Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013582
(970 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854290.1| PREDICTED: similar to CG15747-PA isoform 1 [Can... 371 e-103
Alignment gi|XP_868363.1| PREDICTED: similar to CG15747-PA isoform 4 [Can... 363 e-100
Alignment gi|XP_868360.1| PREDICTED: similar to CG15747-PA isoform 3 [Can... 296 3e-80
Alignment gi|XP_868357.1| PREDICTED: similar to CG15747-PA isoform 2 [Can... 296 3e-80
>ref|XP_854290.1| PREDICTED: similar to CG15747-PA isoform 1 [Canis familiaris].
Length = 553
Score = 371 bits (952), Expect = e-103
Identities = 198/276 (71%), Positives = 208/276 (75%), Gaps = 1/276 (0%)
Frame = +1
Query: 49 MAIPGRQYGLILPKKAQQLHPVLQKPSVFGNXXXXXXXXXXXXXLQREAAKKQAMKQTKL 228
MAIPGRQYGLILPKKAQQLHPVLQKPSVFGN LQREAAKKQAMKQTKL
Sbjct: 1 MAIPGRQYGLILPKKAQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL 60
Query: 229 EIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAVXXXXXXXXX 408
EIQKALAEDSTVYEYDSIYDEMQKK+EE+NP+LLLGKDRKPKYIHNLLKAV
Sbjct: 61 EIQKALAEDSTVYEYDSIYDEMQKKREENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEK 120
Query: 409 XXXXXXXXXXXXXXGEFDDKEAFVTSAYKKKLQXXXXXXXXXXXXXXXXXXXDVTKQRDL 588
GEFDDKEAFVTSAYKKKLQ DVTKQ+DL
Sbjct: 121 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEARLDVTKQKDL 180
Query: 589 SGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENR-IPHEKCSLQTVVK 765
SGFYRHLLNQAVGEEEVPTCSFREARS IKEEKS+GY DE+SSENR IP EKCSLQTVV+
Sbjct: 181 SGFYRHLLNQAVGEEEVPTCSFREARSEIKEEKSRGYSDELSSENRIIPREKCSLQTVVQ 240
Query: 766 VEENPDADSDLDAKSSEDDAVEENKGNCRREKGTET 873
V ENPDADSD DA S +D+ E NK NCRR+K TET
Sbjct: 241 VGENPDADSDFDANSEDDEMEENNKVNCRRKKITET 276
>ref|XP_868363.1| PREDICTED: similar to CG15747-PA isoform 4 [Canis familiaris].
Length = 563
Score = 363 bits (931), Expect = e-100
Identities = 198/286 (69%), Positives = 208/286 (72%), Gaps = 11/286 (3%)
Frame = +1
Query: 49 MAIPGRQ----------YGLILPKKAQQLHPVLQKPSVFGNXXXXXXXXXXXXXLQREAA 198
MAIPGRQ YGLILPKKAQQLHPVLQKPSVFGN LQREAA
Sbjct: 1 MAIPGRQNVVLRNHRKGYGLILPKKAQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAA 60
Query: 199 KKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKA 378
KKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKK+EE+NP+LLLGKDRKPKYIHNLLKA
Sbjct: 61 KKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKREENNPKLLLGKDRKPKYIHNLLKA 120
Query: 379 VXXXXXXXXXXXXXXXXXXXXXXXGEFDDKEAFVTSAYKKKLQXXXXXXXXXXXXXXXXX 558
V GEFDDKEAFVTSAYKKKLQ
Sbjct: 121 VEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEA 180
Query: 559 XXDVTKQRDLSGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENR-IPH 735
DVTKQ+DLSGFYRHLLNQAVGEEEVPTCSFREARS IKEEKS+GY DE+SSENR IP
Animal-Genome cDNA 20110601C-013582
Animal-Genome cDNA 20110601C-013582
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013582
(970 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039927.1| nuclear speckle splicing regulatory protein ... 382 e-106
>ref|NP_001039927.1| nuclear speckle splicing regulatory protein 1 [Bos taurus].
