BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013587
         (1192 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_548125.2| PREDICTED: similar to keratin 23 isoform a [Can...   535   e-152
Alignment   gi|XP_548106.2| PREDICTED: similar to keratin 13 isoform a isof...   274   1e-73
Alignment   gi|XP_548101.2| PREDICTED: similar to Keratin, type I cytoskele...   274   1e-73
Alignment   gi|XP_862399.1| PREDICTED: similar to keratin 13 isoform a isof...   273   2e-73
Alignment   gi|XP_862372.1| PREDICTED: similar to keratin 13 isoform a isof...   273   2e-73
Alignment   gi|XP_862344.1| PREDICTED: similar to keratin 13 isoform a isof...   273   2e-73
Alignment   gi|XP_850765.1| PREDICTED: similar to keratin 13 isoform a isof...   273   2e-73
Alignment   gi|XP_548100.1| PREDICTED: similar to type I keratin KA17 isofo...   271   1e-72
Alignment   gi|XP_548099.2| PREDICTED: similar to keratin 17n [Canis famili...   270   2e-72
Alignment   gi|NP_001075890.1| keratin 12 [Canis lupus familiaris].              257   1e-68

>ref|XP_548125.2| PREDICTED: similar to keratin 23 isoform a [Canis familiaris].
          Length = 422

 Score =  535 bits (1379), Expect = e-152
 Identities = 279/377 (74%), Positives = 300/377 (79%)
 Frame = +1

Query: 61   MSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXX 240
            M+S + FSQT SGSL G  G WG  GSFP APSVHGGAGGV                   
Sbjct: 1    MNSSHKFSQTPSGSLRGTGGSWGQLGSFPRAPSVHGGAGGVRISLSFSSPRCLPPGGPWG 60

Query: 241  XXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDY 420
                         KE M+NLNDRLASYLDKVRALEEAN KLES ILKWHEQRDPGSKQ+Y
Sbjct: 61   SRKGNSLPGASG-KEVMQNLNDRLASYLDKVRALEEANEKLESRILKWHEQRDPGSKQNY 119

Query: 421  SQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLR 600
            SQYEE+IS LQEQI DGK+TNAQIILLIDNARMAVDDFSLKYENEHS KKDLEIEVEGLR
Sbjct: 120  SQYEENISHLQEQIMDGKLTNAQIILLIDNARMAVDDFSLKYENEHSFKKDLEIEVEGLR 179

Query: 601  KNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIK 780
            K LDDLTI+TTDLEQEVEGMRKELILMKK HEQ M+EHHMPNDFKVNVKV+  PGEDLIK
Sbjct: 180  KTLDDLTIVTTDLEQEVEGMRKELILMKKRHEQEMKEHHMPNDFKVNVKVNTIPGEDLIK 239

Query: 781  VLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEI 960
            VLEDMRQEYE +IKKKHQD D WYK              T QS QSDIHELKRTFQALEI
Sbjct: 240  VLEDMRQEYEFIIKKKHQDLDTWYKEQAAAMAQEVASPATVQSSQSDIHELKRTFQALEI 299

Query: 961  DLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLX 1140
            DL+ Q N+KSALENMLSETQSRYSCQLQDMQ+IISH+E++L +LRHDLERQ+NE +VLL 
Sbjct: 300  DLQAQRNRKSALENMLSETQSRYSCQLQDMQQIISHYEDELRQLRHDLERQHNEYKVLLG 359

Query: 1141 IKSHLEKEIATYRQLLE 1191
            IK+HLEKEIATY+QLLE
Sbjct: 360  IKTHLEKEIATYQQLLE 376


>ref|XP_548106.2| PREDICTED: similar to keratin 13 isoform a isoform 1 [Canis
            familiaris].
          Length = 407

 Score =  274 bits (701), Expect = 1e-73
 Identities = 153/363 (42%), Positives = 224/363 (61%), Gaps = 2/363 (0%)
 Frame = +1

Query: 109  GAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKET 288
            G+AGG+G   S  +      G GG                                 K T
Sbjct: 40   GSAGGYGGGMSCGFGGGAGSGFGGGFGGGFGGGFGGGFGGGFGDYGGGDGGLLSGNEKIT 99

Query: 289  MRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQEQIA 465
            M+NLNDRLASYLDKVRALEEAN +LE  I  WH ++ P S ++DYS Y ++I  L+++I 
Sbjct: 100  MQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEELRDKIL 159

Query: 466  DGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDLEQ 645
               + N ++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TDLE 
Sbjct: 160  AATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSKTDLEM 219

Query: 646  EVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLIKK 825
            ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE + +K
Sbjct: 220  QIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYEAMAEK 279

Query: 826  KHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSALEN 1002
              +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ LE+
Sbjct: 280  NRRDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLES 339

Query: 1003 MLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATYRQ 1182
             L++T+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIATYR 
Sbjct: 340  TLADTECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIATYRS 399

Query: 1183 LLE 1191
            LLE
Sbjct: 400  LLE 402


>ref|XP_548101.2| PREDICTED: similar to Keratin, type I cytoskeletal 16 (Cytokeratin
            16) (K16) (CK 16) [Canis familiaris].
          Length = 477

 Score =  274 bits (701), Expect = 1e-73
 Identities = 159/390 (40%), Positives = 232/390 (59%), Gaps = 6/390 (1%)
 Frame = +1

Query: 40   APDTDGTMSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGG-----AGGVXXXXXXX 204
            AP   G +S   S S+  SG   G  GG+G  G F  + S  GG      GG        
Sbjct: 38   APSAYGGLS--VSTSRYSSGGACGLGGGYG--GGFSSSSSFGGGLGSGFGGGYGGGLGAG 93

Query: 205  XXXXXXXXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKW 384
                                     K TM+NLNDRLASYLDKVRALEEAN +LE  I  W
Sbjct: 94   FGAGFGAGFGAGFGGGDGGLLSGNEKLTMQNLNDRLASYLDKVRALEEANTELEVKIRDW 153

Query: 385  HEQRDPGSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSL 564
            ++++ P   +DYS Y ++I  L+ +I    + NAQ IL IDNAR+A DDF  KYE+E +L
Sbjct: 154  YQRQRPSEAKDYSPYFKTIEDLRNKIITATIENAQPILQIDNARLAADDFRTKYEHELTL 213

Query: 565  KKDLEIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNV 744
            ++ +E ++ GLR+ LD+LT+  TDLE ++EG+++EL  ++K+HE+ M          V+V
Sbjct: 214  RQSVEADINGLRRVLDELTLSRTDLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVSV 273

Query: 745  KVDATPGEDLIKVLEDMRQEYELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSD 921
            ++DA PG DL ++L +MR +YE + +K  +D + W+                  QSG+S+
Sbjct: 274  EMDAAPGVDLSRILNEMRDQYEQMAEKNRRDAEAWFLSKTEELNKEVVSNSELLQSGRSE 333

Query: 922  IHELKRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHD 1101
            + EL+RT Q LEI+L++Q + K++LE+ L ET+ RY  QL  +Q +I + EE+L +LR +
Sbjct: 334  VTELRRTLQGLEIELQSQLSMKASLESSLEETKGRYCMQLSQIQGLIGNVEEQLAQLRCE 393

Query: 1102 LERQNNEIQVLLXIKSHLEKEIATYRQLLE 1191
            +E+Q+ E QVLL +K+ LE+EIATYR+LLE
Sbjct: 394  MEQQSQEYQVLLDVKTRLEQEIATYRRLLE 423


>ref|XP_862399.1| PREDICTED: similar to keratin 13 isoform a isoform 7 [Canis
            familiaris].
          Length = 807

 Score =  273 bits (699), Expect = 2e-73
 Identities = 144/306 (47%), Positives = 212/306 (69%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYLDKVRALEEAN +LE  I  WH ++ P S ++DYS Y ++I  L++
Sbjct: 497  KITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEELRD 556

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N ++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 557  KILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSKTD 616

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 617  LEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYEAM 676

Query: 817  IKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 677  AEKNRRDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAG 736

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LE+ L++T+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 737  LESTLADTECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 796

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 797  YRSLLE 802



 Score =  269 bits (688), Expect = 3e-72
 Identities = 141/306 (46%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYLDKV ALEEAN  LE  I  W++++ P S ++DYS Y ++I  L++
Sbjct: 104  KITMQNLNDRLASYLDKVHALEEANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEELRD 163

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N+++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+   D
Sbjct: 164  KILAATIDNSRVILEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAKAD 223

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++EG+ +EL  +KK+HE+ M+E       +VNV++DA PG DL +VL +MR++YE +
Sbjct: 224  LEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAM 283

Query: 817  IKKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W +                 Q+ +++I +L+RT Q LEI+L++Q + K+ 
Sbjct: 284  AEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAG 343

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LE+ L+ET+ RY+ QLQ +Q +IS  E +L  LR ++E QN E + LL IK+ LE+EIAT
Sbjct: 344  LESSLAETECRYATQLQQIQGLISSLEAQLSELRSEMECQNQEYKTLLDIKTRLEQEIAT 403

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 404  YRSLLE 409


>ref|XP_862372.1| PREDICTED: similar to keratin 13 isoform a isoform 6 [Canis
            familiaris].
          Length = 811

 Score =  273 bits (699), Expect = 2e-73
 Identities = 144/306 (47%), Positives = 212/306 (69%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYLDKVRALEEAN +LE  I  WH ++ P S ++DYS Y ++I  L++
Sbjct: 501  KITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEELRD 560

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N ++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 561  KILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSKTD 620

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 621  LEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYEAM 680

Query: 817  IKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 681  AEKNRRDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAG 740

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LE+ L++T+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 741  LESTLADTECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 800

