Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013524
(959 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532299.2| PREDICTED: similar to WD repeats and SOF1 domai... 554 e-158
Alignment gi|XP_533441.2| PREDICTED: similar to WD repeats and SOF1 domai... 515 e-146
Alignment gi|XP_867899.1| PREDICTED: similar to PRP19/PSO4 homolog (Nucle... 65 9e-11
Alignment gi|XP_867913.1| PREDICTED: similar to PRP19/PSO4 homolog (Nucle... 65 1e-10
Alignment gi|XP_853782.1| PREDICTED: similar to PRP19/PSO4 homolog (Nucle... 65 1e-10
Alignment gi|XP_867905.1| PREDICTED: similar to PRP19/PSO4 homolog (Nucle... 63 4e-10
Alignment gi|XP_855313.1| PREDICTED: similar to Pleiotropic regulator 1 [... 56 6e-08
Alignment gi|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 1... 56 6e-08
Alignment gi|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain pr... 56 6e-08
Alignment gi|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain pr... 56 6e-08
>ref|XP_532299.2| PREDICTED: similar to WD repeats and SOF1 domain containing [Canis
familiaris].
Length = 445
Score = 554 bits (1427), Expect = e-158
Identities = 262/271 (96%), Positives = 268/271 (98%)
Frame = +3
Query: 147 MKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKPFLA 326
MKVKMLSRNPDNYVRETKLDLQRVPRNYDP LHPFEVPREYVRALNATKLERVFAKPFLA
Sbjct: 1 MKVKMLSRNPDNYVRETKLDLQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLA 60
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC 506
SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC
Sbjct: 61 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC 120
Query: 507 GTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQVDI 686
GTSFFTVGDDKTVKQWKMDGP YGE+EEPLHTILGKTVYTGIDHHWKEA+FATCGQQVDI
Sbjct: 121 GTSFFTVGDDKTVKQWKMDGPGYGEEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDI 180
Query: 687 WDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMR 866
WDEQRT+PICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMR
Sbjct: 181 WDEQRTSPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMR 240
Query: 867 TNTIGWNPMEAFIFTASNEEYHLYTFDMRAL 959
TNTI WNPMEAFIFTA+NE+Y+LYTFDMRAL
Sbjct: 241 TNTICWNPMEAFIFTAANEDYNLYTFDMRAL 271
>ref|XP_533441.2| PREDICTED: similar to WD repeats and SOF1 domain containing [Canis
familiaris].
Length = 513
Score = 515 bits (1327), Expect = e-146
Identities = 243/256 (94%), Positives = 250/256 (97%)
Frame = +3
Query: 192 ETKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKH 371
+TKLDLQRVPRNYDP LHPFEVP EYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKH
Sbjct: 86 KTKLDLQRVPRNYDPTLHPFEVPIEYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKH 145
Query: 372 PKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQ 551
PKSLA VLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQ
Sbjct: 146 PKSLAAVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQ 205
Query: 552 WKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQVDIWDEQRTNPICSMTWG 731
WKMDGP YGE+EEPLHTILGKTVYTGIDHHWKEA+FATCGQQVDIWDEQRT+PICSMTWG
Sbjct: 206 WKMDGPGYGEEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTSPICSMTWG 265
Query: 732 FDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTIGWNPMEAFIFT 911
FDSISSVKFNPIETFLLGSCASDRN VLYDMRQATPLKKVILDMRTNTI WNPMEAFIFT
Sbjct: 266 FDSISSVKFNPIETFLLGSCASDRNTVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFT 325
Query: 912 ASNEEYHLYTFDMRAL 959
A+NE+Y+LYTFDMRAL
Sbjct: 326 AANEDYNLYTFDMRAL 341
>ref|XP_867899.1| PREDICTED: similar to PRP19/PSO4 homolog (Nuclear matrix protein
200) (hPso4) isoform 2 [Canis familiaris].
Length = 517
Score = 65.1 bits (157), Expect = 9e-11
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 5/189 (2%)
Frame = +3
Query: 309 AKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRG 488
++ LA+L GH V + HP S V S + D +RIW++ C++ ++AHE V G
Sbjct: 263 SEQILATLKGHTKKVTSVVFHP-SQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTG 321
Query: 489 ICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTIL---GKTVYTGIDHHWKEAIF 659
+ G + DD + W G + L T T H IF
Sbjct: 322 LSLHATGDYLLSSSDD---QYWAFSDIQTGRVLTKVTAQLPSPSPTALTCAQFHPDGLIF 378
Query: 660 --ATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQA 833
T Q+ IWD + + + I+S+ F+ + L + A D ++ L+D+R+
Sbjct: 379 GTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWDLRKL 437
Query: 834 TPLKKVILD 860
K + LD
Sbjct: 438 KNFKTLQLD 446
>ref|XP_867913.1| PREDICTED: similar to PRP19/PSO4 homolog (Nuclear matrix protein
200) (hPso4) isoform 4 [Canis familiaris].
Length = 513
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 2/186 (1%)
Frame = +3
Query: 309 AKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRG 488
++ LA+L GH V + HP S V S + D +RIW++ C++ ++AHE V G
Sbjct: 262 SEQILATLKGHTKKVTSVVFHP-SQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTG 320
Query: 489 ICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIF--A 662
+ G + DD + W G + T H IF
Sbjct: 321 LSLHATGDYLLSSSDD---QYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTG 377
Query: 663 TCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPL 842
T Q+ IWD + + + I+S+ F+ + L + A D ++ L+D+R+
Sbjct: 378 TMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWDLRKLKNF 436
Query: 843 KKVILD 860
K + LD
Sbjct: 437 KTLQLD 442
>ref|XP_853782.1| PREDICTED: similar to PRP19/PSO4 homolog (Nuclear matrix protein
200) (hPso4) isoform 1 [Canis familiaris].
Length = 504
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 2/186 (1%)
Frame = +3
Query: 309 AKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRG 488
++ LA+L GH V + HP S V S + D +RIW++ C++ ++AHE V G
Sbjct: 253 SEQILATLKGHTKKVTSVVFHP-SQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTG 311
Query: 489 ICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIF--A 662
+ G + DD + W G + T H IF
Sbjct: 312 LSLHATGDYLLSSSDD---QYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTG 368
Query: 663 TCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPL 842
T Q+ IWD + + + I+S+ F+ + L + A D ++ L+D+R+
Sbjct: 369 TMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWDLRKLKNF 427
Query: 843 KKVILD 860
K + LD
Sbjct: 428 KTLQLD 433
>ref|XP_867905.1| PREDICTED: similar to PRP19/PSO4 homolog (Nuclear matrix protein
200) (hPso4) isoform 3 [Canis familiaris].
