Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013532
(1158 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534758.2| PREDICTED: similar to Ran-specific GTPase-activ... 322 3e-88
Alignment gi|XP_531768.2| PREDICTED: similar to RAN-binding protein 2-lik... 118 1e-26
>ref|XP_534758.2| PREDICTED: similar to Ran-specific GTPase-activating protein (Ran
binding protein 1) (RANBP1) (HpaII tiny fragments locus
9a protein) [Canis familiaris].
Length = 208
Score = 322 bits (826), Expect = 3e-88
Identities = 165/208 (79%), Positives = 169/208 (81%), Gaps = 2/208 (0%)
Frame = +3
Query: 264 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFAS 443
MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLP LFKMRAKLFRFAS
Sbjct: 1 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS 60
Query: 444 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 623
ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
Sbjct: 61 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 120
Query: 624 VWNTHADFADECPKQELLAIRFLNAENAQKFKTXXXXXXXXXXXXXXXGSGKNDSAEKVA 803
VWNTHADFADECPK ELLAIRFLNAENAQKFKT GSGKND AEKV
Sbjct: 121 VWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGSGKNDDAEKVT 180
Query: 804 EKLEALSVKAGTEPQD--EAKQPAEEEQ 881
EKLEALSVK ++ + E+K AEEEQ
Sbjct: 181 EKLEALSVKEESKESEDTESKAGAEEEQ 208
>ref|XP_531768.2| PREDICTED: similar to RAN-binding protein 2-like 1 isoform 1 [Canis
familiaris].
Length = 2235
Score = 118 bits (295), Expect = 1e-26
Identities = 66/154 (42%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
Frame = +3
Query: 264 MAAAKDTHEDHDTSTEN-ADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRF 437
MA DT D + + E + D FEP+V +P L+ R KLFRF
Sbjct: 986 MADKADTSADLEKDDDAYRTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRF 1045
Query: 438 ASENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDR 617
+E + +WKERG G++K+LK++ G +R+LMRR++ LK+CANH+IT M LKP +GSDR
Sbjct: 1046 DAE--ISQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDR 1103
Query: 618 AWVWNTHADFADECPKQELLAIRFLNAENAQKFK 719
AW+W +DF+D K E LA +F E A++FK
Sbjct: 1104 AWMW-LASDFSDGDAKLEQLAAKFKTPELAEEFK 1136
Score = 110 bits (275), Expect = 3e-24
Identities = 64/136 (47%), Positives = 79/136 (58%)
Frame = +3
Query: 288 EDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFASENDLPEWK 467
ED D S E N D FEPIVSLP LFK RAKL+R+ + D+ +WK
Sbjct: 1913 EDEDDSDEEVVH-NEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRW--DRDVSQWK 1969
Query: 468 ERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 647
ERG GD+K+L H K R+LMRRD+ K+CANH IT MELKP S+ A VW T +D+
Sbjct: 1970 ERGVGDIKILWHTLKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVW-TASDY 2028
Query: 648 ADECPKQELLAIRFLN 695
AD+ P + F N
Sbjct: 2029 ADDEPLGRITMELFSN 2044
Score = 108 bits (270), Expect = 1e-23
Identities = 61/147 (41%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Frame = +3
Query: 282 THEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLP 458
T E+ D + E + + FEP+V LP + F RAKL+R+ + D+
Sbjct: 1293 TDEESDVTQEEERDGQY---FEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRY--DKDVG 1347
Query: 459 EWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTH 638
+WKERG GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R WVW T
Sbjct: 1348 QWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWVW-TA 1406
Query: 639 ADFADECPKQELLAIRFLNAENAQKFK 719
DFAD K E LA+RF + A FK
Sbjct: 1407 CDFADGERKVEHLAVRFKLQDVADSFK 1433
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,928,584
Number of extensions: 685420
Number of successful extensions: 2575
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2565
Number of HSP's successfully gapped: 4
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013532
(1158 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029758.1| ran-specific GTPase-activating protein [Bos ... 333 2e-91
Alignment gi|XP_002694731.1| PREDICTED: RAN binding protein 1-like [Bos t... 184 2e-46
Alignment gi|XP_002686166.1| PREDICTED: ran-specific GTPase-activating pr... 152 5e-37
Alignment gi|XP_876380.3| PREDICTED: ran-specific GTPase-activating prote... 150 2e-36
Alignment gi|NP_777017.1| E3 SUMO-protein ligase RanBP2 [Bos taurus]. 135 5e-32
>ref|NP_001029758.1| ran-specific GTPase-activating protein [Bos taurus].
Length = 206
Score = 333 bits (853), Expect = 2e-91
Identities = 167/206 (81%), Positives = 169/206 (82%)
Frame = +3
Query: 264 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFAS 443
MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLP LFKMRAKLFRFAS
Sbjct: 1 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS 60
Query: 444 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 623
ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
Sbjct: 61 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 120
Query: 624 VWNTHADFADECPKQELLAIRFLNAENAQKFKTXXXXXXXXXXXXXXXGSGKNDSAEKVA 803
VWNTHADFADECPKQELLAIRFLNAENAQKFKT GSGKNDS EKV
Sbjct: 121 VWNTHADFADECPKQELLAIRFLNAENAQKFKTKFEECRKEIEEKEKKGSGKNDSTEKVV 180
Query: 804 EKLEALSVKAGTEPQDEAKQPAEEEQ 881
EKLEALSV+ G +PQD A EEEQ
Sbjct: 181 EKLEALSVQEGEQPQDAAPAAVEEEQ 206
>ref|XP_002694731.1| PREDICTED: RAN binding protein 1-like [Bos taurus].
