Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013554
(1219 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854423.1| PREDICTED: similar to CG9351-PA, isoform A isof... 176 1e-61
Alignment gi|XP_531833.2| PREDICTED: similar to CG9351-PA, isoform A [Can... 172 4e-59
Alignment gi|XP_548911.1| PREDICTED: similar to CG9351-PA, isoform A [Can... 127 5e-41
Alignment gi|XP_868463.1| PREDICTED: similar to CG9351-PA, isoform A isof... 138 1e-32
>ref|XP_854423.1| PREDICTED: similar to CG9351-PA, isoform A isoform 1 [Canis
familiaris].
Length = 820
Score = 176 bits (447), Expect(2) = 1e-61
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 79.7 bits (195), Expect(2) = 1e-61
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSVDITQDLV+ESEEERFD
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD 123
>ref|XP_531833.2| PREDICTED: similar to CG9351-PA, isoform A [Canis familiaris].
Length = 1069
Score = 172 bits (435), Expect(2) = 4e-59
Identities = 85/88 (96%), Positives = 86/88 (97%)
Frame = +2
Query: 848 TMTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPN 1027
TM+DTRRRVKVYTLNEDRQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPN
Sbjct: 249 TMSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPN 308
Query: 1028 TAYQKQQDTLIVWSEAENYDLALSFQEK 1111
TAYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 309 TAYQKQQDTLIVWSEAENYDLALSFQEK 336
Score = 75.9 bits (185), Expect(2) = 4e-59
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 336 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 372
>ref|XP_548911.1| PREDICTED: similar to CG9351-PA, isoform A [Canis familiaris].
Length = 1123
Score = 127 bits (319), Expect(2) = 5e-41
Identities = 62/106 (58%), Positives = 81/106 (76%)
Frame = +2
Query: 791 PGPPFRATPAGPLLRPPRGTMTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSL 970
P P T G + P TM D R V +Y+LN+D++W++ GTGH+SS YVERL+G+ L
Sbjct: 323 PAVPHAETRVGD--KRPEITMADKRHHVTLYSLNQDQEWEELGTGHISSTYVERLQGVFL 380
Query: 971 LVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQE 1108
LV+++S GSL+LESKIN NT YQKQQ+TLIVWSEAEN+ +ALSFQ+
Sbjct: 381 LVQSDSHGSLILESKINSNTPYQKQQETLIVWSEAENHGMALSFQD 426
Score = 60.1 bits (144), Expect(2) = 5e-41
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1
Query: 1114 GCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
GC +IWE IC+VQGKDPSV+ITQDL+ ESE+E+ D
Sbjct: 429 GCRQIWEDICRVQGKDPSVEITQDLLEESEDEQLD 463
>ref|XP_868463.1| PREDICTED: similar to CG9351-PA, isoform A isoform 3 [Canis
familiaris].
Length = 594
Score = 138 bits (347), Expect = 1e-32
Identities = 71/104 (68%), Positives = 85/104 (81%), Gaps = 2/104 (1%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSE--AENYDLALSFQEKPDVMKFGRKYVRFKE 1156
AYQKQQ+ ++ A+ D A +++ +++ F +++ F +
Sbjct: 61 AYQKQQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQ 104
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,088,924
Number of extensions: 1197123
Number of successful extensions: 10696
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10423
Number of HSP's successfully gapped: 7
Length of query: 406
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 301
Effective length of database: 15,374,224
Effective search space: 4627641424
Effective search space used: 4627641424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013554
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013554
(1219 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192449.1| SMEK homolog 1, suppressor of mek1 [Bos taur... 176 1e-61
Alignment gi|XP_002696860.1| PREDICTED: SMEK homolog 1, suppressor of mek... 176 1e-61
Alignment gi|XP_002700812.1| PREDICTED: SMEK homolog 2, suppressor of mek... 169 2e-58
Alignment gi|NP_001178079.1| serine/threonine-protein phosphatase 4 regul... 169 2e-58
Alignment gi|XP_002691375.1| PREDICTED: SMEK homolog 2, suppressor of mek... 166 3e-57
Alignment gi|XP_002691376.1| PREDICTED: SMEK homolog 2, suppressor of mek... 166 3e-57
Alignment gi|XP_002700325.1| PREDICTED: hypothetical protein [Bos taurus]. 107 4e-33
Alignment gi|XP_583892.4| PREDICTED: hypothetical protein [Bos taurus]. 107 4e-33
Alignment gi|XP_001788895.2| PREDICTED: KIAA1387 protein-like, partial [B... 76 1e-21
>ref|NP_001192449.1| SMEK homolog 1, suppressor of mek1 [Bos taurus].