Length = 508
Score = 63.2 bits (152), Expect = 4e-10
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 4/188 (2%)
Frame = +3
Query: 309 AKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRG 488
++ LA+L GH V + HP S V S + D +RIW++ C++ ++AHE V G
Sbjct: 258 SEQILATLKGHTKKVTSVVFHP-SQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTG 316
Query: 489 ICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKT--VYTGIDHHWKEAIF- 659
+ G + DD + W G L + +T T H IF
Sbjct: 317 LSLHATGDYLLSSSDD---QYWAFSDIQTG---RVLTKVTDETSGSLTCAQFHPDGLIFG 370
Query: 660 -ATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQAT 836
T Q+ IWD + + + I+S+ F+ + L + A D ++ L+D+R+
Sbjct: 371 TGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWDLRKLK 429
Query: 837 PLKKVILD 860
K + LD
Sbjct: 430 NFKTLQLD 437
>ref|XP_855313.1| PREDICTED: similar to Pleiotropic regulator 1 [Canis familiaris].
Length = 547
Score = 55.8 bits (133), Expect = 6e-08
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = +3
Query: 330 LDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCG 509
+ GH V C+A P + V +G+ D ++IW+L K ++ H VRG+
Sbjct: 233 ISGHLGWVRCIAVEPGNQWFV-TGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRS 291
Query: 510 TSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQ--VD 683
F+ G+DK VK W ++ Y + H L VY G+D H + TC +
Sbjct: 292 PYLFSCGEDKQVKCWDLE---YNKVIRHYHGHL-SAVY-GLDLHPTIDVLVTCSRDSTAR 346
Query: 684 IWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDM 824
IWD + + +++ +++++V+ E ++ + + D I L+D+
Sbjct: 347 IWDVRTKASVHTLSGHTNAVATVRCQAAEPQII-TGSHDTTIRLWDL 392
>ref|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat
protein 1B) (F-box and WD-repeats protein beta-TrCP2)
isoform 8 [Canis familiaris].
Length = 542
Score = 55.8 bits (133), Expect = 6e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 351 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 410
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 411 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 465
Query: 546 KQWKM 560
K W +
Sbjct: 466 KVWDL 470
>ref|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2
[Canis familiaris].
Length = 563
Score = 55.8 bits (133), Expect = 6e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 372 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 431
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 432 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 486
Query: 546 KQWKM 560
K W +
Sbjct: 487 KVWDL 491
>ref|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 7
[Canis familiaris].
Length = 531
Score = 55.8 bits (133), Expect = 6e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 340 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 399
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 400 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 454
Query: 546 KQWKM 560
K W +
Sbjct: 455 KVWDL 459
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,446,617
Number of extensions: 904201
Number of successful extensions: 3108
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 2960
Number of HSP's successfully gapped: 28
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013524
(959 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069108.1| pre-mRNA-processing factor 19 [Bos taurus]. 65 1e-10
Alignment gi|NP_001039827.1| pleiotropic regulator 1 [Bos taurus]. 56 5e-08
Alignment gi|XP_002696296.1| PREDICTED: F-box and WD repeat domain contai... 56 5e-08
Alignment gi|XP_612428.5| PREDICTED: F-box and WD repeat domain containin... 56 5e-08
Alignment gi|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos t... 55 1e-07
Alignment gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta... 54 2e-07
Alignment gi|XP_002695227.1| PREDICTED: Strn4 protein-like [Bos taurus]. 53 5e-07
Alignment gi|XP_874777.3| PREDICTED: zinedin isoform 2 [Bos taurus]. 53 5e-07
Alignment gi|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos ... 51 2e-06
Alignment gi|NP_001099115.1| coatomer subunit alpha [Bos taurus]. 50 2e-06
>ref|NP_001069108.1| pre-mRNA-processing factor 19 [Bos taurus].
Length = 504
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 2/186 (1%)
Frame = +3
Query: 309 AKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRG 488
++ LA+L GH V + HP S V S + D +RIW++ C++ ++AHE V G
Sbjct: 253 SEQILATLKGHTKKVTSVVFHP-SQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTG 311
Query: 489 ICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIF--A 662
+ G + DD + W G + T H IF
Sbjct: 312 LSLHATGDYLLSSSDD---QYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTG 368
Query: 663 TCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPL 842
T Q+ IWD + + + I+S+ F+ + L + A D ++ L+D+R+
Sbjct: 369 TMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWDLRKLKNF 427
Query: 843 KKVILD 860
K + LD
Sbjct: 428 KTLQLD 433
>ref|NP_001039827.1| pleiotropic regulator 1 [Bos taurus].
Length = 513
Score = 55.8 bits (133), Expect = 5e-08
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = +3
Query: 330 LDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCG 509
+ GH V C+A P + V +G+ D ++IW+L K ++ H VRG+
Sbjct: 199 ISGHLGWVRCIAVEPGNQWFV-TGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRS 257
Query: 510 TSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQ--VD 683
F+ G+DK VK W ++ Y + H L VY G+D H + TC +
Sbjct: 258 PYLFSCGEDKQVKCWDLE---YNKVIRHYHGHL-SAVY-GLDLHPTIDVLVTCSRDSTAR 312
Query: 684 IWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDM 824
IWD + + +++ +++++V+ E ++ + + D I L+D+
Sbjct: 313 IWDVRTKASVHTLSGHTNAVATVRCQAAEPQII-TGSHDTTIRLWDL 358
>ref|XP_002696296.1| PREDICTED: F-box and WD repeat domain containing 11 [Bos taurus].
Length = 542
Score = 55.8 bits (133), Expect = 5e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 351 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 410
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 411 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 465
Query: 546 KQWKM 560
K W +
Sbjct: 466 KVWDL 470
>ref|XP_612428.5| PREDICTED: F-box and WD repeat domain containing 11 isoform 1 [Bos
taurus].
Length = 542
Score = 55.8 bits (133), Expect = 5e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 351 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 410
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 411 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 465
Query: 546 KQWKM 560
K W +
Sbjct: 466 KVWDL 470
>ref|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos taurus].