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 801  YRSLLE 806



 Score =  269 bits (688), Expect = 3e-72
 Identities = 141/306 (46%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYLDKV ALEEAN  LE  I  W++++ P S ++DYS Y ++I  L++
Sbjct: 108  KITMQNLNDRLASYLDKVHALEEANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEELRD 167

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N+++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+   D
Sbjct: 168  KILAATIDNSRVILEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAKAD 227

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++EG+ +EL  +KK+HE+ M+E       +VNV++DA PG DL +VL +MR++YE +
Sbjct: 228  LEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAM 287

Query: 817  IKKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W +                 Q+ +++I +L+RT Q LEI+L++Q + K+ 
Sbjct: 288  AEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAG 347

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LE+ L+ET+ RY+ QLQ +Q +IS  E +L  LR ++E QN E + LL IK+ LE+EIAT
Sbjct: 348  LESSLAETECRYATQLQQIQGLISSLEAQLSELRSEMECQNQEYKTLLDIKTRLEQEIAT 407

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 408  YRSLLE 413


>ref|XP_862344.1| PREDICTED: similar to keratin 13 isoform a isoform 5 [Canis
            familiaris].
          Length = 692

 Score =  273 bits (699), Expect = 2e-73
 Identities = 144/306 (47%), Positives = 212/306 (69%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYLDKVRALEEAN +LE  I  WH ++ P S ++DYS Y ++I  L++
Sbjct: 382  KITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEELRD 441

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N ++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 442  KILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSKTD 501

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 502  LEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYEAM 561

Query: 817  IKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 562  AEKNRRDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAG 621

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LE+ L++T+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 622  LESTLADTECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 681

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 682  YRSLLE 687



 Score =  233 bits (593), Expect = 4e-61
 Identities = 122/288 (42%), Positives = 190/288 (65%), Gaps = 2/288 (0%)
 Frame = +1

Query: 334  RALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQEQIADGKMTNAQIILLIDN 510
            R    AN  LE  I  W++++ P S ++DYS Y ++I  L+++I    + N+++IL IDN
Sbjct: 7    RTSTTANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEELRDKILAATIDNSRVILEIDN 66

Query: 511  ARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKH 690
            AR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+   DLE ++EG+ +EL  +KK+
Sbjct: 67   ARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAKADLEMQIEGLNEELAYLKKN 126

Query: 691  HEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLIKKKHQDFDVW-YKXXXX 867
            HE+ M+E       +VNV++DA PG DL +VL +MR++YE + +K  +D + W +     
Sbjct: 127  HEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAMAEKNRRDAEAWFFSKTEE 186

Query: 868  XXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQD 1047
                        Q+ +++I +L+RT Q LEI+L++Q + K+ LE+ L+ET+ RY+ QLQ 
Sbjct: 187  LNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAGLESSLAETECRYATQLQQ 246

Query: 1048 MQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATYRQLLE 1191
            +Q +IS  E +L  LR ++E QN E + LL IK+ LE+EIATYR LLE
Sbjct: 247  IQGLISSLEAQLSELRSEMECQNQEYKTLLDIKTRLEQEIATYRSLLE 294


>ref|XP_850765.1| PREDICTED: similar to keratin 13 isoform a isoform 2 [Canis
            familiaris].
          Length = 404

 Score =  273 bits (699), Expect = 2e-73
 Identities = 144/306 (47%), Positives = 212/306 (69%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYLDKVRALEEAN +LE  I  WH ++ P S ++DYS Y ++I  L++
Sbjct: 65   KITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEELRD 124

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N ++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 125  KILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSKTD 184

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 185  LEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYEAM 244

Query: 817  IKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 245  AEKNRRDAEEWFHSKVPQLNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAG 304

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LE+ L++T+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 305  LESTLADTECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 364

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 365  YRSLLE 370


>ref|XP_548100.1| PREDICTED: similar to type I keratin KA17 isoform 1 [Canis
            familiaris].
          Length = 433

 Score =  271 bits (692), Expect = 1e-72
 Identities = 138/305 (45%), Positives = 207/305 (67%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            K TM+NLNDRLASYLDKVRALEEAN +LE  I  W++++ PG  +DYS Y ++I  L+ +
Sbjct: 85   KATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSHYYQTIEDLKNK 144

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I    + NA I+L IDNAR+A DDF  K+E E +L+  +E +  GLR+ LD+LT+   DL
Sbjct: 145  ILTATVDNANILLQIDNARLAADDFRTKFETEQALRVSVEADTNGLRRVLDELTLSRADL 204

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E ++E +++EL  ++K+HE+ M         ++NV++DA PG DL ++L +MR +YE + 
Sbjct: 205  EMQIENLKEELAYLRKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKMA 264

Query: 820  KKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +K  +D + W +                 QSG+S+I EL+RT QALEI+L++Q + K++L
Sbjct: 265  EKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTVQALEIELQSQLSMKASL 324

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            E  L+ET++RY  QL  +Q +I   EE+L +LR ++E+QN E ++LL +K+ LE+EIATY
Sbjct: 325  EGSLAETENRYCVQLSQIQGLIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 384

Query: 1177 RQLLE 1191
            R+LLE
Sbjct: 385  RRLLE 389


>ref|XP_548099.2| PREDICTED: similar to keratin 17n [Canis familiaris].
          Length = 469

 Score =  270 bits (690), Expect = 2e-72
 Identities = 140/305 (45%), Positives = 205/305 (67%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            KETM+NLNDRLASYLDKVRALEEAN  LE  I  W++++ PG  +DYS + ++I  L+ +
Sbjct: 112  KETMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQGPGPARDYSHFFKTIEELRNK 171

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I    + NA ++L IDNAR+A DDF  KYE E +L+  +E +  GLR+ LD+LT+   DL
Sbjct: 172  ILAATIDNASLVLQIDNARLAADDFRTKYETELNLRMSVEADTNGLRRVLDELTLARADL 231

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E ++E +++EL  +KK+HE+ M          V+V++DA PG DL ++L +MR +YE + 
Sbjct: 232  EMQIESLKEELAYLKKNHEEEMNALRGQVGGDVSVEMDAAPGVDLSRILNEMRDQYEKMA 291

Query: 820  KKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +K  +D + W +                 QS +++I EL+R+ Q LEI+L++Q + K++L
Sbjct: 292  EKNRKDAEDWFFSKTEELNREVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKASL 351

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            E  L+ET++RY  QL  +Q +IS  E++LG LR D+ERQN E QVLL +K+ LE+EIATY
Sbjct: 352  EGSLAETEARYGAQLAQLQGLISSIEQQLGELRCDMERQNQEYQVLLDVKTRLEQEIATY 411

Query: 1177 RQLLE 1191
            R+LLE
Sbjct: 412  RRLLE 416


>ref|NP_001075890.1| keratin 12 [Canis lupus familiaris].
          Length = 507

 Score =  257 bits (657), Expect = 1e-68
 Identities = 149/383 (38%), Positives = 219/383 (57%), Gaps = 8/383 (2%)
 Frame = +1

Query: 67   SGYSFSQTLSGSLHGAAGGWGWP--GSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXX 240
            SG SF+  L  +  GA GG      G F       GG GG                    
Sbjct: 67   SGISFAGGLGAAYGGALGGGSGALGGGFGALGGGFGGLGGGFGGLGIGFGGSPGGGSAGI 126

Query: 241  XXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQR-----DPG 405
                         KETM+NLNDRLASYLDKVRALEEAN +LE+ I +W+E R     DPG
Sbjct: 127  LSGNDGGLLSGSEKETMQNLNDRLASYLDKVRALEEANTELENKIREWYETRGSGTGDPG 186

Query: 406  SKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIE 585
            S+ DYS+Y   I  L+ +I    + NAQ+IL IDNAR+A +DF +KYENE +L + +E +
Sbjct: 187  SQSDYSKYYPLIEDLRNEIISASIGNAQLILQIDNARLAAEDFRMKYENELALHQSVEAD 246

Query: 586  VEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPG 765
            + GLR+ LD+LT+   DLE ++E + +EL  +KK+HE+ ++        +++V++DA P 
Sbjct: 247  INGLRRVLDELTLARADLEMQIENLTEELAYLKKNHEEELQSFRAGGPGEISVEMDAAPA 306

Query: 766  EDLIKVLEDMRQEYELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRT 942
             DL ++L +MR +YE + ++  +D + W+ +                QS +S++ +L+R 
Sbjct: 307  VDLTRLLNNMRAQYEAIAEQNRKDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRA 366

Query: 943  FQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNE 1122
             Q LEI+L++Q   K +LE  L+E +  Y  QL  +Q++I   EE+L ++R D ERQN +
Sbjct: 367  LQNLEIELQSQLATKKSLEASLAEVEGDYCGQLSQVQQLIGSLEEQLLQVRADTERQNAD 426

Query: 1123 IQVLLXIKSHLEKEIATYRQLLE 1191
             Q LL  K+ LE EI TYR+LL+
Sbjct: 427  HQRLLNAKARLEMEIETYRRLLD 449


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.312    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,550,197
Number of extensions: 1249524
Number of successful extensions: 7438
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 6892
Number of HSP's successfully gapped: 155
Length of query: 397
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 292
Effective length of database: 15,374,224
Effective search space: 4489273408
Effective search space used: 4489273408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013587
         (1192 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001095405.1| keratin, type I cytoskeletal 23 [Bos taurus].     531   e-151
Alignment   gi|NP_001015600.1| keratin, type I cytoskeletal 19 [Bos taurus].     279   4e-75
Alignment   gi|NP_001160047.1| keratin, type I cytoskeletal 14 [Bos taurus].     273   3e-73
Alignment   gi|XP_002696036.1| PREDICTED: keratin 13-like [Bos taurus].          271   6e-73
Alignment   gi|XP_002702249.1| PREDICTED: keratin 13-like [Bos taurus].          271   6e-73
Alignment   gi|NP_001098792.1| keratin, type I cytoskeletal 17 [Bos taurus].     271   8e-73
Alignment   gi|NP_001124219.1| keratin, type I cytoskeletal 13 [Bos taurus].     269   4e-72
Alignment   gi|XP_002696056.1| PREDICTED: keratin 12-like [Bos taurus].          261   1e-69
Alignment   gi|XP_001255462.1| PREDICTED: keratin 12-like [Bos taurus].          261   1e-69
Alignment   gi|NP_776802.1| keratin, type I cytoskeletal 10 [Bos taurus].        259   3e-69

