Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013548
(947 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851201.1| PREDICTED: similar to peroxisomal biogenesis fa... 458 e-129
>ref|XP_851201.1| PREDICTED: similar to peroxisomal biogenesis factor 14 [Canis
familiaris].
Length = 422
Score = 458 bits (1178), Expect = e-129
Identities = 237/308 (76%), Positives = 248/308 (80%)
Frame = +3
Query: 24 QKMASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGL 203
+K ASSEQAE PSQP+STPGSENVVPREPLIATAVKFLQNSRVRQSPLA RRAFLKKKGL
Sbjct: 47 RKRASSEQAEPPSQPSSTPGSENVVPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGL 106
Query: 204 TDEEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAG 383
TDEEID+AFQQSG+AADEP+SLGPATQVVPVQPPHLI QPYSP GSRWRDY ALA+I G
Sbjct: 107 TDEEIDLAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPVGSRWRDYGALAVITTG 166
Query: 384 IAFGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASXXXXXX 563
I FGFHQLYK+YLLPLI GGREDRK LERMEASLSELSGSVAQTVTQLQMTLAS
Sbjct: 167 IVFGFHQLYKRYLLPLITGGREDRKHLERMEASLSELSGSVAQTVTQLQMTLASVQELLI 226
Query: 564 XXXXXXXXXAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKI 743
AHELA AKATTSTNW+LESQN+NELKSEINSLKGLLLNRRQFPPSPSAPKI
Sbjct: 227 QQQQKVQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKI 286
Query: 744 PSWQIXXXXXXXXXXXXXXXXXXXDIXXXXXXXXXXXXXKEGHSPEGSTATYHLLGPQEE 923
PSWQI DI KEGHSPEGSTA YHLLGPQEE
Sbjct: 287 PSWQIPVKSPSPSSPAAANHHSSSDISPVSNESTSSSPVKEGHSPEGSTAAYHLLGPQEE 346
Query: 924 GEGVVDVK 947
G+GV+DVK
Sbjct: 347 GQGVLDVK 354
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,436,909
Number of extensions: 977667
Number of successful extensions: 4934
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4901
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013548
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013548
(947 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073706.1| peroxisomal biogenesis factor 14 [Bos taurus]. 425 e-119
>ref|NP_001073706.1| peroxisomal biogenesis factor 14 [Bos taurus].
Length = 296
Score = 425 bits (1093), Expect = e-119
Identities = 218/243 (89%), Positives = 223/243 (91%)
Frame = +3
Query: 30 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 209
MASSEQAEQPSQP+S PGSENVVPREPLIATAVKFLQNSRVRQSPLA RRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPSQPSSAPGSENVVPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD 60
Query: 210 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA 389
EEID+AFQQSG+AADEP SLGPATQVVPVQPPHLI QPYSPAGSRWRDYSALAIIMAGI
Sbjct: 61 EEIDLAFQQSGTAADEPMSLGPATQVVPVQPPHLISQPYSPAGSRWRDYSALAIIMAGIT 120
Query: 390 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASXXXXXXXX 569
FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLAS
Sbjct: 121 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASVQELLIQQ 180
Query: 570 XXXXXXXAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS 749
AHELATAKATTSTNW+LESQN+NELKSEINSLKGLLLNRRQFPPSPSAPKIPS
Sbjct: 181 QQKVQELAHELATAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS 240
Query: 750 WQI 758
WQI
Sbjct: 241 WQI 243
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,942,648
Number of extensions: 945523
Number of successful extensions: 4864
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4840
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013548
(947 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127609.1| PREDICTED: peroxisomal membrane protein PEX1... 493 e-140
Alignment gi|XP_003127610.1| PREDICTED: peroxisomal membrane protein PEX1... 482 e-136
Alignment gi|XP_003356192.1| PREDICTED: peroxisomal membrane protein PEX1... 386 e-108
>ref|XP_003127609.1| PREDICTED: peroxisomal membrane protein PEX14 isoform 1 [Sus
scrofa].
