Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013527
(950 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178120.1| zinc finger protein 36, C3H type-like 2 [Bos... 358 5e-99
Alignment gi|XP_002691342.1| PREDICTED: zinc finger protein 36, C3H type-... 358 5e-99
Alignment gi|NP_001094704.1| butyrate response factor 1 [Bos taurus]. 176 2e-44
Alignment gi|NP_776918.1| tristetraprolin [Bos taurus]. 112 4e-25
>ref|NP_001178120.1| zinc finger protein 36, C3H type-like 2 [Bos taurus].
Length = 485
Score = 358 bits (918), Expect = 5e-99
Identities = 176/216 (81%), Positives = 177/216 (81%)
Frame = +2
Query: 302 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 481
MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVA APSSGFTPGFLRRHSASN
Sbjct: 1 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVATAPSSGFTPGFLRRHSASN 60
Query: 482 LHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENKFR 661
LHALAHPAPSPGSCSPKFP TLKEPSGGGGTALLNKENKFR
Sbjct: 61 LHALAHPAPSPGSCSPKFP----GAANGSAAAGGSASYGTLKEPSGGGGTALLNKENKFR 116
Query: 662 DRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 841
DRSFSENG+R INSTRYKTELCRPFEESGTCKYGEKCQFAHGF
Sbjct: 117 DRSFSENGERSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 176
Query: 842 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 177 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 212
>ref|XP_002691342.1| PREDICTED: zinc finger protein 36, C3H type-like 2 [Bos taurus].
Length = 486
Score = 358 bits (918), Expect = 5e-99
Identities = 176/216 (81%), Positives = 177/216 (81%)
Frame = +2
Query: 302 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 481
MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVA APSSGFTPGFLRRHSASN
Sbjct: 1 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVATAPSSGFTPGFLRRHSASN 60
Query: 482 LHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENKFR 661
LHALAHPAPSPGSCSPKFP TLKEPSGGGGTALLNKENKFR
Sbjct: 61 LHALAHPAPSPGSCSPKFP----GAANGSAAAGGSASYGTLKEPSGGGGTALLNKENKFR 116
Query: 662 DRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 841
DRSFSENG+R INSTRYKTELCRPFEESGTCKYGEKCQFAHGF
Sbjct: 117 DRSFSENGERSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 176
Query: 842 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 177 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 212
>ref|NP_001094704.1| butyrate response factor 1 [Bos taurus].
Length = 338
Score = 176 bits (447), Expect = 2e-44
Identities = 104/222 (46%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Frame = +2
Query: 302 MSTTLLSA-FYDI-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFTPGFLR 463
M+TTL+SA +D+ + LCK K L N + + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYSTPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 464 RHSASNLHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLN 643
RHS + + H L G AL +
Sbjct: 52 RHSVTLPSSKFHQ------------------------------NQLLSSLKGEPAPALSS 81
Query: 644 KENKFRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKC 823
++++FRDRSFSE G+R +NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGERLLPPQKQPGSGQ------VNSSRYKTELCRPFEENGACKYGDKC 135
Query: 824 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>ref|NP_776918.1| tristetraprolin [Bos taurus].
Length = 324
Score = 112 bits (281), Expect = 4e-25
Identities = 48/66 (72%), Positives = 52/66 (78%)
Frame = +2
Query: 752 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 931
S+RYKTELCR F ESG C+YG KCQFAHG ELR +RHPKYKTELC F+ G CPYG
Sbjct: 99 SSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQASRHPKYKTELCHKFYLQGRCPYGS 158
Query: 932 RCHFIH 949
RCHFIH
Sbjct: 159 RCHFIH 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,723,231
Number of extensions: 777878
Number of successful extensions: 4394
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4336
Number of HSP's successfully gapped: 5
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013527
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013527
(950 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864031.1| PREDICTED: similar to butyrate response factor ... 347 7e-96
Alignment gi|XP_864013.1| PREDICTED: similar to Butyrate response factor ... 347 7e-96
Alignment gi|XP_851565.1| PREDICTED: similar to butyrate response factor ... 347 7e-96
Alignment gi|XP_547870.1| PREDICTED: similar to Butyrate response factor ... 178 6e-45
Alignment gi|XP_866855.1| PREDICTED: similar to Butyrate response factor ... 178 6e-45
Alignment gi|XP_853070.1| PREDICTED: similar to Butyrate response factor ... 178 6e-45
Alignment gi|XP_541624.2| PREDICTED: similar to Tristetraproline (TTP) (Z... 107 2e-23
>ref|XP_864031.1| PREDICTED: similar to butyrate response factor 2 isoform 3 [Canis
familiaris].
