Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013511
(1556 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849792.1| PREDICTED: similar to protein phosphatase 1, re... 155 8e-38
Alignment gi|XP_859795.1| PREDICTED: similar to protein phosphatase 1, re... 142 1e-33
>ref|XP_849792.1| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor)
subunit 11 isoform 1 isoform 1 [Canis familiaris].
Length = 126
Score = 155 bits (393), Expect = 8e-38
Identities = 75/102 (73%), Positives = 76/102 (74%)
Frame = +1
Query: 208 MAEAGAGLSXXXXXXXXXXXXXPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 387
MAEAGAGLS PENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC
Sbjct: 1 MAEAGAGLSETVTETTVTVTTEPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 60
Query: 388 CCIYEKPRAFGXXXXXXXXXXXXGCGHTHCVRGHRKGRRRAT 513
CCIYEKPRAFG GCGHTHCVRGHRKG+RR T
Sbjct: 61 CCIYEKPRAFGESSTESDEEEEEGCGHTHCVRGHRKGQRRTT 102
>ref|XP_859795.1| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor)
subunit 11 isoform 1 isoform 2 [Canis familiaris].
Length = 109
Score = 142 bits (357), Expect = 1e-33
Identities = 65/79 (82%), Positives = 66/79 (83%)
Frame = +1
Query: 277 ENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKCCCIYEKPRAFGXXXXXXXXXXXX 456
ENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKCCCIYEKPRAFG
Sbjct: 7 ENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKCCCIYEKPRAFGESSTESDEEEEE 66
Query: 457 GCGHTHCVRGHRKGRRRAT 513
GCGHTHCVRGHRKG+RR T
Sbjct: 67 GCGHTHCVRGHRKGQRRTT 85
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,166,724
Number of extensions: 1594609
Number of successful extensions: 4663
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4658
Number of HSP's successfully gapped: 2
Length of query: 518
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 411
Effective length of database: 15,307,552
Effective search space: 6291403872
Effective search space used: 6291403872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013511
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013511
(1556 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093765.1| protein phosphatase 1, regulatory (inhibitor... 157 3e-38
Alignment gi|XP_001790527.1| PREDICTED: protein phosphatase 1, regulatory... 157 3e-38
>ref|NP_001093765.1| protein phosphatase 1, regulatory (inhibitor) subunit 11 [Bos
taurus].
Length = 126
Score = 157 bits (396), Expect = 3e-38
Identities = 76/102 (74%), Positives = 76/102 (74%)
Frame = +1
Query: 208 MAEAGAGLSXXXXXXXXXXXXXPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 387
MAEAGAGLS PENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC
Sbjct: 1 MAEAGAGLSETVTETTVTVTTEPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 60
Query: 388 CCIYEKPRAFGXXXXXXXXXXXXGCGHTHCVRGHRKGRRRAT 513
CCIYEKPRAFG GCGHTHCVRGHRKGRR AT
Sbjct: 61 CCIYEKPRAFGESSTESDDEEEEGCGHTHCVRGHRKGRRHAT 102
>ref|XP_001790527.1| PREDICTED: protein phosphatase 1, regulatory (inhibitor) subunit 11
[Bos taurus].
Length = 126
Score = 157 bits (396), Expect = 3e-38
Identities = 76/102 (74%), Positives = 76/102 (74%)
Frame = +1
Query: 208 MAEAGAGLSXXXXXXXXXXXXXPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 387
MAEAGAGLS PENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC
Sbjct: 1 MAEAGAGLSETVTETTVTVTTEPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 60
Query: 388 CCIYEKPRAFGXXXXXXXXXXXXGCGHTHCVRGHRKGRRRAT 513
CCIYEKPRAFG GCGHTHCVRGHRKGRR AT
Sbjct: 61 CCIYEKPRAFGESSTESDDEEEEGCGHTHCVRGHRKGRRHAT 102
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,732,534
Number of extensions: 1551970
Number of successful extensions: 4523
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4515
Number of HSP's successfully gapped: 2
Length of query: 518
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 411
Effective length of database: 14,140,958
Effective search space: 5811933738
Effective search space used: 5811933738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013511
(1556 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929404.1| PREDICTED: protein phosphatase 1 regulatory ... 159 5e-39
Alignment gi|NP_001116638.1| protein phosphatase 1 regulatory subunit 11 ... 159 5e-39
>ref|XP_001929404.1| PREDICTED: protein phosphatase 1 regulatory subunit 11-like [Sus
scrofa].
