Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013543
(971 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029423.1| tRNA-splicing endonuclease subunit Sen34 [Bo... 441 e-124
>ref|NP_001029423.1| tRNA-splicing endonuclease subunit Sen34 [Bos taurus].
Length = 311
Score = 441 bits (1134), Expect = e-124
Identities = 231/272 (84%), Positives = 234/272 (86%), Gaps = 1/272 (0%)
Frame = +3
Query: 114 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 293
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
Query: 294 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ 473
AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQS LAAEARETRRQELLEKI EGQ
Sbjct: 61 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSTLAAEARETRRQELLEKITEGQ 120
Query: 474 AAKKQKLEQESGTSGGQDAPGHPXXXXXXXXXXXQTAGEQEEA-GSSSPQPGPSNEVTPL 650
AAKK KLEQESGTSG Q+A G Q AGE EEA SSPQPGPSN V PL
Sbjct: 121 AAKKLKLEQESGTSGSQEA-GGKQAAEENEASAGQAAGEHEEAHEGSSPQPGPSNGVAPL 179
Query: 651 PRSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAG 830
P+SALL+QLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAG
Sbjct: 180 PKSALLIQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAG 239
Query: 831 KFGGDFLVYPGDPLRFTPTTSLSAGLPGTPSP 926
KFGGDFLVYPGDPLRF P P P
Sbjct: 240 KFGGDFLVYPGDPLRFHAHYIAQCWAPEDPIP 271
Score = 71.2 bits (173), Expect = 1e-12
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = +2
Query: 866 PAPFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 970
P FHAHYIAQCWAP DPIPLQDLVSAGRLGTSVR
Sbjct: 252 PLRFHAHYIAQCWAPEDPIPLQDLVSAGRLGTSVR 286
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,668,111
Number of extensions: 1423935
Number of successful extensions: 10846
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10480
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013543
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013543
(971 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854219.1| PREDICTED: similar to tRNA-splicing endonucleas... 452 e-127
>ref|XP_854219.1| PREDICTED: similar to tRNA-splicing endonuclease subunit SEN34
(tRNA-intron endonuclease SEN34) (HsSen34) (Leukocyte
receptor cluster member 5) [Canis familiaris].
Length = 310
Score = 452 bits (1162), Expect = e-127
Identities = 235/271 (86%), Positives = 237/271 (87%)
Frame = +3
Query: 114 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 293
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
Query: 294 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ 473
AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ
Sbjct: 61 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ 120
Query: 474 AAKKQKLEQESGTSGGQDAPGHPXXXXXXXXXXXQTAGEQEEAGSSSPQPGPSNEVTPLP 653
AAKKQKLEQES S Q+A +P Q GE EEAGSSSPQPGPSN V PLP
Sbjct: 121 AAKKQKLEQESVASESQEASANP-AAAESEAGASQAPGEPEEAGSSSPQPGPSNGVAPLP 179
Query: 654 RSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK 833
RSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK
Sbjct: 180 RSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK 239
Query: 834 FGGDFLVYPGDPLRFTPTTSLSAGLPGTPSP 926
FGGDFLVYPGDPLRF PG P P
Sbjct: 240 FGGDFLVYPGDPLRFHAHYIAQCWAPGDPIP 270
Score = 74.3 bits (181), Expect = 2e-13
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +2
Query: 866 PAPFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 970
P FHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR
Sbjct: 251 PLRFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,507,319
Number of extensions: 1463393
Number of successful extensions: 10737
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10388
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013543
(971 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127450.2| PREDICTED: tRNA-splicing endonuclease subuni... 383 e-107
>ref|XP_003127450.2| PREDICTED: tRNA-splicing endonuclease subunit Sen34-like [Sus
scrofa].
