Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013529
(958 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179267.1| rho-related GTP-binding protein RhoD [Bos ta... 355 4e-98
Alignment gi|XP_002699408.1| PREDICTED: ras homolog D-like [Bos taurus]. 355 4e-98
Alignment gi|NP_001035692.1| rho-related GTP-binding protein RhoF precurs... 199 3e-51
Alignment gi|NP_776588.1| ras-related C3 botulinum toxin substrate 1 prec... 189 3e-48
Alignment gi|NP_001092649.1| ras-related C3 botulinum toxin substrate 3 [... 187 9e-48
Alignment gi|NP_788818.1| transforming protein RhoA precursor [Bos taurus]. 183 2e-46
Alignment gi|NP_001039603.1| rho-related GTP-binding protein RhoC precurs... 182 4e-46
Alignment gi|NP_786986.1| ras-related C3 botulinum toxin substrate 2 prec... 179 3e-45
Alignment gi|NP_001071390.1| rho-related GTP-binding protein RhoB precurs... 174 1e-43
Alignment gi|XP_002700065.1| PREDICTED: ras homolog gene family, member G... 172 4e-43
>ref|NP_001179267.1| rho-related GTP-binding protein RhoD [Bos taurus].
Length = 210
Score = 355 bits (910), Expect = 4e-98
Identities = 178/210 (84%), Positives = 182/210 (86%), Gaps = 7/210 (3%)
Frame = +1
Query: 64 MKAARAEREE-------VKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQM 222
MKAA+A EE VKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQ+
Sbjct: 1 MKAAQAPSEEAPGGARSVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQV 60
Query: 223 KGGPVRLQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCK 402
KG P+ LQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCK
Sbjct: 61 KGKPIHLQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCK 120
Query: 403 EVPIIVVGCKTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALLXXXXX 582
EVPIIVVGCKTDLRKDK LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALL
Sbjct: 121 EVPIIVVGCKTDLRKDKMLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALLQENVH 180
Query: 583 XXXXXXXXXXLSSRSRNFWRRITRSFCVLT 672
LSSR RNFWRRITRSFCV+T
Sbjct: 181 AVFQEAAEVALSSRGRNFWRRITRSFCVVT 210
>ref|XP_002699408.1| PREDICTED: ras homolog D-like [Bos taurus].
Length = 210
Score = 355 bits (910), Expect = 4e-98
Identities = 178/210 (84%), Positives = 182/210 (86%), Gaps = 7/210 (3%)
Frame = +1
Query: 64 MKAARAEREE-------VKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQM 222
MKAA+A EE VKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQ+
Sbjct: 1 MKAAQAPSEEAPGGARSVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQV 60
Query: 223 KGGPVRLQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCK 402
KG P+ LQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCK
Sbjct: 61 KGKPIHLQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCK 120
Query: 403 EVPIIVVGCKTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALLXXXXX 582
EVPIIVVGCKTDLRKDK LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALL
Sbjct: 121 EVPIIVVGCKTDLRKDKMLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALLQENVH 180
Query: 583 XXXXXXXXXXLSSRSRNFWRRITRSFCVLT 672
LSSR RNFWRRITRSFCV+T
Sbjct: 181 AVFQEAAEVALSSRGRNFWRRITRSFCVVT 210
>ref|NP_001035692.1| rho-related GTP-binding protein RhoF precursor [Bos taurus].
Length = 215
Score = 199 bits (506), Expect = 3e-51
Identities = 86/159 (54%), Positives = 122/159 (76%)
Frame = +1
Query: 85 REEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAG 264
R+E+K+V+VGDGGCGKTSLLMV+++G+FPE Y P+VFE+ ++ + V L ++DTAG
Sbjct: 21 RKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAG 80
Query: 265 QVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLR 444
Q DYDRLRPL Y + ++L+C+DV +P S+DN+ +W+PEV HFC+ +P++++GCKTDLR
Sbjct: 81 QEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLR 140
Query: 445 KDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
KDK ++KLR LEP+TY +GQ + A YLECSA
Sbjct: 141 KDKEQLRKLRAAQLEPITYTQGQSACEQIRAALYLECSA 179
>ref|NP_776588.1| ras-related C3 botulinum toxin substrate 1 precursor [Bos taurus].
Length = 192
Score = 189 bits (480), Expect = 3e-48
Identities = 86/159 (54%), Positives = 109/159 (68%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G MA+ +GAV YLECSAL
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 160
>ref|NP_001092649.1| ras-related C3 botulinum toxin substrate 3 [Bos taurus].
Length = 192
Score = 187 bits (476), Expect = 9e-48
Identities = 85/159 (53%), Positives = 108/159 (67%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PI++VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK +++LR L P+TY +G MAR +G+V YLECSAL
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL 160
>ref|NP_788818.1| transforming protein RhoA precursor [Bos taurus].