Length = 126
Score = 184 bits (466), Expect = 2e-46
Identities = 90/103 (87%), Positives = 90/103 (87%)
Frame = +3
Query: 264 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFAS 443
MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLP LFKMRAKLFRFAS
Sbjct: 1 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS 60
Query: 444 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHY 572
ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHY
Sbjct: 61 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHY 103
>ref|XP_002686166.1| PREDICTED: ran-specific GTPase-activating protein-like [Bos
taurus].
Length = 111
Score = 152 bits (384), Expect = 5e-37
Identities = 78/105 (74%), Positives = 81/105 (77%)
Frame = +3
Query: 546 TLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKQELLAIRFLNAENAQKFKTX 725
TLKI NHYITPMMELKPNAGSD AWVWNTHADFADECPKQELLAIRFLNAENAQKFKT
Sbjct: 8 TLKI--NHYITPMMELKPNAGSDHAWVWNTHADFADECPKQELLAIRFLNAENAQKFKTK 65
Query: 726 XXXXXXXXXXXXXXGSGKNDSAEKVAEKLEALSVKAGTEPQDEAK 860
SGKNDS EKV EKLEALSV+ G +PQD A+
Sbjct: 66 FEECRKEIEEKEKKESGKNDSTEKVVEKLEALSVQEGEQPQDAAE 110
>ref|XP_876380.3| PREDICTED: ran-specific GTPase-activating protein-like [Bos
taurus].
Length = 162
Score = 150 bits (379), Expect = 2e-36
Identities = 74/99 (74%), Positives = 77/99 (77%)
Frame = +3
Query: 564 NHYITPMMELKPNAGSDRAWVWNTHADFADECPKQELLAIRFLNAENAQKFKTXXXXXXX 743
NHYITPMMELKPNAGSD AWVWNTHADFADECPKQELLAIRFLNAENAQKFKT
Sbjct: 63 NHYITPMMELKPNAGSDHAWVWNTHADFADECPKQELLAIRFLNAENAQKFKTKFEECRK 122
Query: 744 XXXXXXXXGSGKNDSAEKVAEKLEALSVKAGTEPQDEAK 860
SGKNDS EKV EKLEALSV+ G +PQD A+
Sbjct: 123 EIEEKEKKESGKNDSTEKVVEKLEALSVQEGEQPQDAAE 161
>ref|NP_777017.1| E3 SUMO-protein ligase RanBP2 [Bos taurus].
Length = 3035
Score = 135 bits (341), Expect = 5e-32
Identities = 75/144 (52%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Frame = +3
Query: 291 DHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASENDLPEWK 467
D D + DE + P FEP+V LP F RAKL+RF + + EWK
Sbjct: 1151 DADGGSAQGDEEDDGPHFEPVVPLPDKIEVRTGEEDEEEFFCNRAKLYRFDAASR--EWK 1208
Query: 468 ERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 647
ERG G+VK+L+HK G IRLLMRR++ LKICANHYI+P M L PNAGSDR++VW D+
Sbjct: 1209 ERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMALAPNAGSDRSFVWYA-LDY 1267
Query: 648 ADECPKQELLAIRFLNAENAQKFK 719
ADE PK E LAIRF E A FK
Sbjct: 1268 ADESPKPEQLAIRFKTPEEAALFK 1291
Score = 119 bits (298), Expect = 5e-27
Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Frame = +3
Query: 270 AAKDTHEDHDT-STENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFAS 443
A D +D D TE++D D FEP+V +P L+ R KLFRF +
Sbjct: 1807 ACADLEKDDDAYKTEDSD----DIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDA 1862
Query: 444 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 623
E + +WKERG G++K+LK++ G +R+LMRR++ LK+CANH+IT M LKP +GSDRAW
Sbjct: 1863 E--ISQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMHLKPLSGSDRAW 1920
Query: 624 VWNTHADFADECPKQELLAIRFLNAENAQKFK 719
+W +DF+D K E LA +F E A++FK
Sbjct: 1921 MW-LASDFSDGDAKLEQLAAKFKTPELAEEFK 1951
Score = 119 bits (297), Expect = 7e-27
Identities = 70/144 (48%), Positives = 84/144 (58%)
Frame = +3
Query: 288 EDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFASENDLPEWK 467
ED D S E N D FEPIVSLP LFK RAKL+R+ + + +WK
Sbjct: 2706 EDEDGSDEEVVH-NEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRW--DREASQWK 2762
Query: 468 ERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 647
ERG GD+K+L H K R+LMRRD+ K+CANH IT MELKP S+ A VW T +D+
Sbjct: 2763 ERGVGDIKILWHTVKNYFRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVW-TASDY 2821
Query: 648 ADECPKQELLAIRFLNAENAQKFK 719
AD K E LA+RF E A FK
Sbjct: 2822 ADGEAKVEQLAVRFKTKEMADCFK 2845
Score = 113 bits (282), Expect = 4e-25
Identities = 65/151 (43%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 270 AAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASE 446
A+ T ED D + E + H FEP+V LP + F RAKL+R+ +
Sbjct: 2104 ASVGTDEDSDVTQEEERDGQH---FEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRY--D 2158
Query: 447 NDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWV 626
D +WKERG GD+K+L++ E +R++MRRD+ LK+CANH ITP M L+ G++R WV
Sbjct: 2159 KDAGQWKERGIGDIKILQNYENKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWV 2218
Query: 627 WNTHADFADECPKQELLAIRFLNAENAQKFK 719
W T DFAD K E LA+RF + A FK
Sbjct: 2219 W-TACDFADGERKIEHLAVRFKLQDVADSFK 2248
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,545,456
Number of extensions: 670857
Number of successful extensions: 2379
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2369
Number of HSP's successfully gapped: 8
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013532
(1158 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171999.1| ran-specific GTPase-activating protein [Sus ... 354 5e-98
Alignment gi|XP_003124897.2| PREDICTED: e3 SUMO-protein ligase RanBP2 [Su... 119 3e-27
>ref|NP_001171999.1| ran-specific GTPase-activating protein [Sus scrofa].
