Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013525
(1978 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686434.1| PREDICTED: ubiquitin specific peptidase 24 [... 769 0.0
Alignment gi|XP_002704027.1| PREDICTED: ubiquitin specific peptidase 24 [... 769 0.0
Alignment gi|XP_002700253.1| PREDICTED: ubiquitin specific peptidase 9, X... 101 3e-21
Alignment gi|NP_001138981.1| ubiquitin specific protease 9, Y-linked [Bos... 100 4e-21
Alignment gi|XP_002700252.1| PREDICTED: ubiquitin specific peptidase 9, X... 99 1e-20
Alignment gi|XP_001787444.1| PREDICTED: ubiquitin specific protease 9, X-... 99 1e-20
>ref|XP_002686434.1| PREDICTED: ubiquitin specific peptidase 24 [Bos taurus].
Length = 2617
Score = 769 bits (1986), Expect = 0.0
Identities = 383/422 (90%), Positives = 390/422 (92%)
Frame = +1
Query: 1 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRIAVATILEKTLDSALCYQDKLKS 180
LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVR+AVATILEKTLDSAL YQDKLKS
Sbjct: 2196 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRVAVATILEKTLDSALFYQDKLKS 2255
Query: 181 XXXXXXXXXXXXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 360
DKDVPENCKNCAQYFFLFNTFVQKQGI+AGDLLL+HSALRHMISFLLG
Sbjct: 2256 LHQLLEVLLALLDKDVPENCKNCAQYFFLFNTFVQKQGIKAGDLLLKHSALRHMISFLLG 2315
Query: 361 ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL 540
A+RQ+ QIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPG+FKQRPPIS+APSSPL
Sbjct: 2316 ASRQSTQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGVFKQRPPISIAPSSPL 2375
Query: 541 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIK 720
LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLH IK
Sbjct: 2376 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHFIK 2435
Query: 721 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 900
NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ
Sbjct: 2436 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 2495
Query: 901 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 1080
CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR
Sbjct: 2496 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 2555
Query: 1081 TISAQDTLAYATALLNEKEQXXXXXXXXXXXXXXXXXRHLQQGSESPMMIGELRSDLDDV 1260
TISAQDTLAYATALLNEKEQ RHLQQGSESPMMIGELRSDLDDV
Sbjct: 2556 TISAQDTLAYATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDV 2615
Query: 1261 DP 1266
DP
Sbjct: 2616 DP 2617
>ref|XP_002704027.1| PREDICTED: ubiquitin specific peptidase 24 [Bos taurus].
Length = 2617
Score = 769 bits (1986), Expect = 0.0
Identities = 383/422 (90%), Positives = 390/422 (92%)
Frame = +1
Query: 1 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRIAVATILEKTLDSALCYQDKLKS 180
LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVR+AVATILEKTLDSAL YQDKLKS
Sbjct: 2196 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRVAVATILEKTLDSALFYQDKLKS 2255
Query: 181 XXXXXXXXXXXXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 360
DKDVPENCKNCAQYFFLFNTFVQKQGI+AGDLLL+HSALRHMISFLLG
Sbjct: 2256 LHQLLEVLLALLDKDVPENCKNCAQYFFLFNTFVQKQGIKAGDLLLKHSALRHMISFLLG 2315
Query: 361 ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL 540
A+RQ+ QIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPG+FKQRPPIS+APSSPL
Sbjct: 2316 ASRQSTQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGVFKQRPPISIAPSSPL 2375
Query: 541 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIK 720
LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLH IK
Sbjct: 2376 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHFIK 2435
Query: 721 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 900
NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ
Sbjct: 2436 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 2495
Query: 901 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 1080
CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR
Sbjct: 2496 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 2555
Query: 1081 TISAQDTLAYATALLNEKEQXXXXXXXXXXXXXXXXXRHLQQGSESPMMIGELRSDLDDV 1260
TISAQDTLAYATALLNEKEQ RHLQQGSESPMMIGELRSDLDDV
Sbjct: 2556 TISAQDTLAYATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDV 2615
Query: 1261 DP 1266
DP
Sbjct: 2616 DP 2617
>ref|XP_002700253.1| PREDICTED: ubiquitin specific peptidase 9, X-linked isoform 2 [Bos
taurus].
Length = 2554
Score = 101 bits (251), Expect = 3e-21
Identities = 104/394 (26%), Positives = 171/394 (43%), Gaps = 41/394 (10%)
Frame = +1
Query: 79 FLLECNVREVRIAVATIL----EKTLDSALCYQ------------DKLKSXXXXXXXXXX 210
+LLEC EVR A A ++ +L C D L
Sbjct: 2103 YLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQAYDNLSLSDHLLRAVLN 2162
Query: 211 XXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHS--ALRHMISFLLGANRQNNQI 384
++V E+ ++ QYF LF + G+ LL+ S A ++S G
Sbjct: 2163 LLRREVSEHGRHLQQYFNLFVMYANL-GVAEKTQLLKLSVPATFMLVSLDEGPGPPIKY- 2220
Query: 385 RRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPL 549
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+
Sbjct: 2221 ------QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNLSQPIMPI 2271
Query: 550 HEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQL 729
+ V +LF+ Y+ +++ E + ++++ +CC+ N FS T+L + Q+
Sbjct: 2272 QQNVADILFVRTS--YVKKII----EDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQV 2325
Query: 730 ETAPPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCY 897
+ +EL+ LL +IL+IED Q R+ K + + +GL + S + R Y
Sbjct: 2326 AYSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAY 2385
Query: 898 QCVKFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQ 1035
QC+K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 2386 QCIKCMVALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPP 2445
Query: 1036 SNVSNETSTGKTFQRTISAQDTLAYATALLNEKE 1137
SNETS G +R+ SA+ TLA A L E+E
Sbjct: 2446 VQ-SNETSNGYFLERSHSARMTLAKACELCPEEE 2478
>ref|NP_001138981.1| ubiquitin specific protease 9, Y-linked [Bos taurus].
