Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013573
(1519 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096814.1| ubiquitin-associated domain-containing prote... 572 e-163
>ref|NP_001096814.1| ubiquitin-associated domain-containing protein 2 [Bos taurus].
Length = 345
Score = 572 bits (1473), Expect = e-163
Identities = 281/309 (90%), Positives = 295/309 (95%)
Frame = +2
Query: 191 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 370
HCQRFFVYDLQAVKD+FQIWRLI GRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF
Sbjct: 36 HCQRFFVYDLQAVKDDFQIWRLISGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 95
Query: 371 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 550
LLGSWVLS VGDFILVEAV+YSFG+T ARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG
Sbjct: 96 LLGSWVLSVVGDFILVEAVRYSFGVTMARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 155
Query: 551 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCS 730
PLSITNKTLIYILGLQLFTSGSYIWIVAISGL SGICYNS+ LQ+H VL VPSWMAKFC+
Sbjct: 156 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLASGICYNSRTLQVHRVLYVPSWMAKFCA 215
Query: 731 WALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINW 910
W LEP+FSSSEPT+EAR+GMGATVDIQRQQRMELLDRQL L+QFA RRQRQQQGGMINW
Sbjct: 216 WTLEPLFSSSEPTSEARVGMGATVDIQRQQRMELLDRQLMLSQFAQVRRQRQQQGGMINW 275
Query: 911 NRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 1090
+RLFPPLRQRRNVNYQDGR++E ASPPLEV EEQVARLMEMGFSRGDALEALRASNNDL
Sbjct: 276 DRLFPPLRQRRNVNYQDGRQAEQPASPPLEVPEEQVARLMEMGFSRGDALEALRASNNDL 335
Query: 1091 NVATNFLLQ 1117
NVAT+FLLQ
Sbjct: 336 NVATHFLLQ 344
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,954,525
Number of extensions: 1618918
Number of successful extensions: 6401
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6394
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 399
Effective length of database: 14,140,958
Effective search space: 5642242242
Effective search space used: 5642242242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013573
(1519 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860071.1| PREDICTED: hypothetical protein XP_854978 isofo... 562 e-160
Alignment gi|XP_859956.1| PREDICTED: hypothetical protein XP_854863 isofo... 562 e-160
Alignment gi|XP_849884.1| PREDICTED: hypothetical protein XP_844791 isofo... 556 e-158
Alignment gi|XP_859996.1| PREDICTED: hypothetical protein XP_854903 isofo... 282 5e-76
>ref|XP_860071.1| PREDICTED: hypothetical protein XP_854978 isoform 4 [Canis
familiaris].
Length = 345
Score = 562 bits (1448), Expect = e-160
Identities = 277/309 (89%), Positives = 290/309 (93%)
Frame = +2
Query: 191 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 370
HCQRFFVYDLQAVK++ QIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF
Sbjct: 36 HCQRFFVYDLQAVKEDLQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 95
Query: 371 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 550
LLGSWVLSA+ D ILVEA+ Y FGI A NLPSGFLAPVFALFVPFYCSIPR+QVA ILG
Sbjct: 96 LLGSWVLSALVDLILVEAMWYFFGIATAGNLPSGFLAPVFALFVPFYCSIPRIQVAQILG 155
Query: 551 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCS 730
PLSITNKTLIYILGLQLFTSGSYIWIVAISGL+SGICYNS+V Q+ +VLC+P WMAKF S
Sbjct: 156 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLISGICYNSKVFQLQQVLCIPRWMAKFFS 215
Query: 731 WALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINW 910
W LEPIFSS EPTTEARIGMGATVDIQRQQRMELLDRQL L+QFA RRQRQQQGGMINW
Sbjct: 216 WTLEPIFSSPEPTTEARIGMGATVDIQRQQRMELLDRQLMLSQFAQVRRQRQQQGGMINW 275
Query: 911 NRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 1090
NRLFPPLRQRRN+NYQDGR+SE QASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL
Sbjct: 276 NRLFPPLRQRRNINYQDGRQSEQQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 335
Query: 1091 NVATNFLLQ 1117
NVATNFLLQ
Sbjct: 336 NVATNFLLQ 344
>ref|XP_859956.1| PREDICTED: hypothetical protein XP_854863 isoform 2 [Canis
familiaris].