Length = 206
Score = 354 bits (909), Expect = 5e-98
Identities = 178/206 (86%), Positives = 178/206 (86%)
Frame = +3
Query: 264 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFAS 443
MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLP LFKMRAKLFRFAS
Sbjct: 1 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS 60
Query: 444 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 623
ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
Sbjct: 61 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 120
Query: 624 VWNTHADFADECPKQELLAIRFLNAENAQKFKTXXXXXXXXXXXXXXXGSGKNDSAEKVA 803
VWNTHADFADECPKQELLAIRFLNAENAQKFKT GSGKNDSAEKVA
Sbjct: 121 VWNTHADFADECPKQELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGSGKNDSAEKVA 180
Query: 804 EKLEALSVKAGTEPQDEAKQPAEEEQ 881
EKLEALSVKAGTEPQDEAKQPAEEEQ
Sbjct: 181 EKLEALSVKAGTEPQDEAKQPAEEEQ 206
>ref|XP_003124897.2| PREDICTED: e3 SUMO-protein ligase RanBP2 [Sus scrofa].
Length = 659
Score = 119 bits (298), Expect = 3e-27
Identities = 70/144 (48%), Positives = 85/144 (59%)
Frame = +3
Query: 288 EDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFASENDLPEWK 467
ED D S E N D FEPIVSLP LFK RAKL+R+ + ++ +WK
Sbjct: 329 EDEDGSDEEVVH-NEDIHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRW--DREVSQWK 385
Query: 468 ERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 647
ERG GD+K+L H K R+LMRRD+ K+CANH IT MELKP S+ A VW T +D+
Sbjct: 386 ERGVGDIKILWHTMKSYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVW-TASDY 444
Query: 648 ADECPKQELLAIRFLNAENAQKFK 719
AD K E LA+RF E A FK
Sbjct: 445 ADGEAKVEQLAVRFKTKEMADCFK 468
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,200,933
Number of extensions: 451824
Number of successful extensions: 1569
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013532
(1158 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035369.2| ran-specific GTPase-activating protein [Mus mus... 320 1e-87
Alignment gi|NP_035370.2| E3 SUMO-protein ligase RanBP2 [Mus musculus]. 142 5e-34
>ref|NP_035369.2| ran-specific GTPase-activating protein [Mus musculus].
Length = 203
Score = 320 bits (821), Expect = 1e-87
Identities = 162/206 (78%), Positives = 171/206 (83%)
Frame = +3
Query: 264 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFAS 443
MAAAKD+HEDHDTSTENADESNHDPQFEPIVSLP LFKMRAKLFRFAS
Sbjct: 1 MAAAKDSHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS 60
Query: 444 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 623
ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
Sbjct: 61 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 120
Query: 624 VWNTHADFADECPKQELLAIRFLNAENAQKFKTXXXXXXXXXXXXXXXGSGKNDSAEKVA 803
VWNTHADFADECPK ELLAIRFLNAENAQKFKT G GKND+AEKVA
Sbjct: 121 VWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVA 180
Query: 804 EKLEALSVKAGTEPQDEAKQPAEEEQ 881
EKLEALSV+ E ++EA++ +EE+Q
Sbjct: 181 EKLEALSVR---EAREEAEEKSEEKQ 203
>ref|NP_035370.2| E3 SUMO-protein ligase RanBP2 [Mus musculus].