Length = 2552
Score = 100 bits (250), Expect = 4e-21
Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 23/268 (8%)
Frame = +1
Query: 403 QAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPLHEEVEA 567
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+ + V
Sbjct: 2219 QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNISQPIMPIQQNVAD 2275
Query: 568 LLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQLETAPPH 747
+LF+ Y+ +++ E + I+++ +CC+ N FS T+L + Q+ + +
Sbjct: 2276 ILFVRTS--YVKKII----EDCSNSEETIKLLRFCCWENPQFSSTVLSELLWQVAYSYTY 2329
Query: 748 ELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCYQCVKFL 915
EL+ LL +IL+IED Q R+ K + + +GL + S + R YQC+K +
Sbjct: 2330 ELRPYLDLLLQILLIEDSWQAHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCM 2389
Query: 916 VTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQSNVSNE 1053
V L CP A + + N W+WAV+WL ++ + W+P SNE
Sbjct: 2390 VALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQ-SNE 2448
Query: 1054 TSTGKTFQRTISAQDTLAYATALLNEKE 1137
TS G +R+ SA+ TLA A L E+E
Sbjct: 2449 TSNGYFLERSHSARMTLAKACELCPEEE 2476
>ref|XP_002700252.1| PREDICTED: ubiquitin specific peptidase 9, X-linked isoform 1 [Bos
taurus].
Length = 2570
Score = 99.4 bits (246), Expect = 1e-20
Identities = 103/393 (26%), Positives = 170/393 (43%), Gaps = 41/393 (10%)
Frame = +1
Query: 79 FLLECNVREVRIAVATIL----EKTLDSALCYQ------------DKLKSXXXXXXXXXX 210
+LLEC EVR A A ++ +L C D L
Sbjct: 2103 YLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQAYDNLSLSDHLLRAVLN 2162
Query: 211 XXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHS--ALRHMISFLLGANRQNNQI 384
++V E+ ++ QYF LF + G+ LL+ S A ++S G
Sbjct: 2163 LLRREVSEHGRHLQQYFNLFVMYANL-GVAEKTQLLKLSVPATFMLVSLDEGPGPPIKY- 2220
Query: 385 RRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPL 549
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+
Sbjct: 2221 ------QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNLSQPIMPI 2271
Query: 550 HEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQL 729
+ V +LF+ Y+ +++ E + ++++ +CC+ N FS T+L + Q+
Sbjct: 2272 QQNVADILFVRTS--YVKKII----EDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQV 2325
Query: 730 ETAPPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCY 897
+ +EL+ LL +IL+IED Q R+ K + + +GL + S + R Y
Sbjct: 2326 AYSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAY 2385
Query: 898 QCVKFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQ 1035
QC+K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 2386 QCIKCMVALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPP 2445
Query: 1036 SNVSNETSTGKTFQRTISAQDTLAYATALLNEK 1134
SNETS G +R+ SA+ TLA A L E+
Sbjct: 2446 VQ-SNETSNGYFLERSHSARMTLAKACELCPEE 2477
>ref|XP_001787444.1| PREDICTED: ubiquitin specific protease 9, X-linked [Bos taurus].
Length = 2491
Score = 99.4 bits (246), Expect = 1e-20
Identities = 103/393 (26%), Positives = 170/393 (43%), Gaps = 41/393 (10%)
Frame = +1
Query: 79 FLLECNVREVRIAVATIL----EKTLDSALCYQ------------DKLKSXXXXXXXXXX 210
+LLEC EVR A A ++ +L C D L
Sbjct: 2024 YLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQAYDNLSLSDHLLRAVLN 2083
Query: 211 XXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHS--ALRHMISFLLGANRQNNQI 384
++V E+ ++ QYF LF + G+ LL+ S A ++S G
Sbjct: 2084 LLRREVSEHGRHLQQYFNLFVMYANL-GVAEKTQLLKLSVPATFMLVSLDEGPGPPIKY- 2141
Query: 385 RRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPL 549
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+
Sbjct: 2142 ------QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNLSQPIMPI 2192
Query: 550 HEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQL 729
+ V +LF+ Y+ +++ E + ++++ +CC+ N FS T+L + Q+
Sbjct: 2193 QQNVADILFVRTS--YVKKII----EDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQV 2246
Query: 730 ETAPPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCY 897
+ +EL+ LL +IL+IED Q R+ K + + +GL + S + R Y
Sbjct: 2247 AYSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAY 2306
Query: 898 QCVKFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQ 1035
QC+K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 2307 QCIKCMVALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPP 2366
Query: 1036 SNVSNETSTGKTFQRTISAQDTLAYATALLNEK 1134
SNETS G +R+ SA+ TLA A L E+
Sbjct: 2367 VQ-SNETSNGYFLERSHSARMTLAKACELCPEE 2398
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,365,732
Number of extensions: 1703916
Number of successful extensions: 5997
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5983
Number of HSP's successfully gapped: 6
Length of query: 659
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 550
Effective length of database: 14,074,782
Effective search space: 7741130100
Effective search space used: 7741130100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013525
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013525
(1978 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536697.2| PREDICTED: similar to Ubiquitin carboxyl-termin... 773 0.0
>ref|XP_536697.2| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 24
(Ubiquitin thiolesterase 24) (Ubiquitin-specific
processing protease 24) (Deubiquitinating enzyme 24)
[Canis familiaris].