Length = 569
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V+ F+ +L+GH+ G+ CL
Sbjct: 378 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 437
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 438 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 492
Query: 546 KQWKM 560
K W +
Sbjct: 493 KVWDL 497
>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
Length = 627
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Frame = +3
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC 506
+L GH V C+ H K V+SG+ D +R+W++ +C+ + H VR C ++
Sbjct: 376 TLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYD 430
Query: 507 GTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKT--VYTGIDHHWKEAIFATCGQQV 680
G + D VK W E E LHT+ G T VY+ + + + +
Sbjct: 431 GRRVVSGAYDFMVKVWD------PETETCLHTLQGHTNRVYS-LQFDGIHVVSGSLDTSI 483
Query: 681 DIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMR 827
+WD + N I ++T G S++S ++ +L S +D + ++D++
Sbjct: 484 RVWDVETGNCIHTLT-GHQSLTSGM--ELKDNILVSGNADSTVKIWDIK 529
>ref|XP_002695227.1| PREDICTED: Strn4 protein-like [Bos taurus].
Length = 890
Score = 52.8 bits (125), Expect = 5e-07
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 24/207 (11%)
Frame = +3
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKR-----------KCIRTIQAHE 473
+L H DG+ LA H S + +L+ + DG +++WNL K + I +AH
Sbjct: 571 TLRSHYDGIRSLAFH-HSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAHR 629
Query: 474 GFVRGICTRFCGTSFFTVGDDKTVKQWKMDG----PSYGEDEEPLHTIL---GKTVYTGI 632
G V + ++ G D + WK+ P G D L +L G V+ G+
Sbjct: 630 GPVLSVAMGSHSEYCYSGGADARIHSWKIPDLNMDPYDGYDPSVLSHVLEGHGDAVW-GL 688
Query: 633 DHHWKEAIFATCGQQ--VDIWDEQRTNPICSMTWGFDS----ISSVKFNPIETFLLGSCA 794
A+C V IWD ++P C T+ S +SV F E + +
Sbjct: 689 AFSPASQRLASCSADGSVRIWDPSNSSPTCLCTFSTASDHGTPTSVAFTSTEPAHIVASF 748
Query: 795 SDRNIVLYDMRQATPLKKVILDMRTNT 875
+ VLYD+ + L + LD R N+
Sbjct: 749 RSGDTVLYDLEAGSAL--LTLDSRGNS 773
>ref|XP_874777.3| PREDICTED: zinedin isoform 2 [Bos taurus].
Length = 828
Score = 52.8 bits (125), Expect = 5e-07
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 24/207 (11%)
Frame = +3
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKR-----------KCIRTIQAHE 473
+L H DG+ LA H S + +L+ + DG +++WNL K + I +AH
Sbjct: 508 TLRSHYDGIRSLAFH-HSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAHR 566
Query: 474 GFVRGICTRFCGTSFFTVGDDKTVKQWKMDG----PSYGEDEEPLHTIL---GKTVYTGI 632
G V + ++ G D + WK+ P G D L +L G V+ G+
Sbjct: 567 GPVLSVAMGSHSEYCYSGGADARIHSWKIPDLNMDPYDGYDPSVLSHVLEGHGDAVW-GL 625
Query: 633 DHHWKEAIFATCGQQ--VDIWDEQRTNPICSMTWGFDS----ISSVKFNPIETFLLGSCA 794
A+C V IWD ++P C T+ S +SV F E + +
Sbjct: 626 AFSPASQRLASCSADGSVRIWDPSNSSPTCLCTFSTASDHGTPTSVAFTSTEPAHIVASF 685
Query: 795 SDRNIVLYDMRQATPLKKVILDMRTNT 875
+ VLYD+ + L + LD R N+
Sbjct: 686 RSGDTVLYDLEAGSAL--LTLDSRGNS 710
>ref|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos taurus].
Length = 663
Score = 50.8 bits (120), Expect = 2e-06
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 7/185 (3%)
Frame = +3
Query: 258 PREYVRALNATKLERVF---AKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIW 428
P E + A + + RV+ A L +L GH+ + L HP V SG+ D +++W
Sbjct: 74 PEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLW 132
Query: 429 NLTKRKCIRTIQAHEGFVRGICTRFC--GTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHT 602
++ ++ C+ + H VR C RF G + DD TVK W + E P HT
Sbjct: 133 DIRRKGCVFRYRGHSQAVR--CLRFSPDGKWLASAADDHTVKLWDLTAGKM-MSEFPGHT 189
Query: 603 ILGKTVYTGIDHHWKEAIFA--TCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETF 776
++ H E + A + + + WD ++ + + + S+ FNP
Sbjct: 190 ----GPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPDGCC 245
Query: 777 LLGSC 791
L C
Sbjct: 246 LYSGC 250
>ref|NP_001099115.1| coatomer subunit alpha [Bos taurus].
Length = 1224
Score = 50.4 bits (119), Expect = 2e-06
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Frame = +3
Query: 351 VNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVG 530
V L+ HPK +L+ +G +++W+ I H+G VRGI F + G
Sbjct: 12 VKGLSFHPKR-PWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGG 70
Query: 531 DDKTVKQWKMDGPSYGEDEEPLHTILGKTVY---TGIDHHWKEAIFATCGQQVDIWDEQR 701
DD +K W + L T+LG Y T H + + A+ Q + +W+ Q
Sbjct: 71 DDYKIKVWNY------KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQS 124
Query: 702 TNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDM 824
+C +T + +F+P E L+ S + D+ + ++D+
Sbjct: 125 RTCVCVLTGHNHYVMCAQFHPSED-LVVSASLDQTVRVWDI 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,967,327
Number of extensions: 879106
Number of successful extensions: 2993
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2890
Number of HSP's successfully gapped: 14
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013524
(959 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925818.3| PREDICTED: DDB1- and CUL4-associated factor ... 629 0.0
Alignment gi|XP_003355051.1| PREDICTED: DDB1- and CUL4-associated factor ... 610 e-175
Alignment gi|NP_001121929.1| pre-mRNA-processing factor 19 [Sus scrofa]. 65 7e-11
Alignment gi|XP_003129175.1| PREDICTED: pleiotropic regulator 1-like [Sus... 56 3e-08
Alignment gi|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protei... 55 7e-08
Alignment gi|XP_001928732.1| PREDICTED: coatomer subunit alpha isoform 1 ... 50 1e-06
Alignment gi|XP_001928742.1| PREDICTED: coatomer subunit alpha isoform 2 ... 50 1e-06
Alignment gi|XP_003121400.2| PREDICTED: pre-mRNA-processing factor 17 [Su... 50 2e-06
Alignment gi|XP_003127284.1| PREDICTED: LOW QUALITY PROTEIN: striatin-4-l... 50 2e-06
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 49 4e-06
>ref|XP_001925818.3| PREDICTED: DDB1- and CUL4-associated factor 13 [Sus scrofa].
