Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013569
(1848 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096742.1| guanine nucleotide-binding protein-like 1 [B... 946 0.0
Alignment gi|NP_001039375.1| large subunit GTPase 1 homolog [Bos taurus]. 116 6e-26
Alignment gi|NP_001039432.1| nucleolar GTP-binding protein 2 [Bos taurus]. 71 4e-12
Alignment gi|NP_001029479.1| guanine nucleotide-binding protein-like 3-li... 59 1e-08
>ref|NP_001096742.1| guanine nucleotide-binding protein-like 1 [Bos taurus].
Length = 607
Score = 946 bits (2445), Expect = 0.0
Identities = 467/520 (89%), Positives = 469/520 (90%)
Frame = +3
Query: 288 MPRXXXXXXXXXXXQLQDKRERKRGLQDGLXXXXXXXXXXXXXXXXQTDTSDGESVTHHI 467
MPR QLQDKRERKRGLQDGL QTDTSDGESVTHHI
Sbjct: 1 MPRKKPFSVKQKKKQLQDKRERKRGLQDGLRSSSNSRSGSRERREEQTDTSDGESVTHHI 60
Query: 468 RRLNQQPSQGLGPRGYDPNRYRLHFERDSXXXXXXXXXXXXXQVLQPVSAELLELDIQEV 647
RRLNQQPSQGLGPRGYDPNRYRLHFERDS QVLQPVSAELLELDI+EV
Sbjct: 61 RRLNQQPSQGLGPRGYDPNRYRLHFERDSREEVERRKRAAREQVLQPVSAELLELDIREV 120
Query: 648 YQPGSVLDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ 827
YQPGSVLDFPRRPPW+YEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ
Sbjct: 121 YQPGSVLDFPRRPPWSYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ 180
Query: 828 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 1007
LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH
Sbjct: 181 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 240
Query: 1008 YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG 1187
YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG
Sbjct: 241 YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG 300
Query: 1188 KVDLSSWREKIARDVAGATWGNGSGXXXXXXDGPAVLVEQQTDSAMEPTGPTRERYKDGV 1367
KVDLSSWREKIARDVAGATWGNGSG DGPAVLVEQQTDSAMEPTGP RERYKDGV
Sbjct: 301 KVDLSSWREKIARDVAGATWGNGSGEEEEEEDGPAVLVEQQTDSAMEPTGPARERYKDGV 360
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
TIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL
Sbjct: 361 ATIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 420
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE
Sbjct: 421 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 480
Query: 1728 AWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
AWAEKRGYKTAKA RNDVYRAANSL LALDGRLSLCFHP
Sbjct: 481 AWAEKRGYKTAKAARNDVYRAANSLLRLALDGRLSLCFHP 520
>ref|NP_001039375.1| large subunit GTPase 1 homolog [Bos taurus].
Length = 652
Score = 116 bits (291), Expect = 6e-26
Identities = 66/173 (38%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Frame = +3
Query: 1347 ERYKDGVVTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCP 1526
++ KDG +T+G VG+PNVGKSS IN ++G K VSVS TPGHT++FQT ++ P + LCDCP
Sbjct: 374 KKVKDGQLTVGLVGYPNVGKSSTINTILGNKKVSVSATPGHTKHFQTLYVEPGLCLCDCP 433
Query: 1527 GLIFPSLLPRQLQVL-AGIYPIAQIQEPYTAVGYLASRIPVQAL-----LHLRHPEAEDP 1688
GL+ PS + + +++ +GI PI Q+++ V + IP L + + P ED
Sbjct: 434 GLVMPSFVSTKAEMICSGILPIDQMRDHVPPVSLVCQNIPRHVLEATYGIDIIKPR-EDE 492
Query: 1689 SAEHPWCAWDICEAWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
P + ++ A+ RG+ TA G+ D R+A + ++G+L C P
Sbjct: 493 DPRRPPTSEELLTAYGCMRGFMTAH-GQPDQPRSARYILKDYVNGKLLYCHPP 544
Score = 72.8 bits (177), Expect = 1e-12
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Frame = +3
Query: 666 LDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKL--SYFEHNLETWRQLWRV 839
L PRRP W+ + S E+L E+ +F E+ ++ + L + FE NL+ WRQLWRV
Sbjct: 111 LCIPRRPKWDQKTSPEELKQAEKDNFLEWRRQLVWLEEEQNLILTPFERNLDFWRQLWRV 170
Query: 840 LEMSDIVLLITDIRHPVVNFPPALYEYV-TGELGLALVLVLNKVDLAPPALVVAWKHYF 1013
+E SDIV+ I D R+P++ L YV T + V+++NK DL AW +F
Sbjct: 171 IERSDIVVQIVDARNPLLFRCEDLECYVKTIDDNKENVILINKADLLTAEQRSAWAEFF 229
>ref|NP_001039432.1| nucleolar GTP-binding protein 2 [Bos taurus].
Length = 732
Score = 70.9 bits (172), Expect = 4e-12
Identities = 41/132 (31%), Positives = 69/132 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+++G +G+PNVGKSS+IN L +KV +V+ G T+ +Q L + L DCPG+++PS
Sbjct: 311 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSE 370
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
VL G+ + +I+ P +G + L + E S + +W+ E
Sbjct: 371 DSETDIVLKGVVQVEKIKTPEDHIGAV-----------LERAKPEYISKTYKINSWENAE 419
Query: 1728 AWAEKRGYKTAK 1763
+ EK ++T K
Sbjct: 420 DFLEKLAFRTGK 431
>ref|NP_001029479.1| guanine nucleotide-binding protein-like 3-like protein [Bos taurus].
Length = 575
Score = 58.9 bits (141), Expect = 1e-08
Identities = 31/96 (32%), Positives = 50/96 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+ +G VG PNVGKSSLIN L + SV PG T++ Q +L ++L D PG++ P
Sbjct: 246 IRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLDKFIRLLDAPGIV-PGP 304
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQAL 1655
+L + ++ +P T V + R ++ +
Sbjct: 305 NSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEI 340
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,008,031
Number of extensions: 2071688
Number of successful extensions: 11407
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11335
Number of HSP's successfully gapped: 5
Length of query: 616
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 508
Effective length of database: 14,107,870
Effective search space: 7166797960
Effective search space used: 7166797960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013569
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013569
(1848 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848324.1| PREDICTED: similar to guanine nucleotide bindin... 933 0.0
Alignment gi|XP_532055.2| PREDICTED: similar to guanine nucleotide bindin... 661 0.0
Alignment gi|XP_535782.2| PREDICTED: similar to CG14788-PA [Canis familia... 166 9e-41
Alignment gi|XP_858385.1| PREDICTED: similar to Nucleolar GTP-binding pro... 71 4e-12
Alignment gi|XP_858349.1| PREDICTED: similar to Nucleolar GTP-binding pro... 71 4e-12
Alignment gi|XP_858307.1| PREDICTED: similar to Nucleolar GTP-binding pro... 71 4e-12
Alignment gi|XP_532556.2| PREDICTED: similar to Nucleolar GTP-binding pro... 71 4e-12
Alignment gi|XP_538054.2| PREDICTED: similar to guanine nucleotide bindin... 59 2e-08
>ref|XP_848324.1| PREDICTED: similar to guanine nucleotide binding protein-like 1
isoform 2 [Canis familiaris].
