Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013557
(1019 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002688006.1| PREDICTED: malonyl CoA:ACP acyltransferase (... 456 e-134
Alignment gi|XP_584864.2| PREDICTED: mitochondrial malonyltransferase iso... 456 e-134
>ref|XP_002688006.1| PREDICTED: malonyl CoA:ACP acyltransferase (mitochondrial) [Bos
taurus].
Length = 387
Score = 456 bits (1174), Expect(2) = e-134
Identities = 233/274 (85%), Positives = 245/274 (89%), Gaps = 3/274 (1%)
Frame = +3
Query: 135 RSTSNFPLPPPGAVDVAELLRDAAA---GEEGPRVAAARRLPGQCSVLLFPGQGSQVVGM 305
R +SN P PPP AVDVA LLRDA A G + + AA RR PGQCSVLLFPGQGSQVVGM
Sbjct: 20 RGSSNCPRPPPAAVDVAALLRDATAADGGSQDAQAAAGRREPGQCSVLLFPGQGSQVVGM 79
Query: 306 GRGLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHH 485
GRGLLRYPRVRELY AARRVLGYDLLELSL GPQE LDRTVHCQPAVFVASLAAVEKLHH
Sbjct: 80 GRGLLRYPRVRELYDAARRVLGYDLLELSLRGPQEALDRTVHCQPAVFVASLAAVEKLHH 139
Query: 486 LQPAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVL 665
LQPAVIENCVAAAGFSVGEFAALVFAGAMEF EGLYAVKIRAEAMQEASEAVPSGMLSVL
Sbjct: 140 LQPAVIENCVAAAGFSVGEFAALVFAGAMEFSEGLYAVKIRAEAMQEASEAVPSGMLSVL 199
Query: 666 GQPQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHF 845
GQ QSKFTVAC EA+EHC+T GIENPVC V+N+LFPDCRVISGHLEAL +L+KNS KYHF
Sbjct: 200 GQRQSKFTVACLEAQEHCKTRGIENPVCVVSNYLFPDCRVISGHLEALQFLQKNSSKYHF 259
Query: 846 RRTKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 947
RRTKM+PVSG FHTRLMEPA+EPL VLK ID+K
Sbjct: 260 RRTKMLPVSGGFHTRLMEPAVEPLVQVLKAIDVK 293
Score = 42.7 bits (99), Expect(2) = e-134
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +2
Query: 944 QKPLVSVHFHVTGNKYMHPKHFRQL 1018
+KPLVSVH +V GN+YMHPKH ++L
Sbjct: 293 KKPLVSVHSNVDGNRYMHPKHIQKL 317
>ref|XP_584864.2| PREDICTED: mitochondrial malonyltransferase isoform 1 [Bos taurus].
Length = 387
Score = 456 bits (1174), Expect(2) = e-134
Identities = 233/274 (85%), Positives = 245/274 (89%), Gaps = 3/274 (1%)
Frame = +3
Query: 135 RSTSNFPLPPPGAVDVAELLRDAAA---GEEGPRVAAARRLPGQCSVLLFPGQGSQVVGM 305
R +SN P PPP AVDVA LLRDA A G + + AA RR PGQCSVLLFPGQGSQVVGM
Sbjct: 20 RGSSNCPRPPPAAVDVAALLRDATAADGGSQDAQAAAGRREPGQCSVLLFPGQGSQVVGM 79
Query: 306 GRGLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHH 485
GRGLLRYPRVRELY AARRVLGYDLLELSL GPQE LDRTVHCQPAVFVASLAAVEKLHH
Sbjct: 80 GRGLLRYPRVRELYDAARRVLGYDLLELSLRGPQEALDRTVHCQPAVFVASLAAVEKLHH 139
Query: 486 LQPAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVL 665
LQPAVIENCVAAAGFSVGEFAALVFAGAMEF EGLYAVKIRAEAMQEASEAVPSGMLSVL
Sbjct: 140 LQPAVIENCVAAAGFSVGEFAALVFAGAMEFSEGLYAVKIRAEAMQEASEAVPSGMLSVL 199
Query: 666 GQPQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHF 845
GQ QSKFTVAC EA+EHC+T GIENPVC V+N+LFPDCRVISGHLEAL +L+KNS KYHF
Sbjct: 200 GQRQSKFTVACLEAQEHCKTRGIENPVCVVSNYLFPDCRVISGHLEALQFLQKNSSKYHF 259
Query: 846 RRTKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 947
RRTKM+PVSG FHTRLMEPA+EPL VLK ID+K
Sbjct: 260 RRTKMLPVSGGFHTRLMEPAVEPLVQVLKAIDVK 293
Score = 42.7 bits (99), Expect(2) = e-134
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +2
Query: 944 QKPLVSVHFHVTGNKYMHPKHFRQL 1018
+KPLVSVH +V GN+YMHPKH ++L
Sbjct: 293 KKPLVSVHSNVDGNRYMHPKHIQKL 317
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,670,204
Number of extensions: 1008036
Number of successful extensions: 5193
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5182
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013557
(1019 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851896.1| PREDICTED: similar to Malonyl CoA-acyl carrier ... 456 e-134
>ref|XP_851896.1| PREDICTED: similar to Malonyl CoA-acyl carrier protein
transacylase, mitochondrial precursor (MCT)
(Mitochondrial malonyltransferase) [Canis familiaris].