Length = 345
Score = 562 bits (1448), Expect = e-160
Identities = 277/309 (89%), Positives = 290/309 (93%)
Frame = +2
Query: 191 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 370
HCQRFFVYDLQAVK++ QIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF
Sbjct: 36 HCQRFFVYDLQAVKEDLQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 95
Query: 371 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 550
LLGSWVLSA+ D ILVEA+ Y FGI A NLPSGFLAPVFALFVPFYCSIPR+QVA ILG
Sbjct: 96 LLGSWVLSALVDLILVEAMWYFFGIATAGNLPSGFLAPVFALFVPFYCSIPRIQVAQILG 155
Query: 551 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCS 730
PLSITNKTLIYILGLQLFTSGSYIWIVAISGL+SGICYNS+V Q+ +VLC+P WMAKF S
Sbjct: 156 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLISGICYNSKVFQLQQVLCIPRWMAKFFS 215
Query: 731 WALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINW 910
W LEPIFSS EPTTEARIGMGATVDIQRQQRMELLDRQL L+QFA RRQRQQQGGMINW
Sbjct: 216 WTLEPIFSSPEPTTEARIGMGATVDIQRQQRMELLDRQLMLSQFAQVRRQRQQQGGMINW 275
Query: 911 NRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 1090
NRLFPPLRQRRN+NYQDGR+SE QASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL
Sbjct: 276 NRLFPPLRQRRNINYQDGRQSEQQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 335
Query: 1091 NVATNFLLQ 1117
NVATNFLLQ
Sbjct: 336 NVATNFLLQ 344
>ref|XP_849884.1| PREDICTED: hypothetical protein XP_844791 isoform 1 [Canis
familiaris].
Length = 347
Score = 556 bits (1432), Expect = e-158
Identities = 276/311 (88%), Positives = 290/311 (93%), Gaps = 2/311 (0%)
Frame = +2
Query: 191 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 370
HCQRFFVYDLQAVK++ QIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF
Sbjct: 36 HCQRFFVYDLQAVKEDLQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 95
Query: 371 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 550
LLGSWVLSA+ D ILVEA+ Y FGI A NLPSGFLAPVFALFVPFYCSIPR+QVA ILG
Sbjct: 96 LLGSWVLSALVDLILVEAMWYFFGIATAGNLPSGFLAPVFALFVPFYCSIPRIQVAQILG 155
Query: 551 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCS 730
PLSITNKTLIYILGLQLFTSGSYIWIVAISGL+SGICYNS+V Q+ +VLC+P WMAKF S
Sbjct: 156 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLISGICYNSKVFQLQQVLCIPRWMAKFFS 215
Query: 731 WALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQ--QGGMI 904
W LEPIFSS EPTTEARIGMGATVDIQRQQRMELLDRQL L+QFA RRQRQQ +GGMI
Sbjct: 216 WTLEPIFSSPEPTTEARIGMGATVDIQRQQRMELLDRQLMLSQFAQVRRQRQQPSEGGMI 275
Query: 905 NWNRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNN 1084
NWNRLFPPLRQRRN+NYQDGR+SE QASPPLEVSEEQVARLMEMGFSRGDALEALRASNN
Sbjct: 276 NWNRLFPPLRQRRNINYQDGRQSEQQASPPLEVSEEQVARLMEMGFSRGDALEALRASNN 335
Query: 1085 DLNVATNFLLQ 1117
DLNVATNFLLQ
Sbjct: 336 DLNVATNFLLQ 346
>ref|XP_859996.1| PREDICTED: hypothetical protein XP_854903 isoform 3 [Canis
familiaris].
Length = 263
Score = 282 bits (722), Expect = 5e-76
Identities = 140/159 (88%), Positives = 146/159 (91%)
Frame = +2
Query: 191 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 370
HCQRFFVYDLQAVK++ QIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF
Sbjct: 36 HCQRFFVYDLQAVKEDLQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 95
Query: 371 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 550
LLGSWVLSA+ D ILVEA+ Y FGI A NLPSGFLAPVFALFVPFYCSIPR+QVA ILG
Sbjct: 96 LLGSWVLSALVDLILVEAMWYFFGIATAGNLPSGFLAPVFALFVPFYCSIPRIQVAQILG 155
Query: 551 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYN 667
PLSITNKTLIYILGLQLFTSGSYIWIVAISGL I +N
Sbjct: 156 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLGGMINWN 194
Score = 148 bits (374), Expect = 1e-35
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = +2
Query: 893 GGMINWNRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALR 1072
GGMINWNRLFPPLRQRRN+NYQDGR+SE QASPPLEVSEEQVARLMEMGFSRGDALEALR
Sbjct: 188 GGMINWNRLFPPLRQRRNINYQDGRQSEQQASPPLEVSEEQVARLMEMGFSRGDALEALR 247
Query: 1073 ASNNDLNVATNFLLQ 1117
ASNNDLNVATNFLLQ
Sbjct: 248 ASNNDLNVATNFLLQ 262
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,337,985
Number of extensions: 1662223
Number of successful extensions: 6508
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6498
Number of HSP's successfully gapped: 5
Length of query: 506
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 399
Effective length of database: 15,307,552
Effective search space: 6107713248
Effective search space used: 6107713248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013573
(1519 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131109.2| PREDICTED: ubiquitin-associated domain-conta... 369 e-102
>ref|XP_003131109.2| PREDICTED: ubiquitin-associated domain-containing protein 2-like [Sus
scrofa].