Length = 2527
Score = 773 bits (1995), Expect = 0.0
Identities = 386/422 (91%), Positives = 390/422 (92%)
Frame = +1
Query: 1 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRIAVATILEKTLDSALCYQDKLKS 180
LSKSFDACQWLVEYFISSEGRELIKIFLLEC+VREVR+AVATILEKTLDSAL YQDKLKS
Sbjct: 2106 LSKSFDACQWLVEYFISSEGRELIKIFLLECSVREVRVAVATILEKTLDSALFYQDKLKS 2165
Query: 181 XXXXXXXXXXXXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 360
DKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHM SFLLG
Sbjct: 2166 LHQLLEVLLALLDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMTSFLLG 2225
Query: 361 ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL 540
ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPG+FKQRPPISVAPSSPL
Sbjct: 2226 ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGLFKQRPPISVAPSSPL 2285
Query: 541 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIK 720
LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLH IK
Sbjct: 2286 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHFIK 2345
Query: 721 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 900
NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ
Sbjct: 2346 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 2405
Query: 901 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 1080
CVKFLVTLAQKCPAAK+YFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR
Sbjct: 2406 CVKFLVTLAQKCPAAKDYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 2465
Query: 1081 TISAQDTLAYATALLNEKEQXXXXXXXXXXXXXXXXXRHLQQGSESPMMIGELRSDLDDV 1260
TISAQDTLAYATALLNEKEQ RHLQQGSESPMMIGELRSDLDDV
Sbjct: 2466 TISAQDTLAYATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDV 2525
Query: 1261 DP 1266
DP
Sbjct: 2526 DP 2527
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,245,156
Number of extensions: 1747643
Number of successful extensions: 5606
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5604
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 550
Effective length of database: 15,240,880
Effective search space: 8382484000
Effective search space used: 8382484000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013525
(1978 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356500.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 780 0.0
Alignment gi|XP_003360584.1| PREDICTED: probable ubiquitin carboxyl-termi... 101 2e-21
Alignment gi|XP_003360582.1| PREDICTED: probable ubiquitin carboxyl-termi... 101 2e-21
Alignment gi|XP_003135083.2| PREDICTED: probable ubiquitin carboxyl-termi... 100 2e-21
>ref|XP_003356500.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Sus
scrofa].
Length = 1353
Score = 780 bits (2015), Expect = 0.0
Identities = 392/422 (92%), Positives = 392/422 (92%)
Frame = +1
Query: 1 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRIAVATILEKTLDSALCYQDKLKS 180
LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRIAVATILEKTLDSAL YQDKLKS
Sbjct: 932 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRIAVATILEKTLDSALFYQDKLKS 991
Query: 181 XXXXXXXXXXXXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 360
DKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG
Sbjct: 992 LHQLLEVLLALLDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 1051
Query: 361 ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL 540
ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL
Sbjct: 1052 ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL 1111
Query: 541 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIK 720
LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIK
Sbjct: 1112 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIK 1171
Query: 721 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 900
NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ
Sbjct: 1172 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 1231
Query: 901 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 1080
CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR
Sbjct: 1232 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 1291
Query: 1081 TISAQDTLAYATALLNEKEQXXXXXXXXXXXXXXXXXRHLQQGSESPMMIGELRSDLDDV 1260
TISAQDTLAYATALLNEKEQ RHLQQGSESPMMIGELRSDLDDV
Sbjct: 1292 TISAQDTLAYATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDV 1351
Query: 1261 DP 1266
DP
Sbjct: 1352 DP 1353
>ref|XP_003360584.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like
[Sus scrofa].
Length = 872
Score = 101 bits (251), Expect = 2e-21
Identities = 93/331 (28%), Positives = 154/331 (46%), Gaps = 25/331 (7%)
Frame = +1
Query: 220 KDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHS--ALRHMISFLLGANRQNNQIRRW 393
++V E+ ++ QYF LF + GI LL+ S A ++S G
Sbjct: 484 REVSEHGRHLQQYFNLFVMYANL-GIAEKTQLLKLSVPATFMLVSLDEGPGPPIKY---- 538
Query: 394 SSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPLHEE 558
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+ +
Sbjct: 539 ---QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNISQPIMPIQQN 592
Query: 559 VEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQLETA 738
V +LF+ Y+ +++ E + I+++ +CC+ N FS T+L + Q+ +
Sbjct: 593 VADILFVRTS--YVKKII----EDCSNSEETIKLLRFCCWENPQFSSTVLSDLLWQVAYS 646
Query: 739 PPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCYQCV 906
+EL+ LL +IL+IED Q R+ K + + +GL + S + R YQC+
Sbjct: 647 YTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCI 706
Query: 907 KFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQSNV 1044
K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 707 KCMVALFSSCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQ- 765
Query: 1045 SNETSTGKTFQRTISAQDTLAYATALLNEKE 1137
SNETS G +R+ SA+ TLA A L E+E
Sbjct: 766 SNETSNGYFLERSHSARMTLAKACELCPEEE 796
>ref|XP_003360582.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like,
partial [Sus scrofa].