Length = 403
Score = 456 bits (1173), Expect(2) = e-134
Identities = 228/271 (84%), Positives = 242/271 (89%)
Frame = +3
Query: 135 RSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGRG 314
R S+ P PPP AVDVAELLRDA EE PR A ARR PGQCSVLLFPGQGSQ+VGMGRG
Sbjct: 42 RGASDLPRPPPRAVDVAELLRDATVAEERPRAAEARRPPGQCSVLLFPGQGSQLVGMGRG 101
Query: 315 LLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQP 494
LLR+PR RELYAAAR VLGYDLLELSLHGPQE LDRT HCQPAVFVASLAAVEKL HLQP
Sbjct: 102 LLRFPRARELYAAARSVLGYDLLELSLHGPQEALDRTAHCQPAVFVASLAAVEKLQHLQP 161
Query: 495 AVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQP 674
AVIENCVAAAGFSVGEFAALVFAGAMEF EGLYAVKIRAEAMQ ASEAVPSGMLSVLG+P
Sbjct: 162 AVIENCVAAAGFSVGEFAALVFAGAMEFTEGLYAVKIRAEAMQAASEAVPSGMLSVLGKP 221
Query: 675 QSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRRT 854
QSKF+ AC EA+EHC+TLGI +PVCEVAN+LFPDCRVISGHLEAL +L+KNS KYHFRRT
Sbjct: 222 QSKFSFACLEAQEHCKTLGIADPVCEVANYLFPDCRVISGHLEALQFLQKNSSKYHFRRT 281
Query: 855 KMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 947
KM+PVSG FHTRLMEPALEPL VLK + +K
Sbjct: 282 KMLPVSGGFHTRLMEPALEPLTQVLKSVGVK 312
Score = 40.4 bits (93), Expect(2) = e-134
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +2
Query: 944 QKPLVSVHFHVTGNKYMHPKHFRQL 1018
+KPLVSVH +V G +YMHPKH ++L
Sbjct: 312 KKPLVSVHSNVDGKRYMHPKHIQKL 336
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,236,702
Number of extensions: 1035858
Number of successful extensions: 5500
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5476
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013557
(1019 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355366.1| PREDICTED: malonyl-CoA-acyl carrier protein ... 546 e-164
Alignment gi|XP_003126026.1| PREDICTED: malonyl-CoA-acyl carrier protein ... 546 e-164
>ref|XP_003355366.1| PREDICTED: malonyl-CoA-acyl carrier protein transacylase,
mitochondrial-like [Sus scrofa].
Length = 384
Score = 546 bits (1408), Expect(2) = e-164
Identities = 272/272 (100%), Positives = 272/272 (100%)
Frame = +3
Query: 132 HRSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGR 311
HRSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGR
Sbjct: 19 HRSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGR 78
Query: 312 GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 491
GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ
Sbjct: 79 GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 138
Query: 492 PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ 671
PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ
Sbjct: 139 PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ 198
Query: 672 PQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRR 851
PQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRR
Sbjct: 199 PQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRR 258
Query: 852 TKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 947
TKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK
Sbjct: 259 TKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 290
Score = 49.3 bits (116), Expect(2) = e-164
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +2
Query: 944 QKPLVSVHFHVTGNKYMHPKHFRQL 1018
+KPLVSVH +VTGNKYMHPKH RQL
Sbjct: 290 KKPLVSVHSNVTGNKYMHPKHIRQL 314
>ref|XP_003126026.1| PREDICTED: malonyl-CoA-acyl carrier protein transacylase,
mitochondrial-like [Sus scrofa].
