Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013546
(946 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854076.1| PREDICTED: similar to 6-pyruvoyl tetrahydrobiop... 273 2e-73
>ref|XP_854076.1| PREDICTED: similar to 6-pyruvoyl tetrahydrobiopterin synthase
precursor (PTPS) (PTP synthase) [Canis familiaris].
Length = 150
Score = 273 bits (698), Expect = 2e-73
Identities = 132/139 (94%), Positives = 135/139 (97%)
Frame = +2
Query: 101 GPHRRARVSRLASFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPV 280
G RRARVSRL SFSA+HRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPV
Sbjct: 12 GGRRRARVSRLVSFSATHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPV 71
Query: 281 TGMVMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQKYLPAGV 460
TGMVMNLTDLK+YMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQK+LP GV
Sbjct: 72 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQKFLPLGV 131
Query: 461 LYKVKVYETDNNIVVYKGE 517
LYKVKVYETDNNIVVYKGE
Sbjct: 132 LYKVKVYETDNNIVVYKGE 150
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,589,073
Number of extensions: 666006
Number of successful extensions: 2354
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2353
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013546
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013546
(946 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002699300.1| PREDICTED: 6-pyruvoyltetrahydropterin syntha... 286 2e-77
Alignment gi|XP_002703545.1| PREDICTED: 6-pyruvoyltetrahydropterin syntha... 286 2e-77
Alignment gi|NP_001107009.1| 6-pyruvoyl tetrahydrobiopterin synthase [Bos... 280 1e-75
>ref|XP_002699300.1| PREDICTED: 6-pyruvoyltetrahydropterin synthase-like [Bos taurus].
Length = 165
Score = 286 bits (732), Expect = 2e-77
Identities = 142/168 (84%), Positives = 150/168 (89%)
Frame = +2
Query: 92 ADSGPHRRARVSRLASFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEI 271
A GP ARVSRL SFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGE+
Sbjct: 4 AGLGPGWWARVSRLVSFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEV 63
Query: 272 DPVTGMVMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQKYLP 451
DPVTGMVMNLTDLK+Y+EEAIMKPLDHKNLDL VPYFAD+VSTTENVAVYIWENLQK+LP
Sbjct: 64 DPVTGMVMNLTDLKEYIEEAIMKPLDHKNLDLGVPYFADIVSTTENVAVYIWENLQKFLP 123
Query: 452 AGVLYKVKVYETDNNIVVYKGE*LLEINTIERFNYFPYLKTVFIPLDN 595
GVLYKVKVYETDNNIVVYKGE LLEI ++ PYLK +FIPL N
Sbjct: 124 VGVLYKVKVYETDNNIVVYKGEQLLEI------SFHPYLKKIFIPLSN 165
>ref|XP_002703545.1| PREDICTED: 6-pyruvoyltetrahydropterin synthase-like [Bos taurus].
Length = 165
Score = 286 bits (732), Expect = 2e-77
Identities = 142/168 (84%), Positives = 150/168 (89%)
Frame = +2
Query: 92 ADSGPHRRARVSRLASFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEI 271
A GP ARVSRL SFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGE+
Sbjct: 4 AGLGPGWWARVSRLVSFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEV 63
Query: 272 DPVTGMVMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQKYLP 451
DPVTGMVMNLTDLK+Y+EEAIMKPLDHKNLDL VPYFAD+VSTTENVAVYIWENLQK+LP
Sbjct: 64 DPVTGMVMNLTDLKEYIEEAIMKPLDHKNLDLGVPYFADIVSTTENVAVYIWENLQKFLP 123
Query: 452 AGVLYKVKVYETDNNIVVYKGE*LLEINTIERFNYFPYLKTVFIPLDN 595
GVLYKVKVYETDNNIVVYKGE LLEI ++ PYLK +FIPL N
Sbjct: 124 VGVLYKVKVYETDNNIVVYKGEQLLEI------SFHPYLKKIFIPLSN 165
>ref|NP_001107009.1| 6-pyruvoyl tetrahydrobiopterin synthase [Bos taurus].
Length = 145
Score = 280 bits (717), Expect = 1e-75
Identities = 134/142 (94%), Positives = 138/142 (97%)
Frame = +2
Query: 92 ADSGPHRRARVSRLASFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEI 271
A SGP RRARVSRL SFSA+HRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGE+
Sbjct: 4 AGSGPRRRARVSRLVSFSATHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEV 63
Query: 272 DPVTGMVMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQKYLP 451
DPVTGMVMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFAD+VSTTENVAVYIWENLQK+LP
Sbjct: 64 DPVTGMVMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFADIVSTTENVAVYIWENLQKFLP 123
Query: 452 AGVLYKVKVYETDNNIVVYKGE 517
GVLYKVKVYETDNNIVVYKGE
Sbjct: 124 VGVLYKVKVYETDNNIVVYKGE 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,529,794
Number of extensions: 694897
Number of successful extensions: 2241
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2236
Number of HSP's successfully gapped: 3
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013546
(946 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,798,310
Number of extensions: 521915
Number of successful extensions: 1362
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1360
Number of HSP's successfully gapped: 0
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013546
(946 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035350.1| 6-pyruvoyl tetrahydrobiopterin synthase [Mus mu... 257 8e-69
>ref|NP_035350.1| 6-pyruvoyl tetrahydrobiopterin synthase [Mus musculus].