Length = 193
Score = 183 bits (465), Expect = 2e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA +GA Y+ECSA
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 161
>ref|NP_001039603.1| rho-related GTP-binding protein RhoC precursor [Bos taurus].
Length = 193
Score = 182 bits (462), Expect = 4e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA + A YLECSA
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
>ref|NP_786986.1| ras-related C3 botulinum toxin substrate 2 precursor [Bos taurus].
Length = 192
Score = 179 bits (454), Expect = 3e-45
Identities = 80/159 (50%), Positives = 107/159 (67%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP S++N+ +W+PEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G +A+ + +V YLECSAL
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL 160
>ref|NP_001071390.1| rho-related GTP-binding protein RhoB precursor [Bos taurus].
Length = 196
Score = 174 bits (440), Expect = 1e-43
Identities = 84/155 (54%), Positives = 105/155 (67%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF V SP S +NI +W PEV HFC VPII+V K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
+ +L + EPV G+ MA + A YLECSA
Sbjct: 127 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 161
>ref|XP_002700065.1| PREDICTED: ras homolog gene family, member G-like [Bos taurus].
Length = 191
Score = 172 bits (436), Expect = 4e-43
Identities = 77/160 (48%), Positives = 107/160 (66%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFPE Y PTVF+ + G V L +WDTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVILNLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
+YDRLR L YP ++ ++CF + +P S+ N+ ++WYPEV+H C VP+++VG K DLR
Sbjct: 62 EEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRS 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALL 567
D VKKL++ L P + +G +A+ VGAV YLECSAL+
Sbjct: 122 DLETVKKLKEQSLVPTSPQQGTSLAKQVGAVKYLECSALM 161
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,720,167
Number of extensions: 1285041
Number of successful extensions: 9571
Number of sequences better than 1.0e-05: 144
Number of HSP's gapped: 8810
Number of HSP's successfully gapped: 145
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013529
(958 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854676.1| PREDICTED: similar to Rho-related GTP-binding p... 280 2e-75
Alignment gi|XP_853451.1| PREDICTED: similar to Rho-related GTP-binding p... 197 1e-50
Alignment gi|NP_001003274.1| ras-related C3 botulinum toxin substrate 1 p... 189 3e-48
Alignment gi|XP_855587.1| PREDICTED: rac2 GTP-binding protein [Canis fami... 186 3e-47
Alignment gi|NP_001003273.2| transforming protein RhoA precursor [Canis l... 183 2e-46
Alignment gi|XP_540336.2| PREDICTED: similar to Rho-related GTP-binding p... 182 4e-46
Alignment gi|XP_540101.2| PREDICTED: similar to rhoB gene [Canis familiar... 174 1e-43
Alignment gi|XP_549069.2| PREDICTED: similar to Rho-related GTP-binding p... 173 2e-43
Alignment gi|XP_542335.2| PREDICTED: similar to Rho-related GTP-binding p... 170 2e-42
Alignment gi|NP_001003254.1| cell division control protein 42 homolog pre... 167 1e-41
>ref|XP_854676.1| PREDICTED: similar to Rho-related GTP-binding protein RhoD
(Rho-related protein HP1) (RhoHP1) [Canis familiaris].
Length = 190
Score = 280 bits (715), Expect = 2e-75
Identities = 136/165 (82%), Positives = 144/165 (87%)
Frame = +1
Query: 175 SYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSF 354
SYTPTVFERL VNL+MKG P+ LQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSP SF
Sbjct: 25 SYTPTVFERLTVNLEMKGKPLNLQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPPSF 84
Query: 355 DNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVG 534
DNI NRWYPEVNHFCKEVPIIVVGCKTDLRKDKSL+KKLRKN LEPVTYHRGQEMAR+VG
Sbjct: 85 DNIFNRWYPEVNHFCKEVPIIVVGCKTDLRKDKSLLKKLRKNRLEPVTYHRGQEMARSVG 144
Query: 535 AVAYLECSALLXXXXXXXXXXXXXXXLSSRSRNFWRRITRSFCVL 669
AVAYLECSALL LSSRSRNFWRR+T++FCV+
Sbjct: 145 AVAYLECSALLQENVHAVFQEAAKVALSSRSRNFWRRLTQTFCVV 189
>ref|XP_853451.1| PREDICTED: similar to Rho-related GTP-binding protein RhoF
(Rho-family GTPase Rif) (Rho in filopodia) [Canis
familiaris].
Length = 207
Score = 197 bits (501), Expect = 1e-50
Identities = 86/159 (54%), Positives = 121/159 (76%)
Frame = +1
Query: 85 REEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAG 264
R+E+K+V+VGDGGCGKTSLLMV+++G+FPE Y P+VFE+ ++ + V L ++DTAG
Sbjct: 13 RKELKIVIVGDGGCGKTSLLMVYSQGSFPEDYAPSVFEKYTASVTVGSKEVTLNLYDTAG 72
Query: 265 QVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLR 444
Q DYDRLRPL Y + ++L+C+DV +P S+DN+ +W+PEV HFC+ P++++GCKTDLR
Sbjct: 73 QEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGTPMVLIGCKTDLR 132
Query: 445 KDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
KDK ++KLR LEP+TY +GQ + A YLECSA
Sbjct: 133 KDKEQLRKLRAAQLEPITYMQGQIACEQIRAALYLECSA 171
>ref|NP_001003274.1| ras-related C3 botulinum toxin substrate 1 precursor [Canis lupus
familiaris].