Length = 607
Score = 933 bits (2412), Expect = 0.0
Identities = 461/520 (88%), Positives = 467/520 (89%)
Frame = +3
Query: 288 MPRXXXXXXXXXXXQLQDKRERKRGLQDGLXXXXXXXXXXXXXXXXQTDTSDGESVTHHI 467
MPR QLQDKRERKRGLQDGL QTDTSDGES+THHI
Sbjct: 1 MPRKKPFSVKQKKKQLQDKRERKRGLQDGLRSSSNSRSGSRERREEQTDTSDGESMTHHI 60
Query: 468 RRLNQQPSQGLGPRGYDPNRYRLHFERDSXXXXXXXXXXXXXQVLQPVSAELLELDIQEV 647
RRLNQQPSQGLGPRGYD NRYRLHFERDS QVLQPVSAELLELDI+EV
Sbjct: 61 RRLNQQPSQGLGPRGYDANRYRLHFERDSREEVERRKRAAREQVLQPVSAELLELDIREV 120
Query: 648 YQPGSVLDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ 827
YQ GSVLDFPRRPPW+YEMSKEQLMSQEERSFQEYLGKIHGAY+SEKLSYFEHNLETWRQ
Sbjct: 121 YQLGSVLDFPRRPPWSYEMSKEQLMSQEERSFQEYLGKIHGAYSSEKLSYFEHNLETWRQ 180
Query: 828 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 1007
LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH
Sbjct: 181 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 240
Query: 1008 YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG 1187
YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG
Sbjct: 241 YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG 300
Query: 1188 KVDLSSWREKIARDVAGATWGNGSGXXXXXXDGPAVLVEQQTDSAMEPTGPTRERYKDGV 1367
KVDLSSWREKIARDVAGATWGNGSG DGPAVLVEQQTDSAMEPTGPT+E YKDGV
Sbjct: 301 KVDLSSWREKIARDVAGATWGNGSGEEEEEEDGPAVLVEQQTDSAMEPTGPTQEHYKDGV 360
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL
Sbjct: 361 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 420
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQ LLHLRHPEA+DPSAEHPWCAWDICE
Sbjct: 421 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQVLLHLRHPEAKDPSAEHPWCAWDICE 480
Query: 1728 AWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
AWAEKRGYKTAKA RNDVYRAANSL LALDGRLSLCFHP
Sbjct: 481 AWAEKRGYKTAKAARNDVYRAANSLLRLALDGRLSLCFHP 520
>ref|XP_532055.2| PREDICTED: similar to guanine nucleotide binding protein-like 1
isoform 1 [Canis familiaris].
Length = 421
Score = 661 bits (1705), Expect = 0.0
Identities = 321/334 (96%), Positives = 323/334 (96%)
Frame = +3
Query: 846 MSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKHYFHQHY 1025
MSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKHYFHQHY
Sbjct: 1 MSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKHYFHQHY 60
Query: 1026 PQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAGKVDLSS 1205
PQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAGKVDLSS
Sbjct: 61 PQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAGKVDLSS 120
Query: 1206 WREKIARDVAGATWGNGSGXXXXXXDGPAVLVEQQTDSAMEPTGPTRERYKDGVVTIGCV 1385
WREKIARDVAGATWGNGSG DGPAVLVEQQTDSAMEPTGPT+E YKDGVVTIGCV
Sbjct: 121 WREKIARDVAGATWGNGSGEEEEEEDGPAVLVEQQTDSAMEPTGPTQEHYKDGVVTIGCV 180
Query: 1386 GFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSLLPRQLQ 1565
GFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSLLPRQLQ
Sbjct: 181 GFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSLLPRQLQ 240
Query: 1566 VLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICEAWAEKR 1745
VLAGIYPIAQIQEPYTAVGYLASRIPVQ LLHLRHPEA+DPSAEHPWCAWDICEAWAEKR
Sbjct: 241 VLAGIYPIAQIQEPYTAVGYLASRIPVQVLLHLRHPEAKDPSAEHPWCAWDICEAWAEKR 300
Query: 1746 GYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
GYKTAKA RNDVYRAANSL LALDGRLSLCFHP
Sbjct: 301 GYKTAKAARNDVYRAANSLLRLALDGRLSLCFHP 334
>ref|XP_535782.2| PREDICTED: similar to CG14788-PA [Canis familiaris].
Length = 718
Score = 166 bits (419), Expect = 9e-41
Identities = 131/445 (29%), Positives = 200/445 (44%), Gaps = 51/445 (11%)
Frame = +3
Query: 666 LDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKL--SYFEHNLETWRQLWRV 839
L PRRP W+ S E+L E+ +F E+ ++ +KL + FE NL+ WRQLWRV
Sbjct: 172 LSIPRRPKWDKNTSPEELQQAEKDNFLEWRRQLVRLEEEQKLLLTPFERNLDFWRQLWRV 231
Query: 840 LEMSDIVLLITDIRHPVVNFPPALYEYVTG-ELGLALVLVLNKVDLAPPALVVAWKHYFH 1016
+E SDIV+ I D R+P++ L YV + V+++NK DL AW YF
Sbjct: 232 IERSDIVVQIVDARNPLLFRCEDLECYVKEVDDSKENVILINKADLLTVEQRSAWATYFE 291
Query: 1017 QHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEA------- 1175
+ + ++F S P S V + + + G E+ C
Sbjct: 292 KEDVK---IIFWSALAAAIQPTGDSEVNRSAGEANTAESEKSGCEEAAVPCSEPRHLPDR 348
Query: 1176 -------ITAGKVDLSSWRE-----------------KIARDVAGATWGNGSGXXXXXXD 1283
+T D S + + + G W GS
Sbjct: 349 ASLSLSDVTTSDEDASEYEDCQEEEEEVWQTCSEEDGNPNEEAYGRDW-QGSCTADSETQ 407
Query: 1284 GPAVLVEQQTDSAMEPTGP-----------TRERYKDGVVTIGCVGFPNVGKSSLINGLV 1430
G L ++ T + T ++ KDG +T+G VG+PNVGKSS IN ++
Sbjct: 408 GRNTLRKRHTHNFSHLVSRQELLEIFKQLHTGKKMKDGQLTVGLVGYPNVGKSSTINTIM 467
Query: 1431 GRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSLLPRQLQVLA-GIYPIAQIQEP 1607
G K VSVS TPGHT++FQT ++ P + LCDCPGL+ PS + + +++ GI PI Q+++
Sbjct: 468 GDKKVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPSFVSTKAEMICNGILPIDQMRDH 527
Query: 1608 YTAVGYLASRIPVQAL-----LHLRHPEAEDPSAEHPWCAWDICEAWAEKRGYKTAKAGR 1772
V + IP L +++ P ED P + ++ A+ RG+ TA G+
Sbjct: 528 VPPVSLICQNIPRHVLEATYGINIIKPR-EDEDPHRPPTSEELLTAYGYMRGFMTAH-GQ 585
Query: 1773 NDVYRAANSLPALALDGRLSLCFHP 1847
D R+A + + G+L C P
Sbjct: 586 PDQSRSARYILKDFVSGKLLYCHPP 610
>ref|XP_858385.1| PREDICTED: similar to Nucleolar GTP-binding protein 2 (Autoantigen
NGP-1) isoform 5 [Canis familiaris].