Length = 427
Score = 629 bits (1621), Expect = 0.0
Identities = 300/303 (99%), Positives = 303/303 (100%)
Frame = +3
Query: 51 AEVACVDWGSPSGSRHRGRERKARGIARISSKMKVKMLSRNPDNYVRETKLDLQRVPRNY 230
AEVACVDWGSPSGSRHRGRERKARGIARISSKMKVKMLSRNPDNYVRETKLDLQRVPRNY
Sbjct: 68 AEVACVDWGSPSGSRHRGRERKARGIARISSKMKVKMLSRNPDNYVRETKLDLQRVPRNY 127
Query: 231 DPALHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACD 410
DPALHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACD
Sbjct: 128 DPALHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACD 187
Query: 411 GEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEE 590
GEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEE
Sbjct: 188 GEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEE 247
Query: 591 PLHTILGKTVYTGIDHHWKEAIFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIE 770
PLHTILGKTVYTGIDHHWKEAIFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIE
Sbjct: 248 PLHTILGKTVYTGIDHHWKEAIFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIE 307
Query: 771 TFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTIGWNPMEAFIFTASNEEYHLYTFDM 950
TFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTIGWNPMEAFIFTA+NE+Y+LYTFDM
Sbjct: 308 TFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTIGWNPMEAFIFTAANEDYNLYTFDM 367
Query: 951 RAL 959
RAL
Sbjct: 368 RAL 370
>ref|XP_003355051.1| PREDICTED: DDB1- and CUL4-associated factor 13-like [Sus scrofa].
Length = 544
Score = 610 bits (1574), Expect = e-175
Identities = 292/295 (98%), Positives = 295/295 (100%)
Frame = +3
Query: 75 GSPSGSRHRGRERKARGIARISSKMKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPFE 254
GSPSGSRHRGRERKARGIARISSKMKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPFE
Sbjct: 76 GSPSGSRHRGRERKARGIARISSKMKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPFE 135
Query: 255 VPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNL 434
VPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNL
Sbjct: 136 VPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNL 195
Query: 435 TKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGK 614
TKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGK
Sbjct: 196 TKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGK 255
Query: 615 TVYTGIDHHWKEAIFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCA 794
TVYTGIDHHWKEAIFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCA
Sbjct: 256 TVYTGIDHHWKEAIFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCA 315
Query: 795 SDRNIVLYDMRQATPLKKVILDMRTNTIGWNPMEAFIFTASNEEYHLYTFDMRAL 959
SDRNIVLYDMRQATPLKKVILDMRTNTIGWNPMEAFIFTA+NE+Y+LYTFDMRAL
Sbjct: 316 SDRNIVLYDMRQATPLKKVILDMRTNTIGWNPMEAFIFTAANEDYNLYTFDMRAL 370
>ref|NP_001121929.1| pre-mRNA-processing factor 19 [Sus scrofa].
Length = 504
Score = 64.7 bits (156), Expect = 7e-11
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 2/186 (1%)
Frame = +3
Query: 309 AKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRG 488
++ LA+L GH V + HP S V S + D +RIW++ C++ ++AHE V G
Sbjct: 253 SEQILATLKGHTKKVTSVVFHP-SQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTG 311
Query: 489 ICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIF--A 662
+ G + DD + W G + T H IF
Sbjct: 312 LSLHATGDYLLSSSDD---QYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTG 368
Query: 663 TCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPL 842
T Q+ IWD + + + I+S+ F+ + L + A D ++ L+D+R+
Sbjct: 369 TMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWDLRKLKNF 427
Query: 843 KKVILD 860
K + LD
Sbjct: 428 KTLQLD 433
>ref|XP_003129175.1| PREDICTED: pleiotropic regulator 1-like [Sus scrofa].
Length = 513
Score = 55.8 bits (133), Expect = 3e-08
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = +3
Query: 330 LDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCG 509
+ GH V C+A P + V +G+ D ++IW+L K ++ H VRG+
Sbjct: 199 ISGHLGWVRCIAVEPGNQWFV-TGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRS 257
Query: 510 TSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQ--VD 683
F+ G+DK VK W ++ Y + H L VY G+D H + TC +
Sbjct: 258 PYLFSCGEDKQVKCWDLE---YNKVIRHYHGHL-SAVY-GLDLHPTIDVLVTCSRDSTAR 312
Query: 684 IWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDM 824
IWD + + +++ +++++V+ E ++ + + D I L+D+
Sbjct: 313 IWDVRTKASVHTLSGHTNAVATVRCQAAEPQII-TGSHDTTIRLWDL 358
>ref|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protein 1A, partial [Sus
scrofa].
Length = 497
Score = 54.7 bits (130), Expect = 7e-08
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V+ F+ +L+GH+ G+ CL
Sbjct: 306 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 365
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 366 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 420
Query: 546 KQWKM 560
K W +
Sbjct: 421 KVWDL 425
>ref|XP_001928732.1| PREDICTED: coatomer subunit alpha isoform 1 [Sus scrofa].
Length = 1233
Score = 50.4 bits (119), Expect = 1e-06
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Frame = +3
Query: 351 VNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVG 530
V L+ HPK +L+ +G +++W+ I H+G VRGI F + G
Sbjct: 12 VKGLSFHPKR-PWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGG 70
Query: 531 DDKTVKQWKMDGPSYGEDEEPLHTILGKTVY---TGIDHHWKEAIFATCGQQVDIWDEQR 701
DD +K W + L T+LG Y T H + + A+ Q + +W+ Q
Sbjct: 71 DDYKIKVWNY------KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQS 124
Query: 702 TNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDM 824
+C +T + +F+P E L+ S + D+ + ++D+
Sbjct: 125 RTCVCVLTGHNHYVMCAQFHPSED-LVVSASLDQTVRVWDI 164
>ref|XP_001928742.1| PREDICTED: coatomer subunit alpha isoform 2 [Sus scrofa].