Length = 374
Score = 493 bits (1268), Expect = e-140
Identities = 259/306 (84%), Positives = 259/306 (84%)
Frame = +3
Query: 30 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 209
MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 60
Query: 210 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA 389
EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA
Sbjct: 61 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA 120
Query: 390 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASXXXXXXXX 569
FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLAS
Sbjct: 121 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASVQELLVQQ 180
Query: 570 XXXXXXXAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS 749
AHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS
Sbjct: 181 QQKVQELAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS 240
Query: 750 WQIXXXXXXXXXXXXXXXXXXXDIXXXXXXXXXXXXXKEGHSPEGSTATYHLLGPQEEGE 929
WQI DI KEGHSPEGSTATYHLLGPQEEGE
Sbjct: 241 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPVKEGHSPEGSTATYHLLGPQEEGE 300
Query: 930 GVVDVK 947
GVVDVK
Sbjct: 301 GVVDVK 306
>ref|XP_003127610.1| PREDICTED: peroxisomal membrane protein PEX14 isoform 2 [Sus
scrofa].
Length = 390
Score = 482 bits (1241), Expect = e-136
Identities = 259/322 (80%), Positives = 259/322 (80%), Gaps = 16/322 (4%)
Frame = +3
Query: 30 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 209
MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 60
Query: 210 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA 389
EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA
Sbjct: 61 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA 120
Query: 390 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQT----------------VT 521
FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQT VT
Sbjct: 121 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTGLETSHEFHQDMRGPRVT 180
Query: 522 QLQMTLASXXXXXXXXXXXXXXXAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLL 701
QLQMTLAS AHELATAKATTSTNWMLESQNVNELKSEINSLKGLLL
Sbjct: 181 QLQMTLASVQELLVQQQQKVQELAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLL 240
Query: 702 NRRQFPPSPSAPKIPSWQIXXXXXXXXXXXXXXXXXXXDIXXXXXXXXXXXXXKEGHSPE 881
NRRQFPPSPSAPKIPSWQI DI KEGHSPE
Sbjct: 241 NRRQFPPSPSAPKIPSWQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPVKEGHSPE 300
Query: 882 GSTATYHLLGPQEEGEGVVDVK 947
GSTATYHLLGPQEEGEGVVDVK
Sbjct: 301 GSTATYHLLGPQEEGEGVVDVK 322
>ref|XP_003356192.1| PREDICTED: peroxisomal membrane protein PEX14 [Sus scrofa].
Length = 331
Score = 386 bits (992), Expect = e-108
Identities = 216/306 (70%), Positives = 216/306 (70%)
Frame = +3
Query: 30 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 209
MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKG
Sbjct: 1 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKG--- 57
Query: 210 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA 389
PAGSRWRDYSALAIIMAGIA
Sbjct: 58 ----------------------------------------PAGSRWRDYSALAIIMAGIA 77
Query: 390 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASXXXXXXXX 569
FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLAS
Sbjct: 78 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASVQELLVQQ 137
Query: 570 XXXXXXXAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS 749
AHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS
Sbjct: 138 QQKVQELAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS 197
Query: 750 WQIXXXXXXXXXXXXXXXXXXXDIXXXXXXXXXXXXXKEGHSPEGSTATYHLLGPQEEGE 929
WQI DI KEGHSPEGSTATYHLLGPQEEGE
Sbjct: 198 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPVKEGHSPEGSTATYHLLGPQEEGE 257
Query: 930 GVVDVK 947
GVVDVK
Sbjct: 258 GVVDVK 263
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,946,745
Number of extensions: 613981
Number of successful extensions: 3185
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3165
Number of HSP's successfully gapped: 4
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013548
(947 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062755.1| peroxisomal membrane protein PEX14 [Mus musculu... 457 e-129
>ref|NP_062755.1| peroxisomal membrane protein PEX14 [Mus musculus].