Length = 3053
Score = 142 bits (358), Expect = 5e-34
Identities = 80/154 (51%), Positives = 100/154 (64%), Gaps = 3/154 (1%)
Frame = +3
Query: 267 AAAKDTHEDHDTSTENA--DESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRF 437
AA++ ++ H+T +A DE + P FEP+V LP F RAKLFRF
Sbjct: 1139 AASELANKSHETDGGSAHGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRF 1198
Query: 438 ASENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDR 617
E+ EWKERG G+VK+L+HK G IRLLMRR++ LKICANHYI+P M+L PNAGSDR
Sbjct: 1199 DGESK--EWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDR 1256
Query: 618 AWVWNTHADFADECPKQELLAIRFLNAENAQKFK 719
++VW+ D+ADE PK E LAIRF E A FK
Sbjct: 1257 SFVWHA-LDYADELPKPEQLAIRFKTPEEAALFK 1289
Score = 120 bits (301), Expect = 2e-27
Identities = 70/144 (48%), Positives = 86/144 (59%)
Frame = +3
Query: 288 EDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFASENDLPEWK 467
ED D S E+ N D FEPIVSLP LFK RAKL+R+ + D+ +WK
Sbjct: 2724 EDEDGSDEDVVH-NEDIHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRW--DRDVSQWK 2780
Query: 468 ERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 647
ERG GD+K+L H K R+LMRRD+ K+CANH IT MELKP S+ A VW T +D+
Sbjct: 2781 ERGIGDIKILWHTMKKYYRILMRRDQVFKVCANHVITKAMELKPLNVSNNALVW-TASDY 2839
Query: 648 ADECPKQELLAIRFLNAENAQKFK 719
AD K E LA+RF E + FK
Sbjct: 2840 ADGEAKVEQLAVRFKTKEMTESFK 2863
Score = 118 bits (296), Expect = 8e-27
Identities = 66/151 (43%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Frame = +3
Query: 273 AKDTHEDHDT-STENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASE 446
+ D +D D TE++D D FEP+V +P L+ R KLFRF +E
Sbjct: 1830 SSDLEKDDDAYKTEDSD----DIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAE 1885
Query: 447 NDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWV 626
+ +WKERG G++K+LK++ G +R+LMRR++ LK+CANH+IT M LKP +GSDRAW+
Sbjct: 1886 --ISQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWM 1943
Query: 627 WNTHADFADECPKQELLAIRFLNAENAQKFK 719
W +DF+D K E LA +F E A++FK
Sbjct: 1944 W-LASDFSDGDAKLEQLAAKFKTPELAEEFK 1973
Score = 109 bits (272), Expect = 5e-24
Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 270 AAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASE 446
A+ T E+ D + E + + FEP+V LP + F RAKL+R+ +
Sbjct: 2126 ASVGTDEESDVTQEEERDGQY---FEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRY--D 2180
Query: 447 NDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWV 626
D+ +WKERG GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R WV
Sbjct: 2181 KDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQTMKGTERVWV 2240
Query: 627 WNTHADFADECPKQELLAIRFLNAENAQKFK 719
W T DFAD K E LA+RF + A FK
Sbjct: 2241 W-TACDFADGERKIEHLAVRFKLQDVADSFK 2270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,580,013
Number of extensions: 562388
Number of successful extensions: 1862
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1856
Number of HSP's successfully gapped: 5
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013532
(1158 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002873.1| ran-specific GTPase-activating protein [Homo sa... 314 9e-86
Alignment gi|NP_006258.3| E3 SUMO-protein ligase RanBP2 [Homo sapiens]. 139 4e-33
Alignment gi|NP_001157935.1| RANBP2-like and GRIP domain-containing prote... 115 6e-26
Alignment gi|NP_001116835.1| RANBP2-like and GRIP domain-containing prote... 115 6e-26
Alignment gi|NP_005045.2| RANBP2-like and GRIP domain-containing protein ... 115 6e-26
Alignment gi|NP_001137485.1| ranBP2-like and GRIP domain-containing prote... 115 1e-25
Alignment gi|NP_001071638.2| RANBP2-like and GRIP domain-containing prote... 114 2e-25
Alignment gi|NP_001019628.3| RANBP2-like and GRIP domain-containing prote... 114 2e-25
Alignment gi|NP_872394.2| ranBP2-like and GRIP domain-containing protein ... 114 2e-25
>ref|NP_002873.1| ran-specific GTPase-activating protein [Homo sapiens].
Length = 201
Score = 314 bits (805), Expect = 9e-86
Identities = 163/207 (78%), Positives = 166/207 (80%), Gaps = 1/207 (0%)
Frame = +3
Query: 264 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFAS 443
MAAAKDTHEDHDTSTEN DESNHDPQFEPIVSLP LFKMRAKLFRFAS
Sbjct: 1 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS 60
Query: 444 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 623
ENDLPEWKERGTGDVKLLKHKEKG IRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
Sbjct: 61 ENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW 120
Query: 624 VWNTHADFADECPKQELLAIRFLNAENAQKFKT-XXXXXXXXXXXXXXXGSGKNDSAEKV 800
VWNTHADFADECPK ELLAIRFLNAENAQKFKT GSGKND AEKV
Sbjct: 121 VWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKV 180
Query: 801 AEKLEALSVKAGTEPQDEAKQPAEEEQ 881
AEKLEALSVK +E K+ AEE+Q
Sbjct: 181 AEKLEALSVK------EETKEDAEEKQ 201
>ref|NP_006258.3| E3 SUMO-protein ligase RanBP2 [Homo sapiens].
