Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013580
(985 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546531.2| PREDICTED: similar to POU domain class 2, assoc... 432 e-121
>ref|XP_546531.2| PREDICTED: similar to POU domain class 2, associating factor 1
(B-cell-specific coactivator OBF-1) (OCT binding factor
1) (BOB-1) (OCA-B) [Canis familiaris].
Length = 256
Score = 432 bits (1110), Expect = e-121
Identities = 215/256 (83%), Positives = 218/256 (85%), Gaps = 5/256 (1%)
Frame = +1
Query: 130 MLWQKXXXXXXXXXXXXXYQGVRVKEPVKELLRRKRGHASSGAPVAPTAVVLPHQPLATY 309
MLWQK YQGVRVKEPVKELLRRKRGHASSGA V PTAVVLPHQPLATY
Sbjct: 1 MLWQKPTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHASSGAAVTPTAVVLPHQPLATY 60
Query: 310 TTVGPSCLDMEVSASTVTEEGALCTGWLSXXXXXXXXXXXXWTPYTEYVSHEAVSCPYSA 489
TTVGPSCLDMEVSASTVTEEGALC GWLS WTPYTEYVSHEAVSCPYSA
Sbjct: 61 TTVGPSCLDMEVSASTVTEEGALCAGWLSQPGPATLQPLAPWTPYTEYVSHEAVSCPYSA 120
Query: 490 DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAATPTVGPQLEGPEHQAPLTYFPWP 669
DMYVQP+CPSYTVVGPSSVLTYASQPLITNVTTRSAA P VGPQLEGPEHQAPLTYFPWP
Sbjct: 121 DMYVQPMCPSYTVVGPSSVLTYASQPLITNVTTRSAAAPAVGPQLEGPEHQAPLTYFPWP 180
Query: 670 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDVEDPRRTISS-----LLLEEE 834
QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQD+EDPRR ISS LLLEEE
Sbjct: 181 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDMEDPRRAISSLTIDKLLLEEE 240
Query: 835 DSDTYSLNHTLSVEGF 882
D D Y+LNHTLSVEGF
Sbjct: 241 DGDAYALNHTLSVEGF 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,942,130
Number of extensions: 1207022
Number of successful extensions: 6066
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5958
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013580
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013580
(985 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069383.1| POU domain class 2-associating factor 1 [Bos... 432 e-121
>ref|NP_001069383.1| POU domain class 2-associating factor 1 [Bos taurus].
Length = 256
Score = 432 bits (1111), Expect = e-121
Identities = 216/256 (84%), Positives = 217/256 (84%), Gaps = 5/256 (1%)
Frame = +1
Query: 130 MLWQKXXXXXXXXXXXXXYQGVRVKEPVKELLRRKRGHASSGAPVAPTAVVLPHQPLATY 309
MLWQK YQGVRVKEPVKELLRRKRGHASSGA V PTAVVLPHQPLATY
Sbjct: 1 MLWQKPTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHASSGASVTPTAVVLPHQPLATY 60
Query: 310 TTVGPSCLDMEVSASTVTEEGALCTGWLSXXXXXXXXXXXXWTPYTEYVSHEAVSCPYSA 489
TTVGPSCLDMEVSASTVTEEGALC GWLS WTPYTEYVSHEAVSCPYSA
Sbjct: 61 TTVGPSCLDMEVSASTVTEEGALCAGWLSQPAPAALQPLAPWTPYTEYVSHEAVSCPYSA 120
Query: 490 DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAATPTVGPQLEGPEHQAPLTYFPWP 669
DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAA PTVGP LEGPEHQAPLTYFPWP
Sbjct: 121 DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAAAPTVGPPLEGPEHQAPLTYFPWP 180
Query: 670 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDVEDPRR-----TISSLLLEEE 834
QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVL D EDPRR TI LLLEEE
Sbjct: 181 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLPDAEDPRRAIGSLTIDKLLLEEE 240
Query: 835 DSDTYSLNHTLSVEGF 882
DSDTY+LNHTLSVEGF
Sbjct: 241 DSDTYALNHTLSVEGF 256
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,375,043
Number of extensions: 1178435
Number of successful extensions: 5931
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5790
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013580
(985 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129877.2| PREDICTED: POU domain class 2-associating fa... 457 e-129
>ref|XP_003129877.2| PREDICTED: POU domain class 2-associating factor 1-like [Sus
scrofa].