>ref|NP_001095405.1| keratin, type I cytoskeletal 23 [Bos taurus].
          Length = 415

 Score =  531 bits (1369), Expect = e-151
 Identities = 277/377 (73%), Positives = 299/377 (79%)
 Frame = +1

Query: 61   MSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXX 240
            M+S  SFSQ  SGSL+   G WG PGSF  APSVHGGAGGV                   
Sbjct: 1    MNSNQSFSQKRSGSLYATGGSWGRPGSFLRAPSVHGGAGGVRISLSFSSPSCPLPEGSWR 60

Query: 241  XXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDY 420
                         KE M+NLNDRLA+YL+KVRALEEANVKLESCILKWH+QRD G+KQDY
Sbjct: 61   SGRGSSLLGGNE-KEMMQNLNDRLATYLEKVRALEEANVKLESCILKWHQQRDSGNKQDY 119

Query: 421  SQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLR 600
            SQYEESIS LQEQIADGK+ NAQIILLIDNARMAVDDFSLKYENEHS KKDLEIEVEGLR
Sbjct: 120  SQYEESISHLQEQIADGKVNNAQIILLIDNARMAVDDFSLKYENEHSFKKDLEIEVEGLR 179

Query: 601  KNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIK 780
            K LDDLTI+TTDLEQEVEGMRKELILMKK HEQ +EEH +PNDFKVNVKV+ TPGEDLIK
Sbjct: 180  KTLDDLTIVTTDLEQEVEGMRKELILMKKRHEQEVEEHRVPNDFKVNVKVETTPGEDLIK 239

Query: 781  VLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEI 960
            VLEDMRQEYE +IKKKHQD D WYK                QS QSD+HELKRTFQALEI
Sbjct: 240  VLEDMRQEYEFIIKKKHQDLDTWYKQQSAAVAQEAASPTGVQSSQSDLHELKRTFQALEI 299

Query: 961  DLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLX 1140
            DL+ Q +KKSALENMLSETQSRYSCQLQDMQ+IISH+EE+L +LRHDLERQNNE +VLL 
Sbjct: 300  DLQAQCSKKSALENMLSETQSRYSCQLQDMQQIISHYEEELTQLRHDLERQNNEYKVLLG 359

Query: 1141 IKSHLEKEIATYRQLLE 1191
            IK+HLEKEIATYRQLLE
Sbjct: 360  IKTHLEKEIATYRQLLE 376


>ref|NP_001015600.1| keratin, type I cytoskeletal 19 [Bos taurus].
          Length = 399

 Score =  279 bits (713), Expect = 4e-75
 Identities = 158/384 (41%), Positives = 232/384 (60%), Gaps = 9/384 (2%)
 Frame = +1

Query: 67   SGYSFSQTLSGSLHGAAGG----WGWPGSFPWAPSVHGGAGG----VXXXXXXXXXXXXX 222
            + YS+ Q+ S S  G  GG    +G  G+F  APS+HGG+GG    V             
Sbjct: 2    TSYSYRQSSSTSSFGGMGGGSMRFGAGGAFR-APSIHGGSGGRGVSVSSARFVSSSSGGY 60

Query: 223  XXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDP 402
                               K TM+NLNDRLASYL+KVRALEEAN  LE  I  W++++ P
Sbjct: 61   GGGYGGALATSDGLLAGNEKLTMQNLNDRLASYLEKVRALEEANGDLEVKIRDWYQKQGP 120

Query: 403  GSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEI 582
            G  +DYS Y ++I  L++QI    + N++I+L IDNAR+A DDF  K+E E +L+  +E 
Sbjct: 121  GPARDYSHYFKTIEDLRDQILGATIENSKIVLQIDNARLAADDFRTKFETEQALRMSVEA 180

Query: 583  EVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATP 762
            ++ GLR+ LD+LT+  TDLE ++EG+++EL  +KK+HE+ M         +V+V+VD+ P
Sbjct: 181  DINGLRRVLDELTLARTDLEMQIEGLKEELAYLKKNHEEEMSVLKGQVGGQVSVEVDSAP 240

Query: 763  GEDLIKVLEDMRQEYELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKR 939
            G DL K+L DMR +YE++ +K  +D + W+                  Q  ++++ +L+R
Sbjct: 241  GIDLAKILSDMRSQYEVIAEKNRKDAEAWFISQTEELNREVAGHTEQLQISKTEVTDLRR 300

Query: 940  TFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNN 1119
            T Q LEI+L++Q + K+ALE  L+ET++R+  QL  +Q +IS  E +L  +R D ERQN 
Sbjct: 301  TLQGLEIELQSQLSMKAALEGTLAETEARFGAQLAQIQALISGIEAQLSDVRADTERQNQ 360

Query: 1120 EIQVLLXIKSHLEKEIATYRQLLE 1191
            E Q L+ IK+ LE+EIATYR LLE
Sbjct: 361  EYQHLMDIKTRLEQEIATYRNLLE 384


>ref|NP_001160047.1| keratin, type I cytoskeletal 14 [Bos taurus].
          Length = 477

 Score =  273 bits (697), Expect = 3e-73
 Identities = 154/381 (40%), Positives = 224/381 (58%), Gaps = 2/381 (0%)
 Frame = +1

Query: 55   GTMSSGYSFSQTLSGSL-HGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXX 231
            G    G+S S +  G+L  G  GG+G      +     GG GG                 
Sbjct: 62   GGYGGGFSSSSSFGGALGSGFGGGYGGGLGAGFGGGFGGGVGG----------------G 105

Query: 232  XXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSK 411
                            K TM+NLNDRLASYLDKVRALEEAN  LE  I  W++++ P   
Sbjct: 106  FGGGFGVGDGLLAGSEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPAEI 165

Query: 412  QDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVE 591
            +DYS Y ++I  L+ +I    + NA ++L IDNAR+A DDF  KYE E +L+  +E ++ 
Sbjct: 166  KDYSPYFKTIEDLRNKILTATVDNANVVLQIDNARLAADDFRTKYETELNLRLSVEADIN 225

Query: 592  GLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGED 771
            GLR+ LD+LT+   DLE ++E +++EL  ++K+HE+ M          VNV++DA PG D
Sbjct: 226  GLRRVLDELTLARADLEMQIESLKEELAYLRKNHEEEMNSLRGQVGGDVNVEMDAAPGVD 285

Query: 772  LIKVLEDMRQEYELLIKKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQ 948
            L ++L +MR +YE + +K  +D + W +                 QSG+S+I EL+RT Q
Sbjct: 286  LSRILNEMRDQYEKMAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTLQ 345

Query: 949  ALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQ 1128
             LEI+L++Q + K++LEN L ET+ RY  QL  +QE+IS  EE+L +LR ++E+QN E +
Sbjct: 346  NLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQELISSVEEQLAQLRCEMEQQNQEYK 405

Query: 1129 VLLXIKSHLEKEIATYRQLLE 1191
            +LL +K+ LE+EIATYR+LLE
Sbjct: 406  ILLDVKTRLEQEIATYRRLLE 426


>ref|XP_002696036.1| PREDICTED: keratin 13-like [Bos taurus].
          Length = 434

 Score =  271 bits (694), Expect = 6e-73
 Identities = 145/306 (47%), Positives = 211/306 (68%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYL+KVRALEEAN  LE  I  WH ++ P S ++DYS Y ++I  L++
Sbjct: 101  KITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQTPTSPERDYSPYFKTIDELRD 160

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N +IIL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 161  KILAATIDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTKTD 220

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 221  LEMQIESLNEELAYLKKNHEEEMKEFSKQMVGQVNVEMDATPGIDLTRVLAEMREQYEAM 280

Query: 817  IKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 281  AEKNRRDAEEWFHSKSAELNKEVTSSTALIQTSKTEITELRRTLQGLEIELQSQLSMKAG 340

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LE+ L+ET+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 341  LESTLAETECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 400

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 401  YRSLLE 406


>ref|XP_002702249.1| PREDICTED: keratin 13-like [Bos taurus].
          Length = 434

 Score =  271 bits (694), Expect = 6e-73
 Identities = 145/306 (47%), Positives = 211/306 (68%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYL+KVRALEEAN  LE  I  WH ++ P S ++DYS Y ++I  L++
Sbjct: 101  KITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQTPTSPERDYSPYFKTIDELRD 160

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N +IIL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 161  KILAATIDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTKTD 220

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 221  LEMQIESLNEELAYLKKNHEEEMKEFSKQMVGQVNVEMDATPGIDLTRVLAEMREQYEAM 280

Query: 817  IKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 281  AEKNRRDAEEWFHSKSAELNKEVTSSTALIQTSKTEITELRRTLQGLEIELQSQLSMKAG 340

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LE+ L+ET+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 341  LESTLAETECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 400

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 401  YRSLLE 406


>ref|NP_001098792.1| keratin, type I cytoskeletal 17 [Bos taurus].
          Length = 441