Length = 394
Score = 369 bits (947), Expect = e-102
Identities = 222/364 (60%), Positives = 241/364 (66%), Gaps = 54/364 (14%)
Frame = +2
Query: 191 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 370
HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF
Sbjct: 36 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 95
Query: 371 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAH--- 541
LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAH
Sbjct: 96 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 155
Query: 542 -----------ILGPLSITNKTLIYIL---GLQLFTS------------GSYIWIVAISG 643
ILG T+ + I+I+ GL F S GS ++
Sbjct: 156 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLFRFFSRWMSAREDGELHGSTHQTARLAL 215
Query: 644 LVSGIC-------------------YNSQVLQMHEV-LCVPSWMAKFCSWALEPIFSSSE 763
L G C + S+ Q E+ +CVP ++ + + S
Sbjct: 216 LPRGSCQGPEAPGELFTERTLPEQIFCSRTCQSLEIYVCVPIYITSTVIVCDDSLIS--- 272
Query: 764 PTTEARIGMGATVDIQRQQRMELLDRQLT-----LAQFAHSRRQRQQQGGMINWNRLFPP 928
P RI ++ + L L +A F +GGMINWNRLFPP
Sbjct: 273 PFPSCRIFSMTGLEFAKAFTCPALVNPLEPFSKLMANFYFFLSF--SKGGMINWNRLFPP 330
Query: 929 LRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNF 1108
LRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNF
Sbjct: 331 LRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNF 390
Query: 1109 LLQQ 1120
LLQQ
Sbjct: 391 LLQQ 394
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,372,850
Number of extensions: 1040840
Number of successful extensions: 4108
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4102
Number of HSP's successfully gapped: 2
Length of query: 506
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 403
Effective length of database: 8,779,541
Effective search space: 3538155023
Effective search space used: 3538155023
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013573
(1519 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081137.2| ubiquitin-associated domain-containing protein ... 544 e-155
>ref|NP_081137.2| ubiquitin-associated domain-containing protein 2 precursor [Mus
musculus].
Length = 345
Score = 544 bits (1402), Expect = e-155
Identities = 269/309 (87%), Positives = 288/309 (93%)
Frame = +2
Query: 191 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 370
HCQ+FFVYDL AVK + QIWRLICGRIICLDLKD FCS LLIYNFRIFERRYGSRKFASF
Sbjct: 36 HCQKFFVYDLHAVKHDLQIWRLICGRIICLDLKDAFCSGLLIYNFRIFERRYGSRKFASF 95
Query: 371 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 550
LLGSWVLSA+ DFILVEAVQYS G+T A NLPSGFLAPVFALFVPF+CSIPRVQVA ILG
Sbjct: 96 LLGSWVLSALFDFILVEAVQYSLGVTVASNLPSGFLAPVFALFVPFHCSIPRVQVAQILG 155
Query: 551 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCS 730
PLSITNKTLIYILGLQLFTSGSYIWIVA+SGL+SG+CY+ +VLQ+H+VL +P MA+F S
Sbjct: 156 PLSITNKTLIYILGLQLFTSGSYIWIVAMSGLISGMCYDRKVLQVHQVLRIPGRMAEFFS 215
Query: 731 WALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINW 910
WALEPIFSSSEPT+EAR+GMGATVDIQRQQRME LDRQL L+QFA RRQRQQQGGMINW
Sbjct: 216 WALEPIFSSSEPTSEARVGMGATVDIQRQQRMEQLDRQLMLSQFAQVRRQRQQQGGMINW 275
Query: 911 NRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 1090
NRLFPPLRQRRN+NYQDG RSE +ASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL
Sbjct: 276 NRLFPPLRQRRNINYQDGPRSEQRASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 335
Query: 1091 NVATNFLLQ 1117
NVATNFLLQ
Sbjct: 336 NVATNFLLQ 344
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,270,014
Number of extensions: 1375369
Number of successful extensions: 5145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5134
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 400
Effective length of database: 12,433,743
Effective search space: 4973497200
Effective search space used: 4973497200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013573
(1519 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001137544.1| ubiquitin-associated domain-containing prote... 556 e-158
Alignment gi|NP_808882.1| ubiquitin-associated domain-containing protein ... 385 e-107
>ref|NP_001137544.1| ubiquitin-associated domain-containing protein 2 isoform 1 [Homo
sapiens].