Length = 192
Score = 189 bits (480), Expect = 3e-48
Identities = 86/159 (54%), Positives = 109/159 (68%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G MA+ +GAV YLECSAL
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 160
>ref|XP_855587.1| PREDICTED: rac2 GTP-binding protein [Canis familiaris].
Length = 192
Score = 186 bits (472), Expect = 3e-47
Identities = 85/159 (53%), Positives = 108/159 (67%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+V DG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVEDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G MA+ +GAV YLECSAL
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 160
>ref|NP_001003273.2| transforming protein RhoA precursor [Canis lupus familiaris].
Length = 193
Score = 183 bits (465), Expect = 2e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA +GA Y+ECSA
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 161
>ref|XP_540336.2| PREDICTED: similar to Rho-related GTP-binding protein RhoC
(Silica-induced gene 61 protein) (SIG-61) [Canis
familiaris].
Length = 193
Score = 182 bits (462), Expect = 4e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA + A YLECSA
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
>ref|XP_540101.2| PREDICTED: similar to rhoB gene [Canis familiaris].
Length = 444
Score = 174 bits (441), Expect = 1e-43
Identities = 84/155 (54%), Positives = 105/155 (67%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 255 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 314
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF V SP S +NI +W PEV HFC VPII+V K DLR D+
Sbjct: 315 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 374
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
+ +L + EPV G+ MA + A YLECSA
Sbjct: 375 VRTELARMKQEPVRTDDGRAMAVRIQAYEYLECSA 409
>ref|XP_549069.2| PREDICTED: similar to Rho-related GTP-binding protein RhoG (Sid
10750) [Canis familiaris].
Length = 191
Score = 173 bits (439), Expect = 2e-43
Identities = 78/160 (48%), Positives = 107/160 (66%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFPE Y PTVF+ + G V L +WDTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
+YDRLR L YP ++ ++CF + +P S+ N+ ++W+PEV+H C VP+++VG K DLR
Sbjct: 62 EEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWHPEVSHHCPNVPVLLVGTKRDLRN 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALL 567
D VKKL++ L P T +G +A+ VGAV YLECSALL
Sbjct: 122 DVETVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSALL 161
>ref|XP_542335.2| PREDICTED: similar to Rho-related GTP-binding protein RhoG (Sid
10750) [Canis familiaris].
Length = 255
Score = 170 bits (431), Expect = 2e-42
Identities = 76/165 (46%), Positives = 109/165 (66%)
Frame = +1
Query: 70 AARAEREEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQI 249
AA + +K V+VGDG GKT LL+ + AFP+ Y PTVF+ + G V L +
Sbjct: 60 AAAPTMQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNL 119
Query: 250 WDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGC 429
WDTAGQ +YDRLR L YP +V ++CF + SP S++N+ ++W+PEV H C +VPI++VG
Sbjct: 120 WDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGT 179
Query: 430 KTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
K DLR +++L++ G P+T +GQ +A+ + AV YLECSAL
Sbjct: 180 KKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSAL 224
>ref|NP_001003254.1| cell division control protein 42 homolog precursor [Canis lupus
familiaris].
Length = 191
Score = 167 bits (424), Expect = 1e-41
Identities = 76/159 (47%), Positives = 104/159 (65%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + FP Y PTVF+ V + + G P L ++DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF V SP SF+N+ +W PE+ H C + P ++VG + DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
D S ++KL KN +P+T +++AR + AV Y+ECSAL
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,491,736
Number of extensions: 1328154
Number of successful extensions: 9403
Number of sequences better than 1.0e-05: 142
Number of HSP's gapped: 8760
Number of HSP's successfully gapped: 142
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013529
(958 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353795.1| PREDICTED: rho-related GTP-binding protein R... 212 2e-55
Alignment gi|NP_001116662.1| rho-related GTP-binding protein RhoF [Sus sc... 197 9e-51
Alignment gi|NP_001230514.1| ras-related C3 botulinum toxin substrate 1 (... 189 2e-48
Alignment gi|XP_003358480.1| PREDICTED: transforming protein RhoA [Sus sc... 183 1e-46
Alignment gi|XP_003125894.1| PREDICTED: rho-related GTP-binding protein R... 182 2e-46
Alignment gi|XP_003355390.1| PREDICTED: ras-related C3 botulinum toxin su... 179 2e-45
Alignment gi|XP_003362241.1| PREDICTED: rho-related GTP-binding protein R... 174 5e-44
Alignment gi|XP_003135221.2| PREDICTED: rho-related GTP-binding protein R... 174 5e-44
Alignment gi|NP_001116661.1| rho-related GTP-binding protein RhoB [Sus sc... 174 8e-44
Alignment gi|XP_003353796.1| PREDICTED: rho-related GTP-binding protein R... 172 2e-43
>ref|XP_003353795.1| PREDICTED: rho-related GTP-binding protein RhoD-like [Sus scrofa].
