Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013577
(1208 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854842.1| PREDICTED: similar to Lactosylceramide alpha-2,... 474 e-162
Alignment gi|XP_848941.1| PREDICTED: similar to ST3 beta-galactoside alph... 116 2e-26
Alignment gi|XP_857482.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 110 1e-24
Alignment gi|XP_848351.1| PREDICTED: similar to alpha2,3-sialyltransferas... 92 1e-18
Alignment gi|XP_546834.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 78 1e-14
Alignment gi|XP_853375.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 57 5e-12
Alignment gi|XP_539171.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 67 3e-11
Alignment gi|XP_855629.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 67 3e-11
Alignment gi|XP_542976.2| PREDICTED: similar to ST3 beta-galactoside alph... 62 1e-09
Alignment gi|XP_538436.2| PREDICTED: similar to beta-galactoside alpha-2,... 61 2e-09
>ref|XP_854842.1| PREDICTED: similar to Lactosylceramide alpha-2,3-sialyltransferase
(CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase)
(Ganglioside GM3 synthase) (ST3Gal V) (Sialyltransferase
9) [Canis familiaris].
Length = 390
Score = 474 bits (1219), Expect(2) = e-162
Identities = 232/275 (84%), Positives = 242/275 (88%)
Frame = +1
Query: 205 MPSESNCVKLRSDRARPSLPWYPRAQSKMRRPSXXXXXXXXXXXXVFGVWILYILKLNYT 384
MPSE N VKLRSDR+RPSL WY RAQ+KMRRP+ VFGVWILYILKLNYT
Sbjct: 1 MPSEYNYVKLRSDRSRPSLQWYTRAQNKMRRPNLLLKDILKCTLLVFGVWILYILKLNYT 60
Query: 385 TEECDMKKMHYVDPDRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKA 564
TEECDMKKMHYVDPDR+KRAQKYAQQVLQKECRP FAK+SMAQLF RYSTDLPPFV +
Sbjct: 61 TEECDMKKMHYVDPDRVKRAQKYAQQVLQKECRPKFAKKSMAQLFEHRYSTDLPPFVKET 120
Query: 565 PLGSKAESKYDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLE 744
P ++AE KYDPPFGFRKFSS+VQ LLE+LPEHD PEHL AKSCRRCVVIGSGGILHGL
Sbjct: 121 PKMNEAEYKYDPPFGFRKFSSEVQTLLEILPEHDMPEHLRAKSCRRCVVIGSGGILHGLA 180
Query: 745 LGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKS 924
LG ALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKS
Sbjct: 181 LGQALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKS 240
Query: 925 VDFNWLQAMVKNETLPFWVRLFFWKAVAEKIHYSP 1029
VDFNWLQAMVKNETLPFWVRLFFWK VAEKI P
Sbjct: 241 VDFNWLQAMVKNETLPFWVRLFFWKQVAEKIPLQP 275
Score = 116 bits (291), Expect(2) = e-162
Identities = 55/66 (83%), Positives = 59/66 (89%)
Frame = +3
Query: 1011 KNPLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEIS 1190
K PLQPKHFRILNPV +ETAFDILQYS+PQSRFWGR NVP +GVIAVVLATHLCDE+S
Sbjct: 270 KIPLQPKHFRILNPVIIKETAFDILQYSEPQSRFWGRDKNVPTIGVIAVVLATHLCDEVS 329
Query: 1191 LPGFGY 1208
L GFGY
Sbjct: 330 LAGFGY 335
>ref|XP_848941.1| PREDICTED: similar to ST3 beta-galactoside
alpha-2,3-sialyltransferase 4 isoform 1 [Canis
familiaris].
Length = 251
Score = 116 bits (290), Expect(2) = 2e-26
Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 2/179 (1%)
Frame = +1
Query: 469 QKECRPHFAKRSMAQLFGPRYSTDLPPFVT-KAPLGSKAESKYDPPFGFRKFSSKVQALL 645
++ C A+R ++LFG YS D P F+ K K S Y+ P+G K S + +
Sbjct: 39 KEPCFQGEAERKASKLFG-NYSRDQPIFLQMKDYFWVKTPSAYELPYG-TKGSEDLLLRV 96
Query: 646 ELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVG 825
+ + PE + + CRRCVV+G+G L LG A+N++DVVIRLN+APV GY VG
Sbjct: 97 LAITSYSIPESIQSLKCRRCVVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVG 156
Query: 826 NKTTIRMTYPEGAPLS-DLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWK 999
+KTT+R+ YPE A + +E + L V V FK++DF+W++ ++ ++ VR FWK
Sbjct: 157 SKTTMRLFYPESAHFNPKVENNPDTLLVLVAFKAMDFHWIETILSDKKR---VRKGFWK 212
Score = 22.3 bits (46), Expect(2) = 2e-26
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 1020 LQPKHFRILNPVYYQETAFDILQYSKPQSR 1109
+ P+ RILNP + + A +L Q R
Sbjct: 220 VNPRQVRILNPFFMEIAADKLLNLPMKQPR 249
>ref|XP_857482.1| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha
2,3-sialyltransferase IV) (Alpha 2,3-ST) (Gal-NAc6S)
(STZ) (SIAT4-C) (ST3Gal III) (SAT-3) (ST-4)... isoform 2
[Canis familiaris].
Length = 209
Score = 110 bits (274), Expect(2) = 1e-24
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Frame = +1
Query: 529 YSTDLPPFVT-KAPLGSKAESKYDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRC 705
YS D P F+ K K S Y+ P+G K S + + + + PE + + CRRC
Sbjct: 16 YSRDQPIFLQMKDYFWVKTPSAYELPYG-TKGSEDLLLRVLAITSYSIPESIQSLKCRRC 74
Query: 706 VVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLS-DLE 882
VV+G+G L LG A+N++DVVIRLN+APV GY VG+KTT+R+ YPE A + +E
Sbjct: 75 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE 134
Query: 883 YYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWK 999
+ L V V FK++DF+W++ ++ ++ VR FWK
Sbjct: 135 NNPDTLLVLVAFKAMDFHWIETILSDKKR---VRKGFWK 170
Score = 22.3 bits (46), Expect(2) = 1e-24
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 1020 LQPKHFRILNPVYYQETAFDILQYSKPQSR 1109
+ P+ RILNP + + A +L Q R
Sbjct: 178 VNPRQVRILNPFFMEIAADKLLNLPMKQPR 207
>ref|XP_848351.1| PREDICTED: similar to alpha2,3-sialyltransferase VI isoform 3 [Canis
familiaris].
Length = 331
Score = 91.7 bits (226), Expect = 1e-18
Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 4/223 (1%)
Frame = +1
Query: 409 MHYVDPDRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAE- 585
+++V P +KR K +P AK + A L R+ PF+ A A
Sbjct: 28 IYWVPPVEMKRRNKI---------QPCLAKPAFASLL--RFH-QFHPFLCAADFKKIASL 75
Query: 586 ---SKYDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPA 756
K+D P+G R + + L L D + C++CVV+G+GG+L LG
Sbjct: 76 YGSDKFDLPYGIRTSAEYFRLALSKLQSCDLFDEFDNVPCKKCVVVGNGGVLKNKTLGEK 135
Query: 757 LNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFN 936
++ +DV+IR+N+ PV G+ E VG +TT R+ YPE N + FK +D
Sbjct: 136 IDSYDVIIRMNNGPVLGHEEEVGRRTTFRLFYPESVFSDPNHNDPNTTAILTAFKPLDLK 195
Query: 937 WLQAMVKNETLPFWVRLFFWKAVAEKIHYSPNTSGF*IQFIIK 1065
WL ++ + FWK A + Y P FII+
Sbjct: 196 WLWEVLTGGKIN---TNGFWKKPALNLIYKPYQIRILDPFIIR 235
>ref|XP_546834.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalA.2) (SIAT4-B) (ST3Gal II)... [Canis familiaris].
Length = 350
Score = 78.2 bits (191), Expect = 1e-14
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 20/227 (8%)
Frame = +1
Query: 355 ILYILKLNYTTEECDMKKMHYVDPD------RIKRAQKYAQ-QVLQKE--------CRPH 489
+++I+ L +T M + Y+D R+K YA Q L KE CR
Sbjct: 16 LVFIMSLLFTYSHHSMATLPYLDSGALGGTHRVKLVPGYAGLQRLSKEGLTGKSCACRRC 75
Query: 490 FAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESK-----YDPPFGFRKFSSKVQALLELL 654
+ F +++++ P T+ + + + P F + ++ L +++
Sbjct: 76 MGDTGASDWFDSHFNSNISPVWTRENMDLPPDVQRWWMMLQPQFKSHNTNEVLEKLFQIV 135
Query: 655 PEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKT 834
P + CRRC V+G+ G L G GP ++ + ++R+N AP G+ + VG++T
Sbjct: 136 PGENPYRFRDPHQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDVGSRT 195
Query: 835 TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPF 975
T YPE A +N FV V FK++D W+ + + + F
Sbjct: 196 THHFMYPESAK----NLPANVSFVLVPFKALDLLWIASALSTGQIRF 238
>ref|XP_853375.1| PREDICTED: similar to CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase (N-acetyllactosaminide
alpha-2,3-sialyltransferase) (Gal beta-1,3(4) GlcNAc
alpha-2,3 sialyltransferase) (ST3N) (ST3GalIII)
(Sialyltransferase 6) [Canis familiaris].