Length = 344
Score = 556 bits (1434), Expect = e-158
Identities = 273/309 (88%), Positives = 294/309 (95%)
Frame = +2
Query: 191 HCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 370
HCQ+ FVYDL AVK++FQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF
Sbjct: 36 HCQKLFVYDLHAVKNDFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASF 95
Query: 371 LLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILG 550
LLGSWVLSA+ DF+L+EA+QY FGITAA NLPSGFLAPVFALFVPFYCSIPRVQVA ILG
Sbjct: 96 LLGSWVLSALFDFLLIEAMQYFFGITAASNLPSGFLAPVFALFVPFYCSIPRVQVAQILG 155
Query: 551 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCS 730
PLSITNKTLIYILGLQLFTSGSYIWIVAISGL+SG+CY+S++ Q+H+VLC+PSWMAKF S
Sbjct: 156 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFS 215
Query: 731 WALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINW 910
W LEPIFSSSEPT+EARIGMGAT+DIQRQQRMELLDRQL +QFA RRQRQQQGGMINW
Sbjct: 216 WTLEPIFSSSEPTSEARIGMGATLDIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINW 275
Query: 911 NRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 1090
NRLFPPLRQR+NVNYQ GR+SEP A+PPLEVSEEQVARLMEMGFSRGDALEALRASNNDL
Sbjct: 276 NRLFPPLRQRQNVNYQGGRQSEP-AAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDL 334
Query: 1091 NVATNFLLQ 1117
NVATNFLLQ
Sbjct: 335 NVATNFLLQ 343
>ref|NP_808882.1| ubiquitin-associated domain-containing protein 2 isoform 2 [Homo
sapiens].
Length = 309
Score = 385 bits (988), Expect = e-107
Identities = 192/228 (84%), Positives = 210/228 (92%)
Frame = +2
Query: 434 SFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILGPLSITNKTLIYILGLQLFTSG 613
S +T ++ + LAPVFALFVPFYCSIPRVQVA ILGPLSITNKTLIYILGLQLFTSG
Sbjct: 82 SLCMTFTQSRTTSSLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSG 141
Query: 614 SYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCSWALEPIFSSSEPTTEARIGMG 793
SYIWIVAISGL+SG+CY+S++ Q+H+VLC+PSWMAKF SW LEPIFSSSEPT+EARIGMG
Sbjct: 142 SYIWIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTSEARIGMG 201
Query: 794 ATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINWNRLFPPLRQRRNVNYQDGRRS 973
AT+DIQRQQRMELLDRQL +QFA RRQRQQQGGMINWNRLFPPLRQR+NVNYQ GR+S
Sbjct: 202 ATLDIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQS 261
Query: 974 EPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 1117
EP A+PPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ
Sbjct: 262 EP-AAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 308
Score = 60.8 bits (146), Expect = 3e-09
Identities = 28/42 (66%), Positives = 28/42 (66%)
Frame = +3
Query: 117 TRHLCPRAFYWSPAPCPSCWPFSCRTVRGSLCTTSRQSRTNS 242
TR LC RAF WSP P PSC P SC T R SLC T QSRT S
Sbjct: 53 TRRLCRRAFCWSPVPSPSCSPSSCLTARSSLCMTFTQSRTTS 94
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,172,865
Number of extensions: 1633751
Number of successful extensions: 6216
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6203
Number of HSP's successfully gapped: 3
Length of query: 506
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 399
Effective length of database: 14,770,016
Effective search space: 5893236384
Effective search space used: 5893236384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013573
(1519 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 888 0.0
Sscrofa_Chr03 270 2e-69
>Sscrofa_Chr11
|| Length = 87690581
Score = 888 bits (448), Expect = 0.0
Identities = 490/507 (96%)
Strand = Plus / Plus
Query: 1013 caggttgcccggctcatggaaatgggattttccagaggtgacgctttggaagccctgaga 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75619053 caggttgcccggctcatggaaatgggattttccagaggtgacgctttggaagccctgaga 75619112
Query: 1073 gcttcaaacaatgaccttaatgtggccaccaacttcctgctgcagcagtgacgtcccagc 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75619113 gcttcaaacaatgaccttaatgtggccaccaacttcctgctgcagcagtgacgtcccagc 75619172