Length = 251
Score = 457 bits (1176), Expect = e-129
Identities = 226/251 (90%), Positives = 226/251 (90%)
Frame = +1
Query: 130 MLWQKXXXXXXXXXXXXXYQGVRVKEPVKELLRRKRGHASSGAPVAPTAVVLPHQPLATY 309
MLWQK YQGVRVKEPVKELLRRKRGHASSGAPVAPTAVVLPHQPLATY
Sbjct: 1 MLWQKPAAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHASSGAPVAPTAVVLPHQPLATY 60
Query: 310 TTVGPSCLDMEVSASTVTEEGALCTGWLSXXXXXXXXXXXXWTPYTEYVSHEAVSCPYSA 489
TTVGPSCLDMEVSASTVTEEGALCTGWLS WTPYTEYVSHEAVSCPYSA
Sbjct: 61 TTVGPSCLDMEVSASTVTEEGALCTGWLSQPAPAALQPLAPWTPYTEYVSHEAVSCPYSA 120
Query: 490 DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAATPTVGPQLEGPEHQAPLTYFPWP 669
DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAATPTVGPQLEGPEHQAPLTYFPWP
Sbjct: 121 DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAATPTVGPQLEGPEHQAPLTYFPWP 180
Query: 670 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDVEDPRRTISSLLLEEEDSDTY 849
QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDVEDPRRTISSLLLEEEDSDTY
Sbjct: 181 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDVEDPRRTISSLLLEEEDSDTY 240
Query: 850 SLNHTLSVEGF 882
SLNHTLSVEGF
Sbjct: 241 SLNHTLSVEGF 251
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,454,681
Number of extensions: 762249
Number of successful extensions: 3738
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3682
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013580
(985 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035266.1| POU domain class 2-associating factor 1 [Mus mu... 409 e-114
>ref|NP_035266.1| POU domain class 2-associating factor 1 [Mus musculus].
Length = 256
Score = 409 bits (1052), Expect = e-114
Identities = 204/256 (79%), Positives = 210/256 (82%), Gaps = 5/256 (1%)
Frame = +1
Query: 130 MLWQKXXXXXXXXXXXXXYQGVRVKEPVKELLRRKRGHASSGAPVAPTAVVLPHQPLATY 309
MLWQK YQGVRVKEPVKELLRRKRGH S GA PTAVVLPHQPLATY
Sbjct: 1 MLWQKSTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHTSVGAAGPPTAVVLPHQPLATY 60
Query: 310 TTVGPSCLDMEVSASTVTEEGALCTGWLSXXXXXXXXXXXXWTPYTEYVSHEAVSCPYSA 489
+TVGPSCLDMEVSASTVTEEG LC GWLS WTPYTEYVSHEAVSCPYS
Sbjct: 61 STVGPSCLDMEVSASTVTEEGTLCAGWLSQPAPATLQPLAPWTPYTEYVSHEAVSCPYST 120
Query: 490 DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAATPTVGPQLEGPEHQAPLTYFPWP 669
DMYVQPVCPSYTVVGPSSVLTYAS PLITNVT RS ATP VGPQLEGPEHQAPLTYFPWP
Sbjct: 121 DMYVQPVCPSYTVVGPSSVLTYASPPLITNVTPRSTATPAVGPQLEGPEHQAPLTYFPWP 180
Query: 670 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDVEDPRRTISS-----LLLEEE 834
QPLSTLPTS+LQYQPPAP L GPQFVQLPISIPEPVLQD++DPRR ISS LLLEEE
Sbjct: 181 QPLSTLPTSSLQYQPPAPTLSGPQFVQLPISIPEPVLQDMDDPRRAISSLTIDKLLLEEE 240
Query: 835 DSDTYSLNHTLSVEGF 882
+S+TY LNHTLSVEGF
Sbjct: 241 ESNTYELNHTLSVEGF 256
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,796,457
Number of extensions: 980119
Number of successful extensions: 4598
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4507
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013580
(985 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006226.2| POU domain class 2-associating factor 1 [Homo s... 418 e-117
>ref|NP_006226.2| POU domain class 2-associating factor 1 [Homo sapiens].