Length = 820
Score = 176 bits (447), Expect(2) = 1e-61
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 79.7 bits (195), Expect(2) = 1e-61
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSVDITQDLV+ESEEERFD
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD 123
>ref|XP_002696860.1| PREDICTED: SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Bos
taurus].
Length = 820
Score = 176 bits (447), Expect(2) = 1e-61
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 79.7 bits (195), Expect(2) = 1e-61
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSVDITQDLV+ESEEERFD
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD 123
>ref|XP_002700812.1| PREDICTED: SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Bos
taurus].
Length = 820
Score = 169 bits (428), Expect(2) = 2e-58
Identities = 84/87 (96%), Positives = 85/87 (97%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M+DTRRRVKVYTLNEDRQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEDRQWDDRGTGHVSSIYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 75.9 bits (185), Expect(2) = 2e-58
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 123
>ref|NP_001178079.1| serine/threonine-protein phosphatase 4 regulatory subunit 3B [Bos
taurus].
Length = 767
Score = 169 bits (428), Expect(2) = 2e-58
Identities = 84/87 (96%), Positives = 85/87 (97%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M+DTRRRVKVYTLNEDRQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEDRQWDDRGTGHVSSIYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 75.9 bits (185), Expect(2) = 2e-58
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 123
>ref|XP_002691375.1| PREDICTED: SMEK homolog 2, suppressor of mek1 (Dictyostelium) isoform
1 [Bos taurus].
Length = 820
Score = 166 bits (419), Expect(2) = 3e-57
Identities = 83/87 (95%), Positives = 84/87 (96%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M+DTRRRVKVYTLNE RQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEVRQWDDRGTGHVSSIYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 75.9 bits (185), Expect(2) = 3e-57
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 123
>ref|XP_002691376.1| PREDICTED: SMEK homolog 2, suppressor of mek1 (Dictyostelium) isoform
2 [Bos taurus].
Length = 767
Score = 166 bits (419), Expect(2) = 3e-57
Identities = 83/87 (95%), Positives = 84/87 (96%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M+DTRRRVKVYTLNE RQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEVRQWDDRGTGHVSSIYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 75.9 bits (185), Expect(2) = 3e-57
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 123
>ref|XP_002700325.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 719
Score = 107 bits (267), Expect(2) = 4e-33
Identities = 51/86 (59%), Positives = 69/86 (80%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M D + VKVY LN+D+QW+ G GHVS+ YVERL+G+ LLVR+E +G +LESKI+P+T
Sbjct: 1 MADEQSIVKVYFLNDDQQWEILGKGHVSAVYVERLQGICLLVRSEPNGIQILESKIDPDT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQE 1108
YQ++Q TLIVWSEAEN+ +A+SF +
Sbjct: 61 PYQRRQGTLIVWSEAENHGMAMSFPD 86
Score = 53.5 bits (127), Expect(2) = 4e-33
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1
Query: 1111 AGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
A C EIW+ ICQVQGKDPS DIT D + ESE+E D
Sbjct: 88 ASCYEIWKDICQVQGKDPSTDITHDPLVESEDETLD 123
>ref|XP_583892.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 719
Score = 107 bits (267), Expect(2) = 4e-33
Identities = 51/86 (59%), Positives = 69/86 (80%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M D + VKVY LN+D+QW+ G GHVS+ YVERL+G+ LLVR+E +G +LESKI+P+T
Sbjct: 1 MADEQSIVKVYFLNDDQQWEILGKGHVSAVYVERLQGICLLVRSEPNGIQILESKIDPDT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQE 1108
YQ++Q TLIVWSEAEN+ +A+SF +
Sbjct: 61 PYQRRQGTLIVWSEAENHGMAMSFPD 86
Score = 53.5 bits (127), Expect(2) = 4e-33
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1
Query: 1111 AGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
A C EIW+ ICQVQGKDPS DIT D + ESE+E D
Sbjct: 88 ASCYEIWKDICQVQGKDPSTDITHDPLVESEDETLD 123
>ref|XP_001788895.2| PREDICTED: KIAA1387 protein-like, partial [Bos taurus].