Length = 162
Score = 57.4 bits (137), Expect(2) = 5e-12
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 50 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 107
Query: 1197 GFGY 1208
GFGY
Sbjct: 108 GFGY 111
Score = 32.3 bits (72), Expect(2) = 5e-12
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 880 EYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWKAVAEKIHYSP 1029
+Y + LFV FK DF WL+ +V E + FWK+VA ++ P
Sbjct: 6 QYERDSLFVLAGFKWQDFKWLKYIVYKERVS--ASDGFWKSVATRVPKEP 53
>ref|XP_539171.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 342
Score = 67.4 bits (163), Expect = 3e-11
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 7/188 (3%)
Frame = +1
Query: 427 DRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPF 606
+ K+ KY + C ++ ++ F R++ + P +T A E Y
Sbjct: 48 ENFKKFMKYTHRPCT--CARCIGQQRVSAWFDERFNRSMQPLLT-AQNALLEEDTYSWWL 104
Query: 607 GFRK------FSSKVQALLELLPEHDFPE-HLTAKSCRRCVVIGSGGILHGLELGPALNQ 765
++ + ++ L +++P + P + CRRC V+G+ G L GP ++
Sbjct: 105 RLQREKQPNNLNDTIRELFQVVPGNVDPLLEKRSVGCRRCAVVGNSGNLRESWYGPQIDS 164
Query: 766 FDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQ 945
D V+R+N AP G+ VG+KTT + YPE S E N V V FK+ D W+
Sbjct: 165 HDFVLRMNKAPTAGFEMDVGSKTTHHLVYPE----SFRELAENVSMVLVPFKTTDLEWVV 220
Query: 946 AMVKNETL 969
+ T+
Sbjct: 221 SATTTGTI 228
>ref|XP_855629.1| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 227
Score = 67.4 bits (163), Expect = 3e-11
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 7/188 (3%)
Frame = +1
Query: 427 DRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPF 606
+ K+ KY + C ++ ++ F R++ + P +T A E Y
Sbjct: 45 ENFKKFMKYTHRPCT--CARCIGQQRVSAWFDERFNRSMQPLLT-AQNALLEEDTYSWWL 101
Query: 607 GFRK------FSSKVQALLELLPEHDFPE-HLTAKSCRRCVVIGSGGILHGLELGPALNQ 765
++ + ++ L +++P + P + CRRC V+G+ G L GP ++
Sbjct: 102 RLQREKQPNNLNDTIRELFQVVPGNVDPLLEKRSVGCRRCAVVGNSGNLRESWYGPQIDS 161
Query: 766 FDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQ 945
D V+R+N AP G+ VG+KTT + YPE S E N V V FK+ D W+
Sbjct: 162 HDFVLRMNKAPTAGFEMDVGSKTTHHLVYPE----SFRELAENVSMVLVPFKTTDLEWVV 217
Query: 946 AMVKNETL 969
+ T+
Sbjct: 218 SATTTGTI 225
>ref|XP_542976.2| PREDICTED: similar to ST3 beta-galactoside
alpha-2,3-sialyltransferase 2 isoform 2 [Canis
familiaris].
Length = 236
Score = 61.6 bits (148), Expect = 1e-09
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +1
Query: 691 SCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGA 864
SCR C V+G+ L G G +NQ D+V+R+N APV+G+ VGN TT+R+ YP+ A
Sbjct: 34 SCRTCAVVGNSRCLRGSGHGFRINQNDMVLRMNQAPVQGFEMDVGNTTTMRIMYPDMA 91
>ref|XP_538436.2| PREDICTED: similar to beta-galactoside alpha-2,6-sialyltransferase II
[Canis familiaris].
Length = 553
Score = 61.2 bits (147), Expect = 2e-09
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 33/212 (15%)
Frame = +1
Query: 508 AQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPF---GFRKFSSKVQALLELLPEHDFPEH 678
+++ PR + +++ G + + PF G+RK V
Sbjct: 16 SKMLAPRLQKAMQDYLSANKHGVRFRGRRAAPFAALGWRKLVPAVPL-----------SR 64
Query: 679 LTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIR----- 843
L + R C V+ S G + LG ++ D V+R NSAP GY + VGNKTT+R
Sbjct: 65 LHPRGLRSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTVRIINSQ 124
Query: 844 -MTYPEGAPLSDLEYYSNDLFVA-----------VLFKSVDFN----WLQAMVKNETLPF 975
+T P D Y + + VA + +K D+N ++Q +N PF
Sbjct: 125 ILTNP-SHHFIDSSLYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYVQHRQRNPNQPF 183
Query: 976 WV--RLFFWKA-------VAEKIHYSPNTSGF 1044
++ F W+ EKI +P +SGF
Sbjct: 184 YILHPKFIWQLWDIIQENTKEKIQPNPPSSGF 215
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,864,858
Number of extensions: 1334209
Number of successful extensions: 4421
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4409
Number of HSP's successfully gapped: 24
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013577
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013577
(1208 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991376.2| lactosylceramide alpha-2,3-sialyltransferase [B... 472 e-159
Alignment gi|NP_001002882.1| CMP-N-acetylneuraminate-beta-1,4-galactoside... 134 2e-42
Alignment gi|NP_991375.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 116 4e-33
Alignment gi|NP_001002883.1| type 2 lactosamine alpha-2,3-sialyltransfera... 92 7e-25
Alignment gi|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 77 2e-14
Alignment gi|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 72 1e-12
Alignment gi|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase... 60 3e-09
Alignment gi|XP_002696249.1| PREDICTED: ST6 (alpha-N-acetyl-neuraminyl-2,... 60 4e-09
Alignment gi|XP_876077.3| PREDICTED: sialyltransferase 7A [Bos taurus]. 60 5e-09
Alignment gi|NP_001001151.2| alpha-N-acetylgalactosaminide alpha-2,6-sial... 55 2e-07
>ref|NP_991376.2| lactosylceramide alpha-2,3-sialyltransferase [Bos taurus].
Length = 420
Score = 472 bits (1214), Expect(2) = e-159
Identities = 236/306 (77%), Positives = 255/306 (83%), Gaps = 1/306 (0%)
Frame = +1
Query: 115 MRTKASGCTERRPLQPQTEXXXXXXXXXXXMPSESNCVKLRSDRARPSLPWYPRAQSKMR 294
MR KA+G ERRPL+P+TE MPS+ + +KLR D +RPSL WY RAQ+KMR
Sbjct: 1 MRKKAAGGAERRPLKPRTEAAAAAPAGRA-MPSDHSRMKLRRDCSRPSLQWYTRAQNKMR 59
Query: 295 RPSXXXXXXXXXXXXVFGVWIL-YILKLNYTTEECDMKKMHYVDPDRIKRAQKYAQQVLQ 471
RP+ +FGVWIL YILKLN+TTEECDMK+M Y+DPDRIKRAQ+YAQQVLQ
Sbjct: 60 RPNLLLKDILKCTLLLFGVWILFYILKLNHTTEECDMKRMPYMDPDRIKRAQQYAQQVLQ 119
Query: 472 KECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKFSSKVQALLEL 651
KECRP FAKRSMAQLFG RYS DLPPFVTK P S+AE KYDPPFGFRKFS KVQ LLEL
Sbjct: 120 KECRPQFAKRSMAQLFGSRYSLDLPPFVTKVPAESEAEYKYDPPFGFRKFSGKVQTLLEL 179
Query: 652 LPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNK 831
LPEHDFPEHL AKSC+ CVVIGSGGILHGLE+G ALNQFDVVIRLN+APVEGYSEHVGNK
Sbjct: 180 LPEHDFPEHLRAKSCKHCVVIGSGGILHGLEMGHALNQFDVVIRLNNAPVEGYSEHVGNK 239
Query: 832 TTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWKAVAE 1011
TTIRMTYPEGAPLSDLEYYS+DLFV VLFKSVDFNWLQAMVKNETLPFWVRLFFWK VAE
Sbjct: 240 TTIRMTYPEGAPLSDLEYYSSDLFVTVLFKSVDFNWLQAMVKNETLPFWVRLFFWKQVAE 299
Query: 1012 KIHYSP 1029
KI P
Sbjct: 300 KIPLQP 305
Score = 111 bits (277), Expect(2) = e-159
Identities = 53/66 (80%), Positives = 57/66 (86%)
Frame = +3
Query: 1011 KNPLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEIS 1190
K PLQPK FRILNPV +ETAFDILQYS+PQSRFWGR NVP +GVIAVVLATHLCDE+S
Sbjct: 300 KIPLQPKQFRILNPVIIKETAFDILQYSEPQSRFWGRDKNVPTIGVIAVVLATHLCDEVS 359
Query: 1191 LPGFGY 1208
L GF Y
Sbjct: 360 LAGFSY 365
>ref|NP_001002882.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Bos taurus].