Length = 256
Score = 418 bits (1075), Expect = e-117
Identities = 209/256 (81%), Positives = 212/256 (82%), Gaps = 5/256 (1%)
Frame = +1
Query: 130 MLWQKXXXXXXXXXXXXXYQGVRVKEPVKELLRRKRGHASSGAPVAPTAVVLPHQPLATY 309
MLWQK YQGVRVKEPVKELLRRKRGHASSGA APTAVVLPHQPLATY
Sbjct: 1 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRRKRGHASSGAAPAPTAVVLPHQPLATY 60
Query: 310 TTVGPSCLDMEVSASTVTEEGALCTGWLSXXXXXXXXXXXXWTPYTEYVSHEAVSCPYSA 489
TTVGPSCLDME S S VTEE ALC GWLS WTPYTEYV HEAVSCPYSA
Sbjct: 61 TTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLAPWTPYTEYVPHEAVSCPYSA 120
Query: 490 DMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAATPTVGPQLEGPEHQAPLTYFPWP 669
DMYVQPVCPSYTVVGPSSVLTYAS PLITNVTTRS+ATP VGP LEGPEHQAPLTYFPWP
Sbjct: 121 DMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTRSSATPAVGPPLEGPEHQAPLTYFPWP 180
Query: 670 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDVEDPRR-----TISSLLLEEE 834
QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQD+EDPRR TI LLLEEE
Sbjct: 181 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDMEDPRRAASSLTIDKLLLEEE 240
Query: 835 DSDTYSLNHTLSVEGF 882
DSD Y+LNHTLSVEGF
Sbjct: 241 DSDAYALNHTLSVEGF 256
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,152,720
Number of extensions: 1184181
Number of successful extensions: 5779
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5526
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013580
(985 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 773 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 773 bits (390), Expect = 0.0
Identities = 400/402 (99%), Gaps = 1/402 (0%)
Strand = Plus / Plus
Query: 585 gacgagaagcgccgccacacccacagtggggccccagctggaaggcccagagcaccaggc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43753868 gacgagaagcgccgccacacccacagtggggccccagctggaaggcccagagcaccaggc 43753927
Query: 645 acccctcacctatttcccgtggcctcagcccctgtccacgctgcccacttccactctgca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43753928 acccctcacctatttcccgtggcctcagcccctgtccacgctgcccacttccactctgca 43753987
Query: 705 gtaccagcctccagccccagccctgcctgggccgcagtttgtccagctccccatctccat 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43753988 gtaccagcctccagccccagccctgcctgggccgcagtttgtccagctccccatctccat 43754047
Query: 765 ccctgagccggtccttcaggacgtggaagaccccaggagaaccatcagctccctgcttct 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43754048 ccctgagccggtccttcaggacgtggaagaccccaggagaaccatcagctccctgcttct 43754107
Query: 825 ggaggaagaggatagtgatacctactcgctcaaccacacgctttccgtggaaggctttta 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43754108 ggaggaagaggatagtgatacctactcgctcaaccacacgctttccgtggaaggctttta 43754167
Query: 885 aggctggctcccacctgaaaatcttgttcccagaaactgggatttg-aaatgaccctgag 943
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 43754168 aggctggctcccacctgaaaatcttgttcccagaaactgggatttgaaaatgaccctgag 43754227
Query: 944 ggagttcccgtgtggctcagcacattaaggattcaagctgtc 985
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 43754228 ggagttcccgtgtggctcagcacattaaggattcgagctgtc 43754269
Score = 773 bits (390), Expect = 0.0
Identities = 400/402 (99%), Gaps = 1/402 (0%)
Strand = Plus / Plus
Query: 585 gacgagaagcgccgccacacccacagtggggccccagctggaaggcccagagcaccaggc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43865655 gacgagaagcgccgccacacccacagtggggccccagctggaaggcccagagcaccaggc 43865714
Query: 645 acccctcacctatttcccgtggcctcagcccctgtccacgctgcccacttccactctgca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43865715 acccctcacctatttcccgtggcctcagcccctgtccacgctgcccacttccactctgca 43865774
Query: 705 gtaccagcctccagccccagccctgcctgggccgcagtttgtccagctccccatctccat 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43865775 gtaccagcctccagccccagccctgcctgggccgcagtttgtccagctccccatctccat 43865834
Query: 765 ccctgagccggtccttcaggacgtggaagaccccaggagaaccatcagctccctgcttct 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43865835 ccctgagccggtccttcaggacgtggaagaccccaggagaaccatcagctccctgcttct 43865894
Query: 825 ggaggaagaggatagtgatacctactcgctcaaccacacgctttccgtggaaggctttta 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43865895 ggaggaagaggatagtgatacctactcgctcaaccacacgctttccgtggaaggctttta 43865954
Query: 885 aggctggctcccacctgaaaatcttgttcccagaaactgggatttg-aaatgaccctgag 943
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 43865955 aggctggctcccacctgaaaatcttgttcccagaaactgggatttgaaaatgaccctgag 43866014
Query: 944 ggagttcccgtgtggctcagcacattaaggattcaagctgtc 985
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 43866015 ggagttcccgtgtggctcagcacattaaggattcgagctgtc 43866056
Score = 529 bits (267), Expect = e-148
Identities = 267/267 (100%)