Length = 3224
Score = 139 bits (351), Expect = 4e-33
Identities = 78/153 (50%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +3
Query: 264 MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFA 440
+ A HE D + + D+ + P FEP+V LP F RAKLFRF
Sbjct: 1147 LETANKNHET-DGGSAHGDDDDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFD 1205
Query: 441 SENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRA 620
E+ EWKERG G+VK+L+HK G IRLLMRR++ LKICANHYI+P M+L PNAGSDR+
Sbjct: 1206 VESK--EWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRS 1263
Query: 621 WVWNTHADFADECPKQELLAIRFLNAENAQKFK 719
+VW+ D+ADE PK E LAIRF E A FK
Sbjct: 1264 FVWHA-LDYADELPKPEQLAIRFKTPEEAALFK 1295
Score = 120 bits (301), Expect = 2e-27
Identities = 71/144 (49%), Positives = 85/144 (59%)
Frame = +3
Query: 288 EDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXLFKMRAKLFRFASENDLPEWK 467
ED D S E N D FEPIVSLP LFK RAKL+R+ + D+ +WK
Sbjct: 2895 EDEDGSDEEVVH-NEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRW--DRDVSQWK 2951
Query: 468 ERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 647
ERG GD+K+L H K R+LMRRD+ K+CANH IT MELKP S+ A VW T +D+
Sbjct: 2952 ERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVW-TASDY 3010
Query: 648 ADECPKQELLAIRFLNAENAQKFK 719
AD K E LA+RF E A FK
Sbjct: 3011 ADGEAKVEQLAVRFKTKEVADCFK 3034
Score = 117 bits (293), Expect = 2e-26
Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Frame = +3
Query: 279 DTHEDHDT-STENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASEND 452
D +D D TE++D D FEP+V +P L+ R KLFRF +E
Sbjct: 1995 DFEKDDDAYKTEDSD----DIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAE-- 2048
Query: 453 LPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWN 632
+ +WKERG G++K+LK++ G +R+LMRR++ LK+CANH+IT M LKP +GSDRAW+W
Sbjct: 2049 VSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMW- 2107
Query: 633 THADFADECPKQELLAIRFLNAENAQKFK 719
+DF+D K E LA +F E A++FK
Sbjct: 2108 LASDFSDGDAKLEQLAAKFKTPELAEEFK 2136
Score = 107 bits (267), Expect = 2e-23
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Frame = +3
Query: 282 THEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLP 458
T E+ D + E + + FEP+V LP + F RAKL+R+ + D+
Sbjct: 2293 TDEESDVTQEEERDGQY---FEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRY--DKDVG 2347
Query: 459 EWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTH 638
+WKERG GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R W+W T
Sbjct: 2348 QWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLW-TA 2406
Query: 639 ADFADECPKQELLAIRFLNAENAQKFK 719
DFAD K E LA+RF + A FK
Sbjct: 2407 CDFADGERKVEHLAVRFKLQDVADSFK 2433
>ref|NP_001157935.1| RANBP2-like and GRIP domain-containing protein 8 [Homo sapiens].
Length = 1765
Score = 115 bits (289), Expect = 6e-26
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Frame = +3
Query: 279 DTHEDHDT-STENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASEND 452
D +D D TE++D D FEP+V +P L+ KLFRF +E
Sbjct: 1019 DFEKDDDAYKTEDSD----DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE-- 1072
Query: 453 LPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWN 632
+ +WKERG G++K+LK++ G +R+LMRR++ LK+CANH+IT M LKP +GSDRAW+W+
Sbjct: 1073 VRQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWS 1132
Query: 633 THADFADECPKQELLAIRFLNAENAQKFK 719
+DF+D K E LA +F E A++FK
Sbjct: 1133 A-SDFSDGDAKLERLAAKFKTPELAEEFK 1160
Score = 105 bits (262), Expect = 8e-23
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Frame = +3
Query: 297 DTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLPEWKER 473
+ S +E FEP+V LP + F RA+++R+ + D+ +WKER
Sbjct: 1319 EESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRY--DKDVGQWKER 1376
Query: 474 GTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFAD 653
G GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R WVW T DFAD
Sbjct: 1377 GIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVW-TACDFAD 1435
Query: 654 ECPKQELLAIRFLNAENAQKFK 719
K E LA+RF + A FK
Sbjct: 1436 GERKVEHLAVRFKLQDVADSFK 1457
>ref|NP_001116835.1| RANBP2-like and GRIP domain-containing protein 5/6 isoform 1 [Homo
sapiens].
Length = 1765
Score = 115 bits (289), Expect = 6e-26
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Frame = +3
Query: 279 DTHEDHDT-STENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASEND 452
D +D D TE++D D FEP+V +P L+ KLFRF +E
Sbjct: 1019 DFEKDDDAYKTEDSD----DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE-- 1072
Query: 453 LPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWN 632
+ +WKERG G++K+LK++ G +R+LMRR++ LK+CANH+IT M LKP +GSDRAW+W+
Sbjct: 1073 VRQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWS 1132
Query: 633 THADFADECPKQELLAIRFLNAENAQKFK 719
+DF+D K E LA +F E A++FK
Sbjct: 1133 A-SDFSDGDAKLERLAAKFKTPELAEEFK 1160
Score = 105 bits (262), Expect = 8e-23
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Frame = +3
Query: 297 DTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLPEWKER 473
+ S +E FEP+V LP + F RA+++R+ + D+ +WKER
Sbjct: 1319 EESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRY--DKDVGQWKER 1376
Query: 474 GTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFAD 653
G GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R WVW T DFAD
Sbjct: 1377 GIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVW-TACDFAD 1435
Query: 654 ECPKQELLAIRFLNAENAQKFK 719
K E LA+RF + A FK
Sbjct: 1436 GERKVEHLAVRFKLQDVADSFK 1457
>ref|NP_005045.2| RANBP2-like and GRIP domain-containing protein 5/6 isoform 1 [Homo
sapiens].