Length = 374
Score = 134 bits (338), Expect(2) = 2e-42
Identities = 72/196 (36%), Positives = 114/196 (58%)
Frame = +1
Query: 442 AQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKF 621
A KY + + C+P +A M +F PR+S P F+ + ++ PPFG +
Sbjct: 74 ATKY-ENFSEGTCKPGYASALMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 131
Query: 622 SSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPV 801
+ ++A+L + E+ L + SCRRC+++G+GG+L LG ++ +D+V+RLNSAPV
Sbjct: 132 DNLIKAILSVTKEYRLTPALDSLSCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPV 191
Query: 802 EGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWV 981
+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E +
Sbjct: 192 KGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVS--A 249
Query: 982 RLFFWKAVAEKIHYSP 1029
FWK+VA ++ P
Sbjct: 250 SDGFWKSVATRVPKEP 265
Score = 57.4 bits (137), Expect(2) = 2e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 262 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 319
Query: 1197 GFGY 1208
GFGY
Sbjct: 320 GFGY 323
>ref|NP_991375.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 4 [Bos taurus].
Length = 333
Score = 116 bits (290), Expect(2) = 4e-33
Identities = 69/179 (38%), Positives = 108/179 (60%), Gaps = 2/179 (1%)
Frame = +1
Query: 469 QKECRPHFAKRSMAQLFGPRYSTDLPPFVT-KAPLGSKAESKYDPPFGFRKFSSKVQALL 645
++ C A++ +++LFG YS + P F+ K K S Y+ P+G K S + +
Sbjct: 43 KEPCLQGEAEKMVSKLFG-NYSREQPFFLQLKDYFWVKTPSLYELPYG-TKGSEDLLLRV 100
Query: 646 ELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVG 825
+ + PE + + CRRCVV+G+G L LG A+N++DVVIRLNSAPV GY + VG
Sbjct: 101 LAITSYSIPESIQSLKCRRCVVVGNGHRLRNSSLGEAINKYDVVIRLNSAPVAGYEQDVG 160
Query: 826 NKTTIRMTYPEGAPLS-DLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWK 999
+KTT+R+ YPE A + +E + L V V FK++DF+W+++++ ++ VR FWK
Sbjct: 161 SKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKR---VRKGFWK 216
Score = 44.7 bits (104), Expect(2) = 4e-33
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +3
Query: 1020 LQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLPG 1199
+ PK RILNP Y + A +L Q + P G++A+ LA HLCD + + G
Sbjct: 224 VNPKQIRILNPFYMEIAADKLLSLPIHQPH---KIKQKPTTGLLAITLALHLCDLVHIAG 280
Query: 1200 FGY 1208
FGY
Sbjct: 281 FGY 283
>ref|NP_001002883.1| type 2 lactosamine alpha-2,3-sialyltransferase [Bos taurus].
Length = 331
Score = 92.0 bits (227), Expect(2) = 7e-25
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Frame = +1
Query: 547 PFVTKAPLGSKAE----SKYDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVI 714
PF+ A + A K+D P+G + ++ + L LP D + C++CVV+
Sbjct: 62 PFLCAANFKNTASFYGSDKFDLPYGMKASATHFRLALWKLPNCDIFDEFDNVPCKKCVVV 121
Query: 715 GSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSN 894
G+GGIL LG ++ +DV+IR+N+ PV G+ E VG +TT R+ YPE N
Sbjct: 122 GNGGILKNKTLGEKIDSYDVIIRMNNGPVLGHEEEVGRRTTFRLFYPESVFSDPNHNDPN 181
Query: 895 DLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWKAVAEKIHYSP 1029
+ FK +D WL ++ + FWK A + Y P
Sbjct: 182 TTVILTAFKPLDLKWLWELLTGGKIS---PNGFWKEPALNLIYKP 223
Score = 41.2 bits (95), Expect(2) = 7e-25
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +3
Query: 1023 QPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLPGF 1202
+P RIL+P + A+++L + K + + P G+IA+ LA H+C E+ L GF
Sbjct: 222 KPYQIRILDPYITRMAAYELLHFPKVFPK--NQKPKHPTTGIIAITLAFHICHEVHLAGF 279
Query: 1203 GY 1208
Y
Sbjct: 280 KY 281
>ref|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Bos taurus].
Length = 350
Score = 77.4 bits (189), Expect = 2e-14
Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 20/227 (8%)
Frame = +1
Query: 355 ILYILKLNYTTEECDMKKMHYVDPD------RIKRAQKYAQ-QVLQKE--------CRPH 489
+++++ L +T + Y+D R+K YA Q L KE CR
Sbjct: 16 LVFVMSLLFTYSHHSTATLPYLDSGALDGAPRVKLVPGYAGLQRLSKEGLAGKSCACRRC 75
Query: 490 FAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESK-----YDPPFGFRKFSSKVQALLELL 654
++ F +++++ P T+ + + + P F + ++ L +++
Sbjct: 76 MGDTGASEWFDSHFNSNISPVWTRENMDLPPDVQRWWMMLQPQFKSHNTNEVLEKLFQIV 135
Query: 655 PEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKT 834
P + + CRRC V+G+ G L G GP ++ + ++R+N AP G+ + VG++T
Sbjct: 136 PGENPYRFRDPRQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDVGSRT 195
Query: 835 TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPF 975
T YPE A +N FV V FK++D W+ + + + F
Sbjct: 196 THHFMYPESAK----NLPANVSFVLVPFKALDLLWIASALSTGQIRF 238
>ref|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Bos taurus].
Length = 339
Score = 71.6 bits (174), Expect = 1e-12
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 7/196 (3%)
Frame = +1
Query: 403 KKMHYVDPDRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKA 582
K+M + + K+ KY+ + C +R ++ F R++ + P +T A
Sbjct: 37 KQMVHELSENFKKLMKYSNRPCT--CTRCIGQRRVSSWFDERFNRSMQPLLT-AKNALLE 93
Query: 583 ESKYDPPFGFRK------FSSKVQALLELLPEHDFPE-HLTAKSCRRCVVIGSGGILHGL 741
E Y+ ++ + ++ L +++P P + CRRC V+G+ G L
Sbjct: 94 EDTYNWWLRLQREKQPNNLNDTIKELFQVVPGDVDPLLEKGSVGCRRCAVVGNSGNLRES 153
Query: 742 ELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFK 921
GP ++ D V+R+N AP G+ VG KTT + YPE S E N V V FK
Sbjct: 154 WYGPQIDSHDFVLRMNKAPTAGFEADVGRKTTHHLVYPE----SFRELAENVSMVLVPFK 209
Query: 922 SVDFNWLQAMVKNETL 969
+VD W+ + T+
Sbjct: 210 TVDLEWVISATTKGTI 225
>ref|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase 2 [Bos taurus].
Length = 495
Score = 60.5 bits (145), Expect = 3e-09
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 30/152 (19%)
Frame = +1
Query: 679 LTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIR----- 843
L + R C V+ S G + LG ++ D V+R NSAP GY + VGNKTT+R
Sbjct: 260 LLPRRLRTCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTVRIINSQ 319
Query: 844 -MTYPEGAPLSDLEYYSNDLFVA-----------VLFKSVDFN----WLQAMVKNETLPF 975
+T P D Y + + VA + +K D+N ++Q +N PF
Sbjct: 320 ILTNP-SYHFMDSALYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYVQHRQRNPNQPF 378
Query: 976 WV--RLFFWKA-------VAEKIHYSPNTSGF 1044
++ F W+ EKI +P +SGF
Sbjct: 379 YILHPKFIWQLWDIIQENTKEKIQPNPPSSGF 410
>ref|XP_002696249.1| PREDICTED: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
[Bos taurus].
Length = 633
Score = 60.1 bits (144), Expect = 4e-09
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Frame = +1
Query: 592 YDPPFGFRKFS-SKVQALLELLPEHDFPEHLTAK------SCRRCVVIGSGGILHGLELG 750
+ PPFGF + + S VQ ++ P + L A C C V+G+GGIL+ +G
Sbjct: 356 FAPPFGFMELNFSLVQKVVARFPPVPQQQLLLASLPAGSSQCISCAVVGNGGILNNSHVG 415
Query: 751 PALNQFDVVIRLNSAPVEGYSEHVGNKT------------TIRMTYPEGAPLSDLEYYSN 894
P ++ D V RL+ A ++GY VG +T ++ + G P + L +
Sbjct: 416 PEIDSHDYVFRLSGAIIKGYEHDVGTRTSFYGFTAFSLTQSLLILGSRGFPHAPLG--QD 473
Query: 895 DLFVAVLFKSVDFNWLQAMVKNETL 969
++ L + D+ WL+A++ N TL
Sbjct: 474 VRYLHFLEGTRDYEWLEALLLNRTL 498
>ref|XP_876077.3| PREDICTED: sialyltransferase 7A [Bos taurus].
Length = 640
Score = 59.7 bits (143), Expect = 5e-09
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Frame = +1
Query: 592 YDPPFGFRKFS-SKVQALLELLPEHDFPEHLTAK------SCRRCVVIGSGGILHGLELG 750
+ PPFGF + + S VQ ++ P + L A C C V+G+GGIL+ +G
Sbjct: 363 FAPPFGFMELNFSLVQKVVARFPPVPQQQLLLASLPAGSSRCISCAVVGNGGILNNSHVG 422
Query: 751 PALNQFDVVIRLNSAPVEGYSEHVGNKT------------TIRMTYPEGAPLSDLEYYSN 894
P ++ D V RL+ A ++GY VG +T ++ + G P + L +
Sbjct: 423 PEIDSHDYVFRLSGAIIKGYEHDVGTRTSFYGFTAFSLTQSLLILGSRGFPHAPLG--QD 480
Query: 895 DLFVAVLFKSVDFNWLQAMVKNETL 969
++ L + D+ WL+A++ N TL
Sbjct: 481 VRYLHFLEGTRDYEWLEALLLNRTL 505
>ref|NP_001001151.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Bos
taurus].