Length = 126
Score = 159 bits (401), Expect = 5e-39
Identities = 77/102 (75%), Positives = 77/102 (75%)
Frame = +1
Query: 208 MAEAGAGLSXXXXXXXXXXXXXPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 387
MAEAGAGLS PENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC
Sbjct: 1 MAEAGAGLSETVTETTVTVTTEPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 60
Query: 388 CCIYEKPRAFGXXXXXXXXXXXXGCGHTHCVRGHRKGRRRAT 513
CCIYEKPRAFG GCGHTHCVRGHRKGRRRAT
Sbjct: 61 CCIYEKPRAFGESSTESDEEEEEGCGHTHCVRGHRKGRRRAT 102
>ref|NP_001116638.1| protein phosphatase 1 regulatory subunit 11 [Sus scrofa].
Length = 126
Score = 159 bits (401), Expect = 5e-39
Identities = 77/102 (75%), Positives = 77/102 (75%)
Frame = +1
Query: 208 MAEAGAGLSXXXXXXXXXXXXXPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 387
MAEAGAGLS PENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC
Sbjct: 1 MAEAGAGLSETVTETTVTVTTEPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 60
Query: 388 CCIYEKPRAFGXXXXXXXXXXXXGCGHTHCVRGHRKGRRRAT 513
CCIYEKPRAFG GCGHTHCVRGHRKGRRRAT
Sbjct: 61 CCIYEKPRAFGESSTESDEEEEEGCGHTHCVRGHRKGRRRAT 102
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,635,501
Number of extensions: 1002891
Number of successful extensions: 3116
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3110
Number of HSP's successfully gapped: 2
Length of query: 518
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 415
Effective length of database: 8,779,541
Effective search space: 3643509515
Effective search space used: 3643509515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013511
(1556 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083908.1| protein phosphatase 1 regulatory subunit 11 [Mu... 137 2e-32
>ref|NP_083908.1| protein phosphatase 1 regulatory subunit 11 [Mus musculus].
Length = 131
Score = 137 bits (345), Expect = 2e-32
Identities = 68/107 (63%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 208 MAEAGAGLSXXXXXXXXXXXXX-----PENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGR 372
MAE GAG+S PEN+SLT+KLRKRKPEKKVEW+SDTVDNEHMGR
Sbjct: 1 MAETGAGISETVTETTVTETTVTETTEPENQSLTMKLRKRKPEKKVEWSSDTVDNEHMGR 60
Query: 373 RSSKCCCIYEKPRAFGXXXXXXXXXXXXGCGHTHCVRGHRKGRRRAT 513
RSSKCCCIYEKPRAFG GC H HCVRGHRKGRR T
Sbjct: 61 RSSKCCCIYEKPRAFGESSTESDEDEEEGCSHKHCVRGHRKGRRPTT 107
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,017,075
Number of extensions: 1305618
Number of successful extensions: 3889
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3880
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 412
Effective length of database: 12,433,743
Effective search space: 5122702116
Effective search space used: 5122702116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013511
(1556 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068778.1| protein phosphatase 1 regulatory subunit 11 [Ho... 159 9e-39
>ref|NP_068778.1| protein phosphatase 1 regulatory subunit 11 [Homo sapiens].