 Score =  271 bits (693), Expect = 8e-73
 Identities = 157/398 (39%), Positives = 234/398 (58%), Gaps = 1/398 (0%)
 Frame = +1

Query: 1    SFAVSGSGPEPSPAPDTDGTMSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGG 180
            S  VSGS    S    + G + SG      L GS + +   +G  GS+     V GG GG
Sbjct: 26   SCRVSGSLGGGSCRLGSAGGLGSG------LGGSSYSSCYSFGSGGSYGSGGYVSGGYGG 79

Query: 181  VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVK 360
                                             K TM+NLNDRLASYLDKVRALEEAN +
Sbjct: 80   --------------------GFGGVDGLLVGGEKATMQNLNDRLASYLDKVRALEEANTE 119

Query: 361  LESCILKWHEQRDPGSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSL 540
            LE  I  W++++ PG   DYS Y ++I  L+ +I    + NA ++L IDNAR+A DDF  
Sbjct: 120  LELKIRDWYQKQAPGPAPDYSSYFKTIEDLRNKIHTATVDNANLLLQIDNARLAADDFRT 179

Query: 541  KYENEHSLKKDLEIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHM 720
            K+E E +L+  +E ++ GLR+ LD+LT+   DLE ++E +++EL  ++K+HE+ M+    
Sbjct: 180  KFETEQALRVSVEADINGLRRVLDELTLARADLEMQIENLKEELAYLRKNHEEEMKALRG 239

Query: 721  PNDFKVNVKVDATPGEDLIKVLEDMRQEYELLIKKKHQDFDVW-YKXXXXXXXXXXXXXX 897
                ++NV++DA PG DL ++L +MR +YE + +K  +D + W +               
Sbjct: 240  QVGGEINVEMDAAPGVDLSRILNEMRDQYEKMAEKNRKDAEDWFFSKTEELNREVATNSE 299

Query: 898  TGQSGQSDIHELKRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEE 1077
              QSG+S+I EL+RT QALEI+L++Q + K++LE  L+ET++RY  QL  +Q +I   EE
Sbjct: 300  LVQSGKSEISELRRTLQALEIELQSQLSMKASLEGSLAETENRYCMQLSQIQGLIGSVEE 359

Query: 1078 KLGRLRHDLERQNNEIQVLLXIKSHLEKEIATYRQLLE 1191
            +L +LR ++E+QN E ++LL +K+ LE+EIATYR+LLE
Sbjct: 360  QLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLE 397


>ref|NP_001124219.1| keratin, type I cytoskeletal 13 [Bos taurus].
          Length = 453

 Score =  269 bits (687), Expect = 4e-72
 Identities = 151/368 (41%), Positives = 224/368 (60%), Gaps = 2/368 (0%)
 Frame = +1

Query: 94   SGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 273
            SGS  G  GG+G      +     GG GG                               
Sbjct: 54   SGSAGGYGGGFGGGAGSGYGGGFGGGFGG------------GFGSGFGDFGGGDGGLLSG 101

Query: 274  XXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRL 450
              K TM+NLNDRLASYL+KVRALEEAN  LE  I  W++++ P S ++DYS Y ++I  L
Sbjct: 102  NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWYQRQSPTSPERDYSPYFKTIDEL 161

Query: 451  QEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIIT 630
            +++I    + N+Q+IL IDNAR+A DDF LK+ENE +L++ +E ++ GLR+ LD+LT+  
Sbjct: 162  RDKILAAAIKNSQVILEIDNARLAADDFRLKHENEMALRQSVEADINGLRRVLDELTLTK 221

Query: 631  TDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYE 810
            TDLE ++E + +EL  +KK+HE+ M+E       +VNV++DA P  DL +VL +MR++YE
Sbjct: 222  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPAVDLTRVLSEMREQYE 281

Query: 811  LLIKKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKK 987
             + +K  +D + W +                 Q+ +++I +L+RT Q LEI+L++Q + K
Sbjct: 282  AMAEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTIQGLEIELQSQLSMK 341

Query: 988  SALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEI 1167
            + LE+ L+ET+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EI
Sbjct: 342  AGLESTLAETECRYAAQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEI 401

Query: 1168 ATYRQLLE 1191
            ATYR LLE
Sbjct: 402  ATYRSLLE 409


>ref|XP_002696056.1| PREDICTED: keratin 12-like [Bos taurus].
          Length = 532

 Score =  261 bits (666), Expect = 1e-69
 Identities = 138/310 (44%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQR-----DPGSKQDYSQYEESIS 444
            KETM+NLNDRLASYLDKVRALEEAN  LE+ I +W+E R     DPGS+ DYS+Y   I 
Sbjct: 163  KETMKNLNDRLASYLDKVRALEEANTDLETKIREWYETRGSGTGDPGSQNDYSKYYPLIE 222

Query: 445  RLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTI 624
             L+ +I    + NAQ+IL IDNAR+A DDF +KYENE +L +++E ++ GLR+ LD+LT+
Sbjct: 223  DLRNKIISANIENAQLILQIDNARLAADDFRMKYENELALCQNVEADINGLRRVLDELTL 282

Query: 625  ITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQE 804
               DLE ++E + +EL  +KK+HE+ ++        +V+V++DA PG DL ++L DMR +
Sbjct: 283  ARADLETQIETLNEELAYLKKNHEEELQSCRAGGPGQVSVEMDAAPGVDLTRLLNDMRAQ 342

Query: 805  YELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYN 981
            YE + ++  +D + W+ +                QS +S++ +L+R  Q LEI+L++Q  
Sbjct: 343  YETIAEQNRKDAEAWFIEKSGELRKEISSNTEQLQSSKSEVTDLRRALQNLEIELQSQLA 402

Query: 982  KKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEK 1161
             K +LE+ L+ET+  Y  QL  +Q++I   EE+L ++R D ERQ+ + Q LL +K+ LE 
Sbjct: 403  MKKSLEDSLAETEGDYCGQLSQVQQLIGSLEEQLLQVRADAERQSADYQRLLNVKARLEL 462

Query: 1162 EIATYRQLLE 1191
            EI TYR+LL+
Sbjct: 463  EIETYRRLLD 472


>ref|XP_001255462.1| PREDICTED: keratin 12-like [Bos taurus].
          Length = 532

 Score =  261 bits (666), Expect = 1e-69
 Identities = 138/310 (44%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQR-----DPGSKQDYSQYEESIS 444
            KETM+NLNDRLASYLDKVRALEEAN  LE+ I +W+E R     DPGS+ DYS+Y   I 
Sbjct: 163  KETMKNLNDRLASYLDKVRALEEANTDLETKIREWYETRGSGTGDPGSQNDYSKYYPLIE 222

Query: 445  RLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTI 624
             L+ +I    + NAQ+IL IDNAR+A DDF +KYENE +L +++E ++ GLR+ LD+LT+
Sbjct: 223  DLRNKIISANIENAQLILQIDNARLAADDFRMKYENELALCQNVEADINGLRRVLDELTL 282

Query: 625  ITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQE 804
               DLE ++E + +EL  +KK+HE+ ++        +V+V++DA PG DL ++L DMR +
Sbjct: 283  ARADLETQIETLNEELAYLKKNHEEELQSCRAGGPGQVSVEMDAAPGVDLTRLLNDMRAQ 342

Query: 805  YELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYN 981
            YE + ++  +D + W+ +                QS +S++ +L+R  Q LEI+L++Q  
Sbjct: 343  YETIAEQNRKDAEAWFIEKSGELRKEISSNTEQLQSSKSEVTDLRRALQNLEIELQSQLA 402

Query: 982  KKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEK 1161
             K +LE+ L+ET+  Y  QL  +Q++I   EE+L ++R D ERQ+ + Q LL +K+ LE 
Sbjct: 403  MKKSLEDSLAETEGDYCGQLSQVQQLIGSLEEQLLQVRADAERQSADYQRLLNVKARLEL 462

Query: 1162 EIATYRQLLE 1191
            EI TYR+LL+
Sbjct: 463  EIETYRRLLD 472


>ref|NP_776802.1| keratin, type I cytoskeletal 10 [Bos taurus].
          Length = 526

 Score =  259 bits (662), Expect = 3e-69
 Identities = 157/381 (41%), Positives = 219/381 (57%), Gaps = 7/381 (1%)
 Frame = +1

Query: 70   GYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXXXXX 249
            G SF  +  GS  G  GG G+ G      S  GG GG                       
Sbjct: 79   GSSFGGSYGGSFGGGYGGGGFGGGSFGGGSFGGGLGG---------------------GF 117

Query: 250  XXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHE------QRDPGSK 411
                      K TM+NLNDRLASYLDKVRALEE+N +LE  I +W+E      QR+P   
Sbjct: 118  GDGGLISGNQKITMQNLNDRLASYLDKVRALEESNYELEVKIKEWYEKYGNSRQREP--- 174

Query: 412  QDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVE 591
            +DYS+Y ++I  L+ QI +    NA I++ +DNAR+A DDF LKYENE +L++ +E ++ 
Sbjct: 175  RDYSKYYQTIDDLKNQIFNLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADIN 234

Query: 592  GLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGED 771
            GLR+ LD+LT+  TDLE ++E + +EL  +KK+HE+ M +    +   VNV+++A PG D
Sbjct: 235  GLRRVLDELTLTKTDLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVD 294

Query: 772  LIKVLEDMRQEYELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQ 948
            L ++L +MR +YE L +K  +D + W+ +                 S +S+I EL+RT Q
Sbjct: 295  LTELLNNMRSQYEQLAEKNRRDAEAWFNEKSKELTTEINSNLEQVSSHKSEITELRRTIQ 354