Length = 353
Score = 75.9 bits (185), Expect(2) = 1e-21
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 63 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 99
Score = 46.6 bits (109), Expect(2) = 1e-21
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +2
Query: 1046 QDTLIVWSEAENYDLALSFQEK 1111
+DTLIVWSEAENYDLALSFQEK
Sbjct: 42 KDTLIVWSEAENYDLALSFQEK 63
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,533,644
Number of extensions: 1199597
Number of successful extensions: 10280
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9933
Number of HSP's successfully gapped: 18
Length of query: 406
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,207,134
Effective search space: 4276347334
Effective search space used: 4276347334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013554
(1219 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928870.1| PREDICTED: serine/threonine-protein phosphat... 176 7e-62
Alignment gi|XP_003135038.1| PREDICTED: serine/threonine-protein phosphat... 132 2e-43
Alignment gi|XP_003354863.1| PREDICTED: serine/threonine-protein phosphat... 76 2e-22
Alignment gi|XP_003125173.2| PREDICTED: serine/threonine-protein phosphat... 76 2e-22
>ref|XP_001928870.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit
3A isoform 1 [Sus scrofa].
Length = 820
Score = 176 bits (447), Expect(2) = 7e-62
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 79.7 bits (195), Expect(2) = 7e-62
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSVDITQDLV+ESEEERFD
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD 123
>ref|XP_003135038.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit
3B-like [Sus scrofa].
Length = 730
Score = 132 bits (332), Expect(2) = 2e-43
Identities = 62/86 (72%), Positives = 75/86 (87%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M D RR VKVY LN+++QWDD GTGHVSS YVER +GMSLLV +ES+G+L+LESKINPNT
Sbjct: 1 MADKRRCVKVYALNDNKQWDDLGTGHVSSTYVERFQGMSLLVHSESNGTLILESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQE 1108
YQKQQ TLIVWSEA+N+ +A+SFQ+
Sbjct: 61 PYQKQQGTLIVWSEAQNHGMAISFQD 86
Score = 62.0 bits (149), Expect(2) = 2e-43
Identities = 27/36 (75%), Positives = 33/36 (91%)
Frame = +1
Query: 1111 AGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
A C EIW+ ICQVQGKDPSV+ITQDL++ESEEE+F+
Sbjct: 88 ACCHEIWKTICQVQGKDPSVEITQDLLDESEEEQFE 123
>ref|XP_003354863.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit
3B-like [Sus scrofa].
Length = 978
Score = 75.9 bits (185), Expect(2) = 2e-22
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 315 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 351
Score = 48.5 bits (114), Expect(2) = 2e-22
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 1043 QQDTLIVWSEAENYDLALSFQEK 1111
+QDTLIVWSEAENYDLALSFQEK
Sbjct: 293 KQDTLIVWSEAENYDLALSFQEK 315
>ref|XP_003125173.2| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit
3B-like [Sus scrofa].
Length = 570
Score = 75.9 bits (185), Expect(2) = 2e-22
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 40 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 76
Score = 48.5 bits (114), Expect(2) = 2e-22
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 1043 QQDTLIVWSEAENYDLALSFQEK 1111
+QDTLIVWSEAENYDLALSFQEK
Sbjct: 18 KQDTLIVWSEAENYDLALSFQEK 40
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,652,727
Number of extensions: 842608
Number of successful extensions: 6750
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6531
Number of HSP's successfully gapped: 8
Length of query: 406
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,829,335
Effective search space: 2692947175
Effective search space used: 2692947175
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013554
(1219 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153686.1| serine/threonine-protein phosphatase 4 regul... 176 1e-61
Alignment gi|NP_997594.1| serine/threonine-protein phosphatase 4 regulato... 176 1e-61
Alignment gi|NP_598795.2| serine/threonine-protein phosphatase 4 regulato... 170 1e-58
Alignment gi|NP_001078980.1| SMEK homolog 3, putative [Mus musculus]. 99 3e-29
Alignment gi|NP_001029052.2| putative SMEK homolog 3 [Mus musculus]. 98 6e-29
Alignment gi|XP_111973.7| PREDICTED: putative SMEK homolog 3-like [Mus mu... 92 3e-26
Alignment gi|XP_912462.2| PREDICTED: putative SMEK homolog 3-like [Mus mu... 92 3e-26
>ref|NP_001153686.1| serine/threonine-protein phosphatase 4 regulatory subunit 3A isoform
2 [Mus musculus].
Length = 833
Score = 176 bits (447), Expect(2) = 1e-61
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 79.7 bits (195), Expect(2) = 1e-61
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSVDITQDLV+ESEEERFD
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD 123
>ref|NP_997594.1| serine/threonine-protein phosphatase 4 regulatory subunit 3A isoform
1 [Mus musculus].