Length = 1765
Score = 115 bits (289), Expect = 6e-26
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Frame = +3
Query: 279 DTHEDHDT-STENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASEND 452
D +D D TE++D D FEP+V +P L+ KLFRF +E
Sbjct: 1019 DFEKDDDAYKTEDSD----DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE-- 1072
Query: 453 LPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWN 632
+ +WKERG G++K+LK++ G +R+LMRR++ LK+CANH+IT M LKP +GSDRAW+W+
Sbjct: 1073 VRQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWS 1132
Query: 633 THADFADECPKQELLAIRFLNAENAQKFK 719
+DF+D K E LA +F E A++FK
Sbjct: 1133 A-SDFSDGDAKLERLAAKFKTPELAEEFK 1160
Score = 105 bits (262), Expect = 8e-23
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Frame = +3
Query: 297 DTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLPEWKER 473
+ S +E FEP+V LP + F RA+++R+ + D+ +WKER
Sbjct: 1319 EESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRY--DKDVGQWKER 1376
Query: 474 GTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFAD 653
G GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R WVW T DFAD
Sbjct: 1377 GIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVW-TACDFAD 1435
Query: 654 ECPKQELLAIRFLNAENAQKFK 719
K E LA+RF + A FK
Sbjct: 1436 GERKVEHLAVRFKLQDVADSFK 1457
>ref|NP_001137485.1| ranBP2-like and GRIP domain-containing protein 3 [Homo sapiens].
Length = 1758
Score = 115 bits (287), Expect = 1e-25
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Frame = +3
Query: 279 DTHEDHDT-STENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASEND 452
D +D D TE++D D FEP+V +P L+ KLFRF +E
Sbjct: 1020 DFEKDDDAYKTEDSD----DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE-- 1073
Query: 453 LPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWN 632
+ +WKERG G++K+LK++ G +R+LM+R++ LK+CANH+IT M LKP +GSDRAW+W+
Sbjct: 1074 VSQWKERGLGNLKILKNEVNGKVRMLMQREQVLKVCANHWITTTMNLKPLSGSDRAWMWS 1133
Query: 633 THADFADECPKQELLAIRFLNAENAQKFK 719
+DF+D K E LA +F E A++FK
Sbjct: 1134 A-SDFSDGDAKLERLAAKFKTPELAEEFK 1161
Score = 106 bits (265), Expect = 4e-23
Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +3
Query: 282 THEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLP 458
T E+ D + E + + FEP+V LP + F RA+ +R+ + D+
Sbjct: 1318 TDEESDVTQEEERDGQY---FEPVVPLPDLVEVSSGEENEQVVFSHRAEFYRY--DKDVG 1372
Query: 459 EWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTH 638
+WKERG GD+K+L++ + +R+LMRRD+ LK+CANH ITP M L+ G++R WVW T
Sbjct: 1373 QWKERGIGDIKILQNYDNKHVRILMRRDQVLKLCANHRITPDMSLQNMKGTERVWVW-TA 1431
Query: 639 ADFADECPKQELLAIRFLNAENAQKFK 719
DFAD K E LA+RF + A FK
Sbjct: 1432 CDFADGERKVEHLAVRFKLQDVADSFK 1458
>ref|NP_001071638.2| RANBP2-like and GRIP domain-containing protein 2 [Homo sapiens].
Length = 1756
Score = 114 bits (285), Expect = 2e-25
Identities = 64/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Frame = +3
Query: 288 EDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASENDLPEW 464
+D TE++D D FEP+V +P L+ KLFRF +E + +W
Sbjct: 1016 DDDACKTEDSD----DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE--ISQW 1069
Query: 465 KERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHAD 644
KERG G++K+LK++ G R+LMRRD+ LK+CANH+IT M LKP +GSDRAW+W +D
Sbjct: 1070 KERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMW-LASD 1128
Query: 645 FADECPKQELLAIRFLNAENAQKFK 719
F+D K E LA +F E A++FK
Sbjct: 1129 FSDGDAKLERLAAQFKTPELAEEFK 1153
Score = 105 bits (261), Expect = 1e-22
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +3
Query: 282 THEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLP 458
T E+ D + E + + FEP+V LP + F A+L+R+ + D+
Sbjct: 1310 TDEESDVTQEEERDGQY---FEPVVPLPDLVEVSSGEENEQVVFSHMAELYRY--DKDVG 1364
Query: 459 EWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTH 638
+WKERG GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R WVW T
Sbjct: 1365 QWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVW-TA 1423
Query: 639 ADFADECPKQELLAIRFLNAENAQKFK 719
DFAD K E LA+RF + A FK
Sbjct: 1424 CDFADGERKVEHLAVRFKLQDVADSFK 1450
>ref|NP_001019628.3| RANBP2-like and GRIP domain-containing protein 1/2 [Homo sapiens].