Length = 729
Score = 70.9 bits (172), Expect = 4e-12
Identities = 41/132 (31%), Positives = 69/132 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+++G +G+PNVGKSS+IN L +KV +V+ G T+ +Q L + L DCPG+++PS
Sbjct: 311 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSE 370
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
VL G+ + +I+ P +G + L + E S + +W+ E
Sbjct: 371 DSETDIVLKGVVQVEKIKTPEDHIGAV-----------LERAKPEYISKTYKIDSWENAE 419
Query: 1728 AWAEKRGYKTAK 1763
+ EK ++T K
Sbjct: 420 DFLEKLAFRTGK 431
>ref|XP_858349.1| PREDICTED: similar to Nucleolar GTP-binding protein 2 (Autoantigen
NGP-1) isoform 4 [Canis familiaris].
Length = 731
Score = 70.9 bits (172), Expect = 4e-12
Identities = 41/132 (31%), Positives = 69/132 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+++G +G+PNVGKSS+IN L +KV +V+ G T+ +Q L + L DCPG+++PS
Sbjct: 311 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSE 370
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
VL G+ + +I+ P +G + L + E S + +W+ E
Sbjct: 371 DSETDIVLKGVVQVEKIKTPEDHIGAV-----------LERAKPEYISKTYKIDSWENAE 419
Query: 1728 AWAEKRGYKTAK 1763
+ EK ++T K
Sbjct: 420 DFLEKLAFRTGK 431
>ref|XP_858307.1| PREDICTED: similar to Nucleolar GTP-binding protein 2 (Autoantigen
NGP-1) isoform 3 [Canis familiaris].
Length = 678
Score = 70.9 bits (172), Expect = 4e-12
Identities = 41/132 (31%), Positives = 69/132 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+++G +G+PNVGKSS+IN L +KV +V+ G T+ +Q L + L DCPG+++PS
Sbjct: 258 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSE 317
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
VL G+ + +I+ P +G + L + E S + +W+ E
Sbjct: 318 DSETDIVLKGVVQVEKIKTPEDHIGAV-----------LERAKPEYISKTYKIDSWENAE 366
Query: 1728 AWAEKRGYKTAK 1763
+ EK ++T K
Sbjct: 367 DFLEKLAFRTGK 378
>ref|XP_532556.2| PREDICTED: similar to Nucleolar GTP-binding protein 2 (Autoantigen
NGP-1) isoform 1 [Canis familiaris].
Length = 731
Score = 70.9 bits (172), Expect = 4e-12
Identities = 41/132 (31%), Positives = 69/132 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+++G +G+PNVGKSS+IN L +KV +V+ G T+ +Q L + L DCPG+++PS
Sbjct: 311 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSE 370
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
VL G+ + +I+ P +G + L + E S + +W+ E
Sbjct: 371 DSETDIVLKGVVQVEKIKTPEDHIGAV-----------LERAKPEYISKTYKIDSWENAE 419
Query: 1728 AWAEKRGYKTAK 1763
+ EK ++T K
Sbjct: 420 DFLEKLAFRTGK 431
>ref|XP_538054.2| PREDICTED: similar to guanine nucleotide binding protein-like 3
(nucleolar)-like [Canis familiaris].
Length = 649
Score = 58.9 bits (141), Expect = 2e-08
Identities = 31/96 (32%), Positives = 49/96 (51%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+ +G VG PNVGKSSLIN L + SV PG T++ Q +L ++L D PG++ P
Sbjct: 320 IRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLDKFIRLLDAPGIV-PGP 378
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQAL 1655
+L + + +P T V + R ++ +
Sbjct: 379 NSEVGTILRNCVQVQNLADPVTPVETILQRCNLEEI 414
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,013,238
Number of extensions: 2133641
Number of successful extensions: 11868
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11767
Number of HSP's successfully gapped: 9
Length of query: 616
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 507
Effective length of database: 15,240,880
Effective search space: 7727126160
Effective search space used: 7727126160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013569
(1848 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121950.1| guanine nucleotide-binding protein-like 1 [S... 953 0.0
Alignment gi|XP_001928271.1| PREDICTED: large subunit GTPase 1 homolog [S... 118 1e-26
Alignment gi|XP_001925896.3| PREDICTED: large subunit GTPase 1 homolog [S... 72 8e-13
Alignment gi|XP_003361973.1| PREDICTED: LOW QUALITY PROTEIN: nucleolar GT... 71 2e-12
Alignment gi|XP_003135166.2| PREDICTED: guanine nucleotide-binding protei... 59 9e-09
Alignment gi|XP_001928489.1| PREDICTED: guanine nucleotide-binding protei... 54 2e-07
>ref|NP_001121950.1| guanine nucleotide-binding protein-like 1 [Sus scrofa].
Length = 607
Score = 953 bits (2463), Expect = 0.0
Identities = 471/520 (90%), Positives = 471/520 (90%)
Frame = +3
Query: 288 MPRXXXXXXXXXXXQLQDKRERKRGLQDGLXXXXXXXXXXXXXXXXQTDTSDGESVTHHI 467
MPR QLQDKRERKRGLQDGL QTDTSDGESVTHHI
Sbjct: 1 MPRKKPFSVKQKKKQLQDKRERKRGLQDGLRSSSNSRSGSRERREEQTDTSDGESVTHHI 60
Query: 468 RRLNQQPSQGLGPRGYDPNRYRLHFERDSXXXXXXXXXXXXXQVLQPVSAELLELDIQEV 647
RRLNQQPSQGLGPRGYDPNRYRLHFERDS QVLQPVSAELLELDIQEV
Sbjct: 61 RRLNQQPSQGLGPRGYDPNRYRLHFERDSREEVERRKRAAREQVLQPVSAELLELDIQEV 120
Query: 648 YQPGSVLDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ 827
YQPGSVLDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ
Sbjct: 121 YQPGSVLDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ 180
Query: 828 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 1007
LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH
Sbjct: 181 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 240
Query: 1008 YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG 1187
YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG
Sbjct: 241 YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG 300
Query: 1188 KVDLSSWREKIARDVAGATWGNGSGXXXXXXDGPAVLVEQQTDSAMEPTGPTRERYKDGV 1367
KVDLSSWREKIARDVAGATWGNGSG DGPAVLVEQQTDSAMEPTGPTRERYKDGV
Sbjct: 301 KVDLSSWREKIARDVAGATWGNGSGEEEEEEDGPAVLVEQQTDSAMEPTGPTRERYKDGV 360
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL
Sbjct: 361 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 420
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE
Sbjct: 421 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 480
Query: 1728 AWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
AWAEKRGYKTAKA RNDVYRAANSL LALDGRLSLCFHP
Sbjct: 481 AWAEKRGYKTAKAARNDVYRAANSLLRLALDGRLSLCFHP 520
>ref|XP_001928271.1| PREDICTED: large subunit GTPase 1 homolog [Sus scrofa].