Length = 126
Score = 159 bits (401), Expect = 9e-39
Identities = 77/102 (75%), Positives = 77/102 (75%)
Frame = +1
Query: 208 MAEAGAGLSXXXXXXXXXXXXXPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 387
MAEAGAGLS PENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC
Sbjct: 1 MAEAGAGLSETVTETTVTVTTEPENRSLTIKLRKRKPEKKVEWTSDTVDNEHMGRRSSKC 60
Query: 388 CCIYEKPRAFGXXXXXXXXXXXXGCGHTHCVRGHRKGRRRAT 513
CCIYEKPRAFG GCGHTHCVRGHRKGRRRAT
Sbjct: 61 CCIYEKPRAFGESSTESDEEEEEGCGHTHCVRGHRKGRRRAT 102
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,025,547
Number of extensions: 1569114
Number of successful extensions: 4431
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4425
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 411
Effective length of database: 14,770,016
Effective search space: 6070476576
Effective search space used: 6070476576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013511
(1556 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1804 0.0
Sscrofa_Chr06 220 2e-54
>Sscrofa_Chr07
|| Length = 134764511
Score = 1804 bits (910), Expect = 0.0
Identities = 962/982 (97%), Gaps = 2/982 (0%)
Strand = Plus / Minus
Query: 571 gggccaatgcagcactaaattcctctctcccccaccattcctgtgtctgtctggccctga 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992340 gggccaatgcagcactaaattcctctctcccccaccattcctgtgtctgtctggccctga 24992281
Query: 631 atgtattcatgtggctccttggggactaaacccatgtttgatcccttctccagccccttc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992280 atgtattcatgtggctccttggggactaaacccatgtttgatcccttctccagccccttc 24992221
Query: 691 ctcccctctccggatagaaggaaacaggagaggagggtggacagagatcccggaattctg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992220 ctcccctctccggatagaaggaaacaggagaggagggtggacagagatcccggaattctg 24992161
Query: 751 acttgctgctattccagagcccaggcttctgggttctctgagtcctcatttctcttccca 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992160 acttgctgctattccagagcccaggcttctgggttctctgagtcctcatttctcttccca 24992101
Query: 811 gtacccagcttcctctctccagggatccaggcatcttggtcccaatctcttccctttgtt 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992100 gtacccagcttcctctctccagggatccaggcatcttggtcccaatctcttccctttgtt 24992041
Query: 871 ctcactgccaaactgcctgtcctgggatccagttatcctggccccatgcactctccactt 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992040 ctcactgccaaactgcctgtcctgggatccagttatcctggccccatgcactctccactt 24991981
Query: 931 gagtcccaaacagttaaactgggtttccaacagccccagctttcactgccagggtcctag 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991980 gagtcccaaacagttaaactgggtttccaacagccccagctttcactgccagggtcctag 24991921
Query: 991 tcagattccaggcaacctcggcccagctacgcttgttacccctggcttagagctcttcca 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991920 tcagattccaggcaacctcggcccagctacgcttgttacccctggcttagagctcttcca 24991861
Query: 1051 ctgctgtctttacataatgctaactcttagtcctggcctgtgggattgtgaggtcttatg 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991860 ctgctgtctttacataatgctaactcttagtcctggcctgtgggattgtgaggtcttatg 24991801
Query: 1111 agagacctcagggcgctctttccttcctctcctgcccactcccctcatgcccttaagaga 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991800 agagacctcagggcgctctttccttcctctcctgcccactcccctcatgcccttaagaga 24991741
Query: 1171 agttaggagggagagaggtctttgtcatgctcacctttaatgggtaatggagnnnnnnnn 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991740 agttaggagggagagaggtctttgtcatgctcacctttaatgggtaatggagaaaaaaat 24991681
Query: 1231 nnnnnnngtcatatcctctctcctcttccttctcacatgacctagggtttctgacaaagc 1290
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991680 taaaaaagtcatatcctctctcctcttccttctcacatgacctagggtttctgacaaagc 24991621
Query: 1291 tggcttcaagatcagtcacttgcagccaactgttggcctttggtcttccaggttaggaga 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991620 tggcttcaagatcagtcacttgcagccaactgttggcctttggtcttccaggttaggaga 24991561
Query: 1351 cagatccatcanggtcccagggagaggaaagaaaagggagggagcaaagagatgggggtt 1410
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 24991560 cagatccatcagggtcccagggagaggaaggaaaagggagggagcaaagagatgggggtt 24991501
Query: 1411 tgtcccctgtgctgtactcttaccccttccttcctaagcattggtgtctctgccagccca 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991500 tgtcccctgtgctgtactcttaccccttccttcctaagcattggtgtctctgccagccca 24991441
Query: 1471 ggtgtccagctctcttggccctctgcacccctt-ccgggatctggatgtcattttcca-g 1528
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 24991440 ggtgtccagctctcttggccctctgcaccccttcccgggatctggatgtcattttccagg 24991381