Query: 949  ALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQ 1128
             LEI+L++Q   K +LE  L+ET+ RY  QL  +Q  IS  EE+L ++R + E QN E Q
Sbjct: 355  GLEIELQSQLALKQSLEASLAETEGRYCVQLSQIQSQISSLEEQLQQIRAETECQNAEYQ 414

Query: 1129 VLLXIKSHLEKEIATYRQLLE 1191
             LL IK  LE EI TYR LLE
Sbjct: 415  QLLDIKIRLENEIQTYRSLLE 435


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.312    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,443,710
Number of extensions: 1190463
Number of successful extensions: 7121
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 6780
Number of HSP's successfully gapped: 112
Length of query: 397
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 293
Effective length of database: 14,240,222
Effective search space: 4172385046
Effective search space used: 4172385046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013587
         (1192 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003131507.1| PREDICTED: LOW QUALITY PROTEIN: keratin, typ...   637   0.0  
Alignment   gi|XP_003131528.2| PREDICTED: keratin, type I cytoskeletal 40-l...   356   1e-98
Alignment   gi|XP_003131484.1| PREDICTED: keratin, type I cytoskeletal 13-l...   273   2e-73
Alignment   gi|XP_003131486.1| PREDICTED: keratin, type I cytoskeletal 15-l...   270   2e-72
Alignment   gi|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-l...   265   3e-71
Alignment   gi|XP_003131509.1| PREDICTED: keratin, type I cytoskeletal 12 [...   265   4e-71
Alignment   gi|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 iso...   259   3e-69
Alignment   gi|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-lik...   257   1e-68
Alignment   gi|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-l...   249   3e-66
Alignment   gi|XP_003131489.2| PREDICTED: keratin, type I cuticular Ha3-II ...   246   2e-65

>ref|XP_003131507.1| PREDICTED: LOW QUALITY PROTEIN: keratin, type I cytoskeletal 23-like
            [Sus scrofa].
          Length = 416

 Score =  637 bits (1642), Expect = 0.0
 Identities = 326/377 (86%), Positives = 328/377 (87%)
 Frame = +1

Query: 61   MSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXX 240
            MSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGV                   
Sbjct: 1    MSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVRISLSFSSPRSCPPPGGSW 60

Query: 241  XXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDY 420
                         KETMRNLNDRLASYLDKVRALEEANVKLES ILKWHEQRDPGSKQDY
Sbjct: 61   GSGRGSSLLGGNGKETMRNLNDRLASYLDKVRALEEANVKLESXILKWHEQRDPGSKQDY 120

Query: 421  SQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLR 600
            SQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLR
Sbjct: 121  SQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLR 180

Query: 601  KNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIK 780
            KNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIK
Sbjct: 181  KNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIK 240

Query: 781  VLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEI 960
            VLEDMRQEYELLIKKKHQDFDVWYK              TGQSGQSDIHELKRTFQALEI
Sbjct: 241  VLEDMRQEYELLIKKKHQDFDVWYKEQSAAMAQEAASPATGQSGQSDIHELKRTFQALEI 300

Query: 961  DLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLX 1140
            DLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEE+LGRLRHDLERQNNE +VLL 
Sbjct: 301  DLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEELGRLRHDLERQNNEYKVLLG 360

Query: 1141 IKSHLEKEIATYRQLLE 1191
            IKSHLEKEIATYRQLLE
Sbjct: 361  IKSHLEKEIATYRQLLE 377


>ref|XP_003131528.2| PREDICTED: keratin, type I cytoskeletal 40-like [Sus scrofa].
          Length = 464

 Score =  356 bits (914), Expect = 1e-98
 Identities = 191/378 (50%), Positives = 248/378 (65%), Gaps = 1/378 (0%)
 Frame = +1

Query: 61   MSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXX 240
            MSSGYSFSQTLSGSLHGAAGGWGWPGSFP APSVHGGAGGV                   
Sbjct: 1    MSSGYSFSQTLSGSLHGAAGGWGWPGSFPRAPSVHGGAGGVRISLSFSSPRSCPPPGGSW 60

Query: 241  XXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDY 420
                         KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRD GSKQDY
Sbjct: 61   GSGRGSSLLGGNGKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDSGSKQDY 120

Query: 421  SQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLR 600
            SQYEESISRLQEQI   K  N+++ + +DN ++A DDF  KY+ E SL++ +E+++ GLR
Sbjct: 121  SQYEESISRLQEQILCTKAENSRLAVQLDNCKLAADDFRSKYDAELSLRQLVEMDISGLR 180

Query: 601  KNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIK 780
              L +L++  +DLE  VE ++ +L+ +KK+HE+ +         +++V+++  P  DL K
Sbjct: 181  GILGELSLCQSDLEAHVESLKDDLLCLKKNHEEEVNVLREQLGDRLSVELNTAPTVDLNK 240

Query: 781  VLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTGQSG-QSDIHELKRTFQALE 957
            VL++MR +YE ++   H+D + W+                   G Q+++ ELKRT  ALE
Sbjct: 241  VLDEMRGQYETVLANNHRDMEEWFAVQTEELNQQQLSSAEQLQGCQTEMLELKRTATALE 300

Query: 958  IDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLL 1137
            I+L+ Q +   +LE  ++ET+++YS QL  MQ +I   E +L  +R DLERQN E +VLL
Sbjct: 301  IELQAQQSLTESLECTVAETEAQYSSQLAQMQRLIDSVETQLAEIRCDLERQNQEYEVLL 360

Query: 1138 XIKSHLEKEIATYRQLLE 1191
              K+ LE EI TYR LLE
Sbjct: 361  DTKARLECEITTYRGLLE 378


>ref|XP_003131484.1| PREDICTED: keratin, type I cytoskeletal 13-like [Sus scrofa].
          Length = 454

 Score =  273 bits (697), Expect = 2e-73
 Identities = 142/306 (46%), Positives = 212/306 (69%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYL+KVRALEEAN  LE  I  W++++ P S ++DYS Y ++I  L++
Sbjct: 103  KITMQNLNDRLASYLEKVRALEEANTDLEVKIRDWYQKQSPSSPERDYSPYFKTIEELRD 162

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N +++L IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 163  KIQAANIENNRVVLQIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTKTD 222

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 223  LEMQIESLNEELAFLKKNHEEEMKEFSNRVVGQVNVEMDATPGVDLTRVLAEMREQYEAM 282

Query: 817  IKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  ++ + W+ K                Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 283  AEKNRREAEEWFNKKIEELNKEVISSTALIQTSKTEITELRRTLQGLEIELQSQLSTKAG 342

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LEN L+ET+ RY+ QLQ +Q +I   E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 343  LENSLAETECRYALQLQQIQGLIGSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 402

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 403  YRSLLE 408


>ref|XP_003131486.1| PREDICTED: keratin, type I cytoskeletal 15-like [Sus scrofa].
          Length = 460

 Score =  270 bits (689), Expect = 2e-72
 Identities = 155/376 (41%), Positives = 227/376 (60%), Gaps = 2/376 (0%)
 Frame = +1

Query: 70   GYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXXXXX 249
            G  F   L G L G  GG G+ GSF       GG  G                       
Sbjct: 69   GGGFGGGLGGGLGGGFGG-GFAGSFGGGFGDFGGGNG----------------------- 104

Query: 250  XXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQ 426
                      K TM+NLNDRLASYLDKVRALEEAN  LE  I  W++++ P S ++DYS 
Sbjct: 105  ---GLLAGNEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQSPSSPERDYSP 161

Query: 427  YEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKN 606
            Y +++  L+++I    + N+++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ 
Sbjct: 162  YFKTMEELRDKIRAAAIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRV 221

Query: 607  LDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVL 786
            LD+LT+  TDLE ++E + +EL  +KK+HE+ M+E       +VNV++DA PG DL +VL
Sbjct: 222  LDELTLTKTDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPGVDLTRVL 281

Query: 787  EDMRQEYELLIKKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEID 963
             +MR++YE + +K  +D + W +                 Q+ +++I +L+RT Q LEI+
Sbjct: 282  AEMREQYEAIAEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTVQGLEIE 341

Query: 964  LETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXI 1143
            L++Q + K+ LE+ L+ET+ RY+ QLQ +Q +I   E +L  LR ++E QN E ++LL I
Sbjct: 342  LQSQLSMKAGLESSLAETECRYATQLQQIQGLIGGLETQLSELRSEMECQNQEYKMLLDI 401

Query: 1144 KSHLEKEIATYRQLLE 1191
            K+ LE+EIATYR LLE
Sbjct: 402  KTRLEQEIATYRSLLE 417


>ref|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-like [Sus scrofa].
          Length = 404

 Score =  265 bits (678), Expect = 3e-71
 Identities = 151/389 (38%), Positives = 230/389 (59%), Gaps = 14/389 (3%)
 Frame = +1

Query: 67   SGYSFSQTLSGSLHGAAGG----WGWPGSFPWAPSVHGGAGG---------VXXXXXXXX 207
            + YS+ Q+ + S  G  GG    +   G+F  APS+HGG+GG                  
Sbjct: 2    TSYSYRQSSATSSFGGLGGGSVRFSAGGAFR-APSIHGGSGGRGVSVSSARFVSSSSSGG 60

Query: 208  XXXXXXXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWH 387
                                    K TM+NLNDRLASYL+KVRALE+AN  LE  I  W+
Sbjct: 61   YGGGYGGGYAGALAGSDGLLAGNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWY 120

Query: 388  EQRDPGSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLK 567
            +++ PG  +DYS Y ++I  L+++I    + N++I+L IDNAR+A DDF  K+E E +L+
Sbjct: 121  QKQGPGPARDYSHYFKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALR 180

Query: 568  KDLEIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVK 747
              +E ++ GLR+ LD+LT+  TDLE ++EG+++EL  +KK+HE+ +         +V+V+
Sbjct: 181  LSVEADINGLRRVLDELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVE 240