Length = 775
Score = 101 bits (251), Expect = 2e-21
Identities = 93/331 (28%), Positives = 154/331 (46%), Gaps = 25/331 (7%)
Frame = +1
Query: 220 KDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHS--ALRHMISFLLGANRQNNQIRRW 393
++V E+ ++ QYF LF + GI LL+ S A ++S G
Sbjct: 387 REVSEHGRHLQQYFNLFVMYANL-GIAEKTQLLKLSVPATFMLVSLDEGPGPPIKY---- 441
Query: 394 SSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPLHEE 558
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+ +
Sbjct: 442 ---QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNISQPIMPIQQN 495
Query: 559 VEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQLETA 738
V +LF+ Y+ +++ E + I+++ +CC+ N FS T+L + Q+ +
Sbjct: 496 VADILFVRTS--YVKKII----EDCSNSEETIKLLRFCCWENPQFSSTVLSDLLWQVAYS 549
Query: 739 PPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCYQCV 906
+EL+ LL +IL+IED Q R+ K + + +GL + S + R YQC+
Sbjct: 550 YTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCI 609
Query: 907 KFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQSNV 1044
K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 610 KCMVALFSSCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQ- 668
Query: 1045 SNETSTGKTFQRTISAQDTLAYATALLNEKE 1137
SNETS G +R+ SA+ TLA A L E+E
Sbjct: 669 SNETSNGYFLERSHSARMTLAKACELCPEEE 699
>ref|XP_003135083.2| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like
[Sus scrofa].
Length = 1897
Score = 100 bits (250), Expect = 2e-21
Identities = 103/393 (26%), Positives = 168/393 (42%), Gaps = 40/393 (10%)
Frame = +1
Query: 79 FLLECNVREVRIAVATIL----EKTLDSALCYQ------------DKLKSXXXXXXXXXX 210
+LLEC EVR A A ++ +L C D L
Sbjct: 1446 YLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQAYDNLSLSDHLLRAVLN 1505
Query: 211 XXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLL-LRHSALRHMISFLLGANRQNNQIR 387
++V E+ ++ QYF LF + LL L A ++S G
Sbjct: 1506 LLRREVSEHGRHLQQYFNLFVMYANLGVAEKTQLLKLNVPATFMLVSLDEGPGPPIKY-- 1563
Query: 388 RWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPLH 552
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+
Sbjct: 1564 -----QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNLSQPIMPIQ 1615
Query: 553 EEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQLE 732
+ V +LF+ Y+ +++ E + ++++ +CC+ N FS T+L + Q+
Sbjct: 1616 QNVADILFVRTS--YVKKII----EDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQVA 1669
Query: 733 TAPPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCYQ 900
+ +EL+ LL +IL+IED Q R+ K + + +GL + S + R YQ
Sbjct: 1670 YSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQ 1729
Query: 901 CVKFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQS 1038
C+K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 1730 CIKCMVALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPV 1789
Query: 1039 NVSNETSTGKTFQRTISAQDTLAYATALLNEKE 1137
SNETS G +R+ SA+ TLA A L E+E
Sbjct: 1790 Q-SNETSNGYFLERSHSARMTLAKACELCPEEE 1821
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,880,994
Number of extensions: 1085763
Number of successful extensions: 3607
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3595
Number of HSP's successfully gapped: 4
Length of query: 659
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 554
Effective length of database: 8,729,747
Effective search space: 4836279838
Effective search space used: 4836279838
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013525
(1978 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_899048.2| ubiquitin carboxyl-terminal hydrolase 24 [Mus m... 763 0.0
Alignment gi|NP_033507.2| probable ubiquitin carboxyl-terminal hydrolase ... 100 5e-21
Alignment gi|NP_683745.2| ubiquitin specific peptidase 9, Y chromosome [M... 96 1e-19
>ref|NP_899048.2| ubiquitin carboxyl-terminal hydrolase 24 [Mus musculus].
Length = 2617
Score = 763 bits (1971), Expect = 0.0
Identities = 380/422 (90%), Positives = 388/422 (91%)
Frame = +1
Query: 1 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRIAVATILEKTLDSALCYQDKLKS 180
LSKS DACQWLVEYFISSEGREL+K+FLLEC+VREVR+AVATILEKTLDSAL YQDKLKS
Sbjct: 2196 LSKSLDACQWLVEYFISSEGRELVKVFLLECSVREVRVAVATILEKTLDSALFYQDKLKS 2255
Query: 181 XXXXXXXXXXXXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 360
DKDVPENCKNCAQYF LFNTFVQKQGIRAGDLLLRHSALRHMISFLLG
Sbjct: 2256 LHQLLEVLLALLDKDVPENCKNCAQYFSLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 2315
Query: 361 ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL 540
+RQN+QIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL
Sbjct: 2316 VSRQNSQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL 2375
Query: 541 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIK 720
LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLAL+EMVVYCCFCNEHFSFTMLH IK
Sbjct: 2376 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALMEMVVYCCFCNEHFSFTMLHFIK 2435
Query: 721 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 900
NQLETAPPHELKNTFQLLHE+LVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ
Sbjct: 2436 NQLETAPPHELKNTFQLLHEVLVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 2495
Query: 901 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 1080
CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR
Sbjct: 2496 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 2555
Query: 1081 TISAQDTLAYATALLNEKEQXXXXXXXXXXXXXXXXXRHLQQGSESPMMIGELRSDLDDV 1260
TISAQDTLAYATALLNEKEQ RHLQQGSESPMMIGELRSDLDDV
Sbjct: 2556 TISAQDTLAYATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDV 2615
Query: 1261 DP 1266
DP
Sbjct: 2616 DP 2617
>ref|NP_033507.2| probable ubiquitin carboxyl-terminal hydrolase FAF-X [Mus musculus].