Query: 1529 cctcctgccatgcacagttgca 1550
|||| |||||||||||||||||
Sbjct: 24991380 cctcttgccatgcacagttgca 24991359
Score = 1804 bits (910), Expect = 0.0
Identities = 962/982 (97%), Gaps = 2/982 (0%)
Strand = Plus / Minus
Query: 571 gggccaatgcagcactaaattcctctctcccccaccattcctgtgtctgtctggccctga 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151986 gggccaatgcagcactaaattcctctctcccccaccattcctgtgtctgtctggccctga 25151927
Query: 631 atgtattcatgtggctccttggggactaaacccatgtttgatcccttctccagccccttc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151926 atgtattcatgtggctccttggggactaaacccatgtttgatcccttctccagccccttc 25151867
Query: 691 ctcccctctccggatagaaggaaacaggagaggagggtggacagagatcccggaattctg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151866 ctcccctctccggatagaaggaaacaggagaggagggtggacagagatcccggaattctg 25151807
Query: 751 acttgctgctattccagagcccaggcttctgggttctctgagtcctcatttctcttccca 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151806 acttgctgctattccagagcccaggcttctgggttctctgagtcctcatttctcttccca 25151747
Query: 811 gtacccagcttcctctctccagggatccaggcatcttggtcccaatctcttccctttgtt 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151746 gtacccagcttcctctctccagggatccaggcatcttggtcccaatctcttccctttgtt 25151687
Query: 871 ctcactgccaaactgcctgtcctgggatccagttatcctggccccatgcactctccactt 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151686 ctcactgccaaactgcctgtcctgggatccagttatcctggccccatgcactctccactt 25151627
Query: 931 gagtcccaaacagttaaactgggtttccaacagccccagctttcactgccagggtcctag 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151626 gagtcccaaacagttaaactgggtttccaacagccccagctttcactgccagggtcctag 25151567
Query: 991 tcagattccaggcaacctcggcccagctacgcttgttacccctggcttagagctcttcca 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151566 tcagattccaggcaacctcggcccagctacgcttgttacccctggcttagagctcttcca 25151507
Query: 1051 ctgctgtctttacataatgctaactcttagtcctggcctgtgggattgtgaggtcttatg 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151506 ctgctgtctttacataatgctaactcttagtcctggcctgtgggattgtgaggtcttatg 25151447
Query: 1111 agagacctcagggcgctctttccttcctctcctgcccactcccctcatgcccttaagaga 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151446 agagacctcagggcgctctttccttcctctcctgcccactcccctcatgcccttaagaga 25151387
Query: 1171 agttaggagggagagaggtctttgtcatgctcacctttaatgggtaatggagnnnnnnnn 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151386 agttaggagggagagaggtctttgtcatgctcacctttaatgggtaatggagaaaaaaat 25151327
Query: 1231 nnnnnnngtcatatcctctctcctcttccttctcacatgacctagggtttctgacaaagc 1290
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151326 taaaaaagtcatatcctctctcctcttccttctcacatgacctagggtttctgacaaagc 25151267
Query: 1291 tggcttcaagatcagtcacttgcagccaactgttggcctttggtcttccaggttaggaga 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151266 tggcttcaagatcagtcacttgcagccaactgttggcctttggtcttccaggttaggaga 25151207
Query: 1351 cagatccatcanggtcccagggagaggaaagaaaagggagggagcaaagagatgggggtt 1410
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 25151206 cagatccatcagggtcccagggagaggaaggaaaagggagggagcaaagagatgggggtt 25151147
Query: 1411 tgtcccctgtgctgtactcttaccccttccttcctaagcattggtgtctctgccagccca 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25151146 tgtcccctgtgctgtactcttaccccttccttcctaagcattggtgtctctgccagccca 25151087
Query: 1471 ggtgtccagctctcttggccctctgcacccctt-ccgggatctggatgtcattttcca-g 1528
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 25151086 ggtgtccagctctcttggccctctgcaccccttcccgggatctggatgtcattttccagg 25151027
Query: 1529 cctcctgccatgcacagttgca 1550
|||| |||||||||||||||||
Sbjct: 25151026 cctcttgccatgcacagttgca 25151005
Score = 305 bits (154), Expect = 4e-80
Identities = 160/162 (98%)
Strand = Plus / Minus
Query: 2 ggaagcggagagcccgtagtggggttggacaggttatccccaggggtggggcagcggagg 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24994387 ggaagcggagagccggaagtggggttggacaggttatccccaggggtggggcagcggagg 24994328
Query: 62 cccaggaggagggggaaaaagaaggtggaggaacctggctactaatctgaatccgatacg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24994327 cccaggaggagggggaaaaagaaggtggaggaacctggctactaatctgaatccgatacg 24994268
Query: 122 gattctcttagacctcagagacacagaaaagagagaagggtg 163
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24994267 gattctcttagacctcagagacacagaaaagagagaagggtg 24994226
Score = 305 bits (154), Expect = 4e-80
Identities = 160/162 (98%)
Strand = Plus / Minus