Query: 748  VDATPGEDLIKVLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDI 924
            VD+ PG DL K+L DMR +YE++ ++  +D + W+                  Q  ++++
Sbjct: 241  VDSAPGIDLAKILSDMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEV 300

Query: 925  HELKRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDL 1104
             +L+RT Q LEI+L++Q + K+ALE  L+ET++R+  QL  +Q +IS  E +L  +R D 
Sbjct: 301  TDLRRTLQGLEIELQSQLSMKAALEGTLAETEARFGAQLAQIQALISGIEAQLSDVRADT 360

Query: 1105 ERQNNEIQVLLXIKSHLEKEIATYRQLLE 1191
            ERQN E Q L+ IK+ LE+EIATYR LLE
Sbjct: 361  ERQNQEYQHLMDIKTRLEQEIATYRNLLE 389


>ref|XP_003131509.1| PREDICTED: keratin, type I cytoskeletal 12 [Sus scrofa].
          Length = 494

 Score =  265 bits (677), Expect = 4e-71
 Identities = 153/382 (40%), Positives = 225/382 (58%), Gaps = 7/382 (1%)
 Frame = +1

Query: 67   SGYSFSQTLSGSLHGAAG-GWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXXX 243
            SGY F      S  G  G G+G  G   +  + +GGAGG                     
Sbjct: 59   SGYGFGGGSGSSFAGGLGAGYGGAG---YGGAGYGGAGG---GDFGGLGIGFGGGSPGIL 112

Query: 244  XXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQR-----DPGS 408
                        KETM+NLNDRLASYLDKVRALEEAN  LE+ I +W+E R     DP S
Sbjct: 113  SGNDGGLLSGSEKETMKNLNDRLASYLDKVRALEEANTDLENKIREWYETRGSGTGDPRS 172

Query: 409  KQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEV 588
            + DYS+Y   I  L+ +I    + NAQ+IL IDNAR+A +DF +KYENE +L +++E ++
Sbjct: 173  QSDYSKYFPLIEELKNKIISASIANAQLILQIDNARLAAEDFRMKYENEVALCQNVEADI 232

Query: 589  EGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGE 768
             GLR+ LD+LT++  DLE ++E + +EL  +KK+HE+ ++        +V+V++DA PG 
Sbjct: 233  NGLRRVLDELTLVRADLETQIETLNEELAYLKKNHEEELQSFRAGGPGQVSVEMDAAPGV 292

Query: 769  DLIKVLEDMRQEYELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTF 945
            DL K+L DMR +YE + ++  +D + W+ +                QS +S++ +L+R  
Sbjct: 293  DLTKLLNDMRAQYEAIAEQNRKDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRAL 352

Query: 946  QALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEI 1125
            Q LEI+L++Q   K +LE+ L+ET+  Y  QL  +Q++I   EE+L ++R D ERQN + 
Sbjct: 353  QNLEIELQSQLAMKKSLEDSLAETEGDYCAQLSQVQQLIGGLEEQLLQVRADAERQNADY 412

Query: 1126 QVLLXIKSHLEKEIATYRQLLE 1191
            Q LL +K+ LE EI TYR+LL+
Sbjct: 413  QRLLNVKARLELEIETYRRLLD 434


>ref|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 isoform 2 [Sus scrofa].
          Length = 459

 Score =  259 bits (661), Expect = 3e-69
 Identities = 138/305 (45%), Positives = 201/305 (65%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            KETM+ LNDRLA+YL+KVR LE  N +LES I +W+E + P    DY  Y ++I  LQ++
Sbjct: 94   KETMQFLNDRLANYLEKVRQLERDNAELESRIREWYESQIPYICPDYQAYFKTIEELQQK 153

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I   K  NA+++L IDNA++A DDF  KYE E  +++ +E +  GLR+ LD+LT+   DL
Sbjct: 154  ILITKADNARLVLQIDNAKLAADDFRTKYETELGMRQLVEADTNGLRRILDELTLCKADL 213

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E +VE +++ELI +KK+HE+ +         ++NV+VDA P  DL K+L+DMR +YE L+
Sbjct: 214  EMQVESLKEELICLKKNHEEEVNTLRCQLGDRLNVEVDAAPPVDLNKILDDMRCQYEALV 273

Query: 820  KKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +   +D + W+                  Q  Q++I EL+R   ALEI+L+ Q++ +++L
Sbjct: 274  ENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRNVNALEIELQAQHSMRNSL 333

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            E  L+ET++RYS QL  MQ +IS+ E +L  +R DLERQN E QVLL +K+ LE EIATY
Sbjct: 334  EATLAETEARYSSQLAQMQGLISNVEAQLAEIRCDLERQNQEYQVLLDVKARLESEIATY 393

Query: 1177 RQLLE 1191
            R+LLE
Sbjct: 394  RRLLE 398


>ref|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-like [Sus scrofa].
          Length = 493

 Score =  257 bits (656), Expect = 1e-68
 Identities = 137/305 (44%), Positives = 201/305 (65%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            KETM++LNDRLASYL+KVR LE  N +LE  I +W EQ++P    DY  Y ++I  LQ++
Sbjct: 136  KETMQSLNDRLASYLEKVRRLERENSELEGRIREWCEQQEPYLCPDYQSYFQTIEELQKK 195

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
                K  NA++++ IDNA++A DDF  KYE E S+++ +E ++ GLR+ LDDLT+   DL
Sbjct: 196  TLCTKAENARLVVQIDNAKLAADDFRSKYETEVSMRQLVESDMNGLRRILDDLTLCKADL 255

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E +VE +++EL+ +KK+HE+ +         ++NV+VDA P  DL +VL++MR +YE L+
Sbjct: 256  EAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDLNRVLDEMRCQYETLV 315

Query: 820  KKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +   +D + W+                  QS Q+DI EL+R   ALEI+L+ Q++ + AL
Sbjct: 316  ENNRRDAEDWFNTQTEELNQQVVTSSEQLQSCQADIMELRRNVNALEIELQAQHSMRDAL 375

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            E+ L+ET++RYS QL  MQ +I + E +L  +R DLERQN E QVLL +++ LE EI TY
Sbjct: 376  ESTLAETEARYSSQLAQMQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRARLESEINTY 435

Query: 1177 RQLLE 1191
            R LLE
Sbjct: 436  RGLLE 440


>ref|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-like [Sus scrofa].
          Length = 613

 Score =  249 bits (635), Expect = 3e-66
 Identities = 153/390 (39%), Positives = 220/390 (56%), Gaps = 11/390 (2%)
 Frame = +1

Query: 55   GTMSSGY---SFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAG-GVXXXXXXXXXXXXX 222
            G+   GY   SFS    GS  G  GG  + G      S  GG G G              
Sbjct: 80   GSFGGGYGSSSFSSCGGGSFGGGYGGSSFGGGGFGGGSFGGGGGFGGGGFGGGSFGGGGG 139

Query: 223  XXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQ--- 393
                               K TM+NLNDRLASYLDKVRALE++N +LE  I +W+++   
Sbjct: 140  FGGGGFGGFGDGGLLNGNEKVTMQNLNDRLASYLDKVRALEDSNYELEVKIKEWYDKHGN 199

Query: 394  ---RDPGSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSL 564
               R+P   +DYS+Y + I  L+ QI +  + NA I++ +DNAR+A DDF +KYENE +L
Sbjct: 200  VGRREP---RDYSKYYKIIEDLKNQIINLTVDNANILIQVDNARLAADDFRMKYENEVTL 256

Query: 565  KKDLEIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNV 744
            ++ +E ++ GLR+ LD+LT+  TDLE ++E + +EL  +KK+HE+ M +    +   VNV
Sbjct: 257  RQSVEADINGLRRVLDELTLTKTDLEMQIESLNEELAYLKKNHEEEMRDLQNVSTGDVNV 316

Query: 745  KVDATPGEDLIKVLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTGQSG-QSD 921
            +++A PG DL ++L +MR +YE L ++  +D + W+                  S  +S+
Sbjct: 317  EMNAAPGVDLTELLNNMRSQYEQLAEQNRRDAEAWFNEKSKELTTEINTNIEQVSSYKSE 376

Query: 922  IHELKRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHD 1101
            I EL+RT Q LEI+L++Q   K +LE  L+ET+ RY  QL  +Q  I+  EE+L ++R +
Sbjct: 377  ITELRRTIQGLEIELQSQLALKQSLEASLAETEGRYCVQLAQIQSQITALEEQLQQIRAE 436

Query: 1102 LERQNNEIQVLLXIKSHLEKEIATYRQLLE 1191
             E QN E Q LL IK  LE EI TYR LLE
Sbjct: 437  TECQNAEYQQLLDIKIRLENEIQTYRSLLE 466


>ref|XP_003131489.2| PREDICTED: keratin, type I cuticular Ha3-II [Sus scrofa].
          Length = 439

 Score =  246 bits (627), Expect = 2e-65
 Identities = 130/305 (42%), Positives = 197/305 (64%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            KETM+ LNDRLASYL+KVR LE  N +LE  I +  +Q++P    +Y  Y  +I  LQ++
Sbjct: 91   KETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQQK 150

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I  GK  NA++++ IDNA++A DDF  KY+ E  L++ +E ++  LR+ LD+LT+   DL
Sbjct: 151  ILSGKSENARLVVQIDNAKLAADDFRTKYQTELGLRQLVESDINSLRRTLDELTLCKADL 210

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E +VE +++EL+ +K++HEQ +         ++N++VDA P  DL  VL + R +YE L+
Sbjct: 211  EAQVESLKEELLCLKQNHEQEVNSLRSQLGDRLNIEVDAAPTVDLNSVLSETRSQYEALV 270