Length = 456
Score = 347 bits (891), Expect = 7e-96
Identities = 175/221 (79%), Positives = 176/221 (79%), Gaps = 5/221 (2%)
Frame = +2
Query: 302 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 481
MSTTLLSAFYDIDFLCKTEKSLANLNLN MLDKKAVGTPVAAAPSSGFTPGFLRRHSASN
Sbjct: 1 MSTTLLSAFYDIDFLCKTEKSLANLNLN-MLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 59
Query: 482 LHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENKFR 661
LHALAHPAPS GSCSPKFP TLKEPSGGGGTALLNKENKFR
Sbjct: 60 LHALAHPAPSAGSCSPKFPGAANGGSCGGGAAGGPASYGTLKEPSGGGGTALLNKENKFR 119
Query: 662 DRSFSENGDRXXXXXXXXXXXXXXXXXX-----INSTRYKTELCRPFEESGTCKYGEKCQ 826
DRSFSENG+R INSTRYKTELCRPFEESGTCKYGEKCQ
Sbjct: 120 DRSFSENGERSQHLLHLQQQQQQKGGGGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ 179
Query: 827 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 180 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 220
>ref|XP_864013.1| PREDICTED: similar to Butyrate response factor 2 (TIS11D protein)
(EGF-response factor 2) (ERF-2) isoform 2 [Canis
familiaris].
Length = 407
Score = 347 bits (891), Expect = 7e-96
Identities = 175/221 (79%), Positives = 176/221 (79%), Gaps = 5/221 (2%)
Frame = +2
Query: 302 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 481
MSTTLLSAFYDIDFLCKTEKSLANLNLN MLDKKAVGTPVAAAPSSGFTPGFLRRHSASN
Sbjct: 1 MSTTLLSAFYDIDFLCKTEKSLANLNLN-MLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 59
Query: 482 LHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENKFR 661
LHALAHPAPS GSCSPKFP TLKEPSGGGGTALLNKENKFR
Sbjct: 60 LHALAHPAPSAGSCSPKFPGAANGGSCGGGAAGGPASYGTLKEPSGGGGTALLNKENKFR 119
Query: 662 DRSFSENGDRXXXXXXXXXXXXXXXXXX-----INSTRYKTELCRPFEESGTCKYGEKCQ 826
DRSFSENG+R INSTRYKTELCRPFEESGTCKYGEKCQ
Sbjct: 120 DRSFSENGERSQHLLHLQQQQQQKGGGGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ 179
Query: 827 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 180 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 220
>ref|XP_851565.1| PREDICTED: similar to butyrate response factor 2 isoform 1 [Canis
familiaris].