Length = 261
Score = 383 bits (983), Expect = e-107
Identities = 196/221 (88%), Positives = 196/221 (88%), Gaps = 2/221 (0%)
Frame = +3
Query: 270 MPEEARLLAEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQEL 449
MPEEARLLAEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQEL
Sbjct: 1 MPEEARLLAEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQEL 60
Query: 450 LEKIAEGQAAKKQKLEQESGTSGGQDAPGHPXXXXXXXXXXXQTAGEQEEAG--SSSPQP 623
LEKIAEGQAAKKQKLEQESGTSGGQDAPGHP QTAGEQEEAG SSSPQP
Sbjct: 61 LEKIAEGQAAKKQKLEQESGTSGGQDAPGHPAAEENEEASASQTAGEQEEAGEGSSSPQP 120
Query: 624 GPSNEVTPLPRSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWE 803
GPSNEVTPLPRSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWE
Sbjct: 121 GPSNEVTPLPRSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWE 180
Query: 804 RGFFLSAAGKFGGDFLVYPGDPLRFTPTTSLSAGLPGTPSP 926
RGFFLSAAGKFGGDFLVYPGDPLRF PG P P
Sbjct: 181 RGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWAPGDPIP 221
Score = 74.3 bits (181), Expect = 9e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +2
Query: 866 PAPFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 970
P FHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR
Sbjct: 202 PLRFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 236
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,429,491
Number of extensions: 929782
Number of successful extensions: 6736
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6521
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013543
(971 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077130.1| tRNA-splicing endonuclease subunit Sen34 isofor... 429 e-133
Alignment gi|NP_001157676.1| tRNA-splicing endonuclease subunit Sen34 iso... 429 e-133
Alignment gi|NP_001157677.1| tRNA-splicing endonuclease subunit Sen34 iso... 418 e-117
>ref|NP_077130.1| tRNA-splicing endonuclease subunit Sen34 isoform a [Mus musculus].
Length = 316
Score = 429 bits (1102), Expect(2) = e-133
Identities = 220/260 (84%), Positives = 229/260 (88%), Gaps = 5/260 (1%)
Frame = +3
Query: 114 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 293
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLL+PEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLLPEEARLL 60
Query: 294 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ 473
AEIGAVTLVSAPRPDPR H LALASFKRQQEQ FQ+Q+ LAAEARETRRQELLEKI EGQ
Sbjct: 61 AEIGAVTLVSAPRPDPRNHGLALASFKRQQEQSFQDQNTLAAEARETRRQELLEKIVEGQ 120
Query: 474 AAKKQKLEQESGT-SGGQDAPGHPXXXXXXXXXXXQTAGEQEEAG----SSSPQPGPSNE 638
AAKKQKLEQ+SG GGQ+A G Q + EQE A SSSPQPGPSN
Sbjct: 121 AAKKQKLEQDSGADEGGQEAGGSEATQGSETSDDGQPSAEQEGAAPSLDSSSPQPGPSNG 180
Query: 639 VTPLPRSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL 818
VTPLPRSALL+QLATARPRP+KA+PLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL
Sbjct: 181 VTPLPRSALLIQLATARPRPVKAKPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL 240
Query: 819 SAAGKFGGDFLVYPGDPLRF 878
SAAGKFGGDFLVYPGDPLRF
Sbjct: 241 SAAGKFGGDFLVYPGDPLRF 260
Score = 67.0 bits (162), Expect(2) = e-133
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +2
Query: 866 PAPFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 970
P FHAHYIAQCW+ DPIPLQDLVSAGRLGTSVR
Sbjct: 257 PLRFHAHYIAQCWSAEDPIPLQDLVSAGRLGTSVR 291
>ref|NP_001157676.1| tRNA-splicing endonuclease subunit Sen34 isoform a [Mus musculus].
Length = 316
Score = 429 bits (1102), Expect(2) = e-133
Identities = 220/260 (84%), Positives = 229/260 (88%), Gaps = 5/260 (1%)
Frame = +3
Query: 114 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 293
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLL+PEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLLPEEARLL 60
Query: 294 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ 473
AEIGAVTLVSAPRPDPR H LALASFKRQQEQ FQ+Q+ LAAEARETRRQELLEKI EGQ
Sbjct: 61 AEIGAVTLVSAPRPDPRNHGLALASFKRQQEQSFQDQNTLAAEARETRRQELLEKIVEGQ 120
Query: 474 AAKKQKLEQESGT-SGGQDAPGHPXXXXXXXXXXXQTAGEQEEAG----SSSPQPGPSNE 638
AAKKQKLEQ+SG GGQ+A G Q + EQE A SSSPQPGPSN
Sbjct: 121 AAKKQKLEQDSGADEGGQEAGGSEATQGSETSDDGQPSAEQEGAAPSLDSSSPQPGPSNG 180
Query: 639 VTPLPRSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL 818
VTPLPRSALL+QLATARPRP+KA+PLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL
Sbjct: 181 VTPLPRSALLIQLATARPRPVKAKPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL 240
Query: 819 SAAGKFGGDFLVYPGDPLRF 878
SAAGKFGGDFLVYPGDPLRF
Sbjct: 241 SAAGKFGGDFLVYPGDPLRF 260
Score = 67.0 bits (162), Expect(2) = e-133
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +2
Query: 866 PAPFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 970
P FHAHYIAQCW+ DPIPLQDLVSAGRLGTSVR
Sbjct: 257 PLRFHAHYIAQCWSAEDPIPLQDLVSAGRLGTSVR 291
>ref|NP_001157677.1| tRNA-splicing endonuclease subunit Sen34 isoform b [Mus musculus].