Query: 1133 cgacagcacagggactggccgggctgctgaccacagcgggcgccgtccccgccacgccac 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75619173 cgacagcacagggactggccgggctgctgaccacagcgggcgccgtccccgccacgccac 75619232
Query: 1193 cggaccagcccaaggacccagcaccccctggcgcaatgttctcactgtccccttgggcaa 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75619233 cggaccagcccaaggacccagcaccccctggcgcaatgttctcactgtccccttgggcaa 75619292
Query: 1253 agggtggtccccactgctccctcctttaattccaaggtcattaccattaagtatcaaaaa 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75619293 agggtggtccccactgctccctcctttaattccaaggtcattaccattaagtatcaaaaa 75619352
Query: 1313 tcagtttgccattaaagtagcatgtattttctatctttannnnnnnatggggcattttcc 1372
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 75619353 tcagtttgccattaaagtagcatgtattttctatctttatttttttatggggcattttcc 75619412
Query: 1373 ttggtttgagaaccatccctccttcctaatgtgntttaaatgcatttaaatagcagattt 1432
||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 75619413 ttgttttgagaaccatccctccttcctaatgtgttttaaatgcattaaaatagcagattt 75619472
Query: 1433 ctgcaagtggttgaatagccctcccgatgggnagtactgctactggtatatttctttgac 1492
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 75619473 ctgcaagtggttgaatagccctcccgatggaagttactgctactgtaatattcctttgac 75619532
Query: 1493 tgtagtgcatcttcgtacattatatct 1519
|||||||||||||||||||||||||||
Sbjct: 75619533 tgtagtgcatcttcgtacattatatct 75619559
Score = 490 bits (247), Expect = e-135
Identities = 247/247 (100%)
Strand = Plus / Minus
Query: 647 gtttctggcatctgctacaacagccaagtgttgcaaatgcacgaggtgctctgcgttcca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75584138 gtttctggcatctgctacaacagccaagtgttgcaaatgcacgaggtgctctgcgttcca 75584079
Query: 707 agctggatggcaaagttctgttcttgggccctcgagcccatcttctcatcttcggaaccc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75584078 agctggatggcaaagttctgttcttgggccctcgagcccatcttctcatcttcggaaccc 75584019
Query: 767 accaccgaggcccgaatcggcatgggagccacggtcgacatccagaggcagcagaggatg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75584018 accaccgaggcccgaatcggcatgggagccacggtcgacatccagaggcagcagaggatg 75583959
Query: 827 gagctgctggatcggcagctgacgctggcgcagtttgcacactcgaggcggcagaggcag 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75583958 gagctgctggatcggcagctgacgctggcgcagtttgcacactcgaggcggcagaggcag 75583899
Query: 887 caacagg 893
|||||||
Sbjct: 75583898 caacagg 75583892
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 117 acaaggcacctctgtccaagagccttttactggtccccagcgccctgtccctcttgctgg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75407183 acaaggcacctctgtccaagagccttttactggtccccagcgccctgtccctcttgctgg 75407242
Query: 177 cccttctcctgccgcactgtcagaggttctttgtgtacgacctccaggcagtcaaggacg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75407243 cccttctcctgccgcactgtcagaggttctttgtgtacgacctccaggcagtcaaggacg 75407302
Query: 237 aattccag 244
||||||||
Sbjct: 75407303 aattccag 75407310
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 890 cagggaggaatgatcaactggaatcgtcttttccctcctttacgacagcgacggaacgtc 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75458870 cagggaggaatgatcaactggaatcgtcttttccctcctttacgacagcgacggaacgtc 75458929
Query: 950 aactatcaggatggtcggcggtctgaaccacaagcgtcccctcctctagaggtttcagag 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75458930 aactatcaggatggtcggcggtctgaaccacaagcgtcccctcctctagaggtttcagag 75458989
Query: 1010 gagcaggt 1017
||||||||
Sbjct: 75458990 gagcaggt 75458997
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 890 cagggaggaatgatcaactggaatcgtcttttccctcctttacgacagcgacggaacgtc 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75606259 cagggaggaatgatcaactggaatcgtcttttccctcctttacgacagcgacggaacgtc 75606318
Query: 950 aactatcaggatggtcggcggtctgaaccacaagcgtcccctcctctagaggtttcagag 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75606319 aactatcaggatggtcggcggtctgaaccacaagcgtcccctcctctagaggtttcagag 75606378
Query: 1010 gagcaggt 1017
||||||||