Length = 491
Score = 347 bits (891), Expect = 7e-96
Identities = 175/221 (79%), Positives = 176/221 (79%), Gaps = 5/221 (2%)
Frame = +2
Query: 302 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 481
MSTTLLSAFYDIDFLCKTEKSLANLNLN MLDKKAVGTPVAAAPSSGFTPGFLRRHSASN
Sbjct: 1 MSTTLLSAFYDIDFLCKTEKSLANLNLN-MLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 59
Query: 482 LHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENKFR 661
LHALAHPAPS GSCSPKFP TLKEPSGGGGTALLNKENKFR
Sbjct: 60 LHALAHPAPSAGSCSPKFPGAANGGSCGGGAAGGPASYGTLKEPSGGGGTALLNKENKFR 119
Query: 662 DRSFSENGDRXXXXXXXXXXXXXXXXXX-----INSTRYKTELCRPFEESGTCKYGEKCQ 826
DRSFSENG+R INSTRYKTELCRPFEESGTCKYGEKCQ
Sbjct: 120 DRSFSENGERSQHLLHLQQQQQQKGGGGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ 179
Query: 827 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 180 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 220
>ref|XP_547870.1| PREDICTED: similar to Butyrate response factor 1 (TIS11B protein)
isoform 1 [Canis familiaris].
Length = 338
Score = 178 bits (452), Expect = 6e-45
Identities = 105/222 (47%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Frame = +2
Query: 302 MSTTLLSA-FYDI-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFTPGFLR 463
M+TTL+SA +D+ + LCK K L N N + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYNTPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 464 RHSASNLHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLN 643
RHS + + H L G AL +
Sbjct: 52 RHSVTLPSSKFHQ------------------------------NQLLSSLKGEPAPALSS 81
Query: 644 KENKFRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKC 823
++++FRDRSFSE G+R +NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGERLLPTQKQPGSGQ------VNSSRYKTELCRPFEENGACKYGDKC 135
Query: 824 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>ref|XP_866855.1| PREDICTED: similar to Butyrate response factor 1 (TIS11B protein)
isoform 4 [Canis familiaris].
Length = 338
Score = 178 bits (452), Expect = 6e-45
Identities = 105/222 (47%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Frame = +2
Query: 302 MSTTLLSA-FYDI-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFTPGFLR 463
M+TTL+SA +D+ + LCK K L N N + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYNTPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 464 RHSASNLHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLN 643
RHS + + H L G AL +
Sbjct: 52 RHSVTLPSSKFHQ------------------------------NQLLSSLKGEPAPALSS 81
Query: 644 KENKFRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKC 823
++++FRDRSFSE G+R +NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGERLLPTQKQPGSGQ------VNSSRYKTELCRPFEENGACKYGDKC 135
Query: 824 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>ref|XP_853070.1| PREDICTED: similar to Butyrate response factor 1 (TIS11B protein)
isoform 3 [Canis familiaris].
Length = 338
Score = 178 bits (452), Expect = 6e-45
Identities = 105/222 (47%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Frame = +2
Query: 302 MSTTLLSA-FYDI-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFTPGFLR 463
M+TTL+SA +D+ + LCK K L N N + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYNTPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 464 RHSASNLHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLN 643
RHS + + H L G AL +
Sbjct: 52 RHSVTLPSSKFHQ------------------------------NQLLSSLKGEPAPALSS 81
Query: 644 KENKFRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKC 823
++++FRDRSFSE G+R +NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGERLLPTQKQPGSGQ------VNSSRYKTELCRPFEENGACKYGDKC 135
Query: 824 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>ref|XP_541624.2| PREDICTED: similar to Tristetraproline (TTP) (Zinc finger protein
36 homolog) (Zfp-36) (TIS11A protein) (TIS11) (Growth
factor-inducible nuclear protein NUP475) (G0/G1 switch
regulatory protein 24) [Canis familiaris].
Length = 277
Score = 107 bits (266), Expect = 2e-23
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = +2
Query: 752 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 931
S+RYKTELCR F ESG C+YG KCQFAHG ELR +RHPKYKT++C F+ G CPYG
Sbjct: 104 SSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQASRHPKYKTKVCHKFYLQGGCPYGS 163
Query: 932 RCHFI 946
RCHFI
Sbjct: 164 RCHFI 168
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,936,092
Number of extensions: 771383
Number of successful extensions: 4388
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4333
Number of HSP's successfully gapped: 10
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013527
(950 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125238.1| PREDICTED: zinc finger protein 36, C3H1 type... 365 e-101
Alignment gi|XP_001924343.1| PREDICTED: zinc finger protein 36, C3H1 type... 176 1e-44
Alignment gi|XP_003356787.1| PREDICTED: zinc finger protein 36, C3H1 type... 176 1e-44
Alignment gi|XP_003355955.1| PREDICTED: tristetraprolin-like [Sus scrofa]. 112 2e-25
Alignment gi|NP_001161891.1| tristetraprolin [Sus scrofa]. 112 2e-25
>ref|XP_003125238.1| PREDICTED: zinc finger protein 36, C3H1 type-like 2-like [Sus
scrofa].