Length = 179
Score = 212 bits (540), Expect = 2e-55
Identities = 104/106 (98%), Positives = 104/106 (98%)
Frame = +1
Query: 64 MKAARAEREEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRL 243
MKAARAEREEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRL
Sbjct: 1 MKAARAEREEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRL 60
Query: 244 QIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYP 381
QIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNR P
Sbjct: 61 QIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRPQP 106
>ref|NP_001116662.1| rho-related GTP-binding protein RhoF [Sus scrofa].
Length = 211
Score = 197 bits (500), Expect = 9e-51
Identities = 86/159 (54%), Positives = 119/159 (74%)
Frame = +1
Query: 85 REEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAG 264
R+E+K+V+VGDGGCGKTSLLMV+++G+FPE Y P+VFE+ + + V L ++DTAG
Sbjct: 17 RKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTARVTVGSKEVTLNLYDTAG 76
Query: 265 QVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLR 444
Q DYDRLRPL Y + ++L+C+DV +P S+DN+ +W+PEV HFC+ P +++GCKTDLR
Sbjct: 77 QEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGTPTVLIGCKTDLR 136
Query: 445 KDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
KDK ++KLR LEP+TY +GQ + A YLECSA
Sbjct: 137 KDKEQLRKLRAAQLEPITYMQGQSACEQIRAALYLECSA 175
>ref|NP_001230514.1| ras-related C3 botulinum toxin substrate 1 (rho family, small GTP
binding protein Rac1) [Sus scrofa].
Length = 192
Score = 189 bits (480), Expect = 2e-48
Identities = 86/159 (54%), Positives = 109/159 (68%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G MA+ +GAV YLECSAL
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 160
>ref|XP_003358480.1| PREDICTED: transforming protein RhoA [Sus scrofa].
Length = 193
Score = 183 bits (465), Expect = 1e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA +GA Y+ECSA
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 161
>ref|XP_003125894.1| PREDICTED: rho-related GTP-binding protein RhoC-like [Sus scrofa].
Length = 193
Score = 182 bits (462), Expect = 2e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA + A YLECSA
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
>ref|XP_003355390.1| PREDICTED: ras-related C3 botulinum toxin substrate 2-like [Sus
scrofa].
Length = 192
Score = 179 bits (454), Expect = 2e-45
Identities = 80/159 (50%), Positives = 107/159 (67%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP S++N+ +W+PEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G +A+ + +V YLECSAL
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL 160
>ref|XP_003362241.1| PREDICTED: rho-related GTP-binding protein RhoG-like [Sus scrofa].
Length = 191
Score = 174 bits (442), Expect = 5e-44
Identities = 78/160 (48%), Positives = 107/160 (66%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFPE Y PTVF+ + G V L +WDTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
+YDRLR L YP ++ ++CF + +P S+ N+ ++WYPEV+H C VP+++VG K DLR
Sbjct: 62 EEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRS 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALL 567
D VKKL++ L P T +G +A+ VGAV YLECSAL+
Sbjct: 122 DLETVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSALM 161
>ref|XP_003135221.2| PREDICTED: rho-related GTP-binding protein RhoG-like [Sus scrofa].
Length = 191
Score = 174 bits (442), Expect = 5e-44
Identities = 78/160 (48%), Positives = 107/160 (66%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFPE Y PTVF+ + G V L +WDTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
+YDRLR L YP ++ ++CF + +P S+ N+ ++WYPEV+H C VP+++VG K DLR
Sbjct: 62 EEYDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRS 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALL 567
D VKKL++ L P T +G +A+ VGAV YLECSAL+
Sbjct: 122 DLETVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSALM 161
>ref|NP_001116661.1| rho-related GTP-binding protein RhoB [Sus scrofa].
Length = 196
Score = 174 bits (440), Expect = 8e-44
Identities = 84/155 (54%), Positives = 105/155 (67%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF V SP S +NI +W PEV HFC VPII+V K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
+ +L + EPV G+ MA + A YLECSA
Sbjct: 127 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 161
>ref|XP_003353796.1| PREDICTED: rho-related GTP-binding protein RhoD-like [Sus scrofa].