Length = 332
Score = 54.7 bits (130), Expect = 2e-07
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1
Query: 694 CRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRM 846
C +CV++ S L G +LGP + + + IR+N AP GYS VGNKTT R+
Sbjct: 104 CGQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGNKTTFRV 154
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,036,890
Number of extensions: 1325314
Number of successful extensions: 4294
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4283
Number of HSP's successfully gapped: 17
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013577
(1208 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354781.1| PREDICTED: hypothetical protein LOC100625751... 365 e-101
Alignment gi|NP_998924.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 135 7e-43
Alignment gi|NP_998922.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 115 5e-33
Alignment gi|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-gala... 79 7e-15
Alignment gi|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 67 2e-11
Alignment gi|XP_003358003.1| PREDICTED: alpha-N-acetylgalactosaminide alp... 64 2e-10
Alignment gi|XP_003358002.1| PREDICTED: alpha-N-acetylgalactosaminide alp... 64 2e-10
Alignment gi|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyl... 62 5e-10
Alignment gi|XP_003122237.2| PREDICTED: alpha-N-acetylgalactosaminide alp... 55 6e-08
Alignment gi|NP_999601.1| beta-galactosamide alpha-2,6-sialyltransferase ... 49 4e-06
>ref|XP_003354781.1| PREDICTED: hypothetical protein LOC100625751, partial [Sus scrofa].
Length = 498
Score = 365 bits (936), Expect = e-101
Identities = 178/181 (98%), Positives = 179/181 (98%)
Frame = +1
Query: 427 DRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPF 606
D +RAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPF
Sbjct: 215 DSFQRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPF 274
Query: 607 GFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRL 786
GFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRL
Sbjct: 275 GFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRL 334
Query: 787 NSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNET 966
NSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNET
Sbjct: 335 NSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNET 394
Query: 967 L 969
L
Sbjct: 395 L 395
>ref|NP_998924.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Sus scrofa].
Length = 374
Score = 135 bits (340), Expect(2) = 7e-43
Identities = 73/196 (37%), Positives = 114/196 (58%)
Frame = +1
Query: 442 AQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKF 621
A KYA + C+P +A M +F PR+S P F+ + ++ PPFG +
Sbjct: 74 ATKYAN-FSEGACKPGYASAVMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 131
Query: 622 SSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPV 801
+ ++A+L + E+ L + SCRRC+++G+GG+L LG ++ +D+V+RLNSAPV
Sbjct: 132 DNLIKAILSVTKEYRLTPALDSLSCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPV 191
Query: 802 EGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWV 981
+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E +
Sbjct: 192 KGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVS--A 249
Query: 982 RLFFWKAVAEKIHYSP 1029
FWK+VA ++ P
Sbjct: 250 SDGFWKSVATRVPKEP 265
Score = 57.4 bits (137), Expect(2) = 7e-43
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 262 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 319
Query: 1197 GFGY 1208
GFGY
Sbjct: 320 GFGY 323
>ref|NP_998922.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 4 [Sus scrofa].
Length = 333
Score = 115 bits (287), Expect(2) = 5e-33
Identities = 74/197 (37%), Positives = 114/197 (57%), Gaps = 8/197 (4%)
Frame = +1
Query: 433 IKRAQKYAQ----QVLQKE--CRPHFAKRSMAQLFGPRYSTDLPPFVT-KAPLGSKAESK 591
I R +Y + +L+K+ C A+R +++LFG YS + P F+ K K S
Sbjct: 25 ISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG-NYSQEQPIFLQLKDYFWVKTPSA 83
Query: 592 YDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFD 771
Y+ P+G K S + + + + PE + CRRCVV+G+G L LG A+N++D
Sbjct: 84 YELPYG-TKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYD 142
Query: 772 VVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLS-DLEYYSNDLFVAVLFKSVDFNWLQA 948
VVIRLN+APV GY VG+KTT+R+ YPE A + +E + L V V FK++DF+W+++
Sbjct: 143 VVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIES 202
Query: 949 MVKNETLPFWVRLFFWK 999
++ ++ VR FWK
Sbjct: 203 ILSDKKR---VRKGFWK 216
Score = 44.7 bits (104), Expect(2) = 5e-33
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +3
Query: 1020 LQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLPG 1199
+ PK RILNP Y + A +L Q + P G++A+ LA HLCD + + G
Sbjct: 224 VNPKQIRILNPFYMEIAADKLLSLPIHQPH---KIKQKPTTGLLAITLALHLCDLVHIAG 280
Query: 1200 FGY 1208
FGY
Sbjct: 281 FGY 283
>ref|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Sus scrofa].
Length = 335
Score = 78.6 bits (192), Expect = 7e-15
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 20/227 (8%)
Frame = +1
Query: 355 ILYILKLNYTTEECDMKKMHYVDPD------RIKRAQKYAQ-QVLQKE--------CRPH 489
+++I+ L +T M + Y+D R+K YA Q L KE CR
Sbjct: 16 LVFIMSLLFTYSHHSMATVPYLDSGALGGTHRVKLVPGYAGLQRLSKEGLAGKSCACRRC 75
Query: 490 FAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESK-----YDPPFGFRKFSSKVQALLELL 654
++ F +++++ P T+ + + + P F + ++ L +++
Sbjct: 76 MGDAGASEWFDSHFNSNISPVWTRENMDLPPDVQRWWMMLQPQFKSHNTNEVLEKLFQIV 135
Query: 655 PEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKT 834
P + CRRC V+G+ G L G GP ++ + ++R+N AP G+ + VG++T
Sbjct: 136 PGENPYRFRDPHQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDVGSRT 195
Query: 835 TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPF 975
T YPE A +N FV V FK++D W+ + + + F
Sbjct: 196 THHFMYPESAK----NLPANVSFVLVPFKALDLLWIASALSTGQIRF 238
>ref|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Sus scrofa].
Length = 343
Score = 67.0 bits (162), Expect = 2e-11
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = +1
Query: 691 SCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPL 870
SCRRC V+G+ G L GP ++ D V+R+N AP EG+ VG+KTT YPE
Sbjct: 141 SCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTHHFVYPE---- 196
Query: 871 SDLEYYSNDLFVAVLFKSVDFNWL 942
S E + V FK+ D W+
Sbjct: 197 SFRELAQEVSMILVPFKTTDLEWV 220
>ref|XP_003358003.1| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 1-like [Sus scrofa].
Length = 567
Score = 63.5 bits (153), Expect = 2e-10
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Frame = +1
Query: 592 YDPPFGFRKFS-SKVQALLELLPEHDFPEHLTA------KSCRRCVVIGSGGILHGLELG 750
+ PPFGF + + S VQ ++ P + L A C RC V+G+GGIL+ +G
Sbjct: 290 FAPPFGFMELNFSLVQKVVTRFPPVPQQQLLLAALPSGSSQCIRCAVVGNGGILNNSHMG 349
Query: 751 PALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSV- 927
++ D V RL+ A ++GY + VG +T+ S L S A L K V
Sbjct: 350 REIDGHDYVFRLSGAVIKGYEQDVGTRTSFYGFTAFSLTQSLLILGSRGFQHAPLGKDVR 409
Query: 928 ---------DFNWLQAMVKNETLP----FWVR 984
D+ WL+A++ N+TL FW R
Sbjct: 410 YLHFLEGTRDYEWLEALLLNQTLVKKSLFWFR 441
>ref|XP_003358002.1| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 1-like [Sus scrofa].
Length = 567
Score = 63.5 bits (153), Expect = 2e-10
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Frame = +1
Query: 592 YDPPFGFRKFS-SKVQALLELLPEHDFPEHLTA------KSCRRCVVIGSGGILHGLELG 750
+ PPFGF + + S VQ ++ P + L A C RC V+G+GGIL+ +G
Sbjct: 290 FAPPFGFMELNFSLVQKVVTRFPPVPQQQLLLAALPSGSSQCIRCAVVGNGGILNNSHMG 349
Query: 751 PALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSV- 927
++ D V RL+ A ++GY + VG +T+ S L S A L K V
Sbjct: 350 REIDGHDYVFRLSGAVIKGYEQDVGTRTSFYGFTAFSLTQSLLILGSRGFQHAPLGKDVR 409
Query: 928 ---------DFNWLQAMVKNETLP----FWVR 984
D+ WL+A++ N+TL FW R
Sbjct: 410 YLHFLEGTRDYEWLEALLLNQTLVKKSLFWFR 441
>ref|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyltransferase 2-like [Sus
scrofa].