Length = 559
Score = 382 bits (981), Expect = e-106
Identities = 206/277 (74%), Positives = 211/277 (76%), Gaps = 1/277 (0%)
Frame = +1
Query: 49 MAIPGRQYGLILPKKAQQLHPVLQKPSVFGNXXXXXXXXXXXXX-LQREAAKKQAMKQTK 225
MAIPGRQYGLILPKKAQQLHPVLQKPSVFGN LQREAAKKQAMKQTK
Sbjct: 1 MAIPGRQYGLILPKKAQQLHPVLQKPSVFGNDSDDDDDETSVSESLQREAAKKQAMKQTK 60
Query: 226 LEIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAVXXXXXXXX 405
LEIQKALAEDSTVYEYDSIYDEMQKKKEESNP+LLLGKDRKPKYIHNLLKAV
Sbjct: 61 LEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQE 120
Query: 406 XXXXXXXXXXXXXXXGEFDDKEAFVTSAYKKKLQXXXXXXXXXXXXXXXXXXXDVTKQRD 585
GEFDDKEAFVTSAYKKKLQ DVTKQRD
Sbjct: 121 KRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRD 180
Query: 586 LSGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENRIPHEKCSLQTVVK 765
LSGFYRHLLNQAVGEEEVPTCSFREARS IKEEKSKGY DEVSSE+RIP E C QT VK
Sbjct: 181 LSGFYRHLLNQAVGEEEVPTCSFREARSEIKEEKSKGYSDEVSSESRIPPENCIRQTGVK 240
Query: 766 VEENPDADSDLDAKSSEDDAVEENKGNCRREKGTETL 876
VEENPDADSD DAKSSE+D +E +KGNCRREKGTETL
Sbjct: 241 VEENPDADSDFDAKSSENDEMEGDKGNCRREKGTETL 277
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,941,634
Number of extensions: 589454
Number of successful extensions: 1674
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1651
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 34 (17.7 bits)
Sbjct: 181 RLDVTKQKDLSGFYRHLLNQAVGEEEVPTCSFREARSEIKEEKSRGYSDELSSENRIIPR 240
Query: 736 EKCSLQTVVKVEENPDADSDLDAKSSEDDAVEENKGNCRREKGTET 873
EKCSLQTVV+V ENPDADSD DA S +D+ E NK NCRR+K TET
Sbjct: 241 EKCSLQTVVQVGENPDADSDFDANSEDDEMEENNKVNCRRKKITET 286
>ref|XP_868360.1| PREDICTED: similar to CG15747-PA isoform 3 [Canis familiaris].
Length = 499
Score = 296 bits (757), Expect = 3e-80
Identities = 157/222 (70%), Positives = 167/222 (75%), Gaps = 1/222 (0%)
Frame = +1
Query: 211 MKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAVXXX 390
MKQTKLEIQKALAEDSTVYEYDSIYDEMQKK+EE+NP+LLLGKDRKPKYIHNLLKAV
Sbjct: 1 MKQTKLEIQKALAEDSTVYEYDSIYDEMQKKREENNPKLLLGKDRKPKYIHNLLKAVEIR 60
Query: 391 XXXXXXXXXXXXXXXXXXXXGEFDDKEAFVTSAYKKKLQXXXXXXXXXXXXXXXXXXXDV 570
GEFDDKEAFVTSAYKKKLQ DV
Sbjct: 61 KKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEARLDV 120
Query: 571 TKQRDLSGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENR-IPHEKCS 747
TKQ+DLSGFYRHLLNQAVGEEEVPTCSFREARS IKEEKS+GY DE+SSENR IP EKCS
Sbjct: 121 TKQKDLSGFYRHLLNQAVGEEEVPTCSFREARSEIKEEKSRGYSDELSSENRIIPREKCS 180
Query: 748 LQTVVKVEENPDADSDLDAKSSEDDAVEENKGNCRREKGTET 873
LQTVV+V ENPDADSD DA S +D+ E NK NCRR+K TET
Sbjct: 181 LQTVVQVGENPDADSDFDANSEDDEMEENNKVNCRRKKITET 222
>ref|XP_868357.1| PREDICTED: similar to CG15747-PA isoform 2 [Canis familiaris].