Length = 1748
Score = 114 bits (285), Expect = 2e-25
Identities = 64/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Frame = +3
Query: 288 EDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASENDLPEW 464
+D TE++D D FEP+V +P L+ KLFRF +E + +W
Sbjct: 1008 DDDACKTEDSD----DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE--ISQW 1061
Query: 465 KERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHAD 644
KERG G++K+LK++ G R+LMRRD+ LK+CANH+IT M LKP +GSDRAW+W +D
Sbjct: 1062 KERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMW-LASD 1120
Query: 645 FADECPKQELLAIRFLNAENAQKFK 719
F+D K E LA +F E A++FK
Sbjct: 1121 FSDGDAKLERLAAQFKTPELAEEFK 1145
Score = 107 bits (267), Expect = 2e-23
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Frame = +3
Query: 282 THEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLP 458
T E+ D + E + + FEP+V LP + F RA+L+R+ + D+
Sbjct: 1302 TDEESDVTQEEERDGQY---FEPVVPLPDLVEVSSGEENEQVVFSHRAELYRY--DKDVG 1356
Query: 459 EWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTH 638
+WKERG GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R WVW T
Sbjct: 1357 QWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVW-TA 1415
Query: 639 ADFADECPKQELLAIRFLNAENAQKFK 719
DFAD K E LA+RF + A FK
Sbjct: 1416 CDFADGERKVEHLAVRFKLQDVADSFK 1442
>ref|NP_872394.2| ranBP2-like and GRIP domain-containing protein 4 [Homo sapiens].
Length = 1758
Score = 114 bits (284), Expect = 2e-25
Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
Frame = +3
Query: 279 DTHEDHDT-STENADESNHDPQFEPIVSLPXXXXXXXXXXXXX-LFKMRAKLFRFASEND 452
D +D D TE++D D FEP+V +P L+ KLFRF +E
Sbjct: 1020 DFEKDDDAYKTEDSD----DIHFEPVVQMPEKVELVIGEEGEKVLYSQGVKLFRFDAE-- 1073
Query: 453 LPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWN 632
+ +WKERG G++K+LK++ G R+LMRR++ LK+CANH+IT M LKP +GSDRAW+W+
Sbjct: 1074 VRQWKERGLGNLKILKNEVNGKPRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWS 1133
Query: 633 THADFADECPKQELLAIRFLNAENAQKFK 719
+DF+D K E LA +F E A++FK
Sbjct: 1134 A-SDFSDGDAKLERLAAKFKTPELAEEFK 1161
Score = 107 bits (267), Expect = 2e-23
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Frame = +3
Query: 282 THEDHDTSTENADESNHDPQFEPIVSLPXXXXXXXXXXXXXL-FKMRAKLFRFASENDLP 458
T E+ D + E + + FEP+V LP + F RA+L+R+ + D+
Sbjct: 1318 TDEESDVTQEEERDGQY---FEPVVPLPDLVEVSSGEENEKVVFSHRAELYRY--DKDVG 1372
Query: 459 EWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTH 638
+WKERG GD+K+L++ + +R++MRRD+ LK+CANH ITP M L+ G++R WVW T
Sbjct: 1373 QWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHTITPDMSLQNMKGTERVWVW-TA 1431
Query: 639 ADFADECPKQELLAIRFLNAENAQKFK 719
DFAD K E LA+RF + A FK
Sbjct: 1432 CDFADGERKVEHLAVRFKLQDVADSFK 1458
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,259,574
Number of extensions: 674085
Number of successful extensions: 2436
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2413
Number of HSP's successfully gapped: 19
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013532
(1158 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 313 1e-82
Sscrofa_Chr15 147 2e-32
Sscrofa_Chr05 100 3e-18
>Sscrofa_Chr14
|| Length = 153851969
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 416 gcgggcaaagctcttccggtttgcttcagagaacgacctcccagagtggaaggagcgagg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55134421 gcgggcaaagctcttccggtttgcttcagagaacgacctcccagagtggaaggagcgagg 55134480
Query: 476 cactggggacgtcaagcttctgaagcacaaggagaaggggaccatccgcctcctcatgcg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55134481 cactggggacgtcaagcttctgaagcacaaggagaaggggaccatccgcctcctcatgcg 55134540
Query: 536 aagggacaagacactcaagatctgcgccaatcactaca 573
||||||||||||||||||||||||||||||||||||||
Sbjct: 55134541 aagggacaagacactcaagatctgcgccaatcactaca 55134578
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 769 gatctggcaaaaacgatagtgctgagaaagtggccgagaagctagaagcactctcggtga 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55137053 gatctggcaaaaacgatagtgctgagaaagtggccgagaagctagaagcactctcggtga 55137112
Query: 829 aggcgggcacggagccgcaggacgaggccaagcagccggccgaggaggagcaatgagtcg 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55137113 aggcgggcacggagccgcaggacgaggccaagcagccggccgaggaggagcaatgagtcg 55137172
Query: 889 gctcccacgtccctttctccctg 911
|||||||||||||||||||||||
Sbjct: 55137173 gctcccacgtccctttctccctg 55137195
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 277 aggacacccatgaggaccacgacacctccaccgagaatgctgacgagtctaaccatgacc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55132558 aggacacccatgaggaccacgacacctccaccgagaatgctgacgagtctaaccatgacc 55132617
Query: 337 cccagtttgagccgatagtttctcttcctgagcaagaaattaaaacgctggaagaagatg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55132618 cccagtttgagccgatagtttctcttcctgagcaagaaattaaaacgctggaagaagatg 55132677
Query: 397 aggaggagctttttaaaatg 416
||||||||||||||||||||
Sbjct: 55132678 aggaggagctttttaaaatg 55132697
Score = 266 bits (134), Expect = 2e-68