Length = 652
Score = 118 bits (296), Expect = 1e-26
Identities = 66/173 (38%), Positives = 103/173 (59%), Gaps = 6/173 (3%)
Frame = +3
Query: 1347 ERYKDGVVTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCP 1526
++ KDG +T+G VG+PNVGKSS IN ++G K VSVS TPGHT++FQT ++ P + LCDCP
Sbjct: 374 KKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHFQTLYVEPGLCLCDCP 433
Query: 1527 GLIFPSLLPRQLQVL-AGIYPIAQIQEPYTAVGYLASRIPVQAL-----LHLRHPEAEDP 1688
GL+ PS + + +++ +GI PI Q+++ A+ + IP + L + + P ED
Sbjct: 434 GLVMPSFVSTKAEMICSGILPIDQMRDHVPAISLVCQNIPRRVLEATYGIDIIKPR-EDE 492
Query: 1689 SAEHPWCAWDICEAWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
P + + A+ RG+ TA G+ D R+A + ++G+L C P
Sbjct: 493 DPHRPPTSEEFLTAYGYMRGFMTAH-GQPDQPRSARYILKDYVNGKLLYCHPP 544
Score = 72.4 bits (176), Expect = 8e-13
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Frame = +3
Query: 666 LDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKL--SYFEHNLETWRQLWRV 839
L PRRP W+ + S E+L E+ +F E+ ++ + L + FE NL+ WRQLWRV
Sbjct: 111 LCIPRRPKWDQKTSPEELKQAEKDNFLEWRRQLVRLEEEQNLILTPFERNLDFWRQLWRV 170
Query: 840 LEMSDIVLLITDIRHPVVNFPPALYEYVTG-ELGLALVLVLNKVDLAPPALVVAWKHYFH 1016
+E SDIV+ I D R+P++ L YV + V+++NK DL AW +F
Sbjct: 171 IERSDIVVQIVDARNPLLFRCEDLECYVKSLDDNKENVILINKADLLTAEQRSAWAEFFE 230
Query: 1017 Q 1019
+
Sbjct: 231 K 231
>ref|XP_001925896.3| PREDICTED: large subunit GTPase 1 homolog [Sus scrofa].
Length = 315
Score = 72.4 bits (176), Expect = 8e-13
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Frame = +3
Query: 666 LDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKL--SYFEHNLETWRQLWRV 839
L PRRP W+ + S E+L E+ +F E+ ++ + L + FE NL+ WRQLWRV
Sbjct: 111 LCIPRRPKWDQKTSPEELKQAEKDNFLEWRRQLVRLEEEQNLILTPFERNLDFWRQLWRV 170
Query: 840 LEMSDIVLLITDIRHPVVNFPPALYEYVTG-ELGLALVLVLNKVDLAPPALVVAWKHYFH 1016
+E SDIV+ I D R+P++ L YV + V+++NK DL AW +F
Sbjct: 171 IERSDIVVQIVDARNPLLFRCEDLECYVKSLDDNKENVILINKADLLTAEQRSAWAEFFE 230
Query: 1017 Q 1019
+
Sbjct: 231 K 231
>ref|XP_003361973.1| PREDICTED: LOW QUALITY PROTEIN: nucleolar GTP-binding protein 2-like
[Sus scrofa].
Length = 652
Score = 70.9 bits (172), Expect = 2e-12
Identities = 41/132 (31%), Positives = 69/132 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+++G +G+PNVGKSS+IN L +KV +V+ G T+ +Q L + L DCPG+++PS
Sbjct: 312 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSE 371
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
VL G+ + +I+ P +G + L + E S + +W+ E
Sbjct: 372 DSETDIVLKGVVQVEKIKTPEDHIGAV-----------LERAKPEYISKTYKIDSWENAE 420
Query: 1728 AWAEKRGYKTAK 1763
+ EK ++T K
Sbjct: 421 DFLEKLAFRTGK 432
>ref|XP_003135166.2| PREDICTED: guanine nucleotide-binding protein-like 3-like
protein-like [Sus scrofa].
Length = 582
Score = 58.9 bits (141), Expect = 9e-09
Identities = 31/90 (34%), Positives = 47/90 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+ +G VG PNVGKSSLIN L + SV PG T++ Q +L ++L D PG++ P
Sbjct: 253 IRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLDKFIRLLDAPGIV-PGP 311
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASR 1637
+L + ++ +P T V + R
Sbjct: 312 NSEVGTILRNCIQVQKLADPVTPVETILQR 341
>ref|XP_001928489.1| PREDICTED: guanine nucleotide-binding protein-like 3 [Sus scrofa].
Length = 548
Score = 54.3 bits (129), Expect = 2e-07
Identities = 46/160 (28%), Positives = 68/160 (42%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+ +G +GFPNVGKSS+IN L ++ +V + G TR Q L + L D PG I L
Sbjct: 251 ICVGVIGFPNVGKSSIINSLKQERICNVGVSMGLTRCMQVVPLDKQITLIDSPGFIASPL 310
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
L I I+ A L+ Q +L P+ E+ + +
Sbjct: 311 NSASALALRSPASIEVIKPMEAASAILSHADARQVVLKFTVPDFEN--------SLEFFT 362
Query: 1728 AWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
++A++RG K G +V AA L + L HP
Sbjct: 363 SFAQRRGLH-QKGGSPNVEGAAKLLWSEWTGASLGYYCHP 401
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,975,394
Number of extensions: 1348788
Number of successful extensions: 7158
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7115
Number of HSP's successfully gapped: 7
Length of query: 616
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 511
Effective length of database: 8,729,747
Effective search space: 4460900717
Effective search space used: 4460900717
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013569
(1848 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032162.2| guanine nucleotide-binding protein-like 1 [Mus ... 918 0.0
Alignment gi|NP_835170.1| large subunit GTPase 1 homolog [Mus musculus]. 117 4e-26
Alignment gi|NP_663527.2| nucleolar GTP-binding protein 2 [Mus musculus]. 69 9e-12
Alignment gi|NP_001162071.1| guanine nucleotide-binding protein-like 3-li... 60 6e-09
Alignment gi|NP_932778.1| guanine nucleotide-binding protein-like 3-like ... 60 6e-09
>ref|NP_032162.2| guanine nucleotide-binding protein-like 1 [Mus musculus].