Length = 384
Score = 546 bits (1408), Expect(2) = e-164
Identities = 272/272 (100%), Positives = 272/272 (100%)
Frame = +3
Query: 132 HRSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGR 311
HRSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGR
Sbjct: 19 HRSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGR 78
Query: 312 GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 491
GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ
Sbjct: 79 GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 138
Query: 492 PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ 671
PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ
Sbjct: 139 PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ 198
Query: 672 PQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRR 851
PQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRR
Sbjct: 199 PQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRR 258
Query: 852 TKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 947
TKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK
Sbjct: 259 TKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 290
Score = 49.3 bits (116), Expect(2) = e-164
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +2
Query: 944 QKPLVSVHFHVTGNKYMHPKHFRQL 1018
+KPLVSVH +VTGNKYMHPKH RQL
Sbjct: 290 KKPLVSVHSNVTGNKYMHPKHIRQL 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,690,172
Number of extensions: 650247
Number of successful extensions: 3321
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3309
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013557
(1019 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001025185.1| malonyl-CoA-acyl carrier protein transacylas... 425 e-124
Alignment gi|XP_911575.1| PREDICTED: malonyl-CoA-acyl carrier protein tra... 236 3e-62
>ref|NP_001025185.1| malonyl-CoA-acyl carrier protein transacylase, mitochondrial
precursor [Mus musculus].
Length = 381
Score = 425 bits (1092), Expect(2) = e-124
Identities = 214/272 (78%), Positives = 236/272 (86%), Gaps = 1/272 (0%)
Frame = +3
Query: 135 RSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLP-GQCSVLLFPGQGSQVVGMGR 311
R+ S+ PPP AVDVAELLRD++ EEG + A ARR P QCSVLLFPGQG Q VGMG
Sbjct: 18 RAASSLREPPPDAVDVAELLRDSSVAEEGAQEAVARRRPPSQCSVLLFPGQGCQAVGMGS 77
Query: 312 GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 491
GLL PRVR+LY AA RVLGYDLLEL L GPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ
Sbjct: 78 GLLHLPRVRQLYEAAHRVLGYDLLELCLRGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 137
Query: 492 PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ 671
PAVI+NCVAAAGFSVGEFAALVFAGAM+F EGLYAVK RAEAMQEASEAVPSGMLSVLGQ
Sbjct: 138 PAVIDNCVAAAGFSVGEFAALVFAGAMDFSEGLYAVKARAEAMQEASEAVPSGMLSVLGQ 197
Query: 672 PQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRR 851
QS F+ AC EA+EHC++LGIENPVC+V+N+LFPDCRVISGHLEAL +LR+NS KYHFRR
Sbjct: 198 RQSNFSFACLEAQEHCKSLGIENPVCQVSNYLFPDCRVISGHLEALQFLRRNSAKYHFRR 257
Query: 852 TKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 947
TKM+PVSG FHT LMEPA++PL VL I++K
Sbjct: 258 TKMLPVSGGFHTCLMEPAVDPLMKVLGSINIK 289
Score = 38.9 bits (89), Expect(2) = e-124
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 944 QKPLVSVHFHVTGNKYMHPKHFRQL 1018
+KPLV+VH +V+G KY HP+H R+L
Sbjct: 289 KKPLVAVHSNVSGQKYTHPQHIRKL 313
>ref|XP_911575.1| PREDICTED: malonyl-CoA-acyl carrier protein transacylase,
mitochondrial-like [Mus musculus].
Length = 173
Score = 236 bits (601), Expect = 3e-62
Identities = 122/156 (78%), Positives = 130/156 (83%), Gaps = 1/156 (0%)
Frame = +3
Query: 135 RSTSNFPLPPPGAVDVAELLRDAAAGEEGPRVAAARRLP-GQCSVLLFPGQGSQVVGMGR 311
R+ S+ PPP AVDVAELLRD++ EEG + A ARR P QCSVLLFPGQG Q VGMG
Sbjct: 18 RAASSLREPPPDAVDVAELLRDSSVAEEGAQEAVARRRPPSQCSVLLFPGQGCQAVGMGS 77
Query: 312 GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 491
GLL PRVR+LY AA RVLGYDLLEL L GPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ
Sbjct: 78 GLLHLPRVRQLYEAAHRVLGYDLLELCLRGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 137
Query: 492 PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAV 599
PAVI+NCVAAAGFSVGEFAALVFAGAM+F EG V
Sbjct: 138 PAVIDNCVAAAGFSVGEFAALVFAGAMDFSEGTQEV 173
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,498,365
Number of extensions: 835945
Number of successful extensions: 3954
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3941
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013557
(1019 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_775738.3| malonyl-CoA-acyl carrier protein transacylase, ... 463 e-133
Alignment gi|NP_055322.1| malonyl-CoA-acyl carrier protein transacylase, ... 261 9e-70
>ref|NP_775738.3| malonyl-CoA-acyl carrier protein transacylase, mitochondrial
isoform a precursor [Homo sapiens].