Identities = 166/177 (93%), Gaps = 2/177 (1%)
Strand = Plus / Plus
Query: 984 acaagggactttatataaaagaactgacttccgacattcaggttgnnnnnnnnnctcagt 1043
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 55137268 acaagggactttatataaaagaactgacttccgacattcaggttgtttttttttctcagt 55137327
Query: 1044 tattgccctattgaagatgacttcagagaaccccttccccagtcatgagaatgtactctg 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55137328 tattgccctattgaagatgacttcagagaaccccttccccagtcatgagaatgtactctg 55137387
Query: 1104 ctaactttcttttccacagtggaaacactta-ttatagtcatc-aaatagtgaataa 1158
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 55137388 ctaactttcttttccacagtggaaacacttatttatagtcatcaaaatagtgaataa 55137444
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 574 tcacgccgatgatggagctgaaaccgaacgcaggcagtgaccgtgcctgggtctggaaca 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55135849 tcacgccgatgatggagctgaaaccgaacgcaggcagtgaccgtgcctgggtctggaaca 55135908
Query: 634 cccacgctgacttcgccgacgagtgccccaagcaggagctgctggccattcgcttcctta 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55135909 cccacgctgacttcgccgacgagtgccccaagcaggagctgctggccattcgcttcctta 55135968
Query: 694 acgccgaga 702
|||||||||
Sbjct: 55135969 acgccgaga 55135977
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 cttttggcgggaagcgcggggcgggctggacaatgagagtgtctgccgcctgagccaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55131300 cttttggcgggaagcgcggggcgggctggacaatgagagtgtctgccgcctgagccaata 55131359
Query: 61 aagctgtgctggttttgaatcgcggcgcgtttcccgccgc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 55131360 aagctgtgctggttttgaatcgcggcgcgtttcccgccgc 55131399
Score = 165 bits (83), Expect = 7e-38
Identities = 129/143 (90%), Gaps = 1/143 (0%)
Strand = Plus / Minus
Query: 769 gatctggcaaaaacgatagtgctgagaaagtggccgagaagctagaagcactctcggtga 828
|||| ||||||||| ||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 129588076 gatcgggcaaaaactatagtgctgagaaagtggcggagaagctagaagcactcgcagtga 129588017
Query: 829 aggcgggcacggagccgcaggacgaggccaagcagccggccgaggaggagcaatgagtcg 888
|| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 129588016 agaagggcacaaagccataggacgaggccaagcagacggccgaggaggagcaatgagtcg 129587957
Query: 889 gctcccacgtccctttctccctg 911
|| ||||| ||||||||||||||
Sbjct: 129587956 gc-cccacatccctttctccctg 129587935
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 169 ccagacgcggaggaagaagctgcgaccagccgccgagaggccgcggagcccgcgacgacc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55131468 ccagacgcggaggaagaagctgcgaccagccgccgagaggccgcggagcccgcgacgacc 55131527
Query: 229 gagcccgccgaatt 242
||||||||||||||
Sbjct: 55131528 gagcccgccgaatt 55131541
>Sscrofa_Chr15
|| Length = 157681621
Score = 147 bits (74), Expect = 2e-32
Identities = 142/162 (87%), Gaps = 5/162 (3%)
Strand = Plus / Minus
Query: 984 acaagggactttatataaaagaactgacttccgacattcaggttgnnnnnnnnnctcagt 1043
||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct: 103942785 acaagggactttatataaa-gaactgacttccaacattcaggttgttttgtg--ctcagt 103942729
Query: 1044 tattgccctattgaagatgacttcagagaaccccttccccagtcatgagaatgtactctg 1103
| |||||||||||| |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 103942728 ttttgccctattgaggatgacttcagaaaatcctttccccagtcacgagaatgtactctg 103942669
Query: 1104 ctaactttcttttccacagtggaaacacttatt-atagtcat 1144
||||| |||||||||||||||||||||| |||| ||||||||
Sbjct: 103942668 ctaac-ttcttttccacagtggaaacacgtattcatagtcat 103942628
Score = 79.8 bits (40), Expect = 3e-12
Identities = 109/132 (82%)
Strand = Plus / Minus
Query: 777 aaaaacgatagtgctgagaaagtggccgagaagctagaagcactctcggtgaaggcgggc 836
||||||||||| ||||||||||||| ||||||||||| || |||| |||| ||| ||||
Sbjct: 103942985 aaaaacgatagcactgagaaagtggcagagaagctagatgccctctaggtgcaggagggc 103942926
Query: 837 acggagccgcaggacgaggccaagcagccggccgaggaggagcaatgagtcggctcccac 896
|| ||| | |||| ||| ||| | |||| ||| ||||||||||| ||||||||||||
Sbjct: 103942925 acccagctggaggaagagaccatggagccagccagggaggagcaattagtcggctcccat 103942866
Query: 897 gtccctttctcc 908
|| | |||||||
Sbjct: 103942865 gttcttttctcc 103942854
>Sscrofa_Chr05
|| Length = 111506441
Score = 99.6 bits (50), Expect = 3e-18
Identities = 79/87 (90%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 1063 acttcagagaaccccttccccagtcatgagaatgtactctgctaactttcttttccacag 1122
|||||||| || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 69881513 acttcagaaaatcccttccccagtcatgagaatgtactgtg----ctttcttttccacag 69881568
Query: 1123 tggaaacactta-ttatagtcatcaaa 1148
|||||||||||| ||||||||||||||
Sbjct: 69881569 tggaaacacttatttatagtcatcaaa 69881595
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,670,251
Number of extensions: 128
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 13
Length of query: 1158
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1137
Effective length of database: 2,808,413,156
Effective search space: 3193165758372
Effective search space used: 3193165758372
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)