Length = 1224
Score = 50.4 bits (119), Expect = 1e-06
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Frame = +3
Query: 351 VNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVG 530
V L+ HPK +L+ +G +++W+ I H+G VRGI F + G
Sbjct: 12 VKGLSFHPKR-PWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGG 70
Query: 531 DDKTVKQWKMDGPSYGEDEEPLHTILGKTVY---TGIDHHWKEAIFATCGQQVDIWDEQR 701
DD +K W + L T+LG Y T H + + A+ Q + +W+ Q
Sbjct: 71 DDYKIKVWNY------KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQS 124
Query: 702 TNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDM 824
+C +T + +F+P E L+ S + D+ + ++D+
Sbjct: 125 RTCVCVLTGHNHYVMCAQFHPSED-LVVSASLDQTVRVWDI 164
>ref|XP_003121400.2| PREDICTED: pre-mRNA-processing factor 17 [Sus scrofa].
Length = 386
Score = 50.1 bits (118), Expect = 2e-06
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 336 GHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLT-KRKCIRTIQAHEGFVRGICTRFCGT 512
GH GV+ + P S +LS + D ++++W + R+C+RT H VR IC GT
Sbjct: 225 GHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGT 284
Query: 513 SFFTVGDDKTVKQW 554
F + D+ +K W
Sbjct: 285 QFLSAAYDRYLKLW 298
>ref|XP_003127284.1| PREDICTED: LOW QUALITY PROTEIN: striatin-4-like [Sus scrofa].
Length = 760
Score = 49.7 bits (117), Expect = 2e-06
Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 24/204 (11%)
Frame = +3
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKR-----------KCIRTIQAHE 473
+L H DG+ LA H S + +L+ + DG +++WNL K + I +AH
Sbjct: 440 TLRSHYDGIRSLAFH-HSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAHR 498
Query: 474 GFVRGICTRFCGTSFFTVGDDKTVKQWKMD----GPSYGEDEEPLHTIL---GKTVYTGI 632
G V + ++ G D + WK+ P G D L +L G V+ G+
Sbjct: 499 GPVLAVAMGSSSEHCYSGGADARIHSWKIPDLNMDPYDGYDPSVLSHVLEGHGDAVW-GL 557
Query: 633 DHHWKEAIFATCGQQ--VDIWDEQRTNPICSMTWGFDS----ISSVKFNPIETFLLGSCA 794
A+C V IWD ++P C T+ S +SV F E + +
Sbjct: 558 AFSPASQRLASCSADGTVRIWDPSSSSPGCLCTFPTASDHGIPTSVAFTSTEPAHIVTSF 617
Query: 795 SDRNIVLYDMRQATPLKKVILDMR 866
+ VLYD+ + L + LD R
Sbjct: 618 RSGDTVLYDLEAGSAL--LTLDSR 639
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 48.9 bits (115), Expect = 4e-06
Identities = 28/79 (35%), Positives = 39/79 (49%)
Frame = +3
Query: 318 FLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICT 497
FL SL H + V C AK ++S + D V++W+ T R+C+ + H GFV +
Sbjct: 137 FLFSLSQHINWVRC-AKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDF 195
Query: 498 RFCGTSFFTVGDDKTVKQW 554
GT G D TVK W
Sbjct: 196 HPSGTCVAAAGMDNTVKVW 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,449,963
Number of extensions: 559722
Number of successful extensions: 1928
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1859
Number of HSP's successfully gapped: 11
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013524
(959 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_941008.2| DDB1- and CUL4-associated factor 13 [Mus muscul... 536 e-153
Alignment gi|NP_598890.1| pre-mRNA-processing factor 19 [Mus musculus]. 64 1e-10
Alignment gi|NP_058064.2| pleiotropic regulator 1 [Mus musculus]. 56 5e-08
Alignment gi|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musc... 56 5e-08
Alignment gi|NP_001032847.2| F-box/WD repeat-containing protein 1A isofor... 55 1e-07
Alignment gi|NP_033901.1| F-box/WD repeat-containing protein 1A isoform b... 55 1e-07
Alignment gi|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 ... 54 1e-07
Alignment gi|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform... 54 1e-07
Alignment gi|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform... 54 1e-07
Alignment gi|NP_080826.2| p21-activated protein kinase-interacting protei... 53 3e-07
>ref|NP_941008.2| DDB1- and CUL4-associated factor 13 [Mus musculus].
Length = 445
Score = 536 bits (1382), Expect = e-153
Identities = 249/271 (91%), Positives = 265/271 (97%)
Frame = +3
Query: 147 MKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKPFLA 326
MKVKMLSRNPDNYVRETKLD+QRVPRNYDP LHPFEVPREYVRALNATKLERVFAKPFLA
Sbjct: 1 MKVKMLSRNPDNYVRETKLDIQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLA 60
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC 506
SLDGHRDGVNCLAKHPKSLA+VLSGACDGEV+IWNLTKRKCIRTIQAHEGFVRG+CTRFC
Sbjct: 61 SLDGHRDGVNCLAKHPKSLASVLSGACDGEVKIWNLTKRKCIRTIQAHEGFVRGMCTRFC 120
Query: 507 GTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQVDI 686
GTSFFTVGDDKTVKQWKMDGP YGE+EEPL+T+LGKTVYTGIDHHWK+ +FATCGQQVDI
Sbjct: 121 GTSFFTVGDDKTVKQWKMDGPGYGEEEEPLYTVLGKTVYTGIDHHWKDPVFATCGQQVDI 180
Query: 687 WDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMR 866
WDEQRT+P+CSM WGFDSISSVKFNP+ETFLLGSCASDRNIVLYDMRQATPLKKVIL+MR
Sbjct: 181 WDEQRTSPVCSMNWGFDSISSVKFNPVETFLLGSCASDRNIVLYDMRQATPLKKVILEMR 240
Query: 867 TNTIGWNPMEAFIFTASNEEYHLYTFDMRAL 959
TNTI WNPMEAF FTA+NE+Y+LYTFDMRAL
Sbjct: 241 TNTICWNPMEAFNFTAANEDYNLYTFDMRAL 271
>ref|NP_598890.1| pre-mRNA-processing factor 19 [Mus musculus].
