score =  112 bits (280), Expect = 1e-24
 Identities = 62/110 (56%), Positives = 74/110 (67%)
 Frame = +1

Query: 205 VLREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGAGGRPKELSFARIKAVECVESTG 384
           VLREG LEKRS  L QLWK+KR VLT   L LF A     RPKEL F  I  V+CVE TG
Sbjct: 7   VLREGELEKRSDSLFQLWKKKRGVLTSDRLSLFPASPRA-RPKELRFHSILKVDCVERTG 65

Query: 385 RHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQ 534
           +++YFT+VT    EIDFRC  E   WNA I L L+ F+N++A+Q  R+RQ
Sbjct: 66  KYVYFTIVTTDHKEIDFRCAGES-CWNAAIALALIDFQNRRALQDFRSRQ 114


>ref|NP_031376.3| pleckstrin homology-like domain family A member 1 [Homo sapiens].
          Length = 401

 Score =  110 bits (274), Expect = 5e-24
 Identities = 64/145 (44%), Positives = 83/145 (57%), Gaps = 38/145 (26%)
 Frame = +1

Query: 208 LREGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAK--------------------GAGG- 324
           L+EGVLEKRS GLLQLWK+K C+LTE GL L   K                    G G  
Sbjct: 151 LKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQHQQQQQQQQQQQQQQQPGQGPA 210

Query: 325 -----------------RPKELSFARIKAVECVESTGRHIYFTLVTEGGGEIDFRCPLED 453
                            + KEL F+ +K V+CVE  G+++YFT+V   G EIDFRCP +D
Sbjct: 211 EPSQPSGPAVASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMAEGKEIDFRCP-QD 269

Query: 454 PGWNAQITLGLVKFKNQQAIQTVRA 528
            GWNA+ITL +V++KN+QAI  V++
Sbjct: 270 QGWNAEITLQMVQYKNRQAILAVKS 294


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,477,546
Number of extensions: 2058112
Number of successful extensions: 12200
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12017
Number of HSP's successfully gapped: 4
Length of query: 534
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,770,016
Effective search space: 6306796832
Effective search space used: 6306796832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013506
         (1603 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                        1746   0.0  

>Sscrofa_Chr10 
||          Length = 79102373

 Score = 1746 bits (881), Expect = 0.0
 Identities = 887/889 (99%)
 Strand = Plus / Minus

                                                                            
Query: 622      cagccccctgcctctccagcttttgcgggccgactgccccatcgggcagggtggaagcca 681
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28234087 cagccccctgcctctccagcttttgcgggccgactgccccatcgggcagggtggaagcca 28234028

                                                                            
Query: 682      tggacgcgtggaagaggcgtgggaacctaagccttgccgggcctgggaggagggcagatg 741
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28234027 tggacgcgtggaagaggcgtgggaacctaagccttgccgggcctgggaggagggcagatg 28233968

                                                                            
Query: 742      gccacgtggggctgaggatgaagattcagcccttgtagatgcagactctcgggatggacc 801
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233967 gccacgtggggctgaggatgaagattcagcccttgtagatgcagactctcgggatggacc 28233908

                                                                            
Query: 802      agctcagaccttgcagccacctgcctggcctccgagatggtgacgggagctggcatcaca 861
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233907 agctcagaccttgcagccacctgcctggcctccgagatggtgacgggagctggcatcaca 28233848

                                                                            
Query: 862      gacccctcccgccatgccctgccatctgtcctgcagactactcttggtccccgggcttgg 921
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233847 gacccctcccgccatgccctgccatctgtcctgcagactactcttggtccccgggcttgg 28233788

                                                                            
Query: 922      gccatgcctggaggaaggcagacccccgggggcgctcagccagcgcctcaggactcagga 981
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233787 gccatgcctggaggaaggcagacccccgggggcgctcagccagcgcctcaggactcagga 28233728

                                                                            
Query: 982      ggccagcctgacgctcagaagaggaaactccccaccccaactcccctctggattcacttt 1041
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233727 ggccagcctgacgctcagaagaggaaactccccaccccaactcccctctggattcacttt 28233668

                                                                            
Query: 1042     ggcgggggtcactgatgggcctgcggcccacgctttggggtcgtctgctgcttgggtcct 1101
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233667 ggcgggggtcactgatgggcctgcggcccacgctttggggtcgtctgctgcttgggtcct 28233608