Length = 607
Score = 918 bits (2373), Expect = 0.0
Identities = 452/520 (86%), Positives = 464/520 (89%)
Frame = +3
Query: 288 MPRXXXXXXXXXXXQLQDKRERKRGLQDGLXXXXXXXXXXXXXXXXQTDTSDGESVTHHI 467
MPR QLQDKRERKRGLQDGL QTDTSDGESVTHHI
Sbjct: 1 MPRKKPFSVKQKKKQLQDKRERKRGLQDGLRSSSNSRSGSRERREEQTDTSDGESVTHHI 60
Query: 468 RRLNQQPSQGLGPRGYDPNRYRLHFERDSXXXXXXXXXXXXXQVLQPVSAELLELDIQEV 647
RRLNQQPSQGLGPRGYDPNRYRLHFERDS QVLQPVSAE+LELDI+EV
Sbjct: 61 RRLNQQPSQGLGPRGYDPNRYRLHFERDSREEVERRKRAAREQVLQPVSAEVLELDIREV 120
Query: 648 YQPGSVLDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ 827
YQPGSVLDFPRRPPW+YEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ
Sbjct: 121 YQPGSVLDFPRRPPWSYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ 180
Query: 828 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 1007
LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH
Sbjct: 181 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 240
Query: 1008 YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG 1187
YFHQ YPQLHIVLFTSFPRD RTPQ+P VLKK+RRRG+GWTRALGPEQLLRACEAIT G
Sbjct: 241 YFHQCYPQLHIVLFTSFPRDTRTPQEPGGVLKKNRRRGKGWTRALGPEQLLRACEAITVG 300
Query: 1188 KVDLSSWREKIARDVAGATWGNGSGXXXXXXDGPAVLVEQQTDSAMEPTGPTRERYKDGV 1367
KVDLSSWREKIARDVAGA+WGN SG DGPAVLVEQ TDSAMEPTGP+RERYKDGV
Sbjct: 301 KVDLSSWREKIARDVAGASWGNVSGEEEEEEDGPAVLVEQLTDSAMEPTGPSRERYKDGV 360
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
VTIGC+GFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL
Sbjct: 361 VTIGCIGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 420
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
LPRQLQVLAGIYPIAQIQEPYT+VGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE
Sbjct: 421 LPRQLQVLAGIYPIAQIQEPYTSVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 480
Query: 1728 AWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
AWAEKRGYKTAKA RNDVYRAANSL LA+DGRLSLCF+P
Sbjct: 481 AWAEKRGYKTAKAARNDVYRAANSLLRLAVDGRLSLCFYP 520
>ref|NP_835170.1| large subunit GTPase 1 homolog [Mus musculus].
Length = 644
Score = 117 bits (292), Expect = 4e-26
Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Frame = +3
Query: 1341 TRERYKDGVVTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCD 1520
T ++ KDG +T+G VG+PNVGKSS IN ++G K VSVS TPGHT++FQT ++ P + LCD
Sbjct: 364 TGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHFQTLYVEPGLCLCD 423
Query: 1521 CPGLIFPSLLPRQLQVLA-GIYPIAQIQEPYTAVGYLASRIPVQAL-----LHLRHPEAE 1682
CPGL+ PS + + +++ GI PI Q+++ V + IP + L +++ P E
Sbjct: 424 CPGLVMPSFVSTKAEMICNGILPIDQMRDHVPPVSLVCQNIPRRVLEVTYGINIIKPR-E 482
Query: 1683 DPSAEHPWCAWDICEAWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
D P + ++ A+ RG+ TA G+ D R+A + + G+L C P
Sbjct: 483 DEDPYRPPTSEELLTAYGCMRGFMTAH-GQPDQPRSARYILKDYVGGKLLYCHPP 536
Score = 71.6 bits (174), Expect = 2e-12
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Frame = +3
Query: 666 LDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKL--SYFEHNLETWRQLWRV 839
L PRRP W+ + S E+L E+ +F ++ ++ +KL + FE NL+ WRQLWRV
Sbjct: 111 LCIPRRPNWDRKTSPEELKQAEKDNFLKWRRQLVRLEEEQKLILTPFERNLDFWRQLWRV 170
Query: 840 LEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLAL--VLVLNKVDLAPPALVVAWKHYF 1013
+E SDIV+ I D R+P++ L YV E+ A V+++NK DL AW +F
Sbjct: 171 IERSDIVVQIVDARNPLLFRCEDLECYVK-EIDAAKENVILINKADLLTAEQRFAWAVHF 229
Query: 1014 HQ 1019
+
Sbjct: 230 EK 231
>ref|NP_663527.2| nucleolar GTP-binding protein 2 [Mus musculus].
Length = 728
Score = 69.3 bits (168), Expect = 9e-12
Identities = 41/132 (31%), Positives = 68/132 (51%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+++G +G+PNVGKSS+IN L +KV +V+ G T+ +Q L + L DCPG+++PS
Sbjct: 311 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSE 370
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
VL G+ + +I+ P +G + L + E S + +W+ E
Sbjct: 371 DSETDIVLKGVVQVEKIKAPQDHIGAV-----------LERAKPEYISKTYKIESWENAE 419
Query: 1728 AWAEKRGYKTAK 1763
+ EK +T K
Sbjct: 420 DFLEKLALRTGK 431
>ref|NP_001162071.1| guanine nucleotide-binding protein-like 3-like protein [Mus
musculus].
Length = 577
Score = 60.1 bits (144), Expect = 6e-09
Identities = 32/98 (32%), Positives = 51/98 (52%)
Frame = +3
Query: 1362 GVVTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFP 1541
G + +G VG PNVGKSSLIN L + SV PG T++ Q +L ++L D PG++ P
Sbjct: 245 GHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLDKFIRLLDAPGIV-P 303
Query: 1542 SLLPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQAL 1655
+L + ++ +P T V + R ++ +
Sbjct: 304 GPNSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEI 341
>ref|NP_932778.1| guanine nucleotide-binding protein-like 3-like protein [Mus
musculus].
Length = 577
Score = 60.1 bits (144), Expect = 6e-09
Identities = 32/98 (32%), Positives = 51/98 (52%)
Frame = +3
Query: 1362 GVVTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFP 1541
G + +G VG PNVGKSSLIN L + SV PG T++ Q +L ++L D PG++ P
Sbjct: 245 GHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLDKFIRLLDAPGIV-P 303
Query: 1542 SLLPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQAL 1655
+L + ++ +P T V + R ++ +
Sbjct: 304 GPNSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEI 341
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,556,403
Number of extensions: 1694065
Number of successful extensions: 8457
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8389
Number of HSP's successfully gapped: 6
Length of query: 616
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 509
Effective length of database: 12,403,707
Effective search space: 6313486863
Effective search space used: 6313486863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013569
(1848 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005266.2| guanine nucleotide-binding protein-like 1 [Homo... 942 0.0
Alignment gi|NP_060855.2| large subunit GTPase 1 homolog [Homo sapiens]. 117 5e-26
Alignment gi|NP_037417.1| nucleolar GTP-binding protein 2 [Homo sapiens]. 71 3e-12
Alignment gi|NP_001171748.1| guanine nucleotide-binding protein-like 3-li... 60 9e-09
Alignment gi|NP_061940.1| guanine nucleotide-binding protein-like 3-like ... 60 9e-09
>ref|NP_005266.2| guanine nucleotide-binding protein-like 1 [Homo sapiens].