Length = 103
Score = 172 bits (436), Expect = 2e-43
Identities = 85/100 (85%), Positives = 85/100 (85%)
Frame = +1
Query: 373 WYPEVNHFCKEVPIIVVGCKTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLE 552
WYPEVNHFCKEVPIIVVGCKTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLE
Sbjct: 4 WYPEVNHFCKEVPIIVVGCKTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLE 63
Query: 553 CSALLXXXXXXXXXXXXXXXLSSRSRNFWRRITRSFCVLT 672
CSALL LSSRSRNFWRRITRSFCVLT
Sbjct: 64 CSALLQENVQAVFQEAAEVALSSRSRNFWRRITRSFCVLT 103
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,448,789
Number of extensions: 835347
Number of successful extensions: 6127
Number of sequences better than 1.0e-05: 111
Number of HSP's gapped: 5691
Number of HSP's successfully gapped: 111
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013529
(958 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031511.1| rho-related GTP-binding protein RhoD precursor ... 298 4e-81
Alignment gi|NP_780301.1| rho-related GTP-binding protein RhoF precursor ... 194 1e-49
Alignment gi|NP_033033.1| ras-related C3 botulinum toxin substrate 1 prec... 189 3e-48
Alignment gi|NP_573486.1| ras-related C3 botulinum toxin substrate 3 prec... 187 8e-48
Alignment gi|NP_001155245.1| ras homolog gene family, member A [Mus muscu... 184 1e-46
Alignment gi|NP_058082.2| transforming protein RhoA precursor [Mus muscul... 183 2e-46
Alignment gi|NP_031510.2| rho-related GTP-binding protein RhoC precursor ... 182 3e-46
Alignment gi|XP_485435.1| PREDICTED: transforming protein RhoA [Mus muscu... 179 2e-45
Alignment gi|XP_003086428.1| PREDICTED: transforming protein RhoA [Mus mu... 179 2e-45
Alignment gi|NP_033034.1| ras-related C3 botulinum toxin substrate 2 prec... 179 4e-45
>ref|NP_031511.1| rho-related GTP-binding protein RhoD precursor [Mus musculus].
Length = 210
Score = 298 bits (763), Expect = 4e-81
Identities = 145/193 (75%), Positives = 157/193 (81%)
Frame = +1
Query: 94 VKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVD 273
VKVVLVGDGGCGKTSL+MVFA+GAFPESY+PTVFER LQMKG PV LQIWDTAGQ D
Sbjct: 18 VKVVLVGDGGCGKTSLMMVFAKGAFPESYSPTVFERYNATLQMKGKPVHLQIWDTAGQDD 77
Query: 274 YDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDK 453
YDRLRPLFYPDA+VLLLCFDVT+P+SFDN+SNRWYPEV HFCK VPIIVVGCK DLRKDK
Sbjct: 78 YDRLRPLFYPDANVLLLCFDVTNPNSFDNVSNRWYPEVTHFCKGVPIIVVGCKIDLRKDK 137
Query: 454 SLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALLXXXXXXXXXXXXXXXLSSRSRN 633
LV LRK LEPVTYHRG +MAR+VGAVAYLECSA L LSSR N
Sbjct: 138 VLVNNLRKKRLEPVTYHRGHDMARSVGAVAYLECSARLHDNVEAVFQEAAEVALSSRRHN 197
Query: 634 FWRRITRSFCVLT 672
FWRRIT++ C+ T
Sbjct: 198 FWRRITQNCCLAT 210
>ref|NP_780301.1| rho-related GTP-binding protein RhoF precursor [Mus musculus].
Length = 211
Score = 194 bits (492), Expect = 1e-49
Identities = 85/164 (51%), Positives = 120/164 (73%)
Frame = +1
Query: 70 AARAEREEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQI 249
A + R+E+K+V+VGDGGCGKTSLLMV+ +G+FPE Y P+VFE+ ++ + V L +
Sbjct: 12 APSSARKELKIVIVGDGGCGKTSLLMVYCQGSFPEHYAPSVFEKYTASVTVGNKEVTLNL 71
Query: 250 WDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGC 429
+DTAGQ DYDRLRPL Y + ++L+C+DV +P S+DN+ +W+PEV HFC+ +P +++GC
Sbjct: 72 YDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPTVLIGC 131
Query: 430 KTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
KTDLRKDK ++KLR LEP+TY +G + YLECSA
Sbjct: 132 KTDLRKDKEQLRKLRAAQLEPITYTQGLNACEQMRGALYLECSA 175
>ref|NP_033033.1| ras-related C3 botulinum toxin substrate 1 precursor [Mus
musculus].
Length = 192
Score = 189 bits (480), Expect = 3e-48
Identities = 86/159 (54%), Positives = 109/159 (68%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G MA+ +GAV YLECSAL
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 160
>ref|NP_573486.1| ras-related C3 botulinum toxin substrate 3 precursor [Mus
musculus].
Length = 192
Score = 187 bits (476), Expect = 8e-48
Identities = 85/159 (53%), Positives = 108/159 (67%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PI++VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK +++LR L P+TY +G MAR +G+V YLECSAL
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL 160
>ref|NP_001155245.1| ras homolog gene family, member A [Mus musculus].