Length = 499
Score = 296 bits (757), Expect = 3e-80
Identities = 157/222 (70%), Positives = 167/222 (75%), Gaps = 1/222 (0%)
Frame = +1
Query: 211 MKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAVXXX 390
MKQTKLEIQKALAEDSTVYEYDSIYDEMQKK+EE+NP+LLLGKDRKPKYIHNLLKAV
Sbjct: 1 MKQTKLEIQKALAEDSTVYEYDSIYDEMQKKREENNPKLLLGKDRKPKYIHNLLKAVEIR 60
Query: 391 XXXXXXXXXXXXXXXXXXXXGEFDDKEAFVTSAYKKKLQXXXXXXXXXXXXXXXXXXXDV 570
GEFDDKEAFVTSAYKKKLQ DV
Sbjct: 61 KKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEARLDV 120
Query: 571 TKQRDLSGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENR-IPHEKCS 747
TKQ+DLSGFYRHLLNQAVGEEEVPTCSFREARS IKEEKS+GY DE+SSENR IP EKCS
Sbjct: 121 TKQKDLSGFYRHLLNQAVGEEEVPTCSFREARSEIKEEKSRGYSDELSSENRIIPREKCS 180
Query: 748 LQTVVKVEENPDADSDLDAKSSEDDAVEENKGNCRREKGTET 873
LQTVV+V ENPDADSD DA S +D+ E NK NCRR+K TET
Sbjct: 181 LQTVVQVGENPDADSDFDANSEDDEMEENNKVNCRRKKITET 222
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,210,438
Number of extensions: 608854
Number of successful extensions: 1715
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1699
Number of HSP's successfully gapped: 4
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013582
(970 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131832.1| PREDICTED: coiled-coil domain-containing pro... 433 e-122
>ref|XP_003131832.1| PREDICTED: coiled-coil domain-containing protein 55-like [Sus
scrofa].
Length = 554
Score = 433 bits (1113), Expect = e-122
Identities = 231/307 (75%), Positives = 231/307 (75%)
Frame = +1
Query: 49 MAIPGRQYGLILPKKAQQLHPVLQKPSVFGNXXXXXXXXXXXXXLQREAAKKQAMKQTKL 228
MAIPGRQYGLILPKKAQQLHPVLQKPSVFGN LQREAAKKQAMKQTKL
Sbjct: 1 MAIPGRQYGLILPKKAQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL 60
Query: 229 EIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAVXXXXXXXXX 408
EIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAV
Sbjct: 61 EIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAVEIRKKEQEK 120
Query: 409 XXXXXXXXXXXXXXGEFDDKEAFVTSAYKKKLQXXXXXXXXXXXXXXXXXXXDVTKQRDL 588
GEFDDKEAFVTSAYKKKLQ DVTKQRDL
Sbjct: 121 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDL 180
Query: 589 SGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENRIPHEKCSLQTVVKV 768
SGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENRIPHEKCSLQTVVKV
Sbjct: 181 SGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENRIPHEKCSLQTVVKV 240
Query: 769 EENPDADSDLDAKSSEDDAVEENKGNCRREKGTETLKXXXXXXXXXXXXXXXXXXXXXGT 948
EENPDADSDLDAKSSEDDAVEENKGNCRREKGTETLK GT
Sbjct: 241 EENPDADSDLDAKSSEDDAVEENKGNCRREKGTETLKNNSKHHRNHTHSRSSSEEREHGT 300
Query: 949 KHYAKST 969
KHYAKST
Sbjct: 301 KHYAKST 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,935,399
Number of extensions: 377362
Number of successful extensions: 1027
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1023
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013582
(970 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012309.1| nuclear speckle splicing regulatory protein ... 307 7e-84
>ref|NP_001012309.1| nuclear speckle splicing regulatory protein 1 [Mus musculus].
Length = 542
Score = 307 bits (787), Expect = 7e-84
Identities = 170/278 (61%), Positives = 188/278 (67%), Gaps = 1/278 (0%)
Frame = +1
Query: 49 MAIPGRQYGLILPKKAQQLHPVLQKPSVFGNXXXXXXXXXXXXXLQREAAKKQAMKQTKL 228
MAIPGRQYGLILPKK Q LH VLQKPSVFG+ LQREAAKKQAMKQTKL
Sbjct: 1 MAIPGRQYGLILPKKTQPLHRVLQKPSVFGSDSDDDETSVSES-LQREAAKKQAMKQTKL 59
Query: 229 EIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAVXXXXXXXXX 408
EIQKALAEDSTVYEYDS+YDEMQKKKEE+NP+LL GKDRKPKYIHNLLKAV
Sbjct: 60 EIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEK 119
Query: 409 XXXXXXXXXXXXXXGEFDDKEAFVTSAYKKKLQXXXXXXXXXXXXXXXXXXXDVTKQRDL 588
GEFDDKEAFVTSAYKKKL+ DVTKQ+DL
Sbjct: 120 RMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDL 179
Query: 589 SGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENRIPHEKCSLQT-VVK 765
SGFYRHLLNQAVGEE P SFREAR+ IKEEK +GYPDE +SE+R P + C LQ +
Sbjct: 180 SGFYRHLLNQAVGEEAAPKSSFREARTVIKEEKLRGYPDETNSESRPPQQSCVLQRGAQE 239
Query: 766 VEENPDADSDLDAKSSEDDAVEENKGNCRREKGTETLK 879
EENPDAD + D +SSED ++K R E ++K
Sbjct: 240 AEENPDADREFDDESSEDGEKRDHKVKSRGEDTGASMK 277
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,734,040
Number of extensions: 525906
Number of successful extensions: 1430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1415
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013582
(970 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115517.1| nuclear speckle splicing regulatory protein 1 i... 374 e-104
>ref|NP_115517.1| nuclear speckle splicing regulatory protein 1 isoform 1 [Homo
sapiens].