Length = 607
Score = 942 bits (2435), Expect = 0.0
Identities = 463/520 (89%), Positives = 470/520 (90%)
Frame = +3
Query: 288 MPRXXXXXXXXXXXQLQDKRERKRGLQDGLXXXXXXXXXXXXXXXXQTDTSDGESVTHHI 467
MPR QLQDKRERKRGLQDGL QTDTSDGESVTHHI
Sbjct: 1 MPRKKPFSVKQKKKQLQDKRERKRGLQDGLRSSSNSRSGSRERREEQTDTSDGESVTHHI 60
Query: 468 RRLNQQPSQGLGPRGYDPNRYRLHFERDSXXXXXXXXXXXXXQVLQPVSAELLELDIQEV 647
RRLNQQPSQGLGPRGYDPNRYRLHFERDS QVLQPVSAELLELDI+EV
Sbjct: 61 RRLNQQPSQGLGPRGYDPNRYRLHFERDSREEVERRKRAAREQVLQPVSAELLELDIREV 120
Query: 648 YQPGSVLDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKLSYFEHNLETWRQ 827
YQPGSVLDFPRRPPW+YEMSKEQLMSQEERSFQ+YLGKIHGAY+SEKLSYFEHNLETWRQ
Sbjct: 121 YQPGSVLDFPRRPPWSYEMSKEQLMSQEERSFQDYLGKIHGAYSSEKLSYFEHNLETWRQ 180
Query: 828 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 1007
LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH
Sbjct: 181 LWRVLEMSDIVLLITDIRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAPPALVVAWKH 240
Query: 1008 YFHQHYPQLHIVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITAG 1187
YFHQHYPQLH+VLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAIT G
Sbjct: 241 YFHQHYPQLHVVLFTSFPRDPRTPQDPSSVLKKSRRRGRGWTRALGPEQLLRACEAITVG 300
Query: 1188 KVDLSSWREKIARDVAGATWGNGSGXXXXXXDGPAVLVEQQTDSAMEPTGPTRERYKDGV 1367
KVDLSSWREKIARDVAGATWGNGSG DGPAVLVEQQTDSAMEPTGPT+ERYKDGV
Sbjct: 301 KVDLSSWREKIARDVAGATWGNGSGEEEEEEDGPAVLVEQQTDSAMEPTGPTQERYKDGV 360
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL
Sbjct: 361 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 420
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE
Sbjct: 421 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 480
Query: 1728 AWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
AWAEKRGYKTAKA RNDVYRAANSL LA+DGRLSLCFHP
Sbjct: 481 AWAEKRGYKTAKAARNDVYRAANSLLRLAVDGRLSLCFHP 520
>ref|NP_060855.2| large subunit GTPase 1 homolog [Homo sapiens].
Length = 658
Score = 117 bits (292), Expect = 5e-26
Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Frame = +3
Query: 1341 TRERYKDGVVTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCD 1520
T + KDG +T+G VG+PNVGKSS IN ++G K VSVS TPGHT++FQT ++ P + LCD
Sbjct: 378 TGRKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHFQTLYVEPGLCLCD 437
Query: 1521 CPGLIFPSLLPRQLQV-LAGIYPIAQIQEPYTAVGYLASRIPVQAL-----LHLRHPEAE 1682
CPGL+ PS + + ++ +GI PI Q+++ V + IP L +++ P E
Sbjct: 438 CPGLVMPSFVSTKAEMTCSGILPIDQMRDHVPPVSLVCQNIPRHVLEATYGINIITPR-E 496
Query: 1683 DPSAEHPWCAWDICEAWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
D P + ++ A+ RG+ TA G+ D R+A + + G+L C P
Sbjct: 497 DEDPHRPPTSEELLTAYGYMRGFMTAH-GQPDQPRSARYILKDYVSGKLLYCHPP 550
Score = 75.5 bits (184), Expect = 2e-13
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Frame = +3
Query: 666 LDFPRRPPWNYEMSKEQLMSQEERSFQEYLGKIHGAYTSEKL--SYFEHNLETWRQLWRV 839
L PRRP WN + E+L E+ +F E+ ++ +KL + FE NL+ WRQLWRV
Sbjct: 111 LCIPRRPNWNQNTTPEELKQAEKDNFLEWRRQLVRLEEEQKLILTPFERNLDFWRQLWRV 170
Query: 840 LEMSDIVLLITDIRHPVVNFPPALYEYVTG-ELGLALVLVLNKVDLAPPALVVAWKHYFH 1016
+E SDIV+ I D R+P++ L YV + V+++NK DL AW YF
Sbjct: 171 IERSDIVVQIVDARNPLLFRCEDLECYVKEMDANKENVILINKADLLTAEQRSAWAMYFE 230
Query: 1017 Q 1019
+
Sbjct: 231 K 231
>ref|NP_037417.1| nucleolar GTP-binding protein 2 [Homo sapiens].
Length = 731
Score = 71.2 bits (173), Expect = 3e-12
Identities = 41/132 (31%), Positives = 69/132 (52%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+++G +G+PNVGKSS+IN L +KV +V+ G T+ +Q L + L DCPG+++PS
Sbjct: 311 ISVGFIGYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSE 370
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
VL G+ + +I+ P +G + L + E S + +W+ E
Sbjct: 371 DSETDIVLKGVVQVEKIKSPEDHIGAV-----------LERAKPEYISKTYKIDSWENAE 419
Query: 1728 AWAEKRGYKTAK 1763
+ EK ++T K
Sbjct: 420 DFLEKLAFRTGK 431
>ref|NP_001171748.1| guanine nucleotide-binding protein-like 3-like protein [Homo
sapiens].
Length = 582
Score = 59.7 bits (143), Expect = 9e-09
Identities = 45/160 (28%), Positives = 75/160 (46%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+ +G VG PNVGKSSLIN L + SV PG T++ Q +L ++L D PG++ P
Sbjct: 253 IRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLDKFIRLLDAPGIV-PGP 311
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
+L + ++ +P T V + R ++ + + + + + EH
Sbjct: 312 NSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISNY-YGVSGFQTTEH------FLT 364
Query: 1728 AWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
A A + G K K G +AA ++ A + G++S P
Sbjct: 365 AVAHRLG-KKKKGGLYSQEQAAKAVLADWVSGKISFYIPP 403
>ref|NP_061940.1| guanine nucleotide-binding protein-like 3-like protein [Homo
sapiens].