Length = 503
Score = 62.4 bits (150), Expect = 5e-10
Identities = 55/182 (30%), Positives = 80/182 (43%), Gaps = 32/182 (17%)
Frame = +1
Query: 595 DPPFGFRKFSSKVQA--LLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQF 768
+PPF + + V A L +LLP + R C V+ S G + LG ++
Sbjct: 248 EPPFSALGWRTLVPAVPLGQLLP----------RGLRSCAVVTSAGAILNSSLGEEIDSH 297
Query: 769 DVVIRLNSAPVEGYSEHVGNKTTIR------MTYPEGAPLSDLEYYSNDLFVA------- 909
D V+R NSAP GY + VGNKTTIR +T P D Y + + VA
Sbjct: 298 DAVLRFNSAPTHGYEKDVGNKTTIRIINSQILTNP-NHHFIDSSLYKDVILVAWDPAPYS 356
Query: 910 ----VLFKSVDFN----WLQAMVKNETLPFWV--RLFFWKA-------VAEKIHYSPNTS 1038
+ +K D+N ++Q +N PF++ F W+ EKI +P +S
Sbjct: 357 ANLNLWYKKPDYNLFTPYVQHRQRNPNQPFYILHPKFIWQLWDIIQENTREKIQPNPPSS 416
Query: 1039 GF 1044
GF
Sbjct: 417 GF 418
>ref|XP_003122237.2| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 6-like [Sus scrofa].
Length = 299
Score = 55.5 bits (132), Expect = 6e-08
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1
Query: 694 CRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRM 846
C +CV++ S L G +LGP + + + IR+N AP GYS VGNKTT R+
Sbjct: 71 CHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGNKTTFRV 121
>ref|NP_999601.1| beta-galactosamide alpha-2,6-sialyltransferase [Sus scrofa].
Length = 332
Score = 49.3 bits (116), Expect = 4e-06
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +1
Query: 694 CRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRM 846
CR C ++ S G L GP +++ + VIR+N AP GY VGN+T++R+
Sbjct: 89 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRV 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,619,296
Number of extensions: 897843
Number of successful extensions: 2796
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2788
Number of HSP's successfully gapped: 15
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013577
(1208 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030305.1| lactosylceramide alpha-2,3-sialyltransferase... 440 e-151
Alignment gi|NP_035505.2| lactosylceramide alpha-2,3-sialyltransferase is... 436 e-150
Alignment gi|NP_001155246.1| CMP-N-acetylneuraminate-beta-1,4-galactoside... 134 3e-42
Alignment gi|NP_033202.3| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 134 3e-42
Alignment gi|NP_033204.2| CMP-N-acetylneuraminate-beta-galactosamide-alph... 112 3e-32
Alignment gi|NP_061254.1| type 2 lactosamine alpha-2,3-sialyltransferase ... 96 9e-26
Alignment gi|NP_033205.2| CMP-N-acetylneuraminate-beta-galactosamide-alph... 74 3e-13
Alignment gi|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 67 2e-11
Alignment gi|NP_766417.1| beta-galactoside alpha-2,6-sialyltransferase 2 ... 57 2e-08
Alignment gi|NP_033206.2| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 57 4e-08
>ref|NP_001030305.1| lactosylceramide alpha-2,3-sialyltransferase isoform a [Mus
musculus].
Length = 414
Score = 440 bits (1132), Expect(2) = e-151
Identities = 217/305 (71%), Positives = 241/305 (79%)
Frame = +1
Query: 115 MRTKASGCTERRPLQPQTEXXXXXXXXXXXMPSESNCVKLRSDRARPSLPWYPRAQSKMR 294
M T+A G RRP + +++ MPSE KLRSD +R SL WY R Q KMR
Sbjct: 1 MHTEAVGGAARRPQKLRSQAAAPACRA---MPSEFTSAKLRSDCSRTSLQWYTRTQHKMR 57
Query: 295 RPSXXXXXXXXXXXXVFGVWILYILKLNYTTEECDMKKMHYVDPDRIKRAQKYAQQVLQK 474
RPS FGVW+LYIL LNYT EECDMK+MHYVDPDRIKRAQ YAQ+VLQK
Sbjct: 58 RPSLLIKDICKCTLVAFGVWLLYILILNYTAEECDMKRMHYVDPDRIKRAQSYAQEVLQK 117
Query: 475 ECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKFSSKVQALLELL 654
ECRP +AK +MA LF RYS +L PFV K P S+AE KYDPPFGFRKFSSKVQ+LL++L
Sbjct: 118 ECRPRYAKTAMALLFEDRYSINLEPFVQKVPTASEAELKYDPPFGFRKFSSKVQSLLDML 177
Query: 655 PEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKT 834
PEHDFPEHL AK+C+RCVV+G+GGILHGLELG ALNQFDVVIRLNSAPVEGYSEHVGNKT
Sbjct: 178 PEHDFPEHLRAKACKRCVVVGNGGILHGLELGHALNQFDVVIRLNSAPVEGYSEHVGNKT 237
Query: 835 TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWKAVAEK 1014
TIRMTYPEGAPLSD+EYY+NDLFV VLFKSVDF WLQAMVKNE+LPFWVRLFFWK VAEK
Sbjct: 238 TIRMTYPEGAPLSDVEYYANDLFVTVLFKSVDFKWLQAMVKNESLPFWVRLFFWKQVAEK 297
Query: 1015 IHYSP 1029
+ P
Sbjct: 298 VPLQP 302
Score = 114 bits (285), Expect(2) = e-151
Identities = 53/66 (80%), Positives = 58/66 (87%)
Frame = +3
Query: 1011 KNPLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEIS 1190
K PLQPKHFRILNPV +ETAFDILQYS+PQSRFWG N+P +GVIAVVLATHLCDE+S
Sbjct: 297 KVPLQPKHFRILNPVIIKETAFDILQYSEPQSRFWGHDKNIPTIGVIAVVLATHLCDEVS 356
Query: 1191 LPGFGY 1208
L GFGY
Sbjct: 357 LAGFGY 362
>ref|NP_035505.2| lactosylceramide alpha-2,3-sialyltransferase isoform b [Mus
musculus].
Length = 387
Score = 436 bits (1122), Expect(2) = e-150
Identities = 210/275 (76%), Positives = 229/275 (83%)
Frame = +1
Query: 205 MPSESNCVKLRSDRARPSLPWYPRAQSKMRRPSXXXXXXXXXXXXVFGVWILYILKLNYT 384
MPSE KLRSD +R SL WY R Q KMRRPS FGVW+LYIL LNYT
Sbjct: 1 MPSEFTSAKLRSDCSRTSLQWYTRTQHKMRRPSLLIKDICKCTLVAFGVWLLYILILNYT 60
Query: 385 TEECDMKKMHYVDPDRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKA 564
EECDMK+MHYVDPDRIKRAQ YAQ+VLQKECRP +AK +MA LF RYS +L PFV K
Sbjct: 61 AEECDMKRMHYVDPDRIKRAQSYAQEVLQKECRPRYAKTAMALLFEDRYSINLEPFVQKV 120
Query: 565 PLGSKAESKYDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLE 744
P S+AE KYDPPFGFRKFSSKVQ+LL++LPEHDFPEHL AK+C+RCVV+G+GGILHGLE
Sbjct: 121 PTASEAELKYDPPFGFRKFSSKVQSLLDMLPEHDFPEHLRAKACKRCVVVGNGGILHGLE 180
Query: 745 LGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKS 924
LG ALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSD+EYY+NDLFV VLFKS
Sbjct: 181 LGHALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDVEYYANDLFVTVLFKS 240
Query: 925 VDFNWLQAMVKNETLPFWVRLFFWKAVAEKIHYSP 1029
VDF WLQAMVKNE+LPFWVRLFFWK VAEK+ P
Sbjct: 241 VDFKWLQAMVKNESLPFWVRLFFWKQVAEKVPLQP 275
Score = 114 bits (285), Expect(2) = e-150
Identities = 53/66 (80%), Positives = 58/66 (87%)
Frame = +3
Query: 1011 KNPLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEIS 1190
K PLQPKHFRILNPV +ETAFDILQYS+PQSRFWG N+P +GVIAVVLATHLCDE+S
Sbjct: 270 KVPLQPKHFRILNPVIIKETAFDILQYSEPQSRFWGHDKNIPTIGVIAVVLATHLCDEVS 329
Query: 1191 LPGFGY 1208
L GFGY
Sbjct: 330 LAGFGY 335
>ref|NP_001155246.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Mus musculus].
Length = 374
Score = 134 bits (336), Expect(2) = 3e-42
Identities = 73/196 (37%), Positives = 112/196 (57%)
Frame = +1
Query: 442 AQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKF 621
A KYA + C+P +A M +F PR+S P F+ + ++ PPFG +
Sbjct: 74 ATKYAN-FSEGACKPGYASAMMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 131
Query: 622 SSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPV 801
+ ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+VIRLNSAPV
Sbjct: 132 DNLIKAILSVTKEYRLTPALDSLHCRRCIIVGNGGVLANKSLGSRIDDYDIVIRLNSAPV 191
Query: 802 EGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWV 981
+G+ VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E +
Sbjct: 192 KGFERDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVS--A 249
Query: 982 RLFFWKAVAEKIHYSP 1029
FWK+VA ++ P
Sbjct: 250 SDGFWKSVATRVPKEP 265
Score = 57.4 bits (137), Expect(2) = 3e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 262 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 319
Query: 1197 GFGY 1208
GFGY
Sbjct: 320 GFGY 323
>ref|NP_033202.3| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Mus musculus].