Sbjct: 75606379 gagcaggt 75606386
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 475 cctggcacctgtatttgctctgtttgtaccattttactgctccatcccgagagtccaagt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75498981 cctggcacctgtatttgctctgtttgtaccattttactgctccatcccgagagtccaagt 75498922
Query: 535 ggcgcatatcctgggcccgctgtccatcacaaacaagacactgatttatatactgggact 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75498921 ggcgcatatcctgggcccgctgtccatcacaaacaagacactgatttatatactgggact 75498862
Query: 595 acag 598
||||
Sbjct: 75498861 acag 75498858
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 475 cctggcacctgtatttgctctgtttgtaccattttactgctccatcccgagagtccaagt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75551408 cctggcacctgtatttgctctgtttgtaccattttactgctccatcccgagagtccaagt 75551467
Query: 535 ggcgcatatcctgggcccgctgtccatcacaaacaagacactgatttatatactgggact 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75551468 ggcgcatatcctgggcccgctgtccatcacaaacaagacactgatttatatactgggact 75551527
Query: 595 acag 598
||||
Sbjct: 75551528 acag 75551531
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 243 agatttggagattgatatgtggaagaataatttgcctcgatttgaaagatactttctgca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75413956 agatttggagattgatatgtggaagaataatttgcctcgatttgaaagatactttctgca 75414015
Query: 303 gtagtctgcttatttataattttaggatatttgaaagaagatatggaagcaggaaatttg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75414016 gtagtctgcttatttataattttaggatatttgaaagaagatatggaagcaggaaatttg 75414075
Query: 363 ca 364
||
Sbjct: 75414076 ca 75414077
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 2 gtgcgcctgcgcggtcgccgggctccctccgcctccgcttcccctccccctgtcccccgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75379558 gtgcgcctgcgcggtcgccgggctccctccgcctccgcttcccctccccctgtcccccgc 75379617
Query: 62 gggggctctgggtccggcgggaccatgttcaccagcaccggctccagtgggctct 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75379618 gggggctctgggtccggcgggaccatgttcaccagcaccggctccagtgggctct 75379672
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 365 tcctttttgctgggctcctgggttctgtcagccgtgggtgacttcattctcgtggaagct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75415131 tcctttttgctgggctcctgggttctgtcagccgtgggtgacttcattctcgtggaagct 75415190
Query: 425 gtgcagtattcctttggtatcactgcagccagaaatttgccttctggatt 474
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75415191 gtgcagtattcctttggtatcactgcagccagaaatttgccttctggatt 75415240
Score = 103 bits (52), Expect = 3e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 597 agcttttcacctctggttcctacatctggattgtagccataagtggacttgt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75555695 agcttttcacctctggttcctacatctggattgtagccataagtggacttgt 75555746
>Sscrofa_Chr03
|| Length = 144787322
Score = 270 bits (136), Expect = 2e-69
Identities = 163/172 (94%)
Strand = Plus / Plus
Query: 475 cctggcacctgtatttgctctgtttgtaccattttactgctccatcccgagagtccaagt 534
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45188146 cctggcacctgtggttgctctgtttgtaccattttactgctccatcccgagagtccaagt 45188205
Query: 535 ggcgcatatcctgggcccgctgtccatcacaaacaagacactgatttatatactgggact 594
||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 45188206 ggcacatatcctgggcctgctgtccatgacaaacaagacactgatttatatacggggaca 45188265
Query: 595 acagcttttcacctctggttcctacatctggattgtagccataagtggactt 646
||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 45188266 acagcttctcacctctggttcctacatctggattgtagccgtaagtggactt 45188317
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,946,288
Number of extensions: 313
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 12
Length of query: 1519
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1498
Effective length of database: 2,808,413,156
Effective search space: 4207002907688
Effective search space used: 4207002907688
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)