Length = 144
Score = 257 bits (657), Expect = 8e-69
Identities = 123/136 (90%), Positives = 130/136 (95%)
Frame = +2
Query: 110 RRARVSRLASFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPVTGM 289
RRAR+SRL SFSASHRLHS SLS+EENL++FGKCNNPNGHGHNYKVVVTVHGEIDPVTGM
Sbjct: 9 RRARLSRLVSFSASHRLHSPSLSDEENLRVFGKCNNPNGHGHNYKVVVTVHGEIDPVTGM 68
Query: 290 VMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQKYLPAGVLYK 469
VMNLTDLK+YMEEAIMKPLDHKNLDLDVPYFAD VSTTENVAVYIWE+LQK LP G LYK
Sbjct: 69 VMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADAVSTTENVAVYIWESLQKLLPVGALYK 128
Query: 470 VKVYETDNNIVVYKGE 517
VKV+ETDNNIVVYKGE
Sbjct: 129 VKVFETDNNIVVYKGE 144
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,807,281
Number of extensions: 558834
Number of successful extensions: 1760
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1757
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013546
(946 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000308.1| 6-pyruvoyl tetrahydrobiopterin synthase [Homo s... 253 2e-67
>ref|NP_000308.1| 6-pyruvoyl tetrahydrobiopterin synthase [Homo sapiens].
Length = 145
Score = 253 bits (645), Expect = 2e-67
Identities = 123/144 (85%), Positives = 130/144 (90%)
Frame = +2
Query: 86 SDADSGPHRRARVSRLASFSASHRLHSKSLSNEENLKLFGKCNNPNGHGHNYKVVVTVHG 265
S G +A+VSR SFSASHRL+SK LS+EENLKLFGKCNNPNGHGHNYKVVVTVHG
Sbjct: 2 STEGGGRRCQAQVSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVHG 61
Query: 266 EIDPVTGMVMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQKY 445
EIDP TGMVMNL DLKKYMEEAIM+PLDHKNLD+DVPYFADVVSTTENVAVYIW+NLQK
Sbjct: 62 EIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQKV 121
Query: 446 LPAGVLYKVKVYETDNNIVVYKGE 517
LP GVLYKVKVYETDNNIVVYKGE
Sbjct: 122 LPVGVLYKVKVYETDNNIVVYKGE 145
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,972,812
Number of extensions: 648341
Number of successful extensions: 2091
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2084
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013546
(946 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 733 0.0
Sscrofa_Chr11 682 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 733 bits (370), Expect = 0.0
Identities = 385/390 (98%)
Strand = Plus / Plus
Query: 395 agcacaacagaaaatgtagctgtatatatatgggaaaacctccagaaatatcttcctgcg 454
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 44778870 agcacaacagaaaatgtagctgtgtatatatgggaaaacctccagaaataccttcctgcg 44778929
Query: 455 ggagttctttataaagtaaaagtatatgaaactgacaataatattgtagtctataaagga 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44778930 ggagttctttataaagtaaaagtatatgaaactgacaataatattgtagtctataaagga 44778989
Query: 515 gaatagctcttagagattaataccatagaaaggtttaattactttccatatttgaagaca 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44778990 gaatagctcttagagattaataccatagaaaggtttaattactttccatatttgaagaca 44779049
Query: 575 gtctttattcccctggataattgagaagtcatcacatgatggttataccctcgtattata 634
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44779050 atctttattcccctggataattgagaagtcatcacatgatggttataccctcgtattata 44779109
Query: 635 ttatgaagtacctgatttattgaaatcattgtgagtaagaccttttttaaattccagtct 694
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44779110 ttgtgaagtacctgatttattgaaatcattgtgagtaagaccttttttaaattccagtct 44779169
Query: 695 attttaaatccaaatctatgatgtattctgggtgtcatttaaagagtgtattatccataa 754
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 44779170 attttaaatccaaatctatgatgtattctgggtgtcatttaaagagtgtattacccataa 44779229
Query: 755 attacaattgttttagcagaacgttttggt 784
||||||||||||||||||||||||||||||
Sbjct: 44779230 attacaattgttttagcagaacgttttggt 44779259
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 2 gcggagggaggccccgcccattcccccaggcaggcggcggccccggggcaggaggctcgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44771770 gcggagggaggccccgcccattcccccaggcaggcggcggccccggggcaggaggctcgg 44771829
Query: 62 ccttgcctcgcgggcggaatgaggagcgacgctgactcaggcccccaccggcgggcgcga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44771830 ccttgcctcgcgggcggaatgaggagcgacgctgactcaggcccccaccggcgggcgcga 44771889
Query: 122 gtgtcccgcctcgcgtccttcagcgcgtcccatcggctccacag 165
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44771890 gtgtcccgcctcgcgtccttcagcgcgtcccatcggctccacag 44771933