Length = 820
Score = 176 bits (447), Expect(2) = 1e-61
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 79.7 bits (195), Expect(2) = 1e-61
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSVDITQDLV+ESEEERFD
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD 123
>ref|NP_598795.2| serine/threonine-protein phosphatase 4 regulatory subunit 3B [Mus
musculus].
Length = 820
Score = 170 bits (430), Expect(2) = 1e-58
Identities = 84/87 (96%), Positives = 85/87 (97%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M+DTRRRVKVYTLNEDRQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 75.9 bits (185), Expect(2) = 1e-58
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 123
>ref|NP_001078980.1| SMEK homolog 3, putative [Mus musculus].
Length = 785
Score = 99.0 bits (245), Expect(2) = 3e-29
Identities = 43/86 (50%), Positives = 62/86 (72%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M D VK+Y + ED QW G G +SS Y+ERL+G+ L+V++ESDGSL++E KI+PN
Sbjct: 1 MDDKLHSVKIYVMVEDEQWKGIGAGQISSKYIERLQGVCLIVQSESDGSLIMECKIHPNV 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQE 1108
Y KQ+ +I+WSE +N+ +A+ FQE
Sbjct: 61 PYHKQRGEIIIWSETKNHGMAIHFQE 86
Score = 48.9 bits (115), Expect(2) = 3e-29
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +1
Query: 1114 GCDEIWEKICQVQGKDPSVDITQDLVN 1194
GC EIWE ICQVQGKDP+V+IT++L +
Sbjct: 89 GCQEIWEDICQVQGKDPNVEITEELTD 115
>ref|NP_001029052.2| putative SMEK homolog 3 [Mus musculus].
Length = 813
Score = 98.2 bits (243), Expect(2) = 6e-29
Identities = 45/82 (54%), Positives = 62/82 (75%)
Frame = +2
Query: 872 VKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNTAYQKQQD 1051
VKVY + ED+QW + GTG +SS Y E+L+G+ LLV + SDGS ++E KI+PN YQKQQ
Sbjct: 20 VKVYVMMEDKQWKNVGTGQISSKYSEQLQGVCLLVHSLSDGSPIMECKIHPNVPYQKQQG 79
Query: 1052 TLIVWSEAENYDLALSFQEKPD 1117
+I+WSEA+N+ +A+ FQE D
Sbjct: 80 KIIIWSEAKNHGMAIHFQEPND 101
Score = 48.5 bits (114), Expect(2) = 6e-29
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1
Query: 1117 CDEIWEKICQVQGKDPSVDITQDLVNESE 1203
C EIWE ICQ+QGKDP V+ITQ+L ++ E
Sbjct: 102 CQEIWEDICQIQGKDPHVEITQELTDDLE 130
>ref|XP_111973.7| PREDICTED: putative SMEK homolog 3-like [Mus musculus].
Length = 799
Score = 92.4 bits (228), Expect(2) = 3e-26
Identities = 43/86 (50%), Positives = 62/86 (72%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M + +VKVY + ED+QW D GTG +S+ Y++ L+GM LLV +ESD SL++E KI PN
Sbjct: 1 MDNKLHKVKVYVMVEDKQWKDLGTGQISTKYIDGLQGMCLLVHSESDDSLIMECKIYPNV 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQE 1108
Y+KQ+ +IV SE +++ LA+ FQE
Sbjct: 61 PYKKQEGDIIVLSEGKDHGLAIHFQE 86
Score = 45.1 bits (105), Expect(2) = 3e-26
Identities = 15/30 (50%), Positives = 25/30 (83%)
Frame = +1
Query: 1114 GCDEIWEKICQVQGKDPSVDITQDLVNESE 1203
GC +IWE IC+VQGKDP++++ Q++ ++ E
Sbjct: 89 GCQQIWEDICKVQGKDPNIELIQEITDDLE 118
>ref|XP_912462.2| PREDICTED: putative SMEK homolog 3-like [Mus musculus].