Query: 820  KKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +   +D + W+ +                QS Q++I EL+RT  ALE++L+ Q+N + +L
Sbjct: 271  ETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRDSL 330

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            EN L+ET++RYS QL  +Q +I + E +L  +R DLERQN E QVLL +++ LE EI TY
Sbjct: 331  ENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRARLECEINTY 390

Query: 1177 RQLLE 1191
            R LLE
Sbjct: 391  RGLLE 395


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.312    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,442,745
Number of extensions: 775358
Number of successful extensions: 4498
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 4293
Number of HSP's successfully gapped: 61
Length of query: 397
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,829,335
Effective search space: 2613483160
Effective search space used: 2613483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013587
         (1192 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_203537.1| keratin, type I cytoskeletal 23 [Mus musculus].      483   e-137
Alignment   gi|NP_034792.1| keratin, type I cytoskeletal 13 [Mus musculus].      275   5e-74
Alignment   gi|NP_032497.1| keratin, type I cytoskeletal 19 [Mus musculus].      273   1e-73
Alignment   gi|NP_034793.1| keratin, type I cytoskeletal 17 [Mus musculus].      272   3e-73
Alignment   gi|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus].      271   6e-73
Alignment   gi|NP_032496.1| keratin, type I cytoskeletal 16 [Mus musculus].      270   2e-72
Alignment   gi|NP_058654.1| keratin, type I cytoskeletal 14 [Mus musculus].      269   3e-72
Alignment   gi|NP_034791.2| keratin, type I cytoskeletal 12 [Mus musculus].      269   4e-72
Alignment   gi|NP_032495.2| keratin, type I cytoskeletal 15 [Mus musculus].      266   2e-71
Alignment   gi|NP_058576.2| keratin, type I cuticular Ha5 [Mus musculus].        259   2e-69

>ref|NP_203537.1| keratin, type I cytoskeletal 23 [Mus musculus].
          Length = 422

 Score =  483 bits (1244), Expect = e-137
 Identities = 249/377 (66%), Positives = 294/377 (77%)
 Frame = +1

Query: 61   MSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXX 240
            M+S +SF+QT S S+H      G  GS   APSVHGGAGGV                   
Sbjct: 1    MNSSHSFNQTYSASVHSLGSTRGRQGSCHRAPSVHGGAGGVRISLSFTTPGCLPPGGSWG 60

Query: 241  XXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDY 420
                         K TM+NLNDRLA+YL+KVRALEEAN KLE+ IL+WH++R+P  ++DY
Sbjct: 61   SGRSSPLLGGNG-KATMQNLNDRLATYLEKVRALEEANSKLETRILRWHQEREPSHRKDY 119

Query: 421  SQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLR 600
            SQYEE+ISRLQEQI DGKM NA I++LIDNARMAVDDF+LK+ENEHSLKKDLEIEVEGLR
Sbjct: 120  SQYEENISRLQEQIVDGKMANAHIVVLIDNARMAVDDFNLKFENEHSLKKDLEIEVEGLR 179

Query: 601  KNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIK 780
            K LDDLTI+TTDLEQEVEGMRKELILMKK HEQ MEE+H+P+DFKV+VKVD TPGEDLIK
Sbjct: 180  KTLDDLTIVTTDLEQEVEGMRKELILMKKRHEQEMEENHLPSDFKVSVKVDTTPGEDLIK 239

Query: 781  VLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEI 960
            VLEDMRQEYEL+IKKKHQ+ D W++                Q  QSDIHEL+RTFQALEI
Sbjct: 240  VLEDMRQEYELIIKKKHQELDTWFREQSAAMAQEVASPAPVQGNQSDIHELRRTFQALEI 299

Query: 961  DLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLX 1140
            DL+ Q+++K+ALENML+ET++RYSC+LQDMQ+IISH+EE+L +LR DLERQNNE +VLL 
Sbjct: 300  DLQAQHSRKTALENMLTETRARYSCRLQDMQQIISHYEEELIQLRQDLERQNNEHKVLLG 359

Query: 1141 IKSHLEKEIATYRQLLE 1191
            IK+HLEKEIATYR+LLE
Sbjct: 360  IKTHLEKEIATYRRLLE 376


>ref|NP_034792.1| keratin, type I cytoskeletal 13 [Mus musculus].
          Length = 437

 Score =  275 bits (703), Expect = 5e-74
 Identities = 156/363 (42%), Positives = 223/363 (61%), Gaps = 2/363 (0%)
 Frame = +1

Query: 109  GAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKET 288
            G+AGG+G   S  +     GG GG                                 K T
Sbjct: 40   GSAGGYGGGMSCGFGGGAGGGFGGGFGGGFGGSYGGGFGGGFGDFGGVDGGLLSGNEKIT 99

Query: 289  MRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQEQIA 465
            M+NLNDRLASYLDKVRALE AN  LE  I  WH ++ P S ++DYS Y ++I  L+ +I 
Sbjct: 100  MQNLNDRLASYLDKVRALEAANADLEVKIRDWHLKQSPASPERDYSAYYKTIEELRIKIL 159

Query: 466  DGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDLEQ 645
            +    N +IIL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TDLE 
Sbjct: 160  EATTDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLAKTDLEM 219

Query: 646  EVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLIKK 825
            ++E + +EL  +KK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE L +K
Sbjct: 220  QIESLNEELAYLKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYEALAEK 279

Query: 826  KHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSALEN 1002
              +D + W++                 Q+ +++I EL+RT Q LEI+L++Q + K+ LE+
Sbjct: 280  NRRDAEEWFQTKSAELNKEVSSNAEMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLES 339

Query: 1003 MLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATYRQ 1182
             L+ET+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIATYR 
Sbjct: 340  TLAETECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIATYRS 399

Query: 1183 LLE 1191
            LLE
Sbjct: 400  LLE 402


>ref|NP_032497.1| keratin, type I cytoskeletal 19 [Mus musculus].
          Length = 403

 Score =  273 bits (699), Expect = 1e-73
 Identities = 155/388 (39%), Positives = 231/388 (59%), Gaps = 13/388 (3%)
 Frame = +1

Query: 67   SGYSFSQTLSGSLHGAAGGW----GWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXX 234
            + YS+ QT + S  G  GG     G  G F  APS+HGG+GG                  
Sbjct: 2    TSYSYRQTSAMSSFGGTGGGSVRIGSGGVFR-APSIHGGSGGRGVSVSSTRFVTSSSGSY 60

Query: 235  XXXXXXXXXXXXXXX--------KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHE 390
                                   K TM+NLNDRLASYLDKVRALE+AN +LE  I  W++
Sbjct: 61   GGVRGGSFSGTLAVSDGLLSGNEKITMQNLNDRLASYLDKVRALEQANGELEVKIRDWYQ 120

Query: 391  QRDPGSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKK 570
            ++ PG  +DY+ Y ++I  L+++I    + N++I+L IDNAR+A DDF  K+E EH+L+ 
Sbjct: 121  KQGPGPSRDYNHYFKTIEDLRDKILGATIDNSKIVLQIDNARLAADDFRTKFETEHALRL 180

Query: 571  DLEIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKV 750
             +E ++ GLR+ LD+LT+  TDLE ++E +++EL  +KK+HE+ +         +V+V+V
Sbjct: 181  SVEADINGLRRVLDELTLARTDLEMQIESLKEELAYLKKNHEEEITALRSQVGGQVSVEV 240

Query: 751  DATPGEDLIKVLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIH 927
            D+TPG DL K+L +MR +YE++ +K  +D +  Y                  Q  ++++ 
Sbjct: 241  DSTPGVDLAKILSEMRSQYEIMAEKNRKDAEATYLARIEELNTQVAVHSEQIQISKTEVT 300

Query: 928  ELKRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLE 1107
            +L+RT Q LEI+L++Q + K+ALE  L+ET++RY  QL  +Q +IS  E +L  +R D+E
Sbjct: 301  DLRRTLQGLEIELQSQLSMKAALEGTLAETEARYGVQLSQIQSVISGFEAQLSDVRADIE 360

Query: 1108 RQNNEIQVLLXIKSHLEKEIATYRQLLE 1191
            RQN E + L+ IKS LE+EIATYR LLE
Sbjct: 361  RQNQEYKQLMDIKSRLEQEIATYRSLLE 388


>ref|NP_034793.1| keratin, type I cytoskeletal 17 [Mus musculus].
          Length = 433

 Score =  272 bits (696), Expect = 3e-73
 Identities = 139/305 (45%), Positives = 207/305 (67%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            K TM+NLNDRLASYLDKVRALEEAN +LE  I  W++++ PG  +DYS Y  +I  L+ +
Sbjct: 85   KATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSAYYHTIEDLKNK 144

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I    + NA I+L IDNAR+A DDF  K+E E +L+  +E ++ GLR+ LD+LT+   DL
Sbjct: 145  ILVATVDNASILLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVLDELTLARADL 204

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E ++E +++EL  +KK+HE+ M         ++NV++DA PG DL ++L +MR +YE + 
Sbjct: 205  EMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKMA 264

Query: 820  KKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +K  +D + W +                 QSG+S+I EL+RT QALEI+L++Q + K++L
Sbjct: 265  EKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKASL 324

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            E  L+ET++RY  QL  +Q +I   EE+L +LR ++E+QN E ++LL +K+ LE+EIATY
Sbjct: 325  EGSLAETENRYCVQLSQIQGLIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 384

Query: 1177 RQLLE 1191
            R+LLE
Sbjct: 385  RRLLE 389


>ref|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus].
          Length = 452