Length = 493
Score = 365 bits (937), Expect = e-101
Identities = 178/216 (82%), Positives = 178/216 (82%)
Frame = +2
Query: 302 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 481
MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN
Sbjct: 1 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 60
Query: 482 LHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENKFR 661
LHALAHPAPSPGSCSPKFP TLKEPSGGGGTALLNKENKFR
Sbjct: 61 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAASGPASYGTLKEPSGGGGTALLNKENKFR 120
Query: 662 DRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 841
DRSFSENGDR INSTRYKTELCRPFEESGTCKYGEKCQFAHGF
Sbjct: 121 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 180
Query: 842 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 181 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 216
>ref|XP_001924343.1| PREDICTED: zinc finger protein 36, C3H1 type-like 1-like [Sus
scrofa].
Length = 338
Score = 176 bits (447), Expect = 1e-44
Identities = 104/222 (46%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Frame = +2
Query: 302 MSTTLLSA-FYDI-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFTPGFLR 463
M+TTL+SA +D+ + LCK K L N + + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYSTPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 464 RHSASNLHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLN 643
RHS + + H L G AL +
Sbjct: 52 RHSVTLPSSKFHQ------------------------------NQLLSSLKGEPAPALSS 81
Query: 644 KENKFRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKC 823
++++FRDRSFSE G+R +NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGERLLPTQKQPGSGQ------VNSSRYKTELCRPFEENGACKYGDKC 135
Query: 824 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>ref|XP_003356787.1| PREDICTED: zinc finger protein 36, C3H1 type-like 1-like [Sus
scrofa].
Length = 338
Score = 176 bits (447), Expect = 1e-44
Identities = 104/222 (46%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Frame = +2
Query: 302 MSTTLLSA-FYDI-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFTPGFLR 463
M+TTL+SA +D+ + LCK K L N + + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYSTPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 464 RHSASNLHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLN 643
RHS + + H L G AL +
Sbjct: 52 RHSVTLPSSKFHQ------------------------------NQLLSSLKGEPAPALSS 81
Query: 644 KENKFRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKC 823
++++FRDRSFSE G+R +NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGERLLPTQKQPGSGQ------VNSSRYKTELCRPFEENGACKYGDKC 135
Query: 824 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>ref|XP_003355955.1| PREDICTED: tristetraprolin-like [Sus scrofa].
Length = 326
Score = 112 bits (281), Expect = 2e-25
Identities = 48/66 (72%), Positives = 52/66 (78%)
Frame = +2
Query: 752 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 931
S+RYKTELCR F ESG C+YG KCQFAHG ELR +RHPKYKTELC F+ G CPYG
Sbjct: 100 SSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQASRHPKYKTELCHKFYLQGRCPYGS 159
Query: 932 RCHFIH 949
RCHFIH
Sbjct: 160 RCHFIH 165
>ref|NP_001161891.1| tristetraprolin [Sus scrofa].