Length = 193
Score = 184 bits (466), Expect = 1e-46
Identities = 86/155 (55%), Positives = 109/155 (70%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD VLLLCF + +P SF NI ++W PEV HFC VPII+VG K DLR D
Sbjct: 67 DRLRPLSYPDTDVLLLCFSIGNPDSFGNIPHKWIPEVKHFCPNVPIILVGSKKDLRNDFY 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
+++L K PV +GQ +A ++GA Y+ECSA
Sbjct: 127 TIQELAKRKQAPVRPEQGQGLANSIGAFEYVECSA 161
>ref|NP_058082.2| transforming protein RhoA precursor [Mus musculus].
Length = 193
Score = 183 bits (465), Expect = 2e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA +GA Y+ECSA
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 161
>ref|NP_031510.2| rho-related GTP-binding protein RhoC precursor [Mus musculus].
Length = 193
Score = 182 bits (462), Expect = 3e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA + A YLECSA
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
>ref|XP_485435.1| PREDICTED: transforming protein RhoA [Mus musculus].
Length = 193
Score = 179 bits (455), Expect = 2e-45
Identities = 83/155 (53%), Positives = 107/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKHVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
D LRPL YPD V+L+CF + SP S +NI +W PEV HFC VPI++VG K DLR D+
Sbjct: 67 DGLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIVLVGNKKDLRHDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA +GA Y+ECSA
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 161
>ref|XP_003086428.1| PREDICTED: transforming protein RhoA [Mus musculus].
Length = 193
Score = 179 bits (455), Expect = 2e-45
Identities = 83/155 (53%), Positives = 107/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKHVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
D LRPL YPD V+L+CF + SP S +NI +W PEV HFC VPI++VG K DLR D+
Sbjct: 67 DGLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIVLVGNKKDLRHDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA +GA Y+ECSA
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 161
>ref|NP_033034.1| ras-related C3 botulinum toxin substrate 2 precursor [Mus
musculus].
Length = 192
Score = 179 bits (453), Expect = 4e-45
Identities = 80/159 (50%), Positives = 107/159 (67%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP S++N+ +W+PEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G +A+ + +V YLECSAL
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSAL 160
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,145,615
Number of extensions: 1042248
Number of successful extensions: 7042
Number of sequences better than 1.0e-05: 135
Number of HSP's gapped: 6487
Number of HSP's successfully gapped: 135
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013529
(958 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055393.1| rho-related GTP-binding protein RhoD precursor ... 327 1e-89
Alignment gi|NP_061907.2| rho-related GTP-binding protein RhoF precursor ... 196 2e-50
Alignment gi|NP_008839.2| ras-related C3 botulinum toxin substrate 1 isof... 189 3e-48
Alignment gi|NP_005043.1| ras-related C3 botulinum toxin substrate 3 prec... 187 9e-48
Alignment gi|NP_001655.1| transforming protein RhoA precursor [Homo sapie... 183 2e-46
Alignment gi|NP_001036144.1| rho-related GTP-binding protein RhoC precurs... 182 4e-46
Alignment gi|NP_001036143.1| rho-related GTP-binding protein RhoC precurs... 182 4e-46
Alignment gi|NP_786886.1| rho-related GTP-binding protein RhoC precursor ... 182 4e-46
Alignment gi|NP_061485.1| ras-related C3 botulinum toxin substrate 1 isof... 179 3e-45
Alignment gi|NP_002863.1| ras-related C3 botulinum toxin substrate 2 prec... 179 3e-45
>ref|NP_055393.1| rho-related GTP-binding protein RhoD precursor [Homo sapiens].
Length = 210
Score = 327 bits (838), Expect = 1e-89
Identities = 165/210 (78%), Positives = 174/210 (82%), Gaps = 7/210 (3%)
Frame = +1
Query: 64 MKAARAEREE-------VKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQM 222
M AA+A EE VKVVLVGDGGCGKTSLLMVFA+GAFPESYTPTVFER VNLQ+
Sbjct: 1 MTAAQAAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQV 60
Query: 223 KGGPVRLQIWDTAGQVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCK 402
KG PV L IWDTAGQ DYDRLRPLFYPDASVLLLCFDVTSP+SFDNI NRWYPEVNHFCK
Sbjct: 61 KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK 120
Query: 403 EVPIIVVGCKTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSALLXXXXX 582
+VPIIVVGCKTDLRKDKSLV KLR+NGLEPVTYHRGQEMAR+VGAVAYLECSA L
Sbjct: 121 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 180
Query: 583 XXXXXXXXXXLSSRSRNFWRRITRSFCVLT 672
LSSR RNFWRRIT+ FCV+T
Sbjct: 181 AVFQEAAEVALSSRGRNFWRRITQGFCVVT 210
>ref|NP_061907.2| rho-related GTP-binding protein RhoF precursor [Homo sapiens].