Length = 2554
Score = 100 bits (248), Expect = 5e-21
Identities = 104/391 (26%), Positives = 170/391 (43%), Gaps = 38/391 (9%)
Frame = +1
Query: 79 FLLECNVREVRIAVATIL----EKTLDSALCYQ------------DKLKSXXXXXXXXXX 210
+LLEC EVR A A ++ +L C D L
Sbjct: 2103 YLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQAYDNLSLSDHLLRAVLN 2162
Query: 211 XXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHS--ALRHMISFLLGANRQNNQI 384
++V E+ ++ QYF LF + G+ LL+ S A ++S G
Sbjct: 2163 LLRREVSEHGRHLQQYFNLFVMYANL-GVAEKTQLLKLSVPATFMLVSLDEGPGPPIKY- 2220
Query: 385 RRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAP--SSPLLPLHEE 558
Q E G L++ V+ L+ +VSS+ + P P S P++P+ +
Sbjct: 2221 ------QYAELGKLYSVVSQLIRCCNVSSRMQSSINGNPSLPNPFGDPNLSQPIMPIQQN 2274
Query: 559 VEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQLETA 738
V +LF+ Y+ +++ E + ++++ +CC+ N FS T+L + Q+ +
Sbjct: 2275 VVDILFVRTS--YVKKII----EDCSNSDETVKLLRFCCWENPQFSSTVLSELLWQVAYS 2328
Query: 739 PPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCYQCV 906
+EL+ LL +IL+IED Q R+ K + + +GL + S + R YQC+
Sbjct: 2329 YTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCI 2388
Query: 907 KFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQSNV 1044
K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 2389 KCMVALFSSCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQ- 2447
Query: 1045 SNETSTGKTFQRTISAQDTLAYATALLNEKE 1137
SNETS G +R+ SA+ TLA A L E+E
Sbjct: 2448 SNETSNGYFLERSHSARMTLAKACELCPEEE 2478
>ref|NP_683745.2| ubiquitin specific peptidase 9, Y chromosome [Mus musculus].
Length = 2556
Score = 95.9 bits (237), Expect = 1e-19
Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 23/268 (8%)
Frame = +1
Query: 403 QAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPLHEEVEA 567
Q E LH+ V+ L+ VSS+ + PP+ S P++P+ + V
Sbjct: 2225 QYAELSKLHSVVSQLIRCCSVSSRMQSS---INGNPPLPNPFGDPNLSQPIMPIQQNVAD 2281
Query: 568 LLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQLETAPPH 747
+LF+ Y+ +V+ E + ++++++CC+ N FS ++L + Q+ + +
Sbjct: 2282 ILFMRT--TYMKKVI----EDCSNSEDTVKLLLFCCWENPQFSCSVLSELLWQVAHSHAY 2335
Query: 748 ELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCYQCVKFL 915
EL+ LL +I++ ED Q R+ K + ++GL + HS + R YQC+K++
Sbjct: 2336 ELQPYLDLLLQIILFEDSWQAHRIHNALKGIPNDQDGLFDTIQHSKNHHQKRAYQCIKWM 2395
Query: 916 VTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQSNVSNE 1053
VTL CP A + + N + W+WA++WL ++ W+P SNE
Sbjct: 2396 VTLFNSCPVAYQILQGNGDLKNKWTWAMEWLGDELERKPYSGNPQYTYSNWSPPVQ-SNE 2454
Query: 1054 TSTGKTFQRTISAQDTLAYATALLNEKE 1137
T+ G +++ SA+ L A L E++
Sbjct: 2455 TANGYFLEKSHSAKMKLTKACDLYPEED 2482
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,853,032
Number of extensions: 1468780
Number of successful extensions: 4871
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4847
Number of HSP's successfully gapped: 3
Length of query: 659
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 551
Effective length of database: 12,373,671
Effective search space: 6817892721
Effective search space used: 6817892721
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013525
(1978 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056121.2| ubiquitin carboxyl-terminal hydrolase 24 [Homo ... 775 0.0
Alignment gi|NP_001034680.2| probable ubiquitin carboxyl-terminal hydrola... 101 3e-21
Alignment gi|NP_001034679.2| probable ubiquitin carboxyl-terminal hydrola... 99 1e-20
Alignment gi|NP_004645.2| probable ubiquitin carboxyl-terminal hydrolase ... 97 7e-20
>ref|NP_056121.2| ubiquitin carboxyl-terminal hydrolase 24 [Homo sapiens].