Length = 558
Score = 374 bits (960), Expect = e-104
Identities = 197/275 (71%), Positives = 207/275 (75%)
Frame = +1
Query: 49 MAIPGRQYGLILPKKAQQLHPVLQKPSVFGNXXXXXXXXXXXXXLQREAAKKQAMKQTKL 228
MAIPGRQYGLILPKK QQLHPVLQKPSVFGN LQREAAKKQAMKQTKL
Sbjct: 1 MAIPGRQYGLILPKKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL 60
Query: 229 EIQKALAEDSTVYEYDSIYDEMQKKKEESNPRLLLGKDRKPKYIHNLLKAVXXXXXXXXX 408
EIQKALAED+TVYEYDSIYDEMQKKKEE+NP+LLLGKDRKPKYIHNLLKAV
Sbjct: 61 EIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEK 120
Query: 409 XXXXXXXXXXXXXXGEFDDKEAFVTSAYKKKLQXXXXXXXXXXXXXXXXXXXDVTKQRDL 588
GEFDDKEAFVTSAYKKKLQ DVTKQ+DL
Sbjct: 121 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDL 180
Query: 589 SGFYRHLLNQAVGEEEVPTCSFREARSGIKEEKSKGYPDEVSSENRIPHEKCSLQTVVKV 768
SGFYRHLLNQAVGEEEVP CSFREARSGIKEEKS+G+ +EVSS+NRIP EKC LQT VKV
Sbjct: 181 SGFYRHLLNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKV 240
Query: 769 EENPDADSDLDAKSSEDDAVEENKGNCRREKGTET 873
EENPDADSD DAKSS DD +EE + NCRREK ET
Sbjct: 241 EENPDADSDFDAKSSADDEIEETRVNCRREKVIET 275
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.308 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,740,286
Number of extensions: 605989
Number of successful extensions: 1798
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1792
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013582
(970 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 601 e-169
Sscrofa_Chr13 80 3e-12
>Sscrofa_Chr12
|| Length = 63588571
Score = 601 bits (303), Expect = e-169
Identities = 306/307 (99%)
Strand = Plus / Minus
Query: 664 aggtctgggataaaagaagagaaatcaaagggatatcctgatgaagtaagttcagagaac 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48230305 aggtctgggataaaagaagagaaatcaaagggatatcctgatgaagtaagttcagagaac 48230246
Query: 724 agaatacctcatgagaaatgcagtctccaaactgttgtgaaagttgaggaaaaccctgat 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48230245 agaatacctcatgagaaatgcagtctccaaactgttgtgaaagttgaggaaaaccctgat 48230186
Query: 784 gcagacagtgacttggatgctaagagcagtgaggatgatgcagtggaagaaaataaaggg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48230185 gcagacagtgacttggatgctaagagcagtgaggatgatgcagtggaagaaaataaaggg 48230126
Query: 844 aactgcagaagggaaaagggcacagagaccttaaaaaataattcccagcatcacaggaat 903
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 48230125 aactgcagaagggaaaagggcacagagaccttaaaaaataattccaagcatcacaggaat 48230066
Query: 904 catacccactcacgatcatctagtgaagaaagagagcatggtaccaaacactacgcaaaa 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48230065 catacccactcacgatcatctagtgaagaaagagagcatggtaccaaacactacgcaaaa 48230006
Query: 964 agtacca 970
|||||||
Sbjct: 48230005 agtacca 48229999
Score = 216 bits (109), Expect = 2e-53
Identities = 112/113 (99%)
Strand = Plus / Minus
Query: 555 agcccgtttggatgtaacgaagcagagagatctcagtggattttataggcacttattaaa 614
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 48232949 agcccgtttggatgtaacaaagcagagagatctcagtggattttataggcacttattaaa 48232890
Query: 615 tcaagcagttggtgaagaggaagtacctacatgcagctttcgtgaagccaggt 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48232889 tcaagcagttggtgaagaggaagtacctacatgcagctttcgtgaagccaggt 48232837
Score = 212 bits (107), Expect = 3e-52
Identities = 123/131 (93%)
Strand = Plus / Minus