Length = 799
Score = 92.4 bits (228), Expect(2) = 3e-26
Identities = 43/86 (50%), Positives = 62/86 (72%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M + +VKVY + ED+QW D GTG +S+ Y++ L+GM LLV +ESD SL++E KI PN
Sbjct: 1 MDNKLHKVKVYVMVEDKQWKDLGTGQISTKYIDGLQGMCLLVHSESDDSLIMECKIYPNV 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQE 1108
Y+KQ+ +IV SE +++ LA+ FQE
Sbjct: 61 PYKKQEGDIIVLSEGKDHGLAIHFQE 86
Score = 45.1 bits (105), Expect(2) = 3e-26
Identities = 15/30 (50%), Positives = 25/30 (83%)
Frame = +1
Query: 1114 GCDEIWEKICQVQGKDPSVDITQDLVNESE 1203
GC +IWE IC+VQGKDP++++ Q++ ++ E
Sbjct: 89 GCQQIWEDICKVQGKDPNIELIQEITDDLE 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,074,848
Number of extensions: 922024
Number of successful extensions: 7126
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6906
Number of HSP's successfully gapped: 14
Length of query: 406
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 302
Effective length of database: 12,493,815
Effective search space: 3773132130
Effective search space used: 3773132130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013554
(1219 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115949.3| serine/threonine-protein phosphatase 4 regulato... 176 1e-61
Alignment gi|NP_001116436.1| serine/threonine-protein phosphatase 4 regul... 170 2e-58
Alignment gi|NP_065196.1| serine/threonine-protein phosphatase 4 regulato... 170 2e-58
>ref|NP_115949.3| serine/threonine-protein phosphatase 4 regulatory subunit 3A [Homo
sapiens].
Length = 820
Score = 176 bits (447), Expect(2) = 1e-61
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 79.7 bits (195), Expect(2) = 1e-61
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSVDITQDLV+ESEEERFD
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD 123
>ref|NP_001116436.1| serine/threonine-protein phosphatase 4 regulatory subunit 3B isoform
1 [Homo sapiens].
Length = 849
Score = 170 bits (430), Expect(2) = 2e-58
Identities = 84/87 (96%), Positives = 85/87 (97%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M+DTRRRVKVYTLNEDRQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 75.9 bits (185), Expect(2) = 2e-58
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 123
>ref|NP_065196.1| serine/threonine-protein phosphatase 4 regulatory subunit 3B isoform
2 [Homo sapiens].
Length = 764
Score = 170 bits (430), Expect(2) = 2e-58
Identities = 84/87 (96%), Positives = 85/87 (97%)
Frame = +2
Query: 851 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 1030
M+DTRRRVKVYTLNEDRQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 1031 AYQKQQDTLIVWSEAENYDLALSFQEK 1111
AYQKQQDTLIVWSEAENYDLALSFQEK
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEK 87
Score = 75.9 bits (185), Expect(2) = 2e-58
Identities = 32/37 (86%), Positives = 37/37 (100%)
Frame = +1
Query: 1108 KAGCDEIWEKICQVQGKDPSVDITQDLVNESEEERFD 1218
KAGCDEIWEKICQVQGKDPSV++TQDL++ESEEERF+
Sbjct: 87 KAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFE 123
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,880,749
Number of extensions: 1138441
Number of successful extensions: 9247
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8978
Number of HSP's successfully gapped: 6
Length of query: 406
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,835,944
Effective search space: 4465619144
Effective search space used: 4465619144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013554
(1219 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 906 0.0
Sscrofa_Chr03 64 2e-07
>Sscrofa_Chr07
|| Length = 134764511
Score = 906 bits (457), Expect = 0.0
Identities = 457/457 (100%)
Strand = Plus / Minus
Query: 1 aggaagtcccgggccgtcaccggcgcgaccagcgttccgcctcctccgctccctgcgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700888 aggaagtcccgggccgtcaccggcgcgaccagcgttccgcctcctccgctccctgcgctc 119700829
Query: 61 tcgccacctcggcagctcggcgccagcctcccgcctccgtccgaggcctccgctgctgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700828 tcgccacctcggcagctcggcgccagcctcccgcctccgtccgaggcctccgctgctgcg 119700769
Query: 121 aggctcccggcttcgctcctgtctctttaaatggtggggccaacgggccgcccctgcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700768 aggctcccggcttcgctcctgtctctttaaatggtggggccaacgggccgcccctgcagc 119700709
Query: 181 tgctgcctgggtggccccgcgcgccgctattgaggaacgaaccaagatggcggcggcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700708 tgctgcctgggtggccccgcgcgccgctattgaggaacgaaccaagatggcggcggcttt 119700649