Length = 287
Score = 418 bits (1074), Expect = e-117
Identities = 215/255 (84%), Positives = 224/255 (87%), Gaps = 5/255 (1%)
Frame = +3
Query: 114 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 293
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLL+PEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLLPEEARLL 60
Query: 294 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ 473
AEIGAVTLVSAPRPDPR H LALASFKRQQEQ FQ+Q+ LAAEARETRRQELLEKI EGQ
Sbjct: 61 AEIGAVTLVSAPRPDPRNHGLALASFKRQQEQSFQDQNTLAAEARETRRQELLEKIVEGQ 120
Query: 474 AAKKQKLEQESGT-SGGQDAPGHPXXXXXXXXXXXQTAGEQEEAG----SSSPQPGPSNE 638
AAKKQKLEQ+SG GGQ+A G Q + EQE A SSSPQPGPSN
Sbjct: 121 AAKKQKLEQDSGADEGGQEAGGSEATQGSETSDDGQPSAEQEGAAPSLDSSSPQPGPSNG 180
Query: 639 VTPLPRSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL 818
VTPLPRSALL+QLATARPRP+KA+PLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL
Sbjct: 181 VTPLPRSALLIQLATARPRPVKAKPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFL 240
Query: 819 SAAGKFGGDFLVYPG 863
SAAGKFGGDFLVYPG
Sbjct: 241 SAAGKFGGDFLVYPG 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,286,723
Number of extensions: 1135300
Number of successful extensions: 8093
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7792
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013543
(971 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076980.2| tRNA-splicing endonuclease subunit Sen34 [Homo ... 431 e-134
Alignment gi|NP_001070914.1| tRNA-splicing endonuclease subunit Sen34 [Ho... 431 e-134
>ref|NP_076980.2| tRNA-splicing endonuclease subunit Sen34 [Homo sapiens].
Length = 310
Score = 431 bits (1108), Expect(2) = e-134
Identities = 222/255 (87%), Positives = 226/255 (88%)
Frame = +3
Query: 114 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 293
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
Query: 294 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ 473
AEIGAVTLVSAPRPD R HSLAL SFKRQQE+ FQEQSALAAEARETRRQELLEKI EGQ
Sbjct: 61 AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120
Query: 474 AAKKQKLEQESGTSGGQDAPGHPXXXXXXXXXXXQTAGEQEEAGSSSPQPGPSNEVTPLP 653
AAKKQKLEQ SG S Q+A G Q +GEQEEAG SS Q GPSN V PLP
Sbjct: 121 AAKKQKLEQASGASSSQEA-GSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLP 179
Query: 654 RSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK 833
RSALLVQLATARPRP+KARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK
Sbjct: 180 RSALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK 239
Query: 834 FGGDFLVYPGDPLRF 878
FGGDFLVYPGDPLRF
Sbjct: 240 FGGDFLVYPGDPLRF 254
Score = 67.0 bits (162), Expect(2) = e-134
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +2
Query: 866 PAPFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 970
P FHAHYIAQCWAP D IPLQDLV+AGRLGTSVR
Sbjct: 251 PLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVR 285
>ref|NP_001070914.1| tRNA-splicing endonuclease subunit Sen34 [Homo sapiens].