Query: 218 agaccaaactggaaatccagaaggctcttgcagaagattctactgtatatgaatatgaca 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48235892 agaccaaactggaaatccagaaggctcttgcagaagattctactgtatatgaatatgaca 48235833
Query: 278 gtatttatgatgaaatgcagnnnnnnnnggaagaaagtaatcccagattgcttttaggaa 337
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 48235832 gtatttatgatgaaatgcagaaaaaaaaggaagaaagtaatcccagattgcttttaggaa 48235773
Query: 338 aagaccgaaag 348
|||||||||||
Sbjct: 48235772 aagaccgaaag 48235762
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 458 ttgatgataaagaggcatttgtaacatctgcttataagaaaaaactgcaagagagagctg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48234291 ttgatgataaagaggcatttgtaacatctgcttataagaaaaaactgcaagagagagctg 48234232
Query: 518 aagaggaggaaagagaaaggagggctgctgcactcgaag 556
|||||||||||||||||||||||||||||||||||||||
Sbjct: 48234231 aagaggaggaaagagaaaggagggctgctgcactcgaag 48234193
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 69 gtatgggcttattttgccaaagaaagcacagcagttgcaccctgttttgcaaaaaccttc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48286116 gtatgggcttattttgccaaagaaagcacagcagttgcaccctgttttgcaaaaaccttc 48286057
Query: 129 agtgtttgggaatgattctgatgatgatgatgag 162
||||||||||||||||||||||||||||||||||
Sbjct: 48286056 agtgtttgggaatgattctgatgatgatgatgag 48286023
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 7 gtcacgtcggcgtcggccacgttcagcggagacgggagcaagatggcgattccgggcagg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48287382 gtcacgtcggcgtcggccacgttcagcggagacgggagcaagatggcgattccgggcagg 48287323
Query: 67 cagt 70
||||
Sbjct: 48287322 cagt 48287319
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 161 agacctccgtgagtgaaagccttcagagggaagctgctaagaagcaagcaatgaaacag 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48239364 agacctccgtgagtgaaagccttcagagggaagctgctaagaagcaagcaatgaaacag 48239306
Score = 81.8 bits (41), Expect = 6e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 347 agcccaagtatattcacaacttactaaaagcagttgagatc 387
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 48234402 agcccaagtatattcacaacttactaaaagcagttgagatc 48234362
Score = 61.9 bits (31), Expect = 6e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 618 agcagttggtgaagaggaagtacctacatgc 648
|||||||||||||||||||||||||||||||
Sbjct: 48232520 agcagttggtgaagaggaagtacctacatgc 48232490
>Sscrofa_Chr13
|| Length = 218635234
Score = 79.8 bits (40), Expect = 3e-12
Identities = 102/122 (83%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 41 ggagcaagatggcgattccgggcaggcagtatgggcttattttgccaaagaaagcacagc 100
|||||||||||| ||||| ||||| | ||||||| || |||||| |||||||||||
Sbjct: 156311147 ggagcaagatggtgattctgggcacacggtatgggtttgttttgc---agaaagcacaga 156311203
Query: 101 agttgcaccctgttttgcaaaaaccttcagtgtttgggaatgattctgatgatgatgatg 160
| ||||||||||||||||||||||| |||| |||||| |||| |||||| ||| ||||
Sbjct: 156311204 aattgcaccctgttttgcaaaaaccaccagtatttggggctgatcctgatggtgaggatg 156311263
Query: 161 ag 162
||
Sbjct: 156311264 ag 156311265
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,103,823
Number of extensions: 346
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 11
Length of query: 970
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 949
Effective length of database: 2,808,413,156
Effective search space: 2665184085044
Effective search space used: 2665184085044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)