Length = 390
Score = 463 bits (1191), Expect(2) = e-133
Identities = 230/272 (84%), Positives = 247/272 (90%), Gaps = 1/272 (0%)
Frame = +3
Query: 135 RSTSNFPLPPPGAVDVAELLRDAA-AGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGR 311
R S+FP+PPPGA VAELLRDA A EE P A RR+PGQCSVLLFPGQGSQVVGMGR
Sbjct: 20 RGASSFPVPPPGAQGVAELLRDATGAEEEAPWAATERRMPGQCSVLLFPGQGSQVVGMGR 79
Query: 312 GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 491
GLL YPRVRELYAAARRVLGYDLLELSLHGPQE LDRTVHCQPA+FVASLAAVEKLHHLQ
Sbjct: 80 GLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQPAIFVASLAAVEKLHHLQ 139
Query: 492 PAVIENCVAAAGFSVGEFAALVFAGAMEFCEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ 671
P+VIENCVAAAGFSVGEFAALVFAGAMEF EGLYAVKIRAEAMQEASEAVPSGMLSVLGQ
Sbjct: 140 PSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIRAEAMQEASEAVPSGMLSVLGQ 199
Query: 672 PQSKFTVACREAREHCRTLGIENPVCEVANFLFPDCRVISGHLEALHYLRKNSYKYHFRR 851
PQSKF AC EAREHC++LGIENPVCEV+N+LFPDCRVISGH EAL +L+KNS K+HFRR
Sbjct: 200 PQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVISGHQEALRFLQKNSSKFHFRR 259
Query: 852 TKMVPVSGAFHTRLMEPALEPLAHVLKDIDLK 947
T+M+PVSGAFHTRLMEPA+EPL LK +D+K
Sbjct: 260 TRMLPVSGAFHTRLMEPAVEPLTQALKAVDIK 291
Score = 30.4 bits (67), Expect(2) = e-133
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 944 QKPLVSVHFHVTGNKYMHPKHFRQL 1018
+KPLVSV+ +V ++Y HP H +L
Sbjct: 291 KKPLVSVYSNVHAHRYRHPGHIHKL 315
>ref|NP_055322.1| malonyl-CoA-acyl carrier protein transacylase, mitochondrial
isoform b precursor [Homo sapiens].
Length = 180
Score = 261 bits (666), Expect = 9e-70
Identities = 132/152 (86%), Positives = 137/152 (90%), Gaps = 1/152 (0%)
Frame = +3
Query: 135 RSTSNFPLPPPGAVDVAELLRDAA-AGEEGPRVAAARRLPGQCSVLLFPGQGSQVVGMGR 311
R S+FP+PPPGA VAELLRDA A EE P A RR+PGQCSVLLFPGQGSQVVGMGR
Sbjct: 20 RGASSFPVPPPGAQGVAELLRDATGAEEEAPWAATERRMPGQCSVLLFPGQGSQVVGMGR 79
Query: 312 GLLRYPRVRELYAAARRVLGYDLLELSLHGPQEDLDRTVHCQPAVFVASLAAVEKLHHLQ 491
GLL YPRVRELYAAARRVLGYDLLELSLHGPQE LDRTVHCQPA+FVASLAAVEKLHHLQ
Sbjct: 80 GLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQPAIFVASLAAVEKLHHLQ 139
Query: 492 PAVIENCVAAAGFSVGEFAALVFAGAMEFCEG 587
P+VIENCVAAAGFSVGEFAALVFAGAMEF EG
Sbjct: 140 PSVIENCVAAAGFSVGEFAALVFAGAMEFAEG 171
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,397,887
Number of extensions: 1006679
Number of successful extensions: 4877
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4867
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013557
(1019 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 955 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 955 bits (482), Expect = 0.0
Identities = 485/486 (99%)
Strand = Plus / Plus
Query: 14 gcgccgcgccgccgcagtcgggcctcggtcgccccggtaacgtgcgtggggcaattttct 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3164829 gcgccgcgccgccgcagtcgggcctcggtcgccccggtaacgtgcgtggggcaattttct 3164888
Query: 74 caccatgagcgtccgggttgcgcgggctgcgtgggcctgtggctggcgcgcgggaggtca 133
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3164889 caccatgagcgtccgggttgcgcgggctgcctgggcctgtggctggcgcgcgggaggtca 3164948
Query: 134 ccgcagcacctcgaacttcccgctgcctccgccgggcgcggtggacgtggcggagctgct 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3164949 ccgcagcacctcgaacttcccgctgcctccgccgggcgcggtggacgtggcggagctgct 3165008
Query: 194 gcgagatgcggcagcgggggaggaagggccccgggtggcggcggcgcggcggttgccggg 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165009 gcgagatgcggcagcgggggaggaagggccccgggtggcggcggcgcggcggttgccggg 3165068