Length = 326
Score = 112 bits (281), Expect = 2e-25
Identities = 48/66 (72%), Positives = 52/66 (78%)
Frame = +2
Query: 752 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 931
S+RYKTELCR F ESG C+YG KCQFAHG ELR +RHPKYKTELC F+ G CPYG
Sbjct: 100 SSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQASRHPKYKTELCHKFYLQGRCPYGS 159
Query: 932 RCHFIH 949
RCHFIH
Sbjct: 160 RCHFIH 165
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,486,644
Number of extensions: 546151
Number of successful extensions: 2713
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2670
Number of HSP's successfully gapped: 7
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013527
(950 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001806.1| zinc finger protein 36, C3H1 type-like 2 [Mu... 343 1e-94
Alignment gi|NP_031590.1| zinc finger protein 36, C3H1 type-like 1 [Mus m... 175 4e-44
Alignment gi|NP_001009549.1| zinc finger protein 36-like 3 [Mus musculus]. 142 5e-34
Alignment gi|NP_035886.1| tristetraprolin [Mus musculus]. 111 9e-25
>ref|NP_001001806.1| zinc finger protein 36, C3H1 type-like 2 [Mus musculus].
Length = 484
Score = 343 bits (879), Expect = 1e-94
Identities = 169/218 (77%), Positives = 172/218 (78%), Gaps = 2/218 (0%)
Frame = +2
Query: 302 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 481
MSTTLLS FYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSS FTPGFLRRHSASN
Sbjct: 1 MSTTLLSPFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSSFTPGFLRRHSASN 60
Query: 482 LHALAHPAPSPGSCSPKFP--XXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENK 655
LHALAHP PSPGSCSPKFP LKEPSGG GTAL+ KE+K
Sbjct: 61 LHALAHPVPSPGSCSPKFPGAPNGGGSSCGPAGGGGLASYGQLKEPSGGSGTALVTKESK 120
Query: 656 FRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKCQFAH 835
FRDRSFSENG+R INSTRYKTELCRPFEESGTCKYGEKCQFAH
Sbjct: 121 FRDRSFSENGERSQHLLHLQQQQKGGSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAH 180
Query: 836 GFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
GFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 181 GFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 218
>ref|NP_031590.1| zinc finger protein 36, C3H1 type-like 1 [Mus musculus].
Length = 338
Score = 175 bits (444), Expect = 4e-44
Identities = 103/222 (46%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Frame = +2
Query: 302 MSTTLLSA-FYDI-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFTPGFLR 463
M+TTL+SA +D+ + LCK K L N + + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYSTPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 464 RHSASNLHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLN 643
RHS + + H L G +L +
Sbjct: 52 RHSVTLPSSKFHQ------------------------------NQLLSSLKGEPAPSLSS 81
Query: 644 KENKFRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKC 823
++++FRDRSFSE G+R +NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGERLLPTQKQPGSGQ------VNSSRYKTELCRPFEENGACKYGDKC 135
Query: 824 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>ref|NP_001009549.1| zinc finger protein 36-like 3 [Mus musculus].
Length = 725
Score = 142 bits (357), Expect = 5e-34
Identities = 83/201 (41%), Positives = 100/201 (49%), Gaps = 6/201 (2%)
Frame = +2
Query: 365 LANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASNLHALAHPAPSPGS------CS 526
+AN NLN L+ T VA + +S TPG S+S+ L H APS + CS
Sbjct: 1 MANNNLNRPLN-----TNVADSSNSSSTPGTAPPPSSSDPQVLGHQAPSSSASSLTEDCS 55
Query: 527 PKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENKFRDRSFSENGDRXXXXX 706
F EPS + ++ N + S +
Sbjct: 56 SSFARDLNSYNNGQSGATGAVSWEAPHEPSEANAVSQIHPRNG--EHSLQQK-------- 105
Query: 707 XXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTE 886
S RYKTELCRPFEESG CKYG KCQFAHG+ ELR+L+RHPKYKTE
Sbjct: 106 -PKPQKVSGSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELRTLSRHPKYKTE 164
Query: 887 LCRTFHTIGFCPYGPRCHFIH 949
CRTFH++GFCPYG RCHFIH
Sbjct: 165 PCRTFHSVGFCPYGTRCHFIH 185
>ref|NP_035886.1| tristetraprolin [Mus musculus].