Query: 2 ggaagcggagagcccgtagtggggttggacaggttatccccaggggtggggcagcggagg 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25154037 ggaagcggagagccggaagtggggttggacaggttatccccaggggtggggcagcggagg 25153978
Query: 62 cccaggaggagggggaaaaagaaggtggaggaacctggctactaatctgaatccgatacg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25153977 cccaggaggagggggaaaaagaaggtggaggaacctggctactaatctgaatccgatacg 25153918
Query: 122 gattctcttagacctcagagacacagaaaagagagaagggtg 163
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25153917 gattctcttagacctcagagacacagaaaagagagaagggtg 25153876
Score = 248 bits (125), Expect = 8e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 386 gctgctgtatttatgagaaacctcgggcttttggcgagagttccacggagagtgatgagg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25152171 gctgctgtatttatgagaaacctcgggcttttggcgagagttccacggagagtgatgagg 25152112
Query: 446 aggaagaggagggctgtggtcatacacactgtgtacggggccaccgcaaaggacggcgtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25152111 aggaagaggagggctgtggtcatacacactgtgtacggggccaccgcaaaggacggcgtc 25152052
Query: 506 gtgca 510
|||||
Sbjct: 25152051 gtgca 25152047
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Minus
Query: 386 gctgctgtatttatgagaaacctcgggcttttggcgagagttccacggagagtgatgagg 445
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24992525 gctgctgtatttatgagaaacctcgggcctttggcgagagttccacggagagtgatgagg 24992466
Query: 446 aggaagaggagggctgtggtcatacacactgtgtacggggccaccgcaaaggacggcgtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992465 aggaagaggagggctgtggtcatacacactgtgtacggggccaccgcaaaggacggcgtc 24992406
Query: 506 gtgca 510
|||||
Sbjct: 24992405 gtgca 24992401
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 277 gagaaccggagcctaaccatcaaacttcggaaacggaagccagagaaaaaggtagaatgg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24993002 gagaaccggagcctaaccatcaaacttcggaaacggaagccagagaaaaaggtagaatgg 24992943
Query: 337 acgagtgacactgtggacaacgaacacatggggcgccgctcatcaaaatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992942 acgagtgacactgtggacaacgaacacatggggcgccgctcatcaaaatg 24992893
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 277 gagaaccggagcctaaccatcaaacttcggaaacggaagccagagaaaaaggtagaatgg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25152648 gagaaccggagcctaaccatcaaacttcggaaacggaagccagagaaaaaggtagaatgg 25152589
Query: 337 acgagtgacactgtggacaacgaacacatggggcgccgctcatcaaaatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25152588 acgagtgacactgtggacaacgaacacatggggcgccgctcatcaaaatg 25152539
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 198 agccttagccatggcggaggcaggggccgggctgagtgagaccgtcactgagacaacggt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24994191 agccttagccatggcggaggcaggggccgggctgagtgagaccgtcactgagacaacggt 24994132
Query: 258 taccgtgacaaccgagcccg 277
||||||||||||||||||||
Sbjct: 24994131 taccgtgacaaccgagcccg 24994112
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 198 agccttagccatggcggaggcaggggccgggctgagtgagaccgtcactgagacaacggt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25153841 agccttagccatggcggaggcaggggccgggctgagtgagaccgtcactgagacaacggt 25153782
Query: 258 taccgtgacaaccgagcccg 277
||||||||||||||||||||
Sbjct: 25153781 taccgtgacaaccgagcccg 25153762
>Sscrofa_Chr06
|| Length = 157765593
Score = 220 bits (111), Expect = 2e-54
Identities = 168/183 (91%), Gaps = 3/183 (1%)
Strand = Plus / Plus
Query: 1371 ggagaggaaagaaaagggagggagcaaagagatgggggtttgtcccct-gtgctgtactc 1429
||||| ||| |||||| |||||||||||||||||| |||||||||||| |||||| ||||
Sbjct: 87925402 ggagaagaaggaaaagtgagggagcaaagagatggaggtttgtccccttgtgctgcactc 87925461
Query: 1430 ttaccccttccttcctaagcattggtgtctctgccagcccaggtgtccagctctcttggc 1489
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 87925462 ttaccccttccttcctaagctttggtgtctctgccagcccaggtgtccagctctctttgt 87925521
Query: 1490 cctctgcacccctt-ccgggatctggatgtcattttcca-gcctcctgccatgcacagtt 1547
|||| ||||||||| || ||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 87925522 cctccgcaccccttaccaggatctggacgtcattttccaggcctcttgccatgcacagtt 87925581
Query: 1548 gca 1550
|||
Sbjct: 87925582 gca 87925584
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,321,849
Number of extensions: 588
Number of successful extensions: 588
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 13
Length of query: 1556
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1535
Effective length of database: 2,808,413,156
Effective search space: 4310914194460
Effective search space used: 4310914194460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)