Length = 2620
Score = 775 bits (2002), Expect = 0.0
Identities = 387/422 (91%), Positives = 391/422 (92%)
Frame = +1
Query: 1 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRIAVATILEKTLDSALCYQDKLKS 180
LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVR+AVATILEKTLDSAL YQDKLKS
Sbjct: 2199 LSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRVAVATILEKTLDSALFYQDKLKS 2258
Query: 181 XXXXXXXXXXXXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 360
DKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG
Sbjct: 2259 LHQLLEVLLALLDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLG 2318
Query: 361 ANRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISVAPSSPL 540
A+RQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPIS+APSSPL
Sbjct: 2319 ASRQNNQIRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISIAPSSPL 2378
Query: 541 LPLHEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIK 720
LPLHEEVEALLF+SEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLH IK
Sbjct: 2379 LPLHEEVEALLFMSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHFIK 2438
Query: 721 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 900
NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ
Sbjct: 2439 NQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQ 2498
Query: 901 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 1080
CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR
Sbjct: 2499 CVKFLVTLAQKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQR 2558
Query: 1081 TISAQDTLAYATALLNEKEQXXXXXXXXXXXXXXXXXRHLQQGSESPMMIGELRSDLDDV 1260
TISAQDTLAYATALLNEKEQ RHLQQGSESPMMIGELRSDLDDV
Sbjct: 2559 TISAQDTLAYATALLNEKEQSGSSNGSESSPANENGDRHLQQGSESPMMIGELRSDLDDV 2618
Query: 1261 DP 1266
DP
Sbjct: 2619 DP 2620
>ref|NP_001034680.2| probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform 4 [Homo
sapiens].
Length = 2554
Score = 101 bits (251), Expect = 3e-21
Identities = 104/394 (26%), Positives = 171/394 (43%), Gaps = 41/394 (10%)
Frame = +1
Query: 79 FLLECNVREVRIAVATIL----EKTLDSALCYQ------------DKLKSXXXXXXXXXX 210
+LLEC EVR A A ++ +L C D L
Sbjct: 2103 YLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQAYDNLSLSDHLLRAVLN 2162
Query: 211 XXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHS--ALRHMISFLLGANRQNNQI 384
++V E+ ++ QYF LF + G+ LL+ S A ++S G
Sbjct: 2163 LLRREVSEHGRHLQQYFNLFVMYANL-GVAEKTQLLKLSVPATFMLVSLDEGPGPPIKY- 2220
Query: 385 RRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPL 549
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+
Sbjct: 2221 ------QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNLSQPIMPI 2271
Query: 550 HEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQL 729
+ V +LF+ Y+ +++ E + ++++ +CC+ N FS T+L + Q+
Sbjct: 2272 QQNVADILFVRTS--YVKKII----EDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQV 2325
Query: 730 ETAPPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCY 897
+ +EL+ LL +IL+IED Q R+ K + + +GL + S + R Y
Sbjct: 2326 AYSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAY 2385
Query: 898 QCVKFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQ 1035
QC+K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 2386 QCIKCMVALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPP 2445
Query: 1036 SNVSNETSTGKTFQRTISAQDTLAYATALLNEKE 1137
SNETS G +R+ SA+ TLA A L E+E
Sbjct: 2446 VQ-SNETSNGYFLERSHSARMTLAKACELCPEEE 2478
>ref|NP_001034679.2| probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform 3 [Homo
sapiens].
Length = 2570
Score = 99.4 bits (246), Expect = 1e-20
Identities = 103/393 (26%), Positives = 170/393 (43%), Gaps = 41/393 (10%)
Frame = +1
Query: 79 FLLECNVREVRIAVATIL----EKTLDSALCYQ------------DKLKSXXXXXXXXXX 210
+LLEC EVR A A ++ +L C D L
Sbjct: 2103 YLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSSQAYDNLSLSDHLLRAVLN 2162
Query: 211 XXDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHS--ALRHMISFLLGANRQNNQI 384
++V E+ ++ QYF LF + G+ LL+ S A ++S G
Sbjct: 2163 LLRREVSEHGRHLQQYFNLFVMYANL-GVAEKTQLLKLSVPATFMLVSLDEGPGPPIKY- 2220
Query: 385 RRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPL 549
Q E G L++ V+ L+ +VSS+ + PP+ S P++P+
Sbjct: 2221 ------QYAELGKLYSVVSQLIRCCNVSSRMQSS---INGNPPLPNPFGDPNLSQPIMPI 2271
Query: 550 HEEVEALLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQL 729
+ V +LF+ Y+ +++ E + ++++ +CC+ N FS T+L + Q+
Sbjct: 2272 QQNVADILFVRTS--YVKKII----EDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQV 2325
Query: 730 ETAPPHELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCY 897
+ +EL+ LL +IL+IED Q R+ K + + +GL + S + R Y
Sbjct: 2326 AYSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAY 2385
Query: 898 QCVKFLVTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKMSE-----------HYWTPQ 1035
QC+K +V L CP A + + N W+WAV+WL ++ + W+P
Sbjct: 2386 QCIKCMVALFSNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPP 2445
Query: 1036 SNVSNETSTGKTFQRTISAQDTLAYATALLNEK 1134
SNETS G +R+ SA+ TLA A L E+
Sbjct: 2446 VQ-SNETSNGYFLERSHSARMTLAKACELCPEE 2477
>ref|NP_004645.2| probable ubiquitin carboxyl-terminal hydrolase FAF-Y [Homo sapiens].