Length = 211
Score = 196 bits (499), Expect = 2e-50
Identities = 85/159 (53%), Positives = 121/159 (76%)
Frame = +1
Query: 85 REEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAG 264
R+E+K+V+VGDGGCGKTSLLMV+++G+FPE Y P+VFE+ ++ + V L ++DTAG
Sbjct: 17 RKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAG 76
Query: 265 QVDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLR 444
Q DYDRLRPL Y + ++L+C+DV +P S+DN+ +W+PEV HFC+ +P++++GCKTDLR
Sbjct: 77 QEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLR 136
Query: 445 KDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
KDK ++KLR LEP+TY +G + A YLECSA
Sbjct: 137 KDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSA 175
>ref|NP_008839.2| ras-related C3 botulinum toxin substrate 1 isoform Rac1 [Homo
sapiens].
Length = 192
Score = 189 bits (480), Expect = 3e-48
Identities = 86/159 (54%), Positives = 109/159 (68%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G MA+ +GAV YLECSAL
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 160
>ref|NP_005043.1| ras-related C3 botulinum toxin substrate 3 precursor [Homo
sapiens].
Length = 192
Score = 187 bits (476), Expect = 9e-48
Identities = 85/159 (53%), Positives = 108/159 (67%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP SF+N+ +WYPEV H C PI++VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK +++LR L P+TY +G MAR +G+V YLECSAL
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL 160
>ref|NP_001655.1| transforming protein RhoA precursor [Homo sapiens].
Length = 193
Score = 183 bits (465), Expect = 2e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA +GA Y+ECSA
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 161
>ref|NP_001036144.1| rho-related GTP-binding protein RhoC precursor [Homo sapiens].
Length = 193
Score = 182 bits (462), Expect = 4e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA + A YLECSA
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
>ref|NP_001036143.1| rho-related GTP-binding protein RhoC precursor [Homo sapiens].
Length = 193
Score = 182 bits (462), Expect = 4e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA + A YLECSA
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
>ref|NP_786886.1| rho-related GTP-binding protein RhoC precursor [Homo sapiens].
Length = 193
Score = 182 bits (462), Expect = 4e-46
Identities = 85/155 (54%), Positives = 108/155 (69%)
Frame = +1
Query: 97 KVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQVDY 276
K+V+VGDG CGKT LL+VF++ FPE Y PTVFE ++++ G V L +WDTAGQ DY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 277 DRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRKDKS 456
DRLRPL YPD V+L+CF + SP S +NI +W PEV HFC VPII+VG K DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 457 LVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSA 561
++L K EPV G++MA + A YLECSA
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
>ref|NP_061485.1| ras-related C3 botulinum toxin substrate 1 isoform Rac1b [Homo
sapiens].
Length = 211
Score = 179 bits (454), Expect = 3e-45
Identities = 87/178 (48%), Positives = 110/178 (61%), Gaps = 19/178 (10%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + G PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPD-------------------ASVLLLCFDVTSPHSFDNISNRWYPEVN 390
DYDRLRPL YP A V L+CF + SP SF+N+ +WYPEV
Sbjct: 62 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 121
Query: 391 HFCKEVPIIVVGCKTDLRKDKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
H C PII+VG K DLR DK ++KL++ L P+TY +G MA+ +GAV YLECSAL
Sbjct: 122 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 179
>ref|NP_002863.1| ras-related C3 botulinum toxin substrate 2 precursor [Homo
sapiens].
Length = 192
Score = 179 bits (454), Expect = 3e-45
Identities = 80/159 (50%), Positives = 107/159 (67%)
Frame = +1
Query: 88 EEVKVVLVGDGGCGKTSLLMVFAEGAFPESYTPTVFERLGVNLQMKGGPVRLQIWDTAGQ 267
+ +K V+VGDG GKT LL+ + AFP Y PTVF+ N+ + PV L +WDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 268 VDYDRLRPLFYPDASVLLLCFDVTSPHSFDNISNRWYPEVNHFCKEVPIIVVGCKTDLRK 447
DYDRLRPL YP V L+CF + SP S++N+ +W+PEV H C PII+VG K DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
Query: 448 DKSLVKKLRKNGLEPVTYHRGQEMARAVGAVAYLECSAL 564
DK ++KL++ L P+TY +G +A+ + +V YLECSAL
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,457,361
Number of extensions: 1282070
Number of successful extensions: 8992
Number of sequences better than 1.0e-05: 176
Number of HSP's gapped: 8317
Number of HSP's successfully gapped: 176
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013529
(958 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 841 0.0
Sscrofa_Chr10 66 4e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 841 bits (424), Expect = 0.0
Identities = 452/456 (99%), Gaps = 4/456 (0%)
Strand = Plus / Plus