Length = 319
Score = 111 bits (277), Expect = 9e-25
Identities = 47/66 (71%), Positives = 51/66 (77%)
Frame = +2
Query: 752 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 931
S+RYKTELCR + ESG C+YG KCQFAHG ELR RHPKYKTELC F+ G CPYG
Sbjct: 93 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGS 152
Query: 932 RCHFIH 949
RCHFIH
Sbjct: 153 RCHFIH 158
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,328,670
Number of extensions: 619741
Number of successful extensions: 3504
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3465
Number of HSP's successfully gapped: 5
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013527
(950 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008818.3| zinc finger protein 36, C3H1 type-like 2 [Homo ... 363 e-100
Alignment gi|NP_004917.2| zinc finger protein 36, C3H1 type-like 1 [Homo ... 176 2e-44
Alignment gi|NP_003398.1| tristetraprolin [Homo sapiens]. 110 1e-24
>ref|NP_008818.3| zinc finger protein 36, C3H1 type-like 2 [Homo sapiens].
Length = 494
Score = 363 bits (931), Expect = e-100
Identities = 176/216 (81%), Positives = 177/216 (81%)
Frame = +2
Query: 302 MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFTPGFLRRHSASN 481
MSTTLLSAFYD+DFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGF PGFLRRHSASN
Sbjct: 1 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN 60
Query: 482 LHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLNKENKFR 661
LHALAHPAPSPGSCSPKFP TLKEPSGGGGTALLNKENKFR
Sbjct: 61 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR 120
Query: 662 DRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 841
DRSFSENGDR INSTRYKTELCRPFEESGTCKYGEKCQFAHGF
Sbjct: 121 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 180
Query: 842 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 181 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 216
>ref|NP_004917.2| zinc finger protein 36, C3H1 type-like 1 [Homo sapiens].
Length = 338
Score = 176 bits (447), Expect = 2e-44
Identities = 104/222 (46%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Frame = +2
Query: 302 MSTTLLSA-FYDI-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFTPGFLR 463
M+TTL+SA +D+ + LCK K L N + + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYSAPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 464 RHSASNLHALAHPAPSPGSCSPKFPXXXXXXXXXXXXXXXXXXXXTLKEPSGGGGTALLN 643
RHS + + H L G AL +
Sbjct: 52 RHSVTLPSSKFHQ------------------------------NQLLSSLKGEPAPALSS 81
Query: 644 KENKFRDRSFSENGDRXXXXXXXXXXXXXXXXXXINSTRYKTELCRPFEESGTCKYGEKC 823
++++FRDRSFSE G+R +NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGERLLPTQKQPGGGQ------VNSSRYKTELCRPFEENGACKYGDKC 135
Query: 824 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 949
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
>ref|NP_003398.1| tristetraprolin [Homo sapiens].
Length = 326
Score = 110 bits (276), Expect = 1e-24
Identities = 47/65 (72%), Positives = 50/65 (76%)
Frame = +2
Query: 755 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPR 934
+RYKTELCR F ESG C+YG KCQFAHG ELR RHPKYKTELC F+ G CPYG R
Sbjct: 102 SRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSR 161
Query: 935 CHFIH 949
CHFIH
Sbjct: 162 CHFIH 166
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,157,053
Number of extensions: 746556
Number of successful extensions: 4184
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4143
Number of HSP's successfully gapped: 4
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013527
(950 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1166 0.0
gb|GL895031.2| Sus scrofa unplaced genomic scaffold ChrUScaf2915 345 3e-92
Sscrofa_Chr07 224 7e-56