Length = 504
Score = 64.3 bits (155), Expect = 1e-10
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 2/182 (1%)
Frame = +3
Query: 321 LASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTR 500
LA+L GH V + HP S V S + D +RIW++ C++ ++AHE V G+
Sbjct: 257 LATLKGHTKKVTSVVFHP-SQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLH 315
Query: 501 FCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIF--ATCGQ 674
G + DD + W G + T H IF T
Sbjct: 316 ATGDYLLSSSDD---QYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDS 372
Query: 675 QVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVI 854
Q+ IWD + + + I+S+ F+ + L + A D ++ L+D+R+ K +
Sbjct: 373 QIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWDLRKLKNFKTLQ 431
Query: 855 LD 860
LD
Sbjct: 432 LD 433
>ref|NP_058064.2| pleiotropic regulator 1 [Mus musculus].
Length = 513
Score = 55.8 bits (133), Expect = 5e-08
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = +3
Query: 330 LDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCG 509
+ GH V C+A P + V +G+ D ++IW+L K ++ H VRG+
Sbjct: 199 ISGHLGWVRCIAVEPGNQWFV-TGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRS 257
Query: 510 TSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQ--VD 683
F+ G+DK VK W ++ Y + H L VY G+D H + TC +
Sbjct: 258 PYLFSCGEDKQVKCWDLE---YNKVIRHYHGHL-SAVY-GLDLHPTLDVLVTCSRDSTAR 312
Query: 684 IWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDM 824
IWD + + +++ +++++V+ E ++ + + D I L+D+
Sbjct: 313 IWDVRTKASVHTLSGHTNAVATVRCQAAEPQII-TGSHDTTIRLWDL 358
>ref|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musculus].
Length = 563
Score = 55.8 bits (133), Expect = 5e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 372 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 431
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 432 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 486
Query: 546 KQWKM 560
K W +
Sbjct: 487 KVWDL 491
>ref|NP_001032847.2| F-box/WD repeat-containing protein 1A isoform a [Mus musculus].
Length = 605
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V+ F+ +L+GH+ G+ CL
Sbjct: 414 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 473
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 474 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 528
Query: 546 KQWKM 560
K W +
Sbjct: 529 KVWDL 533
>ref|NP_033901.1| F-box/WD repeat-containing protein 1A isoform b [Mus musculus].
Length = 569
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V+ F+ +L+GH+ G+ CL
Sbjct: 378 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 437
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 438 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 492
Query: 546 KQWKM 560
K W +
Sbjct: 493 KVWDL 497
>ref|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].
Length = 629
Score = 54.3 bits (129), Expect = 1e-07
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Frame = +3
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC 506
+L GH V C+ H K V+SG+ D +R+W++ +C+ + H VR C ++
Sbjct: 378 TLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYD 432
Query: 507 GTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKT--VYTGIDHHWKEAIFATCGQQV 680
G + D VK W E E LHT+ G T VY+ + + + +
Sbjct: 433 GRRVVSGAYDFMVKVWD------PETETCLHTLQGHTNRVYS-LQFDGIHVVSGSLDTSI 485
Query: 681 DIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMR 827
+WD + N I ++T G S++S ++ +L S +D + ++D++
Sbjct: 486 RVWDVETGNCIHTLT-GHQSLTSGM--ELKDNILVSGNADSTVKIWDIK 531
>ref|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 54.3 bits (129), Expect = 1e-07
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Frame = +3
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC 506
+L GH V C+ H K V+SG+ D +R+W++ +C+ + H VR C ++
Sbjct: 459 TLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYD 513
Query: 507 GTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKT--VYTGIDHHWKEAIFATCGQQV 680
G + D VK W E E LHT+ G T VY+ + + + +
Sbjct: 514 GRRVVSGAYDFMVKVWD------PETETCLHTLQGHTNRVYS-LQFDGIHVVSGSLDTSI 566
Query: 681 DIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMR 827
+WD + N I ++T G S++S ++ +L S +D + ++D++
Sbjct: 567 RVWDVETGNCIHTLT-GHQSLTSGM--ELKDNILVSGNADSTVKIWDIK 612
>ref|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 54.3 bits (129), Expect = 1e-07
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Frame = +3
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC 506
+L GH V C+ H K V+SG+ D +R+W++ +C+ + H VR C ++
Sbjct: 459 TLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYD 513
Query: 507 GTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKT--VYTGIDHHWKEAIFATCGQQV 680
G + D VK W E E LHT+ G T VY+ + + + +
Sbjct: 514 GRRVVSGAYDFMVKVWD------PETETCLHTLQGHTNRVYS-LQFDGIHVVSGSLDTSI 566
Query: 681 DIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMR 827
+WD + N I ++T G S++S ++ +L S +D + ++D++
Sbjct: 567 RVWDVETGNCIHTLT-GHQSLTSGM--ELKDNILVSGNADSTVKIWDIK 612
>ref|NP_080826.2| p21-activated protein kinase-interacting protein 1 [Mus musculus].
Length = 382
Score = 53.1 bits (126), Expect = 3e-07
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +3
Query: 339 HRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSF 518
H V CL H ++SGA DG + IW++ + KC++T +AH G V + G
Sbjct: 81 HAGTVTCLKFHGNQ--HLISGAEDGHICIWDVKRWKCLKTFKAHRGHVTFLSIHPSGKLA 138
Query: 519 FTVGDDKTVKQWKM 560
+VG DKT++ W +
Sbjct: 139 LSVGTDKTLRTWNL 152
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,795,117
Number of extensions: 766981
Number of successful extensions: 2728
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 2623
Number of HSP's successfully gapped: 22
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013524
(959 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056235.4| DDB1- and CUL4-associated factor 13 [Homo sapie... 555 e-158
Alignment gi|NP_055317.1| pre-mRNA-processing factor 19 [Homo sapiens]. 64 2e-10
Alignment gi|NP_001188493.1| pleiotropic regulator 1 isoform 2 [Homo sapi... 57 3e-08
Alignment gi|NP_002660.1| pleiotropic regulator 1 isoform 1 [Homo sapiens]. 57 3e-08
Alignment gi|NP_036432.2| F-box/WD repeat-containing protein 11 isoform C... 56 6e-08
Alignment gi|NP_387449.2| F-box/WD repeat-containing protein 11 isoform A... 56 6e-08
Alignment gi|NP_387448.2| F-box/WD repeat-containing protein 11 isoform B... 56 6e-08
Alignment gi|NP_003930.1| F-box/WD repeat-containing protein 1A isoform 2... 55 1e-07
Alignment gi|NP_378663.1| F-box/WD repeat-containing protein 1A isoform 1... 55 1e-07
Alignment gi|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform... 54 2e-07
>ref|NP_056235.4| DDB1- and CUL4-associated factor 13 [Homo sapiens].