Length = 310
Score = 431 bits (1108), Expect(2) = e-134
Identities = 222/255 (87%), Positives = 226/255 (88%)
Frame = +3
Query: 114 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 293
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
Query: 294 AEIGAVTLVSAPRPDPRQHSLALASFKRQQEQGFQEQSALAAEARETRRQELLEKIAEGQ 473
AEIGAVTLVSAPRPD R HSLAL SFKRQQE+ FQEQSALAAEARETRRQELLEKI EGQ
Sbjct: 61 AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120
Query: 474 AAKKQKLEQESGTSGGQDAPGHPXXXXXXXXXXXQTAGEQEEAGSSSPQPGPSNEVTPLP 653
AAKKQKLEQ SG S Q+A G Q +GEQEEAG SS Q GPSN V PLP
Sbjct: 121 AAKKQKLEQASGASSSQEA-GSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLP 179
Query: 654 RSALLVQLATARPRPIKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK 833
RSALLVQLATARPRP+KARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK
Sbjct: 180 RSALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGK 239
Query: 834 FGGDFLVYPGDPLRF 878
FGGDFLVYPGDPLRF
Sbjct: 240 FGGDFLVYPGDPLRF 254
Score = 67.0 bits (162), Expect(2) = e-134
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +2
Query: 866 PAPFHAHYIAQCWAPGDPIPLQDLVSAGRLGTSVR 970
P FHAHYIAQCWAP D IPLQDLV+AGRLGTSVR
Sbjct: 251 PLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVR 285
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,285,756
Number of extensions: 1411734
Number of successful extensions: 10124
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9833
Number of HSP's successfully gapped: 4
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013543
(971 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 519 e-145
>Sscrofa_Chr06
|| Length = 157765593
Score = 519 bits (262), Expect = e-145
Identities = 262/262 (100%)
Strand = Plus / Plus
Query: 601 caggctcttcctctccccagccggggccttcaaatgaggtcacccctttgcccaggtctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281885 caggctcttcctctccccagccggggccttcaaatgaggtcacccctttgcccaggtctg 53281944
Query: 661 ccctgctcgtccagctggccactgctagacctcggcccatcaaggctaggcccctggact 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281945 ccctgctcgtccagctggccactgctagacctcggcccatcaaggctaggcccctggact 53282004
Query: 721 ggcgtgtccagtccaaagactggccccatgctggccgtcctgcccacgagcttcgctaca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53282005 ggcgtgtccagtccaaagactggccccatgctggccgtcctgcccacgagcttcgctaca 53282064
Query: 781 gcatctacagagacctgtgggagcggggcttcttcctcagtgctgctggcaagtttgggg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53282065 gcatctacagagacctgtgggagcggggcttcttcctcagtgctgctggcaagtttgggg 53282124
Query: 841 gagacttcctggtgtatcctgg 862
||||||||||||||||||||||
Sbjct: 53282125 gagacttcctggtgtatcctgg 53282146
Score = 494 bits (249), Expect = e-137
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 356 ggctttggcatccttcaagcgccagcaagagcagggcttccaggagcaaagtgctctggc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281518 ggctttggcatccttcaagcgccagcaagagcagggcttccaggagcaaagtgctctggc 53281577
Query: 416 agctgaggcccgtgagactcgtcgtcaggagctcctagagaagattgcagagggccaggc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281578 agctgaggcccgtgagactcgtcgtcaggagctcctagagaagattgcagagggccaggc 53281637
Query: 476 tgcgaagaagcagaagctggaacaggaatcagggaccagtggaggccaggatgcccctgg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281638 tgcgaagaagcagaagctggaacaggaatcagggaccagtggaggccaggatgcccctgg 53281697
Query: 536 gcacccagctgctgaagagaatgaggaggccagtgctagccagactgctggagaacagga 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281698 gcacccagctgctgaagagaatgaggaggccagtgctagccagactgctggagaacagga 53281757
Query: 596 ggaagcagg 604
|||||||||
Sbjct: 53281758 ggaagcagg 53281766
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 184 aacgcctaggagtagggggccgcacggtgggcgccctgccccgcgggccccgccaaaact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281099 aacgcctaggagtagggggccgcacggtgggcgccctgccccgcgggccccgccaaaact 53281158
Query: 244 cgcgcctgggcctcccgctgctgctgatgcctgaagaggcgcggctcctggctgagatcg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281159 cgcgcctgggcctcccgctgctgctgatgcctgaagaggcgcggctcctggctgagatcg 53281218
Query: 304 gcgcagtgaccctggtcagcgccccgcgcccggatccccgccaacacagcctgg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281219 gcgcagtgaccctggtcagcgccccgcgcccggatccccgccaacacagcctgg 53281272
Score = 198 bits (100), Expect = 4e-48
Identities = 107/108 (99%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 861 ggcgacccgctccgtttc-acgcccactacatcgctcagtgctgggctcccggggacccc 919
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 53288028 ggcgacccgctccgtttccacgcccactacatcgctcagtgctgggctcccggggacccc 53288087
Query: 920 atccccctccaggacctcgtttctgccggccgcctcggcaccagcgtc 967
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53288088 atccccctccaggacctcgtttctgccggccgcctcggcaccagcgtc 53288135
Score = 180 bits (91), Expect = 9e-43
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 20 cagggggtcgacatggggggtggaggaagcagcgcgtggcgcgcgacgtagggggtggca 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53280050 cagggggtcgacatggggggtggaggaagcagcgcgtggcgcgcgacgtagggggtggca 53280109
Query: 80 ccgccgggacagcgagctggtgtttacgagg 110
|||||||||||||||||||||||||||||||
Sbjct: 53280110 ccgccgggacagcgagctggtgtttacgagg 53280140
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,527,936
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 5
Length of query: 971
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 950
Effective length of database: 2,808,413,156
Effective search space: 2667992498200
Effective search space used: 2667992498200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)