Length = 374
Score = 134 bits (336), Expect(2) = 3e-42
Identities = 73/196 (37%), Positives = 112/196 (57%)
Frame = +1
Query: 442 AQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKF 621
A KYA + C+P +A M +F PR+S P F+ + ++ PPFG +
Sbjct: 74 ATKYAN-FSEGACKPGYASAMMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 131
Query: 622 SSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPV 801
+ ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+VIRLNSAPV
Sbjct: 132 DNLIKAILSVTKEYRLTPALDSLHCRRCIIVGNGGVLANKSLGSRIDDYDIVIRLNSAPV 191
Query: 802 EGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWV 981
+G+ VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E +
Sbjct: 192 KGFERDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVS--A 249
Query: 982 RLFFWKAVAEKIHYSP 1029
FWK+VA ++ P
Sbjct: 250 SDGFWKSVATRVPKEP 265
Score = 57.4 bits (137), Expect(2) = 3e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 262 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 319
Query: 1197 GFGY 1208
GFGY
Sbjct: 320 GFGY 323
>ref|NP_033204.2| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 4 [Mus musculus].
Length = 333
Score = 112 bits (281), Expect(2) = 3e-32
Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 2/179 (1%)
Frame = +1
Query: 469 QKECRPHFAKRSMAQLFGPRYSTDLPPFVT-KAPLGSKAESKYDPPFGFRKFSSKVQALL 645
++ C A+R +++FG R S + P F+ K K S Y+ PFG K S + +
Sbjct: 43 KEPCFQGEAERQASKIFGNR-SREQPIFLQLKDYFWVKTPSTYELPFG-TKGSEDLLLRV 100
Query: 646 ELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVG 825
+ + PE + + CRRCVV+G+G L LG +N++DVVIRLN+APV GY VG
Sbjct: 101 LAITSYSIPESIKSLECRRCVVVGNGHRLRNSSLGGVINKYDVVIRLNNAPVAGYEGDVG 160
Query: 826 NKTTIRMTYPEGAPLS-DLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWK 999
+KTTIR+ YPE A +E + L V V FK++DF+W++ ++ ++ VR FWK
Sbjct: 161 SKTTIRLFYPESAHFDPKIENNPDTLLVLVAFKAMDFHWIETILSDKKR---VRKGFWK 216
Score = 45.1 bits (105), Expect(2) = 3e-32
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +3
Query: 1020 LQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLPG 1199
+ PK RILNP + + A +L Q R + P G++A+ LA HLCD + + G
Sbjct: 224 VNPKQVRILNPFFMEIAADKLLSLPIQQPR---KIKQKPTTGLLAITLALHLCDLVHIAG 280
Query: 1200 FGY 1208
FGY
Sbjct: 281 FGY 283
>ref|NP_061254.1| type 2 lactosamine alpha-2,3-sialyltransferase [Mus musculus].
Length = 329
Score = 96.3 bits (238), Expect(2) = 9e-26
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Frame = +1
Query: 541 LPPFVTKAPL----GSKAESKYDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCV 708
L PF+ +A + + P+G + F + + L L D + C+RCV
Sbjct: 60 LYPFLCRADFIKVAAMSGTNNFPLPYGIKTFETYFSSALSKLQSCDLFDEFDRVPCKRCV 119
Query: 709 VIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYY 888
V+G+GG+L LG ++ +DV+IR+N+ PV G+ E VG +TT R+ YPE Y
Sbjct: 120 VVGNGGVLKNKTLGATIDSYDVIIRMNNGPVLGHEEEVGTRTTFRLFYPESVFSDSSHYD 179
Query: 889 SNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWKAVAEKIHY 1023
N V V+FK D WL ++ + + FWK A K+ Y
Sbjct: 180 PNTTAVLVVFKPQDLRWLVEILLGKKIN---TQGFWKTPALKLIY 221
Score = 39.7 bits (91), Expect(2) = 9e-26
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 1038 RILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLPGFGY 1208
RIL+P E AF +L++ + + + P G+IA+ +A H+C E+ L GF Y
Sbjct: 227 RILDPYITSEAAFQMLRFPRVFPK--DQKPKHPTTGIIAITMAFHICSEVHLAGFKY 281
>ref|NP_033205.2| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Mus musculus].
Length = 350
Score = 73.6 bits (179), Expect = 3e-13
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 20/227 (8%)
Frame = +1
Query: 355 ILYILKLNYTTEECDMKKMHYVDPD------RIKRAQKYAQ-QVLQKE--------CRPH 489
+++I+ L +T M + Y+D R+K Y+ Q L KE C
Sbjct: 16 LVFIMSLLFTYSHHSMATLPYLDSGALGGTHRVKLVPGYSGLQRLGKEGLLGRNCACSRC 75
Query: 490 FAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESK-----YDPPFGFRKFSSKVQALLELL 654
S ++ F + ++ P T+ + + + P F + ++ L +++
Sbjct: 76 MGDASTSEWFDSHFDGNISPVWTRDNMNLPPDVQRWWMMLQPQFKSHNTNEVLEKLFQIV 135
Query: 655 PEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKT 834
P + + CRRC V+G+ G L G G ++ + ++R+N AP G+ + VG++T
Sbjct: 136 PGENPYRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPTVGFEKDVGSRT 195
Query: 835 TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPF 975
T YPE A +N FV V FK++D W+ + + + F
Sbjct: 196 THHFMYPESAK----NLPANVSFVLVPFKALDLMWIASALSTGQIRF 238
>ref|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Mus musculus].
Length = 337
Score = 67.4 bits (163), Expect = 2e-11
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +1
Query: 622 SSKVQALLELLPEHDFPE-HLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAP 798
S V+ L L+P + P + CRRC V+G+ G L GP ++ D V+R+N AP
Sbjct: 111 SDTVKELFRLVPGNVDPMLNKRLVGCRRCAVVGNSGNLKDSSYGPEIDSHDFVLRMNKAP 170
Query: 799 VEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETL 969
G+ VG++TT + YPE S E N V V FK+ D W+ + T+
Sbjct: 171 TVGFEADVGSRTTHHLVYPE----SFRELGENVNMVLVPFKTTDLQWVISATTTGTI 223
>ref|NP_766417.1| beta-galactoside alpha-2,6-sialyltransferase 2 [Mus musculus].
Length = 438
Score = 57.4 bits (137), Expect = 2e-08
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 29/143 (20%)
Frame = +1
Query: 703 CVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPE-----GAP 867
C V+ S G + LG ++ D V+R NSAP GY + VGNKTT+R+ +
Sbjct: 291 CAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTVRIINSQILANPSHH 350
Query: 868 LSDLEYYSNDLFVA-----------VLFKSVDFN----WLQAMVKNETLPFWV--RLFFW 996
D Y + + VA + +K D+N ++Q K T PF++ F W
Sbjct: 351 FIDSALYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRRKYPTQPFYILHPKFIW 410
Query: 997 KA-------VAEKIHYSPNTSGF 1044
+ EKI +P +SGF
Sbjct: 411 QLWDIIQENTREKIQPNPPSSGF 433
>ref|NP_033206.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 [Mus
musculus].
Length = 373
Score = 56.6 bits (135), Expect = 4e-08
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Frame = +1
Query: 586 SKYDPPFGFRKFSSKVQA-LLELLPEHDFPEHLTAK-----SCRRCVVIGSGGILHGLEL 747
S++ P+G++ S +V A L LL + E A SC RC V+G+GGIL+G
Sbjct: 105 SQHKVPYGWQGLSHEVIASTLRLLKSPESGELFGAPRKLPLSCIRCAVVGNGGILNGSRQ 164
Query: 748 GPALNQFDVVIRLNSAPVEGYSEHVGNKTT 837
G ++ D V RLN A EG+ VG KT+
Sbjct: 165 GQKIDAHDYVFRLNGAITEGFERDVGTKTS 194
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,640,685
Number of extensions: 1098511
Number of successful extensions: 3562
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3546
Number of HSP's successfully gapped: 23
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013577
(1208 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003887.3| lactosylceramide alpha-2,3-sialyltransferase is... 491 e-167
Alignment gi|NP_001035902.1| lactosylceramide alpha-2,3-sialyltransferase... 466 e-159
Alignment gi|NP_777623.2| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 134 3e-42
Alignment gi|NP_777628.2| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 134 3e-42
Alignment gi|NP_777631.2| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 134 3e-42
Alignment gi|NP_777624.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 133 4e-42
Alignment gi|NP_006270.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 133 4e-42
Alignment gi|NP_777629.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 133 4e-42
Alignment gi|NP_006269.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 110 9e-32
Alignment gi|NP_777626.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 127 2e-29
>ref|NP_003887.3| lactosylceramide alpha-2,3-sialyltransferase isoform 1 [Homo
sapiens].