Length = 582
Score = 59.7 bits (143), Expect = 9e-09
Identities = 45/160 (28%), Positives = 75/160 (46%)
Frame = +3
Query: 1368 VTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL 1547
+ +G VG PNVGKSSLIN L + SV PG T++ Q +L ++L D PG++ P
Sbjct: 253 IRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLDKFIRLLDAPGIV-PGP 311
Query: 1548 LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICE 1727
+L + ++ +P T V + R ++ + + + + + EH
Sbjct: 312 NSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISNY-YGVSGFQTTEH------FLT 364
Query: 1728 AWAEKRGYKTAKAGRNDVYRAANSLPALALDGRLSLCFHP 1847
A A + G K K G +AA ++ A + G++S P
Sbjct: 365 AVAHRLG-KKKKGGLYSQEQAAKAVLADWVSGKISFYIPP 403
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,287,022
Number of extensions: 2071614
Number of successful extensions: 10830
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10742
Number of HSP's successfully gapped: 6
Length of query: 616
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 507
Effective length of database: 14,704,088
Effective search space: 7454972616
Effective search space used: 7454972616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013569
(1848 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 708 0.0
gb|GL895966.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 412 e-112
>Sscrofa_Chr07
|| Length = 134764511
Score = 708 bits (357), Expect = 0.0
Identities = 360/361 (99%)
Strand = Plus / Minus
Query: 1 cctttctcgcggctgctgagccctgtcggtgccactggctcttacatgctggtagcccac 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 26782290 cctttctcgcggctgctgagccctgtccgtgccactggctcttacatgctggtagcccac 26782231
Query: 61 ctctcatcattctcttgcctcgctcccagtggaaagtgactgtattttcccctggtcgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26782230 ctctcatcattctcttgcctcgctcccagtggaaagtgactgtattttcccctggtcgtc 26782171
Query: 121 ttccaccccggccgcgggggcgcatcggccaggcccgcccgctgacgtcaccttccagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26782170 ttccaccccggccgcgggggcgcatcggccaggcccgcccgctgacgtcaccttccagcc 26782111
Query: 181 ccgccccctccagggtcccgggcccctgcgaccggggctgccccggggggagtcagttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26782110 ccgccccctccagggtcccgggcccctgcgaccggggctgccccggggggagtcagttga 26782051
Query: 241 agcggctggagctcggcggagggcgggccaggtgactggtccgggccatgccgaggaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26782050 agcggctggagctcggcggagggcgggccaggtgactggtccgggccatgccgaggaaga 26781991
Query: 301 agcctttcagcgtgaagcagaagaagaagcagttgcaggacaagcgggagcggaagcgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26781990 agcctttcagcgtgaagcagaagaagaagcagttgcaggacaagcgggagcggaagcgag 26781931
Query: 361 g 361
|
Sbjct: 26781930 g 26781930
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Minus
Query: 888 gttgtgaatttcccaccagcactttatgagtacgtgactggagagcttgggctggccttg 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26779106 gttgtgaatttcccaccagcactttatgagtacgtgactggagagcttgggctggccttg 26779047
Query: 948 gtgctggtcctgaacaaggtggatctggccccgccagctctcgtagttgcctggaagcat 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26779046 gtgctggtcctgaacaaggtggatctggccccgccagctctcgtagttgcctggaagcat 26778987
Query: 1008 tatttccaccagcactatccccagctccacattgtccttttcacctcttttcctcgggac 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26778986 tatttccaccagcactatccccagctccacattgtccttttcacctcttttcctcgggac 26778927
Query: 1068 ccccgcacaccgcaggatcctagcagcg 1095
||||||||||||||||||||||||||||
Sbjct: 26778926 ccccgcacaccgcaggatcctagcagcg 26778899
Score = 387 bits (195), Expect = e-104
Identities = 198/199 (99%)
Strand = Plus / Minus
Query: 1190 agtggacctgagcagctggcgggagaagattgcccgggatgtggccggggccacctgggg 1249
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 26778297 agtggacctgagcagctggcgggagaagattgcccgggatgtggcaggggccacctgggg 26778238
Query: 1250 taatggctccggggaggaggaggaagaggaggacgggccggccgtcctggtggagcagca 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26778237 taatggctccggggaggaggaggaagaggaggacgggccggccgtcctggtggagcagca 26778178
Query: 1310 gactgactcggcgatggagcccacgggcccaacgcgggagcgctacaaggacggggtggt 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26778177 gactgactcggcgatggagcccacgggcccaacgcgggagcgctacaaggacggggtggt 26778118
Query: 1370 gaccatcggctgtgtgggt 1388
|||||||||||||||||||
Sbjct: 26778117 gaccatcggctgtgtgggt 26778099
Score = 361 bits (182), Expect = 9e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 1386 ggtttccccaatgtgggcaagtcgtcacttatcaacgggctggtggggcggaaggtcgtg 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26773825 ggtttccccaatgtgggcaagtcgtcacttatcaacgggctggtggggcggaaggtcgtg 26773766
Query: 1446 agtgtctccagaaccccgggccacacccgctactttcagacctactttctcaccccctcg 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26773765 agtgtctccagaaccccgggccacacccgctactttcagacctactttctcaccccctcg 26773706
Query: 1506 gtgaagctctgtgattgtccaggcctcatattcccctcccttctgcccaggcagctgcag 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26773705 gtgaagctctgtgattgtccaggcctcatattcccctcccttctgcccaggcagctgcag 26773646
Query: 1566 gt 1567
||
Sbjct: 26773645 gt 26773644
Score = 337 bits (170), Expect = 1e-89
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 359 agggcttcaagatgggctgcgatccagttccaacagccgcagcgggagccgggagcggcg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26781514 agggcttcaagatgggctgcgatccagttccaacagccgcagcgggagccgggagcggcg 26781455
Query: 419 ggaggagcagactgacacctcggacggggaatctgtgacccatcacatccgcaggctcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26781454 ggaggagcagactgacacctcggacggggaatctgtgacccatcacatccgcaggctcaa 26781395
Query: 479 ccagcagccttcccaggggctgggcccgcgtggctatgacccaaatcggt 528
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26781394 ccagcagccttcccaggggctgggcccgcgtggctatgacccaaatcggt 26781345
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1563 caggtcctggcggggatctaccccattgcccaaatccaggagccctacaccgccgtgggc 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26773573 caggtcctggcggggatctaccccattgcccaaatccaggagccctacaccgccgtgggc 26773514
Query: 1623 tacctggcctcccgaatccctgtgcaggccctgctccacctgcgccacccagaggctgag 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26773513 tacctggcctcccgaatccctgtgcaggccctgctccacctgcgccacccagaggctgag 26773454
Query: 1683 gacccctctgcagaacacccctggtgtgcctgggacatctgtgaag 1728
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26773453 gacccctctgcagaacacccctggtgtgcctgggacatctgtgaag 26773408
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 663 gttctggactttccccgacgtcctccttggaactatgaaatgtccaaggagcaactgatg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26780675 gttctggactttccccgacgtcctccttggaactatgaaatgtccaaggagcaactgatg 26780616
Query: 723 agccaggaggaacggagcttccaggagtatcttgggaagattcatggggcttatacctct 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26780615 agccaggaggaacggagcttccaggagtatcttgggaagattcatggggcttatacctct 26780556
Query: 783 gagaaactcagttactttgagcacaatctggag 815
|||||||||||||||||||||||||||||||||
Sbjct: 26780555 gagaaactcagttactttgagcacaatctggag 26780523
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 526 ggtatcggctgcattttgagcgagacagccgagaggaggtggagaggagaaagagagcgg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26780973 ggtatcggctgcattttgagcgagacagccgagaggaggtggagaggagaaagagagcgg 26780914
Query: 586 cccgggagcaagtgctgcagcccgtgagtgctgagctgctggagctggacatccaggaag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26780913 cccgggagcaagtgctgcagcccgtgagtgctgagctgctggagctggacatccaggaag 26780854
Query: 646 tctatcagcctgggtctg 663
||||||||||||||||||
Sbjct: 26780853 tctatcagcctgggtctg 26780836
Score = 204 bits (103), Expect = 1e-49
Identities = 120/123 (97%), Gaps = 2/123 (1%)
Strand = Plus / Minus
Query: 1727 agcctgggcagagaaacgtggttacaagacagccaaggcgggccggaacgatgtgtacag 1786