Length = 376
Score = 457 bits (1175), Expect = e-129
Identities = 236/306 (77%), Positives = 249/306 (81%)
Frame = +3
Query: 30 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 209
MASSEQAEQP+QP+S PGSENVVPREPLIATAVKFLQNSRVRQSPLA RRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPNQPSSPPGSENVVPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD 60
Query: 210 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA 389
EEID+AFQQSG+AADEP+ LGPAT VVPVQPPHL PQPYSP GSRWRDY ALAIIMAGIA
Sbjct: 61 EEIDLAFQQSGTAADEPSPLGPATPVVPVQPPHLTPQPYSPRGSRWRDYGALAIIMAGIA 120
Query: 390 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASXXXXXXXX 569
FGFHQLYK+YLLPLI+GGREDRKQLERM ASLSELSG+VAQTVTQ+Q TLAS
Sbjct: 121 FGFHQLYKRYLLPLILGGREDRKQLERMAASLSELSGTVAQTVTQVQTTLASVQELLRQQ 180
Query: 570 XXXXXXXAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS 749
AHELATAKATTSTNW+LESQN+NELKSEINSLKGLLLNRRQFPPSPSAPKIPS
Sbjct: 181 QQKVQELAHELATAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS 240
Query: 750 WQIXXXXXXXXXXXXXXXXXXXDIXXXXXXXXXXXXXKEGHSPEGSTATYHLLGPQEEGE 929
WQI DI K+ HSPEGSTATYHLLGPQEEGE
Sbjct: 241 WQIPVKSSSPSSPAAVNHHSSSDISPVSNESTSSSPGKDSHSPEGSTATYHLLGPQEEGE 300
Query: 930 GVVDVK 947
GV+DVK
Sbjct: 301 GVLDVK 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,104,310
Number of extensions: 782454
Number of successful extensions: 3855
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3837
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013548
(947 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004556.1| peroxisomal membrane protein PEX14 [Homo sapien... 469 e-132
>ref|NP_004556.1| peroxisomal membrane protein PEX14 [Homo sapiens].
Length = 377
Score = 469 bits (1208), Expect = e-132
Identities = 244/306 (79%), Positives = 252/306 (82%)
Frame = +3
Query: 30 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 209
MASSEQAEQPSQP+STPGSENV+PREPLIATAVKFLQNSRVRQSPLA RRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD 60
Query: 210 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYSPAGSRWRDYSALAIIMAGIA 389
EEID+AFQQSG+AADEP+SLGPATQVVPVQPPHLI QPYSPAGSRWRDY ALAIIMAGIA
Sbjct: 61 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRWRDYGALAIIMAGIA 120
Query: 390 FGFHQLYKKYLLPLIMGGREDRKQLERMEASLSELSGSVAQTVTQLQMTLASXXXXXXXX 569
FGFHQLYKKYLLPLI+GGREDRKQLERMEA LSELSGSVAQTVTQLQ TLAS
Sbjct: 121 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ 180
Query: 570 XXXXXXXAHELATAKATTSTNWMLESQNVNELKSEINSLKGLLLNRRQFPPSPSAPKIPS 749
AHELA AKATTSTNW+LESQN+NELKSEINSLKGLLLNRRQFPPSPSAPKIPS
Sbjct: 181 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS 240
Query: 750 WQIXXXXXXXXXXXXXXXXXXXDIXXXXXXXXXXXXXKEGHSPEGSTATYHLLGPQEEGE 929
WQI DI KEGHSPEGST TYHLLGPQEEGE
Sbjct: 241 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE 300
Query: 930 GVVDVK 947
GVVDVK
Sbjct: 301 GVVDVK 306
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,657,228
Number of extensions: 954115
Number of successful extensions: 4515
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4500
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013548
(947 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 464 e-128
>Sscrofa_Chr06
|| Length = 157765593
Score = 464 bits (234), Expect = e-128
Identities = 240/242 (99%)
Strand = Plus / Plus
Query: 706 ggaggcagttcccaccctccccgtcggccccgaagatcccctcctggcagatcccggtca 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64803927 ggaggcagttcccaccctccccgtcggccccgaagatcccctcctggcagatcccggtca 64803986
Query: 766 agtcgccatccccctccagccccgcggccgtgaaccatcacagcagcagtgacatctcgc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64803987 agtcgccatccccctccagccccgcggccgtgaaccatcacagcagcagtgacatctcgc 64804046
Query: 826 ctgtcagcaatgagtccacgtcgtcctctcccgtgaaggagggccacagccccgagggct 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64804047 ctgtcagcaatgagtccacgtcgtcctctcccgtgaaggagggccacagccccgagggct 64804106