Length = 597
Score = 555 bits (1431), Expect = e-158
Identities = 273/319 (85%), Positives = 287/319 (89%), Gaps = 3/319 (0%)
Frame = +3
Query: 12 RNPQHVAYWS*EEAEVACVDWGSPSGSRHRGRERKAR---GIARISSKMKVKMLSRNPDN 182
R+ HV S +AEVAC G R R E A A +++MKVKMLSRNPDN
Sbjct: 112 RSASHVTGSSLGKAEVAC-------GRRWRWAELLADTSWSPAGRATEMKVKMLSRNPDN 164
Query: 183 YVRETKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCL 362
YVRETKLDLQRVPRNYDPALHPFEVPREY+RALNATKLERVFAKPFLASLDGHRDGVNCL
Sbjct: 165 YVRETKLDLQRVPRNYDPALHPFEVPREYIRALNATKLERVFAKPFLASLDGHRDGVNCL 224
Query: 363 AKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKT 542
AKHP+ LATVLSGACDGEVRIWNLT+R CIRTIQAHEGFVRGICTRFCGTSFFTVGDDKT
Sbjct: 225 AKHPEKLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKT 284
Query: 543 VKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQVDIWDEQRTNPICSM 722
VKQWKMDGP YG++EEPLHTILGKTVYTGIDHHWKEA+FATCGQQVDIWDEQRTNPICSM
Sbjct: 285 VKQWKMDGPGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPICSM 344
Query: 723 TWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTIGWNPMEAF 902
TWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTI WNPMEAF
Sbjct: 345 TWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAF 404
Query: 903 IFTASNEEYHLYTFDMRAL 959
IFTA+NE+Y+LYTFDMRAL
Sbjct: 405 IFTAANEDYNLYTFDMRAL 423
>ref|NP_055317.1| pre-mRNA-processing factor 19 [Homo sapiens].
Length = 504
Score = 64.3 bits (155), Expect = 2e-10
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 2/186 (1%)
Frame = +3
Query: 309 AKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRG 488
++ LA+L GH V + HP S V S + D +RIW++ C++ ++AHE V G
Sbjct: 253 SEQILATLKGHTKKVTSVVFHP-SQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTG 311
Query: 489 ICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIF--A 662
+ G + DD + W G + T H IF
Sbjct: 312 LSLHATGDYLLSSSDD---QYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTG 368
Query: 663 TCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPL 842
T Q+ IWD + + + I+S+ F+ + L + A D ++ L+D+R+
Sbjct: 369 TMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWDLRKLKNF 427
Query: 843 KKVILD 860
K + LD
Sbjct: 428 KTLQLD 433
>ref|NP_001188493.1| pleiotropic regulator 1 isoform 2 [Homo sapiens].
Length = 505
Score = 56.6 bits (135), Expect = 3e-08
Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 4/253 (1%)
Frame = +3
Query: 78 SPSGS--RHRGRERKARGIARISSKMKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPF 251
+PSGS RH G + + A S M+ + + L ++ P P HP
Sbjct: 133 APSGSEYRHPGASDRPQPTAMNSIVMET--------GNTKNSALMAKKAPTMPKPQWHP- 183
Query: 252 EVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWN 431
KL RV + GH V C+A P + V +G+ D ++IW+
Sbjct: 184 -----------PWKLYRV--------ISGHLGWVRCIAVEPGNQWFV-TGSADRTIKIWD 223
Query: 432 LTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILG 611
L K ++ H VRG+ F+ G+DK VK W ++ Y + H L
Sbjct: 224 LASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLE---YNKVIRHYHGHL- 279
Query: 612 KTVYTGIDHHWKEAIFATCGQQ--VDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLG 785
VY G+D H + TC + IWD + + +++ +++++V+ E ++
Sbjct: 280 SAVY-GLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQII- 337
Query: 786 SCASDRNIVLYDM 824
+ + D I L+D+
Sbjct: 338 TGSHDTTIRLWDL 350
>ref|NP_002660.1| pleiotropic regulator 1 isoform 1 [Homo sapiens].
Length = 514
Score = 56.6 bits (135), Expect = 3e-08
Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 4/253 (1%)
Frame = +3
Query: 78 SPSGS--RHRGRERKARGIARISSKMKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPF 251
+PSGS RH G + + A S M+ + + L ++ P P HP
Sbjct: 142 APSGSEYRHPGASDRPQPTAMNSIVMET--------GNTKNSALMAKKAPTMPKPQWHP- 192
Query: 252 EVPREYVRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWN 431
KL RV + GH V C+A P + V +G+ D ++IW+
Sbjct: 193 -----------PWKLYRV--------ISGHLGWVRCIAVEPGNQWFV-TGSADRTIKIWD 232
Query: 432 LTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILG 611
L K ++ H VRG+ F+ G+DK VK W ++ Y + H L
Sbjct: 233 LASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLE---YNKVIRHYHGHL- 288
Query: 612 KTVYTGIDHHWKEAIFATCGQQ--VDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLG 785
VY G+D H + TC + IWD + + +++ +++++V+ E ++
Sbjct: 289 SAVY-GLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQII- 346
Query: 786 SCASDRNIVLYDM 824
+ + D I L+D+
Sbjct: 347 TGSHDTTIRLWDL 359
>ref|NP_036432.2| F-box/WD repeat-containing protein 11 isoform C [Homo sapiens].
Length = 542
Score = 55.8 bits (133), Expect = 6e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 351 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 410
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 411 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 465
Query: 546 KQWKM 560
K W +
Sbjct: 466 KVWDL 470
>ref|NP_387449.2| F-box/WD repeat-containing protein 11 isoform A [Homo sapiens].
Length = 508
Score = 55.8 bits (133), Expect = 6e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 317 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 376
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 377 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 431
Query: 546 KQWKM 560
K W +
Sbjct: 432 KVWDL 436
>ref|NP_387448.2| F-box/WD repeat-containing protein 11 isoform B [Homo sapiens].