Length = 418
Score = 491 bits (1265), Expect(2) = e-167
Identities = 248/305 (81%), Positives = 254/305 (83%)
Frame = +1
Query: 115 MRTKASGCTERRPLQPQTEXXXXXXXXXXXMPSESNCVKLRSDRARPSLPWYPRAQSKMR 294
MRTKA+GC ERRPLQP+TE MPSE VKLRSD +RPSL WY RAQSKMR
Sbjct: 1 MRTKAAGCAERRPLQPRTEAAAAPAGRA--MPSEYTYVKLRSDCSRPSLQWYTRAQSKMR 58
Query: 295 RPSXXXXXXXXXXXXVFGVWILYILKLNYTTEECDMKKMHYVDPDRIKRAQKYAQQVLQK 474
RPS VFGVWILYILKLNYTTEECDMKKMHYVDPD +KRAQKYAQQVLQK
Sbjct: 59 RPSLLLKDILKCTLLVFGVWILYILKLNYTTEECDMKKMHYVDPDHVKRAQKYAQQVLQK 118
Query: 475 ECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKFSSKVQALLELL 654
ECRP FAK SMA LF RYS DL PFV KAP S+AESKYDPPFGFRKFSSKVQ LLELL
Sbjct: 119 ECRPKFAKTSMALLFEHRYSVDLLPFVQKAPKDSEAESKYDPPFGFRKFSSKVQTLLELL 178
Query: 655 PEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVGNKT 834
PEHD PEHL AK+CRRCVVIGSGGILHGLELG LNQFDVVIRLNSAPVEGYSEHVGNKT
Sbjct: 179 PEHDLPEHLKAKTCRRCVVIGSGGILHGLELGHTLNQFDVVIRLNSAPVEGYSEHVGNKT 238
Query: 835 TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWKAVAEK 1014
TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVK ETLPFWVRLFFWK VAEK
Sbjct: 239 TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKKETLPFWVRLFFWKQVAEK 298
Query: 1015 IHYSP 1029
I P
Sbjct: 299 IPLQP 303
Score = 116 bits (291), Expect(2) = e-167
Identities = 55/66 (83%), Positives = 59/66 (89%)
Frame = +3
Query: 1011 KNPLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEIS 1190
K PLQPKHFRILNPV +ETAFDILQYS+PQSRFWGR NVP +GVIAVVLATHLCDE+S
Sbjct: 298 KIPLQPKHFRILNPVIIKETAFDILQYSEPQSRFWGRDKNVPTIGVIAVVLATHLCDEVS 357
Query: 1191 LPGFGY 1208
L GFGY
Sbjct: 358 LAGFGY 363
>ref|NP_001035902.1| lactosylceramide alpha-2,3-sialyltransferase isoform 2 [Homo
sapiens].
Length = 395
Score = 466 bits (1198), Expect(2) = e-159
Identities = 232/275 (84%), Positives = 236/275 (85%)
Frame = +1
Query: 205 MPSESNCVKLRSDRARPSLPWYPRAQSKMRRPSXXXXXXXXXXXXVFGVWILYILKLNYT 384
MPSE VKLRSD +RPSL WY RAQSKMRRPS VFGVWILYILKLNYT
Sbjct: 6 MPSEYTYVKLRSDCSRPSLQWYTRAQSKMRRPSLLLKDILKCTLLVFGVWILYILKLNYT 65
Query: 385 TEECDMKKMHYVDPDRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKA 564
TEECDMKKMHYVDPD +KRAQKYAQQVLQKECRP FAK SMA LF RYS DL PFV KA
Sbjct: 66 TEECDMKKMHYVDPDHVKRAQKYAQQVLQKECRPKFAKTSMALLFEHRYSVDLLPFVQKA 125
Query: 565 PLGSKAESKYDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLE 744
P S+AESKYDPPFGFRKFSSKVQ LLELLPEHD PEHL AK+CRRCVVIGSGGILHGLE
Sbjct: 126 PKDSEAESKYDPPFGFRKFSSKVQTLLELLPEHDLPEHLKAKTCRRCVVIGSGGILHGLE 185
Query: 745 LGPALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKS 924
LG LNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKS
Sbjct: 186 LGHTLNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKS 245
Query: 925 VDFNWLQAMVKNETLPFWVRLFFWKAVAEKIHYSP 1029
VDFNWLQAMVK ETLPFWVRLFFWK VAEKI P
Sbjct: 246 VDFNWLQAMVKKETLPFWVRLFFWKQVAEKIPLQP 280
Score = 116 bits (291), Expect(2) = e-159
Identities = 55/66 (83%), Positives = 59/66 (89%)
Frame = +3
Query: 1011 KNPLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEIS 1190
K PLQPKHFRILNPV +ETAFDILQYS+PQSRFWGR NVP +GVIAVVLATHLCDE+S
Sbjct: 275 KIPLQPKHFRILNPVIIKETAFDILQYSEPQSRFWGRDKNVPTIGVIAVVLATHLCDEVS 334
Query: 1191 LPGFGY 1208
L GFGY
Sbjct: 335 LAGFGY 340
>ref|NP_777623.2| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform a [Homo sapiens].
Length = 444
Score = 134 bits (336), Expect(2) = 3e-42
Identities = 73/202 (36%), Positives = 115/202 (56%)
Frame = +1
Query: 424 PDRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPP 603
P + A KYA + C+P +A M +F PR+S P F+ + ++ PP
Sbjct: 138 PRPAELATKYAN-FSEGACKPGYASALMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPP 195
Query: 604 FGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIR 783
FG + + ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+V+R
Sbjct: 196 FGIKGQDNLIKAILSVTKEYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 255
Query: 784 LNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNE 963
LNSAPV+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E
Sbjct: 256 LNSAPVKGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKE 315
Query: 964 TLPFWVRLFFWKAVAEKIHYSP 1029
+ FWK+VA ++ P
Sbjct: 316 RVS--ASDGFWKSVATRVPKEP 335
Score = 57.4 bits (137), Expect(2) = 3e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 332 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 389
Query: 1197 GFGY 1208
GFGY
Sbjct: 390 GFGY 393
>ref|NP_777628.2| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform f [Homo sapiens].
Length = 429
Score = 134 bits (336), Expect(2) = 3e-42
Identities = 73/202 (36%), Positives = 115/202 (56%)
Frame = +1
Query: 424 PDRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPP 603
P + A KYA + C+P +A M +F PR+S P F+ + ++ PP
Sbjct: 123 PRPAELATKYAN-FSEGACKPGYASALMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPP 180
Query: 604 FGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIR 783
FG + + ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+V+R
Sbjct: 181 FGIKGQDNLIKAILSVTKEYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 240
Query: 784 LNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNE 963
LNSAPV+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E
Sbjct: 241 LNSAPVKGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKE 300
Query: 964 TLPFWVRLFFWKAVAEKIHYSP 1029
+ FWK+VA ++ P
Sbjct: 301 RVS--ASDGFWKSVATRVPKEP 320
Score = 57.4 bits (137), Expect(2) = 3e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 317 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 374
Query: 1197 GFGY 1208
GFGY
Sbjct: 375 GFGY 378
>ref|NP_777631.2| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform i [Homo sapiens].
Length = 413
Score = 134 bits (336), Expect(2) = 3e-42
Identities = 73/202 (36%), Positives = 115/202 (56%)
Frame = +1
Query: 424 PDRIKRAQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPP 603
P + A KYA + C+P +A M +F PR+S P F+ + ++ PP
Sbjct: 107 PRPAELATKYAN-FSEGACKPGYASALMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPP 164
Query: 604 FGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIR 783
FG + + ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+V+R
Sbjct: 165 FGIKGQDNLIKAILSVTKEYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVR 224
Query: 784 LNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNE 963
LNSAPV+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E
Sbjct: 225 LNSAPVKGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKE 284
Query: 964 TLPFWVRLFFWKAVAEKIHYSP 1029
+ FWK+VA ++ P
Sbjct: 285 RVS--ASDGFWKSVATRVPKEP 304
Score = 57.4 bits (137), Expect(2) = 3e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 301 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 358
Query: 1197 GFGY 1208
GFGY
Sbjct: 359 GFGY 362
>ref|NP_777624.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform b [Homo sapiens].
Length = 390
Score = 133 bits (335), Expect(2) = 4e-42
Identities = 72/196 (36%), Positives = 113/196 (57%)
Frame = +1
Query: 442 AQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKF 621
A KYA + C+P +A M +F PR+S P F+ + ++ PPFG +
Sbjct: 90 ATKYAN-FSEGACKPGYASALMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 147
Query: 622 SSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPV 801
+ ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+V+RLNSAPV
Sbjct: 148 DNLIKAILSVTKEYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPV 207
Query: 802 EGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWV 981
+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E +
Sbjct: 208 KGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVS--A 265
Query: 982 RLFFWKAVAEKIHYSP 1029
FWK+VA ++ P
Sbjct: 266 SDGFWKSVATRVPKEP 281
Score = 57.4 bits (137), Expect(2) = 4e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 278 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 335
Query: 1197 GFGY 1208
GFGY
Sbjct: 336 GFGY 339
>ref|NP_006270.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform j [Homo sapiens].
Length = 375
Score = 133 bits (335), Expect(2) = 4e-42
Identities = 72/196 (36%), Positives = 113/196 (57%)
Frame = +1
Query: 442 AQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKF 621
A KYA + C+P +A M +F PR+S P F+ + ++ PPFG +
Sbjct: 75 ATKYAN-FSEGACKPGYASALMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 132
Query: 622 SSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPV 801
+ ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+V+RLNSAPV
Sbjct: 133 DNLIKAILSVTKEYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPV 192
Query: 802 EGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWV 981
+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E +
Sbjct: 193 KGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVS--A 250
Query: 982 RLFFWKAVAEKIHYSP 1029
FWK+VA ++ P
Sbjct: 251 SDGFWKSVATRVPKEP 266
Score = 57.4 bits (137), Expect(2) = 4e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 263 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 320
Query: 1197 GFGY 1208
GFGY
Sbjct: 321 GFGY 324
>ref|NP_777629.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform g [Homo sapiens].