Query: 507 gggccaggagatggccagggccgtgggcgcggtggcctacctcgagtgctcggctctgct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4237961 gggccaggagatggccagggccgtgggcgcggtggcctacctcgagtgctcggctctgct 4238020
Query: 567 ccaggaaaacgtccaggccgtcttccaggaggcggctgaggtggcccttagcagccgcag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238021 ccaggaaaacgtccaggccgtcttccaggaggcggctgaggtggcccttagcagccgcag 4238080
Query: 627 tcgcaacttctggaggcggattacccgcagcttttgtgtgctgacctgacggcttcgccc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238081 tcgcaacttctggaggcggattacccgcagcttttgtgtgctgacctgacggcttcgccc 4238140
Query: 687 tgcctccctctcctaccgccccagccgcacaggaaggagctggcactgaccttcccactt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238141 tgcctccctctcctaccgccccagccgcacaggaaggagctggcactgaccttcccactt 4238200
Query: 747 ggctgggctggacccagtccccaggctgggaccaccgaactgtacctcaaacagatgggc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238201 ggctgggctggacccagtccccaggctgggaccaccgaactgtacctcaaacagatgggc 4238260
Query: 807 cccaccaaggctgggcctgggacccccggactggagggaaaaccctctgataccggagaa 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238261 cccaccaaggctgggcctgggacccccggactggagggaaaaccctctgataccggagaa 4238320
Query: 867 agggactcccaggctcacca-ccctgtgggggtggaggggtggcccg-agacccctggaa 924
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 4238321 agggactcccaggctcaccagccctgtgggggtggaggggtggcccgaagacccctggaa 4238380
Query: 925 -cactcccagctccctgccctgga-cacaggccctg 958
||||||||||||||||||||||| |||||||||||
Sbjct: 4238381 ccactcccagctccctgccctggaccacaggccctg 4238416
Score = 341 bits (172), Expect = 4e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 3 acattcctgccccgccggccccagctcgccgctctcggcgccggccctccgctgccccgc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415741 acattcctgccccgccggccccagctcgccgctctcggcgccggccctccgctgccccgc 4415800
Query: 63 gatgaaggcggcccgggccgagcgcgaggaggtcaaggtggtcctggtgggcgacggcgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415801 gatgaaggcggcccgggccgagcgcgaggaggtcaaggtggtcctggtgggcgacggcgg 4415860
Query: 123 ctgcgggaagacgtcgctgctgatggtcttcgccgaaggcgccttccccgag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415861 ctgcgggaagacgtcgctgctgatggtcttcgccgaaggcgccttccccgag 4415912
Score = 272 bits (137), Expect = 3e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 372 gtggtacccagaggtgaatcacttctgcaaggaggtgcccatcatcgtcgtgggctgcaa 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4236139 gtggtacccagaggtgaatcacttctgcaaggaggtgcccatcatcgtcgtgggctgcaa 4236198
Query: 432 gaccgatctgcgcaaggacaagtcactggtgaagaagctgcggaaaaatgggttggaacc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4236199 gaccgatctgcgcaaggacaagtcactggtgaagaagctgcggaaaaatgggttggaacc 4236258
Query: 492 cgtgacctaccacaggg 508
|||||||||||||||||
Sbjct: 4236259 cgtgacctaccacaggg 4236275
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 260 caggacaagtcgactacgaccgcctgcggcctctgttctaccctgacgccagcgtcctgc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4233188 caggacaagtcgactacgaccgcctgcggcctctgttctaccctgacgccagcgtcctgc 4233247
Query: 320 tcctctgcttcgacgtcaccagcccacacagctttgacaacatctctaaccgg 372
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4233248 tcctctgcttcgacgtcaccagcccacacagctttgacaacatctctaaccgg 4233300
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 260 caggacaagtcgactacgaccgcctgcggcctctgttctaccctgacgccagcgtcctgc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4422809 caggacaagtcgactacgaccgcctgcggcctctgttctaccctgacgccagcgtcctgc 4422868
Query: 320 tcctctgcttcgacgtcaccagcccacacagctttgacaacatctctaaccgg 372
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4422869 tcctctgcttcgacgtcaccagcccacacagctttgacaacatctctaaccgg 4422921
Score = 180 bits (91), Expect = 9e-43
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 173 agagctacaccccgacggtgttcgagcggctgggcgtgaatctgcagatgaagggcggac 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4422002 agagctacaccccgacggtgttcgagcggctgggcgtgaatctgcagatgaagggcggac 4422061
Query: 233 ccgtgcgcctccaaatctgggacacggcagg 263
|||||||||||||||||||||||||||||||
Sbjct: 4422062 ccgtgcgcctccaaatctgggacacggcagg 4422092
>Sscrofa_Chr10
|| Length = 79102373
Score = 65.9 bits (33), Expect = 4e-08
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 372 gtggtacccagaggtgaatcacttctgcaaggaggtgcccatcat 416
||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct: 77403038 gtggtacccagagctgagtcacttctgcaaggagctgcccatcat 77402994
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,592,709
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 7
Length of query: 958
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 937
Effective length of database: 2,808,413,156
Effective search space: 2631483127172
Effective search space used: 2631483127172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)