Query: 254 ccagtgctcggtgctgctcttcccgggccagggcagccaggtagtgggcatgggccgcgg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165069 ccagtgctcggtgctgctcttcccgggccagggcagccaggtagtgggcatgggccgcgg 3165128
Query: 314 tctgctccgctacccgcgcgtccgcgagctctacgccgccgcccgccgcgtgctgggtta 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165129 tctgctccgctacccgcgcgtccgcgagctctacgccgccgcccgccgcgtgctgggtta 3165188
Query: 374 cgacctgctggagctgagcctgcatgggcctcaggaggacctggaccgcaccgtgcactg 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165189 cgacctgctggagctgagcctgcatgggcctcaggaggacctggaccgcaccgtgcactg 3165248
Query: 434 ccagcccgccgtcttcgtggcttcgctggctgccgtggagaaactgcatcacctgcagcc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165249 ccagcccgccgtcttcgtggcttcgctggctgccgtggagaaactgcatcacctgcagcc 3165308
Query: 494 cgcggt 499
||||||
Sbjct: 3165309 cgcggt 3165314
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 584 aggcttgtatgcagtgaagatccgagcggaggccatgcaggaagcctcggaagctgtccc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3170894 aggcttgtatgcagtgaagatccgagcggaggccatgcaggaagcctcggaagctgtccc 3170953
Query: 644 cagcgggatgttgtccgtccttggccagccccagtccaagttcaccgtcgcctgtcggga 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3170954 cagcgggatgttgtccgtccttggccagccccagtccaagttcaccgtcgcctgtcggga 3171013
Query: 704 agcccgggagcactgcaggactttgggcatagagaacccggtgtgcgaggtggccaactt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3171014 agcccgggagcactgcaggactttgggcatagagaacccggtgtgcgaggtggccaactt 3171073
Query: 764 cctcttccccgactgcagggtgatctcaggacacctggagg 804
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 3171074 cctcttccccgactgcagggtgatctcaggacacctggagg 3171114
Score = 394 bits (199), Expect = e-107
Identities = 215/219 (98%), Gaps = 1/219 (0%)
Strand = Plus / Plus
Query: 802 aggctctgcactacctccggaagaattcctacaagtatcacttcagacgcaccaagatgg 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3172224 aggctctgcactacctccggaagaattcctacaagtatcacttcagacgcaccaagatgg 3172283
Query: 862 tgcccgtcagcggcgccttccacacccgcctcatggagccagccctggagcccctggcac 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3172284 tgcccgtcagcggcgccttccacacccgcctcatggagccagccctggagcccctggcac 3172343
Query: 922 acgttctaaaagacattgatctcaa-aagcctctggtttctgtccatttccacgtcactg 980
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct: 3172344 acgttctaaaagacattgatctcaagaagcctctggtttctgtccattccaacgtcactg 3172403
Query: 981 ggaataaatacatgcaccccaaacacttccggcagctgc 1019
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 3172404 ggaataaatacatgcaccccaaacacatccggcagctgc 3172442
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 497 ggttattgagaactgtgttgctgctgctggattcagtgtgggagaatttgcagccctagt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3167161 ggttattgagaactgtgttgctgctgctggattcagtgtgggagaatttgcagccctagt 3167220
Query: 557 gtttgctggagccatggaattttgtgaagg 586
||||||||||||||||||||||||||||||
Sbjct: 3167221 gtttgctggagccatggaattttgtgaagg 3167250
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,094,453
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 4
Length of query: 1019
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 998
Effective length of database: 2,808,413,156
Effective search space: 2802796329688
Effective search space used: 2802796329688
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)