Length = 2555
Score = 96.7 bits (239), Expect = 7e-20
Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 23/268 (8%)
Frame = +1
Query: 403 QAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPI-----SVAPSSPLLPLHEEVEA 567
Q E G L++ V+ L+ +VSS + PP+ + S P++P+ + V
Sbjct: 2222 QYAELGKLYSVVSQLIRCCNVSSTMQSS---INGNPPLPNPFGDLNLSQPIMPIQQNVLD 2278
Query: 568 LLFLSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHLIKNQLETAPPH 747
+LF+ Y+ +++ E + I+++ +C + N FS T+L + Q+ + +
Sbjct: 2279 ILFVRTS--YVKKII----EDCSNSEDTIKLLRFCSWENPQFSSTVLSELLWQVAYSYTY 2332
Query: 748 ELKNTFQLLHEILVIEDPIQVERV----KFVFETENGLLALMHHSNHVDSSRCYQCVKFL 915
EL+ LL +IL+IED Q R+ K + + +GL + S + R YQC+K +
Sbjct: 2333 ELRPYLDLLFQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCM 2392
Query: 916 VTLAQKCPAAKEYFKEN---SHHWSWAVQWLQKKM-----------SEHYWTPQSNVSNE 1053
V L CP A + + N W+WAV+WL ++ S + W+P SNE
Sbjct: 2393 VALFSSCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQYSYNNWSPPVQ-SNE 2451
Query: 1054 TSTGKTFQRTISAQDTLAYATALLNEKE 1137
T+ G +R+ SA+ TLA A L E+E
Sbjct: 2452 TANGYFLERSHSARMTLAKACELCPEEE 2479
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 70,149,701
Number of extensions: 1729875
Number of successful extensions: 5725
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5711
Number of HSP's successfully gapped: 4
Length of query: 659
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 550
Effective length of database: 14,704,088
Effective search space: 8087248400
Effective search space used: 8087248400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013525
(1978 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1223 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1223 bits (617), Expect = 0.0
Identities = 725/764 (94%), Gaps = 6/764 (0%)
Strand = Plus / Plus
Query: 1205 agggttctgagtcgcccatgatgatcggcgagttaaggagtgacctggacgacgtcgatc 1264
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 145447953 agggttctgagtcgcccatgatgatcggcgagttgaggagtgacctggacgacgtcgatc 145448012
Query: 1265 cctaggggacctgccccgcacactctaagaagtcacgtcccagttactggatgctcagca 1324
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 145448013 cctaggggacctgccccgcacactctaaggagtcacgtcccagttactggatgctcagca 145448072
Query: 1325 cctttctgaactccacatctcatccttgaactctttagaagagctgggaagctggaggat 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145448073 cctttctgaactccacatctcatccttgaactctttagaagagctgggaagctggaggat 145448132
Query: 1385 caggtgtttttaaagagagcgcttgtcagcccctggagaggcctgggggccgcctggcag 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145448133 caggtgtttttaaagagagcgcttgtcagcccctggagaggcctgggggccgcctggcag 145448192
Query: 1445 caggagaactcggcctgtggatccgctgtcccggggcccagcccctacgcggattaacat 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145448193 caggagaactcggcctgtggatccgctgtcccggggcccagcccctacgcggattaacat 145448252
Query: 1505 ttccgtggagattttaggaaataaagccggtgacagactgttttgttacatgaacattca 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145448253 ttccgtggagattttaggaaataaagccggtgacagactgttttgttacatgaacattca 145448312
Query: 1565 agagtgagtgaggataaagctgttgctttctctgtgatgctattnnnnnnnnnnnttcct 1624
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 145448313 agagtgagtgaggataaagctgttgctttctctgtgatgctatt--aaaaaaaaattcct 145448370
Query: 1625 ttggtttttatattnnnnnnnnngcaatctgcctttagatatgtgggggcaaatttttaa 1684
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 145448371 ttggtttttatatt-aaaaaaaagcaatctgcctttagatatgtgggggcaaatttttaa 145448429
Query: 1685 tcttgcagtaacattgaataggaatatccaatttaaaatgttgtaaagatatgtgatt-n 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145448430 tcttgcagtaacattgaataggaatatccaatttaaaatgttgtaaagatatgtgattaa 145448489
Query: 1744 nnnnnnnttccttttcgctgtaaaatagtagttaaagaattcggtttacacagacctttg 1803
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145448490 aaaaaaattccttttcgctgtaaaatagtagttaaagaattcggtttacacagacctttg 145448549
Query: 1804 tatttaatatgtctccctattngtatagaaattcaggtgggtctggatgagagccctggg 1863
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 145448550 tatttaatatgtctccctatttgtatagaatttcaggtgggtctggatgagagccctggg 145448609
Query: 1864 cataaacttggatcttgatgatatgttaccagnaccagaaattgggaaatttantaagct 1923
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 145448610 cataaacttggatcttgatgatatgttaccaggaccagaaattgggaaatttattaagct 145448669
Query: 1924 cttgaaagtatttttctgaagat-attgagatttgaagagcaat 1966
|||||||||||||||||| |||| ||||||||| |||||||||
Sbjct: 145448670 cttgaaagtatttttctg-agataattgagattgaaagagcaat 145448712
Score = 250 bits (126), Expect = 3e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 484 gctcctggtatatttaaacaacggccgccaattagcgttgccccctcaagccccctgctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145433667 gctcctggtatatttaaacaacggccgccaattagcgttgccccctcaagccccctgctg 145433726
Query: 544 cccctccacgaggaagtcgaagccctgctgttcttgtctgaagggaagccttacctgtta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145433727 cccctccacgaggaagtcgaagccctgctgttcttgtctgaagggaagccttacctgtta 145433786
Query: 604 gaggtg 609
||||||
Sbjct: 145433787 gaggtg 145433792
Score = 236 bits (119), Expect = 4e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 170 agttaaagagccttcaccagttgctggaggtccttcttgctctgttggataaagatgtcc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145429816 agttaaagagccttcaccagttgctggaggtccttcttgctctgttggataaagatgtcc 145429875