Length = 529
Score = 55.8 bits (133), Expect = 6e-08
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V++ F+ +L+GH+ G+ CL
Sbjct: 338 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 397
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 398 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 452
Query: 546 KQWKM 560
K W +
Sbjct: 453 KVWDL 457
>ref|NP_003930.1| F-box/WD repeat-containing protein 1A isoform 2 [Homo sapiens].
Length = 569
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V+ F+ +L+GH+ G+ CL
Sbjct: 378 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 437
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 438 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 492
Query: 546 KQWKM 560
K W +
Sbjct: 493 KVWDL 497
>ref|NP_378663.1| F-box/WD repeat-containing protein 1A isoform 1 [Homo sapiens].
Length = 605
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = +3
Query: 195 TKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKP---FLASLDGHRDGVNCLA 365
T + L+RV + A++ + +Y+ + + + +V+ F+ +L+GH+ G+ CL
Sbjct: 414 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 473
Query: 366 KHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTV 545
+ V+SG+ D +R+W++ C+R ++ HE VR C RF + D +
Sbjct: 474 YRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 528
Query: 546 KQWKM 560
K W +
Sbjct: 529 KVWDL 533
>ref|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].
Length = 589
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Frame = +3
Query: 327 SLDGHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFC 506
+L GH V C+ H K V+SG+ D +R+W++ +C+ + H VR C ++
Sbjct: 338 TLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYD 392
Query: 507 GTSFFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKT--VYTGIDHHWKEAIFATCGQQV 680
G + D VK W E E LHT+ G T VY+ + + + +
Sbjct: 393 GRRVVSGAYDFMVKVWD------PETETCLHTLQGHTNRVYS-LQFDGIHVVSGSLDTSI 445
Query: 681 DIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMR 827
+WD + N I ++T G S++S ++ +L S +D + ++D++
Sbjct: 446 RVWDVETGNCIHTLT-GHQSLTSGM--ELKDNILVSGNADSTVKIWDIK 491
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,900,482
Number of extensions: 893745
Number of successful extensions: 3054
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 2933
Number of HSP's successfully gapped: 22
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013524
(959 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 402 e-109
>Sscrofa_Chr04
|| Length = 143465943
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 215 agttccaagaaactatgatcctgccttacatccttttgaagtcccgcgagaatatgtaag 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36472618 agttccaagaaactatgatcctgccttacatccttttgaagtcccgcgagaatatgtaag 36472559
Query: 275 agctttaaatgctaccaaactggaacgagtgtttgcaaaaccattccttgcttccctgga 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36472558 agctttaaatgctaccaaactggaacgagtgtttgcaaaaccattccttgcttccctgga 36472499
Query: 335 tggtcaccgagatggagtcaattgcttggccaagcatccaaagagcctggccactgtcct 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36472498 tggtcaccgagatggagtcaattgcttggccaagcatccaaagagcctggccactgtcct 36472439
Query: 395 ttctggggcatgtgatggagagg 417
|||||||||||||||||||||||
Sbjct: 36472438 ttctggggcatgtgatggagagg 36472416
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 39 agttgagaagaagcggaagtggcatgtgttgactggggtagcccgtcaggcagccgccac 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36477229 agttgagaagaagcggaagtggcatgtgttgactggggtagcccgtcaggcagccgccac 36477170
Query: 99 aggggtcgggagagaaaggcgcgcggtatcgcaaggattagcagcaaaatgaaggtgaag 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36477169 aggggtcgggagagaaaggcgcgcggtatcgcaaggattagcagcaaaatgaaggtgaag 36477110
Query: 159 atgctgagccggaacccggacaactatgtccgcgaaactaaattggacttacagagag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36477109 atgctgagccggaacccggacaactatgtccgcgaaactaaattggacttacagagag 36477052
Score = 317 bits (160), Expect = 6e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 611 aaagacagtatatacaggaattgatcatcactggaaagaagctatttttgccacatgtgg 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36467628 aaagacagtatatacaggaattgatcatcactggaaagaagctatttttgccacatgtgg 36467569
Query: 671 acagcaagtagacatttgggatgaacaaagaaccaatcctatttgttcaatgacctgggg 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36467568 acagcaagtagacatttgggatgaacaaagaaccaatcctatttgttcaatgacctgggg 36467509
Query: 731 atttgacagtataagcagtgttaagtttaacccaattgag 770
||||||||||||||||||||||||||||||||||||||||
Sbjct: 36467508 atttgacagtataagcagtgttaagtttaacccaattgag 36467469
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 415 aggttagaatttggaacttaactaaacgaaaatgtatccgtacaatacaagcgcatgaag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36471849 aggttagaatttggaacttaactaaacgaaaatgtatccgtacaatacaagcgcatgaag 36471790
Query: 475 gttttgtacgaggaatatgtactcgcttttgcggaacttcttttttcactgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36471789 gttttgtacgaggaatatgtactcgcttttgcggaacttcttttttcactgt 36471738
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 525 gttggtgatgacaaaactgtgaagcagtggaaaatggatggaccaagctatggagaagat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36469443 gttggtgatgacaaaactgtgaagcagtggaaaatggatggaccaagctatggagaagat 36469384
Query: 585 gaggaaccattgcatacaatattaggaaag 614
||||||||||||||||||||||||||||||
Sbjct: 36469383 gaggaaccattgcatacaatattaggaaag 36469354
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 769 agacatttctcttgggaagttgtgcttctgacaggaatatagtgctatatgatatgaggc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36463206 agacatttctcttgggaagttgtgcttctgacaggaatatagtgctatatgatatgaggc 36463147
Query: 829 aagctactcctctgaaaaaggt 850
||||||||||||||||||||||
Sbjct: 36463146 aagctactcctctgaaaaaggt 36463125
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 847 aggtcatcttagatatgagaacaaatacaattggctggaaccctatggaagctttcattt 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36460953 aggtcatcttagatatgagaacaaatacaattggctggaaccctatggaagctttcattt 36460894
Query: 907 ttactgc 913
|||||||
Sbjct: 36460893 ttactgc 36460887
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,786,978
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 7
Length of query: 959
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 938
Effective length of database: 2,808,413,156
Effective search space: 2634291540328
Effective search space used: 2634291540328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)