Length = 359
Score = 133 bits (335), Expect(2) = 4e-42
Identities = 72/196 (36%), Positives = 113/196 (57%)
Frame = +1
Query: 442 AQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKF 621
A KYA + C+P +A M +F PR+S P F+ + ++ PPFG +
Sbjct: 59 ATKYAN-FSEGACKPGYASALMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 116
Query: 622 SSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPV 801
+ ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+V+RLNSAPV
Sbjct: 117 DNLIKAILSVTKEYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPV 176
Query: 802 EGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWV 981
+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E +
Sbjct: 177 KGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVS--A 234
Query: 982 RLFFWKAVAEKIHYSP 1029
FWK+VA ++ P
Sbjct: 235 SDGFWKSVATRVPKEP 250
Score = 57.4 bits (137), Expect(2) = 4e-42
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 1017 PLQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLP 1196
P +P RILNP + QE AF ++ + GRG N+P +G +AV +A H CDE+++
Sbjct: 247 PKEPPEIRILNPYFIQEAAFTLIGLPF-NNGLMGRG-NIPTLGSVAVTMALHGCDEVAVA 304
Query: 1197 GFGY 1208
GFGY
Sbjct: 305 GFGY 308
>ref|NP_006269.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 4 [Homo sapiens].
Length = 329
Score = 110 bits (274), Expect(2) = 9e-32
Identities = 67/179 (37%), Positives = 102/179 (56%), Gaps = 2/179 (1%)
Frame = +1
Query: 469 QKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAP-LGSKAESKYDPPFGFRKFSSKVQALL 645
++ C A+ ++LFG YS D P F+ K S Y+ P+G K S + +
Sbjct: 39 KEPCLQGEAESKASKLFG-NYSRDQPIFLRLEDYFWVKTPSAYELPYG-TKGSEDLLLRV 96
Query: 646 ELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPVEGYSEHVG 825
+ P+++ + CRRCVV+G+G L LG A+N++DVVIRLN+APV GY VG
Sbjct: 97 LAITSSSIPKNIQSLRCRRCVVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVG 156
Query: 826 NKTTIRMTYPEGAPLS-DLEYYSNDLFVAVLFKSVDFNWLQAMVKNETLPFWVRLFFWK 999
+KTT+R+ YPE A +E + L V V FK++DF+W++ ++ ++ VR FWK
Sbjct: 157 SKTTMRLFYPESAHFDPKVENNPDTLLVLVAFKAMDFHWIETILSDKKR---VRKGFWK 212
Score = 46.2 bits (108), Expect(2) = 9e-32
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +3
Query: 1020 LQPKHFRILNPVYYQETAFDILQYSKPQSRFWGRG*NVPPMGVIAVVLATHLCDEISLPG 1199
+ PK RILNP + + A +L Q R + P G++A+ LA HLCD + + G
Sbjct: 220 VNPKQIRILNPFFMEIAADKLLSLPMQQPR---KIKQKPTTGLLAITLALHLCDLVHIAG 276
Query: 1200 FGY 1208
FGY
Sbjct: 277 FGY 279
>ref|NP_777626.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform d [Homo sapiens].
Length = 277
Score = 127 bits (319), Expect = 2e-29
Identities = 66/174 (37%), Positives = 103/174 (59%)
Frame = +1
Query: 442 AQKYAQQVLQKECRPHFAKRSMAQLFGPRYSTDLPPFVTKAPLGSKAESKYDPPFGFRKF 621
A KYA + C+P +A M +F PR+S P F+ + ++ PPFG +
Sbjct: 75 ATKYAN-FSEGACKPGYASALMTAIF-PRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 132
Query: 622 SSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQFDVVIRLNSAPV 801
+ ++A+L + E+ L + CRRC+++G+GG+L LG ++ +D+V+RLNSAPV
Sbjct: 133 DNLIKAILSVTKEYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPV 192
Query: 802 EGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKNE 963
+G+ + VG+KTT+R+TYPEGA +Y + LFV FK DF WL+ +V E
Sbjct: 193 KGFEKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKE 246
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,975,430
Number of extensions: 1309594
Number of successful extensions: 4407
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 4390
Number of HSP's successfully gapped: 31
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013577
(1208 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 690 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 690 bits (348), Expect = 0.0
Identities = 348/348 (100%)
Strand = Plus / Minus
Query: 437 agagagcacagaaatacgcccagcaagtcctgcagaaggagtgccggccccactttgcca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61767903 agagagcacagaaatacgcccagcaagtcctgcagaaggagtgccggccccactttgcca 61767844
Query: 497 agaggtcgatggcacagctcttcggccccaggtacagcacggacttaccgcctttcgtga 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61767843 agaggtcgatggcacagctcttcggccccaggtacagcacggacttaccgcctttcgtga 61767784
Query: 557 caaaagcccccttggggagcaaggctgagtccaagtacgaccctcctttcggattccgaa 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61767783 caaaagcccccttggggagcaaggctgagtccaagtacgaccctcctttcggattccgaa 61767724
Query: 617 agttctccagtaaagtccaggccctcttggaactcttgcctgagcatgactttcctgaac 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61767723 agttctccagtaaagtccaggccctcttggaactcttgcctgagcatgactttcctgaac 61767664
Query: 677 acttgacagccaagagctgtaggcgttgtgtggtcatcggaagcggtggaatcctccacg 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61767663 acttgacagccaagagctgtaggcgttgtgtggtcatcggaagcggtggaatcctccacg 61767604
Query: 737 ggctagagctgggcccagccctgaaccagttcgacgtggtgataaggt 784
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61767603 ggctagagctgggcccagccctgaaccagttcgacgtggtgataaggt 61767556
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 781 aggttaaacagtgcaccagttgaaggatattcagagcatgttggaaataaaactactata 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61762627 aggttaaacagtgcaccagttgaaggatattcagagcatgttggaaataaaactactata 61762568
Query: 841 aggatgacttacccagagggggcaccactgtctgaccttgaatattattccaatgacttg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61762567 aggatgacttacccagagggggcaccactgtctgaccttgaatattattccaatgacttg 61762508
Query: 901 tttgttgctgttttatttaagagtgttgacttcaactggcttcaggcaatggtcaaaaac 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61762507 tttgttgctgttttatttaagagtgttgacttcaactggcttcaggcaatggtcaaaaac 61762448
Query: 961 gaaaccctg 969
|||||||||
Sbjct: 61762447 gaaaccctg 61762439
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 201 agcaatgccaagtgagtccaactgtgtgaagctgaggagcgaccgtgcgaggccttcctt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61749398 agcaatgccaagtgagtccaactgtgtgaagctgaggagcgaccgtgcgaggccttcctt 61749457
Query: 261 gccatggtacccccgagcccagagcaagatgagaagaccgagcttgctgttaaaagacat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61749458 gccatggtacccccgagcccagagcaagatgagaagaccgagcttgctgttaaaagacat 61749517
Query: 321 cctcaagt 328
||||||||
Sbjct: 61749518 cctcaagt 61749525
Score = 236 bits (119), Expect = 2e-59
Identities = 122/123 (99%)
Strand = Plus / Plus
Query: 80 agggactggcggcccgcgggctcctgctccctagtatgcggacgaaagcgtcaggctgca 139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61722821 agggactggcggcccgcgggctcccgctccctagtatgcggacgaaagcgtcaggctgca 61722880
Query: 140 ccgagcggcgtcccctgcagccgcaaaccgaggcggcggaggcggcggcacctgccggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61722881 ccgagcggcgtcccctgcagccgcaaaccgaggcggcggaggcggcggcacctgccggcc 61722940
Query: 200 gag 202
|||
Sbjct: 61722941 gag 61722943
Score = 117 bits (59), Expect = 1e-23
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 1126 agaacgtcccaccaatgggtgtcatcgctgtggtcttagccacacatctgtgcgatgaaa 1185
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61834659 agaacgtccccacgattggtgtcatcgctgtggtcttagccacacatctgtgcgatgaag 61834600
Query: 1186 tcagtttaccaggctttggatac 1208
|||||||| ||||||||||||||
Sbjct: 61834599 tcagtttagcaggctttggatac 61834577
Score = 111 bits (56), Expect = 9e-22
Identities = 110/119 (92%), Gaps = 8/119 (6%)
Strand = Plus / Minus
Query: 1006 gcggaaaaaatcc-actacagcccaaacacttcaggattttgaatccagtttattatcaa 1064
||||||||||||| ||||||||| ||||||| ||||||||||| |||||| ||||||||
Sbjct: 61838960 gcggaaaaaatcccactacagcc-aaacact-caggattttga-tccagt--attatcaa 61838906
Query: 1065 -gagactgccttcgacatccttcaatactcaaagcctcagtcaaggttctggggccgag 1122
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 61838905 agagactgccttcgacatccttcaatactcagagcctcagtcaagg-tctggggccgag 61838848
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 gcatctgagccagggagctgatggtcctggactgaat 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 61722742 gcatctgagccagggagctgatggtcctggactgaat 61722778
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,839,001
Number of extensions: 215
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 7
Length of query: 1208
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1187
Effective length of database: 2,808,413,156
Effective search space: 3333586416172
Effective search space used: 3333586416172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)