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 26773184 agcctgggcagagaaacgtggttacaagacagccaaggcggcccggaacgatgtgtacag 26773125
Query: 1787 agcggccaacagcctccctgc-gctggcgctagatggccgcctcagcctgtgctttcacc 1845
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 26773124 agcggccaacagcct-cctgcggctggcgctagatggccgcctcagcctgtgctttcacc 26773066
Query: 1846 ccc 1848
|||
Sbjct: 26773065 ccc 26773063
Score = 192 bits (97), Expect = 5e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 1095 gtcttgaagaagagtcggaggcgggggaggggatggactcgggccctggggccggagcag 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26778755 gtcttgaagaagagtcggaggcgggggaggggatggactcgggccctggggccggagcag 26778696
Query: 1155 ctgctgagagcctgtgaggccatcactgcggggaaag 1191
|||||||||||||||||||||||||||||||||||||
Sbjct: 26778695 ctgctgagagcctgtgaggccatcactgcggggaaag 26778659
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 814 agacatggaggcagctgtggcgagtgttagagatgtctgacattgtcctgctaattactg 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26780407 agacatggaggcagctgtggcgagtgttagagatgtctgacattgtcctgctaattactg 26780348
Query: 874 atatccgacatccagt 889
||||||||||||||||
Sbjct: 26780347 atatccgacatccagt 26780332
>gb|GL895966.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4479
Length = 20217
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 888 gttgtgaatttcccaccagcactttatgagtacgtgactggagagcttgggctggccttg 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6650 gttgtgaatttcccaccagcactttatgagtacgtgactggagagcttgggctggccttg 6709
Query: 948 gtgctggtcctgaacaaggtggatctggccccgccagctctcgtagttgcctggaagcat 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6710 gtgctggtcctgaacaaggtggatctggccccgccagctctcgtagttgcctggaagcat 6769
Query: 1008 tatttccaccagcactatccccagctccacattgtccttttcacctcttttcctcgggac 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6770 tatttccaccagcactatccccagctccacattgtccttttcacctcttttcctcgggac 6829
Query: 1068 ccccgcacaccgcaggatcctagcagcg 1095
||||||||||||||||||||||||||||
Sbjct: 6830 ccccgcacaccgcaggatcctagcagcg 6857
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 1190 agtggacctgagcagctggcgggagaagattgcccgggatgtggccggggccacctgggg 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7546 agtggacctgagcagctggcgggagaagattgcccgggatgtggccggggccacctgggg 7605
Query: 1250 taatggctccggggaggaggaggaagaggaggacgggccggccgtcctggtggagcagca 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 taatggctccggggaggaggaggaagaggaggacgggccggccgtcctggtggagcagca 7665
Query: 1310 gactgactcggcgatggagcccacgggcccaacgcgggagcgctacaaggacggggtggt 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666 gactgactcggcgatggagcccacgggcccaacgcgggagcgctacaaggacggggtggt 7725
Query: 1370 gaccatcggctgtgtgggt 1388
|||||||||||||||||||
Sbjct: 7726 gaccatcggctgtgtgggt 7744
Score = 361 bits (182), Expect = 9e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 1386 ggtttccccaatgtgggcaagtcgtcacttatcaacgggctggtggggcggaaggtcgtg 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11826 ggtttccccaatgtgggcaagtcgtcacttatcaacgggctggtggggcggaaggtcgtg 11885
Query: 1446 agtgtctccagaaccccgggccacacccgctactttcagacctactttctcaccccctcg 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11886 agtgtctccagaaccccgggccacacccgctactttcagacctactttctcaccccctcg 11945
Query: 1506 gtgaagctctgtgattgtccaggcctcatattcccctcccttctgcccaggcagctgcag 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11946 gtgaagctctgtgattgtccaggcctcatattcccctcccttctgcccaggcagctgcag 12005
Query: 1566 gt 1567
||
Sbjct: 12006 gt 12007
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 663 gttctggactttccccgacgtcctccttggaactatgaaatgtccaaggagcaactgatg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 gttctggactttccccgacgtcctccttggaactatgaaatgtccaaggagcaactgatg 5057
Query: 723 agccaggaggaacggagcttccaggagtatcttgggaagattcatggggcttatacctct 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 agccaggaggaacggagcttccaggagtatcttgggaagattcatggggcttatacctct 5117
Query: 783 gagaaactcagttactttgagcacaatctggag 815
|||||||||||||||||||||||||||||||||
Sbjct: 5118 gagaaactcagttactttgagcacaatctggag 5150
Score = 192 bits (97), Expect = 5e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1095 gtcttgaagaagagtcggaggcgggggaggggatggactcgggccctggggccggagcag 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7001 gtcttgaagaagagtcggaggcgggggaggggatggactcgggccctggggccggagcag 7060
Query: 1155 ctgctgagagcctgtgaggccatcactgcggggaaag 1191
|||||||||||||||||||||||||||||||||||||
Sbjct: 7061 ctgctgagagcctgtgaggccatcactgcggggaaag 7097
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 274 gactggtccgggccatgccgaggaagaagcctttcagcgtgaagcagaagaagaagcagt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3542 gactggtccgggccatgccgaggaagaagcctttcagcgtgaagcagaagaagaagcagt 3601
Query: 334 tgcaggacaagcgggagcggaagcgagg 361
||||||||||||||||||||||||||||
Sbjct: 3602 tgcaggacaagcgggagcggaagcgagg 3629
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1641 cctgtgcaggccctgctccacctgcgccacccagaggctgaggacccctctgcagaacac 1700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12193 cctgtgcaggccctgctccacctgcgccacccagaggctgaggacccctctgcagaacac 12252
Query: 1701 ccctggtgtgcctgggacatctgtgaag 1728
||||||||||||||||||||||||||||
Sbjct: 12253 ccctggtgtgcctgggacatctgtgaag 12280
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 814 agacatggaggcagctgtggcgagtgttagagatgtctgacattgtcctgctaattactg 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5349 agacatggaggcagctgtggcgagtgttagagatgtctgacattgtcctgctaattactg 5408
Query: 874 atatccgacatccagt 889
||||||||||||||||
Sbjct: 5409 atatccgacatccagt 5424
Score = 145 bits (73), Expect = 1e-31
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1727 agcctgggcagagaaacgtggttacaagacagccaaggcgggccggaacgatgtgtacag 1786
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12504 agcctgggcagagaaacgtggttacaagacagccaaggcggcccggaacgatgtgtacag 12563
Query: 1787 agcggccaacagcctcc 1803
|||||||||||||||||
Sbjct: 12564 agcggccaacagcctcc 12580
Score = 135 bits (68), Expect = 1e-28
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 90 tggaaagtgactgtattttcccctggtcgtcttccaccccggccgcgggggcgcatcggc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3370 tggaaagtgactgtattttcccctggtcgtcttccaccccggccgcgggggcgcatcggc 3429
Query: 150 caggcccg 157
||||||||
Sbjct: 3430 caggcccg 3437
Score = 119 bits (60), Expect = 6e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 461 tcacatccgcaggctcaaccagcagccttcccaggggctgggcccgcgtggctatgaccc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4234 tcacatccgcaggctcaaccagcagccttcccaggggctgggcccgcgtggctatgaccc 4293
Score = 105 bits (53), Expect = 9e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 611 gagtgctgagctgctggagctggacatccaggaagtctatcagcctgggtctg 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4785 gagtgctgagctgctggagctggacatccaggaagtctatcagcctgggtctg 4837
Score = 99.6 bits (50), Expect = 5e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 371 tgggctgcgatccagttccaacagccgcagcgggagccgggagcggcggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4077 tgggctgcgatccagttccaacagccgcagcgggagccgggagcggcggg 4126
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 cctttctcgcggctgctgagccctgtcggtgccactgg 38
||||||||||||||||||||||||||| ||||||||||
Sbjct: 3232 cctttctcgcggctgctgagccctgtccgtgccactgg 3269
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,928,432
Number of extensions: 1119
Number of successful extensions: 1119
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1118
Number of HSP's successfully gapped: 25
Length of query: 1848
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1826
Effective length of database: 2,808,408,574
Effective search space: 5128154056124
Effective search space used: 5128154056124
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)