Query: 886 ccacggccacctaccacttgctgggcccccaagaagagggcgagggggtggtggatgtca 945
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 64804107 ccacggccacctaccacttgctgggcccccaggaggagggcgagggggtggtggatgtca 64804166
Query: 946 ag 947
||
Sbjct: 64804167 ag 64804168
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 197 agggctgacagatgaagagattgatgtggctttccagcagtcaggctcggctgccgatga 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778346 agggctgacagatgaagagattgatgtggctttccagcagtcaggctcggctgccgatga 64778405
Query: 257 gcctgcgtccttgggcccagccacacaggtggttcctgtccagccccctcacctcattcc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778406 gcctgcgtccttgggcccagccacacaggtggttcctgtccagccccctcacctcattcc 64778465
Query: 317 gcagccatacag 328
||||||||||||
Sbjct: 64778466 gcagccatacag 64778477
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 412 agaaatacctgctccccctcatcatgggcggccgggaggacaggaagcaactggagagga 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64797558 agaaatacctgctccccctcatcatgggcggccgggaggacaggaagcaactggagagga 64797617
Query: 472 tggaggcgagcctctcggagctgagtggcagcgtggcccagacag 516
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64797618 tggaggcgagcctctcggagctgagtggcagcgtggcccagacag 64797662
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 514 cagtgactcagttacagatgacgttagcctcggtccaggagctgctagttcagcagcagc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64798841 cagtgactcagttacagatgacgttagcctcggtccaggagctgctagttcagcagcagc 64798900
Query: 574 agaaagtccaggagctcgcccacgaactggccacagccaagg 615
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64798901 agaaagtccaggagctcgcccacgaactggccacagccaagg 64798942
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 613 aggccaccacgtccaccaactggatgctggagtcccagaacgtcaatgagctcaagtcgg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64802025 aggccaccacgtccaccaactggatgctggagtcccagaacgtcaatgagctcaagtcgg 64802084
Query: 673 aaattaactccttgaaagggcttcttttaaatcgg 707
|||||||||||||||||||||||||||||||||||
Sbjct: 64802085 aaattaactccttgaaagggcttcttttaaatcgg 64802119
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 113 gattgccacagcagtgaagtttctacagaattctcgggtccgccagagcccacttgcagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64724020 gattgccacagcagtgaagtttctacagaattctcgggtccgccagagcccacttgcagc 64724079
Query: 173 caggagagcattccttaagaagaaagg 199
|||||||||||||||||||||||||||
Sbjct: 64724080 caggagagcattccttaagaagaaagg 64724106
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 328 gccccgcgggctcccggtggagagattacagcgccttggccatcatcatggcagggattg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64793814 gccccgcgggctcccggtggagagattacagcgccttggccatcatcatggcagggattg 64793873
Query: 388 ccttcggctttcaccagctctacaag 413
||||||||||||||||||||||||||
Sbjct: 64793874 ccttcggctttcaccagctctacaag 64793899
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 gcggcgatagattagtcaggcctcaaaagatggcgtcctcggagcaggcagagcaaccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64670732 gcggcgatagattagtcaggcctcaaaagatggcgtcctcggagcaggcagagcaaccga 64670791
Query: 61 gccag 65
|||||
Sbjct: 64670792 gccag 64670796
Score = 101 bits (51), Expect = 7e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 63 cagccaaactctactccaggaagtgaaaatgtggtacctcgagagccactg 113
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64688743 cagccaaactctactccaggaagtgaaaatgtggtacctcgagagccactg 64688793
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,574,542
Number of extensions: 154
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 9
Length of query: 947
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 926
Effective length of database: 2,808,413,156
Effective search space: 2600590582456
Effective search space used: 2600590582456
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)