Strand = Plus / Plus
Query: 319 ggtccctcctgcctcgacatggaggtctctgcttccacagtgacggaggagggggcgctg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43802836 ggtccctcctgcctcgacatggaggtctctgcttccacagtgacggaggagggggcgctg 43802895
Query: 379 tgcaccggctggctctcccagcccgccccggccgccctccagcccctagccccgtggacg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43802896 tgcaccggctggctctcccagcccgccccggccgccctccagcccctagccccgtggacg 43802955
Query: 439 ccctacactgagtatgtgtcccacgaggctgtcagctgcccctactcagctgacatgtat 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43802956 ccctacactgagtatgtgtcccacgaggctgtcagctgcccctactcagctgacatgtat 43803015
Query: 499 gtgcagcccgtgtgtcccagctacacggtggtggggccctcctctgtgctgacctacgcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43803016 gtgcagcccgtgtgtcccagctacacggtggtggggccctcctctgtgctgacctacgcc 43803075
Query: 559 tcccagccgctcatcaccaatgtcacg 585
|||||||||||||||||||||||||||
Sbjct: 43803076 tcccagccgctcatcaccaatgtcacg 43803102
Score = 529 bits (267), Expect = e-148
Identities = 267/267 (100%)
Strand = Plus / Plus
Query: 319 ggtccctcctgcctcgacatggaggtctctgcttccacagtgacggaggagggggcgctg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43862795 ggtccctcctgcctcgacatggaggtctctgcttccacagtgacggaggagggggcgctg 43862854
Query: 379 tgcaccggctggctctcccagcccgccccggccgccctccagcccctagccccgtggacg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43862855 tgcaccggctggctctcccagcccgccccggccgccctccagcccctagccccgtggacg 43862914
Query: 439 ccctacactgagtatgtgtcccacgaggctgtcagctgcccctactcagctgacatgtat 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43862915 ccctacactgagtatgtgtcccacgaggctgtcagctgcccctactcagctgacatgtat 43862974
Query: 499 gtgcagcccgtgtgtcccagctacacggtggtggggccctcctctgtgctgacctacgcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43862975 gtgcagcccgtgtgtcccagctacacggtggtggggccctcctctgtgctgacctacgcc 43863034
Query: 559 tcccagccgctcatcaccaatgtcacg 585
|||||||||||||||||||||||||||
Sbjct: 43863035 tcccagccgctcatcaccaatgtcacg 43863061
Score = 280 bits (141), Expect = 1e-72
Identities = 144/145 (99%)
Strand = Plus / Plus
Query: 1 ctttaaaaagccgaggaaacagccgctgaggaggcagtggctacactggaggcaagcaca 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 43842915 ctttaaaaagccgaggaaacagccgctgagcaggcagtggctacactggaggcaagcaca 43842974
Query: 61 cccaggtctcacattaaagaagccaaactgtctgcttcaaagagaaaaggcaacatcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43842975 cccaggtctcacattaaagaagccaaactgtctgcttcaaagagaaaaggcaacatcctg 43843034
Query: 121 tcgcaggccatgctctggcaaaaac 145
|||||||||||||||||||||||||
Sbjct: 43843035 tcgcaggccatgctctggcaaaaac 43843059
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 146 ccgcagctccagagcaggccccggcaccaccccggccgtaccagggtgtgcgcgtgaagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43802109 ccgcagctccagagcaggccccggcaccaccccggccgtaccagggtgtgcgcgtgaagg 43802168
Query: 206 agccggtcaaagagctgctgcggaggaaacgaggccatgccagcagcggggcacctgtgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43802169 agccggtcaaagagctgctgcggaggaaacgaggccatgccagcagcggggcacctgtgg 43802228
Query: 266 caccaaccgcggtg 279
||||||||||||||
Sbjct: 43802229 caccaaccgcggtg 43802242
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 146 ccgcagctccagagcaggccccggcaccaccccggccgtaccagggtgtgcgcgtgaagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43862068 ccgcagctccagagcaggccccggcaccaccccggccgtaccagggtgtgcgcgtgaagg 43862127
Query: 206 agccggtcaaagagctgctgcggaggaaacgaggccatgccagcagcggggcacctgtgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43862128 agccggtcaaagagctgctgcggaggaaacgaggccatgccagcagcggggcacctgtgg 43862187
Query: 266 caccaaccgcggtg 279
||||||||||||||
Sbjct: 43862188 caccaaccgcggtg 43862201
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 276 ggtggtgctgccccatcagcccctggcgacctacaccacagtgggt 321
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43802703 ggtggtgctgccccatcagcccctggcgacctacaccacagtgggt 43802748
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 276 ggtggtgctgccccatcagcccctggcgacctacaccacagtgggt 321
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43862662 ggtggtgctgccccatcagcccctggcgacctacaccacagtgggt 43862707
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,077,466
Number of extensions: 3251
Number of successful extensions: 3251
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3249
Number of HSP's successfully gapped: 9
Length of query: 985
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 964
Effective length of database: 2,808,413,156
Effective search space: 2707310282384
Effective search space used: 2707310282384
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)