>Sscrofa_Chr03
|| Length = 144787322
Score = 1166 bits (588), Expect = 0.0
Identities = 597/600 (99%)
Strand = Plus / Plus
Query: 351 agacggagaaatccctggccaacctcaatctgaacaacatgctggacaagaaggcggtgg 410
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103259949 agacagagaaatccctggccaacctcaatctgaacaacatgctggacaagaaggcggtgg 103260008
Query: 411 ggacgcctgtggccgctgcccccagctcgggcttcaccccgggcttcctccgacggcact 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103260009 ggacgcctgtggccgctgcccccagctcgggcttcaccccgggcttcctccgacggcact 103260068
Query: 471 cggccagcaacctgcacgcgctcgcccacccagcgcctagccccggcagctgctcgccca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103260069 cggccagcaacctgcacgcgctcgcccacccagcgcctagccccggcagctgctcgccca 103260128
Query: 531 agttcccgggcgcggctaacggcagcagctgcggcagcgcggcggccagcggcccggcct 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103260129 agttcccgggcgcggctaacggcagcagctgcggcagcgcggcggccagcggcccggcct 103260188
Query: 591 cctacggcaccctcaaggagccgtcggggggcggcggcacggccctgctgaacaaggaga 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103260189 cctacggcaccctcaaggagccgtcggggggcggcggcacggccctgctgaacaaggaga 103260248
Query: 651 acaaattccgggaccgctcgttcagtgagaacggcgatcgcagccagcacctcctgcacc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103260249 acaaattccgggaccgctcgttcagtgagaacggcgatcgcagccagcacctcctgcacc 103260308
Query: 711 tgcagcagcagcagaaggggggcggcggctcccagatcaactcaacgcgctacaaaactg 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103260309 tgcagcagcagcagaaggggggcggcggctcccagatcaactcaacgcgctacaaaactg 103260368
Query: 771 agctgtgccgacccttcgaggagagcggcacgtgcaaatacggcgagaagtgccagttcg 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103260369 agctgtgccgacccttcgaggagagcggcacgtgcaaatacggcgagaagtgccagttcg 103260428
Query: 831 cgcacgggttccacgagctgcgcagcctgactcgccatccgaagtacaagacggagctgt 890
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 103260429 cgcacgggttccacgagctgcgcagcctgactcgccacccgaagtacaagacggagctgt 103260488
Query: 891 gccgcaccttccacaccatcggcttctgcccgtatgggccgcgctgccacttcatccaca 950
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 103260489 gccgcaccttccacaccatcggcttctgcccgtacgggccgcgctgccacttcatccaca 103260548
Score = 543 bits (274), Expect = e-152
Identities = 280/282 (99%)
Strand = Plus / Plus
Query: 71 aggagcgctctagcttcactctttctttccccccactccgcactcctgggcaccctcaaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103259133 aggagcgctctagcttcactctttctttccccccactccgcactcctgggcaccctcaaa 103259192
Query: 131 accagtccacgctgctgcctccgttccttcttttctcgccccccagcaaactttcgatcc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103259193 accagtccacgctgctgcctccgttccttcttttctcgccccccagcaaactttcgatcc 103259252
Query: 191 ctcccccgcccctcgcccgttattcgtcgtggctcgagcccggccgcgccgccgcgaggg 250
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 103259253 ctcccccgcccctcgcccgttattcgtcgtggctcgagtccggccgcgccgccgcgaggg 103259312
Query: 251 ttcctccggacctccctgcctgcagctccgaccattacaggatccagaaacatgtcgacc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103259313 ttcctccggacctccctgcctgcagctccgaccattacaggatccagaaacatgtcgacc 103259372
Query: 311 acacttctgtccgccttctacgatatcgacttcttgtgcaag 352
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 103259373 acacttctgtccgccttctatgatatcgacttcttgtgcaag 103259414
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 gttccagcagtccgagagctgccgtcggct 33
||||||||||||||||||||||||||||||
Sbjct: 103259066 gttccagcagtccgagagctgccgtcggct 103259095
>gb|GL895031.2| Sus scrofa unplaced genomic scaffold ChrUScaf2915
Length = 39987