                                                                            
Query: 1102     tctgggacccccacccattcaggcctctctttgcacagttcttccccctcctgcccatct 1161
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233607 tctgggacccccacccattcaggcctctctttgcacagttcttccccctcctgcccatct 28233548

                                                                            
Query: 1162     tctccccactgcagtgctaggcctggaggtggtgggggtggtcgggggttcagccattac 1221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233547 tctccccactgcagtgctaggcctggaggtggtgggggtggtcgggggttcagccattac 28233488

                                                                            
Query: 1222     catttcattaccatttcatgcctatcccaacccgcagccgctctgcctgcaaaggcagcg 1281
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233487 catttcattaccatttcatgcctatcccaacccgcagccgctctgcctgcaaaggcagcg 28233428

                                                                            
Query: 1282     ctcacactgttcactgaatgaaattctttgcccacaaagacctggtgtttggaacatctg 1341
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233427 ctcacactgttcactgaatgaaattctttgcccacaaagacctggtgtttggaacatctg 28233368

                                                                            
Query: 1342     tttcctcacccccactttcccagtctgcatcccacccctaaacttccaggctggggaggg 1401
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28233367 tttcctcacccccactttcccagtctgcatcccacccctaaacttccaggctggggaggg 28233308

                                                                            
Query: 1402     agagaccctggagcccaggggacaggaccccagaggtcctaggagggagagactatgaga 1461
                ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 28233307 agagaccctggagcccaggggacaggacctcagaggtcctaggagggagagactatgaga 28233248

                                                                 
Query: 1462     ccgggacgggaggtgttgctctggccagctcagtctccagagatgcccc 1510
                ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 28233247 ccgggacgggaggtgttgccctggccagctcagtctccagagatgcccc 28233199



 Score =  856 bits (432), Expect = 0.0
 Identities = 432/432 (100%)
 Strand = Plus / Minus

                                                                            
Query: 193      atgacggcggccgtgctccgggagggcgtgctggagaagcgcagtggcgggctgctgcag 252
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235786 atgacggcggccgtgctccgggagggcgtgctggagaagcgcagtggcgggctgctgcag 28235727

                                                                            
Query: 253      ttgtggaagcgcaagcgttgcgtgctcaccgagcgcgggctgcagctcttcgaggccaag 312
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235726 ttgtggaagcgcaagcgttgcgtgctcaccgagcgcgggctgcagctcttcgaggccaag 28235667

                                                                            
Query: 313      ggcgcgggcggccgtcccaaggagctgagtttcgcccgcatcaaggcggtggagtgcgtg 372
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235666 ggcgcgggcggccgtcccaaggagctgagtttcgcccgcatcaaggcggtggagtgcgtg 28235607

                                                                            
Query: 373      gagagcacggggcgccacatctacttcacgctggtgaccgagggcggcggcgagatcgac 432
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235606 gagagcacggggcgccacatctacttcacgctggtgaccgagggcggcggcgagatcgac 28235547

                                                                            
Query: 433      ttccgctgcccgctcgaggaccccggctggaacgcgcagatcaccctgggcctggtcaag 492
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235546 ttccgctgcccgctcgaggaccccggctggaacgcgcagatcaccctgggcctggtcaag 28235487

                                                                            
Query: 493      ttcaagaaccagcaggctatccagacggtgcgcgcgcggcagagcctgggggccgggacc 552
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235486 ttcaagaaccagcaggctatccagacggtgcgcgcgcggcagagcctgggggccgggacc 28235427

                                                                            
Query: 553      ctggtgtcttaagccgcggacggacgtctccgctccacgcggcccattgacgcagcgcgg 612
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235426 ctggtgtcttaagccgcggacggacgtctccgctccacgcggcccattgacgcagcgcgg 28235367

                            
Query: 613      aggtggtgtcag 624
                ||||||||||||
Sbjct: 28235366 aggtggtgtcag 28235355



 Score =  143 bits (72), Expect = 3e-31
 Identities = 72/72 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        gacatgtgagggcacatccccggagcggccgcccagcgcgcagacggccggcggagcgag 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28235980 gacatgtgagggcacatccccggagcggccgcccagcgcgcagacggccggcggagcgag 28235921

                            
Query: 61       cgggccagcgat 72
                ||||||||||||
Sbjct: 28235920 cgggccagcgat 28235909


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,372,132
Number of extensions: 338
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 3
Length of query: 1603
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1581
Effective length of database: 2,808,408,574
Effective search space: 4440093955494
Effective search space used: 4440093955494
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)