Query: 241 ggctctgtgaggaagacggaagaggcggcggcagcggcggagggacagggacccccagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700648 ggctctgtgaggaagacggaagaggcggcggcagcggcggagggacagggacccccagga 119700589
Query: 301 gccaggagcgctcctgctcctgggcgctctcggagtcttccgcgcactggtagcagttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700588 gccaggagcgctcctgctcctgggcgctctcggagtcttccgcgcactggtagcagttgc 119700529
Query: 361 agcaggagcaggcgctcgtcggcttcggacatttgaaactggagcggagcgcagccccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700528 agcaggagcaggcgctcgtcggcttcggacatttgaaactggagcggagcgcagccccag 119700469
Query: 421 ctgcggtggcaggaccaggtatcaggaaggaaaacat 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 119700468 ctgcggtggcaggaccaggtatcaggaaggaaaacat 119700432
Score = 525 bits (265), Expect = e-146
Identities = 268/269 (99%)
Strand = Plus / Minus
Query: 726 agaggcggcagtgaggccggggagccctcggcttgcgggcgtcctcctcactcggctccc 785
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700163 agaggcggcagtgaggccgaggagccctcggcttgcgggcgtcctcctcactcggctccc 119700104
Query: 786 gcctccccggaccccctttccgggcgactccggcggggcctttgctccggcccccgcgcg 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700103 gcctccccggaccccctttccgggcgactccggcggggcctttgctccggcccccgcgcg 119700044
Query: 846 gcacgatgaccgacactcggcggcgggtgaaggtttacacgctcaacgaggaccggcagt 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700043 gcacgatgaccgacactcggcggcgggtgaaggtttacacgctcaacgaggaccggcagt 119699984
Query: 906 gggacgaccggggcaccgggcatgtgtcgtcgggctacgtggagcggctgaaaggcatgt 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119699983 gggacgaccggggcaccgggcatgtgtcgtcgggctacgtggagcggctgaaaggcatgt 119699924
Query: 966 ccctgcttgtcagggccgagagcgacggt 994
|||||||||||||||||||||||||||||
Sbjct: 119699923 ccctgcttgtcagggccgagagcgacggt 119699895
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 535 agtgaccggcgccccgagttcctaccgcggcggcacaggaggctgcgaagcgctgcgcgc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700354 agtgaccggcgccccgagttcctaccgcggcggcacaggaggctgcgaagcgctgcgcgc 119700295
Query: 595 ccccctcggggtggctgggctcgccgggcccggacaatagcgccgaggagcgggaggcga 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119700294 ccccctcggggtggctgggctcgccgggcccggacaatagcgccgaggagcgggaggcga 119700235
Query: 655 ggcaaggcgggggcccagagct 676
||||||||||||||||||||||
Sbjct: 119700234 ggcaaggcgggggcccagagct 119700213
Score = 180 bits (91), Expect = 1e-42
Identities = 101/103 (98%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 1047 aggacactttgattgtgtggtctgaagcagaaaattatgacttggcccttagctttcaag 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119686810 aggacactttgattgtgtggtctgaagcagaaaattatgacttggcccttagctttcaag 119686751
Query: 1107 -aaaagccggatgtgatgaaatttgggagaaaatatgtcaggt 1148
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 119686750 aaaaagctggatgtgatgaaatttgggagaaaatatgtcaggt 119686708
Score = 141 bits (71), Expect = 1e-30
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 1145 aggttcaaggaaaggacccgtcagtggacatcactcaggaccttgtaaatgagtctgaag 1204
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 119682658 aggttcaaggaaaggacccgtcagtggacatcactcaggaccttgtagatgagtctgaag 119682599
Query: 1205 aggaacgttttgatg 1219
|||||||||||||||
Sbjct: 119682598 aggaacgttttgatg 119682584
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 992 ggttctctacttttagagtccaaaataaatcctaatactgcataccagaaacaacagg 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119690021 ggttctctacttttagagtccaaaataaatcctaatactgcataccagaaacaacagg 119689964
>Sscrofa_Chr03
|| Length = 144787322
Score = 63.9 bits (32), Expect = 2e-07
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 864 ggcggcgggtgaaggtttacacgctcaacgaggaccggcagtgggacgaccggggcaccg 923
||||||| |||||||| || || || ||||| |||||||| ||||||||||| |||||||
Sbjct: 90436148 ggcggcgagtgaaggtctataccctgaacgaagaccggcaatgggacgaccgaggcaccg 90436207
Query: 924 ggca 927
||||
Sbjct: 90436208 ggca 90436211
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,470,417
Number of extensions: 190
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 7
Length of query: 1219
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1198
Effective length of database: 2,808,413,156
Effective search space: 3364478960888
Effective search space used: 3364478960888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)