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 498 acccagcgcctagccccggcagctgctcgcccaagttcccgggcgcggctaacggcagca 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6201 acccagcgcctagccccggcagctgctcgcccaagttcccgggcgcggctaacggcagca 6142
Query: 558 gctgcggcagcgcggcggccagcggcccggcctcctacggcaccctcaaggagccgtcgg 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6141 gctgcggcagcgcggcggccagcggcccggcctcctacggcaccctcaaggagccgtcgg 6082
Query: 618 ggggcggcggcacggccctgctgaacaaggagaacaaattccgggaccgctcgt 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6081 ggggcggcggcacggccctgctgaacaaggagaacaaattccgggaccgctcgt 6028
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 691 cagccagcacctcctgcacctgcagcagcagcagaaggggggcggcggctcccagatcaa 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 cagccagcacctcctgcacctgcagcagcagcagaaggggggcggcggctcccagatcaa 5868
Query: 751 ctcaacgcgctacaaaactgagctgtgccgacccttcgaggagagcggcacgtgcaaata 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 ctcaacgcgctacaaaactgagctgtgccgacccttcgaggagagcggcacgtgcaaata 5808
Query: 811 cggcgagaagtgcc 824
||||||||||||||
Sbjct: 5807 cggcgagaagtgcc 5794
Score = 258 bits (130), Expect = 5e-66
Identities = 133/134 (99%)
Strand = Plus / Minus
Query: 351 agacggagaaatccctggccaacctcaatctgaacaacatgctggacaagaaggcggtgg 410
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6435 agacagagaaatccctggccaacctcaatctgaacaacatgctggacaagaaggcggtgg 6376
Query: 411 ggacgcctgtggccgctgcccccagctcgggcttcaccccgggcttcctccgacggcact 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6375 ggacgcctgtggccgctgcccccagctcgggcttcaccccgggcttcctccgacggcact 6316
Query: 471 cggccagcaacctg 484
||||||||||||||
Sbjct: 6315 cggccagcaacctg 6302
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 80 ctagcttcactctttctttccccccactccgcactcctgggcaccctcaaaaccagtcca 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7401 ctagcttcactctttctttccccccactccgcactcctgggcaccctcaaaaccagtcca 7342
Query: 140 cgctgctgcctccgttccttcttttctcgccccccagcaaactttcga 187
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7341 cgctgctgcctccgttccttcttttctcgccccccagcaaactttcga 7294
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 227 agcccggccgcgccgccgcgagggttcctccggacctccctgcctgcagctccgaccatt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7193 agcccggccgcgccgccgcgagggttcctccggacctccctgcctgcagctccgaccatt 7134
Query: 287 acaggatccagaaacatgtcgaccacacttctgtccgccttcta 330
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7133 acaggatccagaaacatgtcgaccacacttctgtccgccttcta 7090
>Sscrofa_Chr07
|| Length = 134764511
Score = 224 bits (113), Expect = 7e-56
Identities = 173/193 (89%)
Strand = Plus / Minus
Query: 758 cgctacaaaactgagctgtgccgacccttcgaggagagcggcacgtgcaaatacggcgag 817
|||||||| || ||||||||||| ||||||||||||| |||| | || || ||||| ||
Sbjct: 98805920 cgctacaagaccgagctgtgccgccccttcgaggagaacggcgcctgtaagtacggggac 98805861
Query: 818 aagtgccagttcgcgcacgggttccacgagctgcgcagcctgactcgccatccgaagtac 877
||||||||||||||||| || |||||||||| || |||||||| ||||| || ||||||
Sbjct: 98805860 aagtgccagttcgcgcatggcatccacgagctccgaagcctgacccgccaccccaagtac 98805801
Query: 878 aagacggagctgtgccgcaccttccacaccatcggcttctgcccgtatgggccgcgctgc 937
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 98805800 aagacggagctgtgccgcaccttccacaccatcggcttctgcccatatgggccccgctgc 98805741
Query: 938 cacttcatccaca 950
|||||||||||||
Sbjct: 98805740 cacttcatccaca 98805728
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,394,252
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 9
Length of query: 950
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 929
Effective length of database: 2,808,413,156
Effective search space: 2609015821924
Effective search space used: 2609015821924
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)