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 164 agcaaatctctcagtaatgaagaaaacttgaaactctttgggaaatgcaacaatccaaat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44773793 agcaaatctctcagtaatgaagaaaacttgaaactctttgggaaatgcaacaatccaaat 44773852
Query: 224 ggccatgggcacaattataaag 245
||||||||||||||||||||||
Sbjct: 44773853 ggccatgggcacaattataaag 44773874
Score = 157 bits (79), Expect = 1e-35
Identities = 92/95 (96%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 850 ttttctttttgatataacataaatggaaaaaatggttataatacagcaaatgaatcttac 909
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 44779325 ttttctttttgatataacataaatggaaaaaatgttcataatacagcaaatgaatcttac 44779384
Query: 910 aaaaaat-aaatacaggtggccacaaagtctgaaa 943
||||||| |||||||||||||||||||||||||||
Sbjct: 44779385 aaaaaataaaatacaggtggccacaaagtctgaaa 44779419
Score = 151 bits (76), Expect = 8e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 321 tggaggaggcaatcatgaagccccttgatcataagaatctggatctggatgtgccatact 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44778603 tggaggaggcaatcatgaagccccttgatcataagaatctggatctggatgtgccatact 44778662
Query: 381 ttgcagatgttgtaag 396
||||||||||||||||
Sbjct: 44778663 ttgcagatgttgtaag 44778678
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 267 agattgatcctgttacaggaatggttatgaatttgactgatctcaaaaagtatatggagg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44775994 agattgatcctgttacaggaatggttatgaatttgactgatctcaaaaagtatatggagg 44776053
>Sscrofa_Chr11
|| Length = 87690581
Score = 682 bits (344), Expect = 0.0
Identities = 554/623 (88%), Gaps = 2/623 (0%)
Strand = Plus / Minus
Query: 161 cacagcaaatctctcagtaatgaagaaaacttgaaactctttgggaaatgcaacaatcca 220
|||||||| | ||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 47385935 cacagcaagtttctgaataatgaagaaaacttgaaactctttgggaaatgcaacaaccca 47385876
Query: 221 aatggccatgggcacaattataaagttgtggtgacagtacatggagagattgatcctgtt 280
|||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct: 47385875 aatggccatgggcacaattataaagttgtggtgatagcacatggagagattgattctgtt 47385816
Query: 281 acaggaatggttatgaatttgactgatctcaaaaagtatatggaggaggcaatcatgaag 340
| ||||||| || |||||| |||||| ||||| ||||||| | | ||||||||||||||
Sbjct: 47385815 ataggaatgattttgaattcgactgacctcaagcagtatattgggaaggcaatcatgaag 47385756
Query: 341 ccccttgatcataagaatctggatctggatgtgccatactttgcagatgttgtaagcaca 400
|| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 47385755 ccacttgatcataagaatctggacatggatgtgctatactttgcagatgttgtaagcatg 47385696
Query: 401 acagaaaatgtagctgtatatatatgggaaaacctccagaaatatcttcctgcgggagtt 460
||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||
Sbjct: 47385695 acagaaaatgtagctgtatatatctgggaaaacctccagaaatttcttcttgtgggagtt 47385636
Query: 461 ctttataaagtaaaagtatatg--aaactgacaataatattgtagtctataaaggagaat 518
|||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 47385635 ctttataaagtacaagtatatggaaaactgacaataatattatagtctataaaggagaat 47385576
Query: 519 agctcttagagattaataccatagaaaggtttaattactttccatatttgaagacagtct 578
|| |||||||||||||||| |||||||| ||||||||||||||||||||||| | | |||
Sbjct: 47385575 agttcttagagattaatactatagaaagatttaattactttccatatttgaaaataatct 47385516
Query: 579 ttattcccctggataattgagaagtcatcacatgatggttataccctcgtattatattat 638
|| || ||||||||| |||||| |||||||||||| ||| |||| | |||||||| |
Sbjct: 47385515 ttgttatcctggataactgagaattcatcacatgatagttgtacctctgcattatattct 47385456
Query: 639 gaagtacctgatttattgaaatcattgtgagtaagaccttttttaaattccagtctattt 698
| | ||||| |||| || |||||||||||||||||| || |||||||||||| |||||||
Sbjct: 47385455 ggaataccttatttttttaaatcattgtgagtaagatctgttttaaattccaatctattt 47385396
Query: 699 taaatccaaatctatgatgtattctgggtgtcatttaaagagtgtattatccataaatta 758
|||| |||||| ||| |||||||||| || |||||||||||| || ||||||||||||||
Sbjct: 47385395 taaaaccaaatttataatgtattctgagtatcatttaaagagggttttatccataaatta 47385336
Query: 759 caattgttttagcagaacgtttt 781
|||||||| |||| || |||||
Sbjct: 47385335 aaattgtttcagcaaaatgtttt 47385313
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,121,126
Number of extensions: 269
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 7
Length of query: 946
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 925
Effective length of database: 2,808,413,156
Effective search space: 2597782169300
Effective search space used: 2597782169300
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)