Query: 230 ctgaaaattgtaaaaactgtgctcagtactttttcctgttcaacacttttgtacaaaag 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145429876 ctgaaaattgtaaaaactgtgctcagtactttttcctgttcaacacttttgtacaaaag 145429934
Score = 228 bits (115), Expect = 9e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1093 caggacacactggcttatgccacagctctgctgaatgagaaagagcagtcgggaagcagt 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145446779 caggacacactggcttatgccacagctctgctgaatgagaaagagcagtcgggaagcagt 145446838
Query: 1153 aacgggtcggagagcagtccggcgaatgagaacggagagaggcacttacagcagg 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145446839 aacgggtcggagagcagtccggcgaatgagaacggagagaggcacttacagcagg 145446893
Score = 222 bits (112), Expect = 6e-55
Identities = 115/116 (99%)
Strand = Plus / Plus
Query: 605 aggtgatgttcgctctgcgggagctgaccggctcgctgctggcgctcatcgagatggtgg 664
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 145434274 aggtgatgttcgctctgcgggagctgaccggctcgctgctggcgctcattgagatggtgg 145434333
Query: 665 tgtactgctgcttctgtaacgagcacttctccttcaccatgctgcatctcattaag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145434334 tgtactgctgcttctgtaacgagcacttctccttcaccatgctgcatctcattaag 145434389
Score = 202 bits (102), Expect = 5e-49
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 379 cagatccgccgatggagttcagctcaagcacgagaatttgggaaccttcacaacacagtg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145432452 cagatccgccgatggagttcagctcaagcacgagaatttgggaaccttcacaacacagtg 145432511
Query: 439 gcattacttgtcttgcattcagatgtatcttcccaaaggaacgttg 484
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 145432512 gcattacttgtcttgcattcagatgtgtcttcccaaaggaacgttg 145432557
Score = 184 bits (93), Expect = 1e-43
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 75 gattttcttactggagtgcaatgtgagagaagtccgcatcgctgtggccaccattctgga 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145427357 gattttcttactggagtgcaatgtgagagaagtccgcatcgctgtggccaccattctgga 145427416
Query: 135 gaaaaccctagacagtgccttgtgttatcaggataag 171
||||||||||||||||||||||| |||||||||||||
Sbjct: 145427417 gaaaaccctagacagtgccttgttttatcaggataag 145427453
Score = 180 bits (91), Expect = 2e-42
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 287 agcaaggaattagggccggagatcttcttctgaggcattcagccctgcgacacatgatta 346
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 145430597 agcaaggaattagggccggagatcttcttctgaggcattcagctctgcgacacatgatta 145430656
Query: 347 gcttcctcctgggggccaatcggcaaaacaatcag 381
|||||||||||||||||||||||||||||||||||
Sbjct: 145430657 gcttcctcctgggggccaatcggcaaaacaatcag 145430691
Score = 178 bits (90), Expect = 8e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1007 agatgtcagaacattattggacaccgcagagtaatgtctctaatgaaacatcaactggaa 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145446372 agatgtcagaacattattggacaccgcagagtaatgtctctaatgaaacatcaactggaa 145446431
Query: 1067 aaacctttcagcgaacgatttcagctcagg 1096
||||||||||||||||||||||||||||||
Sbjct: 145446432 aaacctttcagcgaacgatttcagctcagg 145446461
Score = 165 bits (83), Expect = 1e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 852 agctctgatgcaccacagtaatcatgtggacagcagtcgctgctaccagtgtgtcaaatt 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145440497 agctctgatgcaccacagtaatcatgtggacagcagtcgctgctaccagtgtgtcaaatt 145440556
Query: 912 tcttgtaactcttgctcaaaagt 934
|||||||||||||||||||||||
Sbjct: 145440557 tcttgtaactcttgctcaaaagt 145440579
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 933 gtgtccagctgctaaagaatactttaaggagaattcccaccactggagttgggctgtaca 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145445879 gtgtccagctgctaaagaatactttaaggagaattcccaccactggagttgggctgtaca 145445938
Query: 993 gtggctacagaaaaag 1008
||||||||||||||||
Sbjct: 145445939 gtggctacagaaaaag 145445954
Score = 149 bits (75), Expect = 7e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 ctttcaaaaagttttgatgcttgtcagtggctagttgaatattttattagttctgaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145424725 ctttcaaaaagttttgatgcttgtcagtggctagttgaatattttattagttctgaagga 145424784
Query: 61 cgagaattgataaag 75
|||||||||||||||
Sbjct: 145424785 cgagaattgataaag 145424799
Score = 139 bits (70), Expect = 7e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 719 agaaccaactagaaacagctccaccccatgagttaaagaatacgttccaactgcttcatg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145436767 agaaccaactagaaacagctccaccccatgagttaaagaatacgttccaactgcttcatg 145436826
Query: 779 agatactggt 788
||||||||||
Sbjct: 145436827 agatactggt 145436836
Score = 135 bits (68), Expect = 1e-28
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 786 ggtcattgaggatcccatacaagtagagcgagtcaaatttgtgtttgagacagaaaacgg 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145438940 ggtcattgaggatcccatacaagtagagcgagtcaaatttgtgtttgagacagaaaacgg 145438999
Query: 846 attactag 853
||||||||
Sbjct: 145439000 attactag 145439007
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,993,707
Number of extensions: 525
Number of successful extensions: 525
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 16
Length of query: 1978
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1956
Effective length of database: 2,808,408,574
Effective search space: 5493247170744
Effective search space used: 5493247170744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)