 Score =  271 bits (694), Expect = 6e-73
 Identities = 140/305 (45%), Positives = 208/305 (68%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            KETM+NLNDRLA+YLD+VRALEEAN  LE  I +W++++ PG  +DYS Y ++I  L+ +
Sbjct: 95   KETMQNLNDRLATYLDRVRALEEANADLEVKIREWYKKQGPGPARDYSPYFKTIEDLRNK 154

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I    + NA I+L IDNAR+A DDF  KYE E +L+  +E ++ GLR+ LD+LT+   DL
Sbjct: 155  ILAATIDNASIVLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARADL 214

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E ++E +++EL  ++K+HE+ M          VNV++DA PG DL ++L +MR +YE + 
Sbjct: 215  EMQIESLKEELAYLRKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEKMA 274

Query: 820  KKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +K  +D + W+                  QS +++I EL+R+ Q LEI+L++Q + K++L
Sbjct: 275  EKNRKDAEEWFFTKTEELNREVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKASL 334

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            EN L+ET++RY  QL  +Q +IS  E++L  LR D+ERQN+E QVLL +K+ LE+EIATY
Sbjct: 335  ENSLAETEARYGAQLAQLQGLISSVEQQLCELRCDMERQNHEYQVLLDVKTRLEQEIATY 394

Query: 1177 RQLLE 1191
            R+LLE
Sbjct: 395  RRLLE 399


>ref|NP_032496.1| keratin, type I cytoskeletal 16 [Mus musculus].
          Length = 469

 Score =  270 bits (689), Expect = 2e-72
 Identities = 160/386 (41%), Positives = 228/386 (59%), Gaps = 2/386 (0%)
 Frame = +1

Query: 40   APDTDGTMSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAG-GVXXXXXXXXXXX 216
            AP T G MS   + S+  SG + G  GG+G  GSF  + S  GG G G            
Sbjct: 38   APSTCGGMS--VTSSRFSSGGVCGIGGGYG--GSFS-SSSFGGGLGSGFGGRFDGFGGGF 92

Query: 217  XXXXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQR 396
                                 K TM+NLNDRLA+YLDKVRALEEAN  LE  I  W++++
Sbjct: 93   GAGLGGGLGGGIGDGLLVGSEKVTMQNLNDRLATYLDKVRALEEANRDLEVKIRDWYQRQ 152

Query: 397  DPGSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDL 576
             P   +DYS Y ++I  L+ +I      NAQ  L IDNAR+A DDF  KYENE  L++ +
Sbjct: 153  RPTEIKDYSPYFKTIEDLKSKIIIATQENAQFTLQIDNARLAADDFRTKYENELFLRQSV 212

Query: 577  EIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDA 756
            E ++ GLRK LD+LT+   DLE ++E +R+EL  +KK+HE+ M          VNV++DA
Sbjct: 213  EGDINGLRKVLDELTLSRADLEMQIENLREELAFLKKNHEEEMLALRGQTGGDVNVEMDA 272

Query: 757  TPGEDLIKVLEDMRQEYELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHEL 933
             PG DL ++L +MR +YE + +K  +D + W+ +                QS +S++ EL
Sbjct: 273  APGVDLSRILNEMRDQYEQMAEKNRRDVEAWFLRKTEELNKEVASNSDLIQSNRSEVAEL 332

Query: 934  KRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQ 1113
            +R FQ LEI+L++Q + K++LEN L ET+ RY  QL  +Q +IS  EE+L +LR ++E+Q
Sbjct: 333  RRVFQGLEIELQSQLSMKASLENSLEETKGRYCMQLSQIQGLISSVEEQLAQLRCEMEQQ 392

Query: 1114 NNEIQVLLXIKSHLEKEIATYRQLLE 1191
            + E  +LL +K+ LE+EIATYR+LL+
Sbjct: 393  SQEYNILLDVKTRLEQEIATYRRLLD 418


>ref|NP_058654.1| keratin, type I cytoskeletal 14 [Mus musculus].
          Length = 484

 Score =  269 bits (688), Expect = 3e-72
 Identities = 139/305 (45%), Positives = 205/305 (67%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            K TM+NLNDRLA+YLDKVRALEEAN +LE  I  W++++ P   +DYS Y ++I  L+ +
Sbjct: 122  KVTMQNLNDRLATYLDKVRALEEANTELEVKIRDWYQRQRPTEIKDYSPYFKTIEDLKSK 181

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I    + NA ++L IDNAR+A DDF  K+E E SL+  +E ++ GLR+ LD+LT+   DL
Sbjct: 182  ILAATVDNANVLLQIDNARLAADDFRTKFETEQSLRMSVEADINGLRRVLDELTLARADL 241

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E ++E +++EL  +KK+HE+ M          VNV++DA PG DL ++L +MR +YE + 
Sbjct: 242  EMQIESLKEELAYLKKNHEEEMASMRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEKMA 301

Query: 820  KKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +K  +D + W +                 QSG+S+I EL+RT Q LEI+L++Q + K++L
Sbjct: 302  EKNRKDAEEWFFSKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASL 361

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            EN L ET+ RY  QL  +QE+I   EE+L +LR ++E+QN E ++LL +K+ LE+EIATY
Sbjct: 362  ENNLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 421

Query: 1177 RQLLE 1191
            R+LLE
Sbjct: 422  RRLLE 426


>ref|NP_034791.2| keratin, type I cytoskeletal 12 [Mus musculus].
          Length = 487

 Score =  269 bits (687), Expect = 4e-72
 Identities = 141/308 (45%), Positives = 208/308 (67%), Gaps = 4/308 (1%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQR---DPGSKQDYSQYEESISRL 450
            KETM+NLNDRLASYL KVR+LEEAN +LE+ I +W+E R   D GS+ DYS+Y   I  L
Sbjct: 120  KETMQNLNDRLASYLGKVRSLEEANAELENKIREWYETRRTRDAGSQSDYSKYYPLIEDL 179

Query: 451  QEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIIT 630
            + +I   +++NAQ++L IDNAR+A +DF +KYENE +L++ +E ++ GLR+ LD+LT+  
Sbjct: 180  KNKIVSARVSNAQLLLQIDNARLAAEDFRMKYENELALRQTVEADINGLRRVLDELTLTR 239

Query: 631  TDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYE 810
             DLE ++E + +EL  MKK+HE+ ++        +VNV++DA PG DL KVL +MR +YE
Sbjct: 240  ADLEAQLETLTEELAYMKKNHEEELQSFQAGGPGEVNVEMDAAPGVDLTKVLNEMRAQYE 299

Query: 811  LLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKK 987
             + ++  +D + W+ +                QS +S++ +LKR  Q LEI+L++Q   K
Sbjct: 300  AMAEQNRKDAEAWFLEKSRELRKEISSNTEQLQSSKSEVTDLKRMVQNLEIELQSQLAMK 359

Query: 988  SALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEI 1167
            S+LE  L+ET+  Y CQL  +Q++I   EE+L ++R D ERQN + Q LL +K+ LE EI
Sbjct: 360  SSLEGSLAETEGGYCCQLSQVQQLIGSLEEQLQQVRADAERQNADHQRLLGVKARLEMEI 419

Query: 1168 ATYRQLLE 1191
             TYR+LLE
Sbjct: 420  ETYRRLLE 427


>ref|NP_032495.2| keratin, type I cytoskeletal 15 [Mus musculus].
          Length = 456

 Score =  266 bits (681), Expect = 2e-71
 Identities = 136/306 (44%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSK-QDYSQYEESISRLQE 456
            K TM+NLNDRLASYLDKVRALE+AN +LE  I  W++++ P S  +DYS Y +++  +++
Sbjct: 99   KVTMQNLNDRLASYLDKVRALEQANTELEVKIRDWYQKQSPASPDRDYSHYFKTMEEIRD 158

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N++++L IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 159  KILAATIDNSRVVLEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLARTD 218

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  +KK+HE+ M+E       +VNV++DA PG DL ++L +MR++YE +
Sbjct: 219  LEMQIEQLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRMLAEMREQYEAI 278

Query: 817  IKKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W +                 Q+ +++I +L+RT Q LEI+L++Q + K+ 
Sbjct: 279  AEKNRRDVEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTLQGLEIELQSQLSMKAG 338

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LEN L+E + RY+ QLQ +Q +I+  E +L  LR ++E QN E  +LL IK+ LE+EIAT
Sbjct: 339  LENSLAEVECRYATQLQQIQGVITGLETQLSELRCEMEAQNQEYNMLLDIKTRLEQEIAT 398

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 399  YRNLLE 404


>ref|NP_058576.2| keratin, type I cuticular Ha5 [Mus musculus].
          Length = 455

 Score =  259 bits (663), Expect = 2e-69
 Identities = 140/305 (45%), Positives = 200/305 (65%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            KETM++LNDRLASYL+KVR LE+ N  LES I +W EQ+ P    DY  Y  ++  LQ++
Sbjct: 98   KETMQSLNDRLASYLEKVRQLEQENASLESRIREWCEQQVPYMCPDYQSYFRTMEELQKK 157

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
                K  NA++++ IDNA++A DDF  KYE E SL++ +E ++ GLR+ LDDLT+   DL
Sbjct: 158  TLCSKAENARLVVQIDNAKLAADDFRTKYETEVSLRQLVEADINGLRRILDDLTLCKADL 217

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E +VE +++EL+ +KK+HE+ +         ++NV+VDA P  DL +VL++MR +YE L+
Sbjct: 218  EAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDLNRVLDEMRCQYETLV 277

Query: 820  KKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +   +D + WY                  QS QSDI EL+RT  +LEI+L+ Q + + AL
Sbjct: 278  ENNRRDAEDWYDTQTEELNQQVVSSSEQLQSCQSDIIELRRTVNSLEIELQAQQSMRDAL 337

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            ++ L+ET+ RYS QL  MQ +I + E +LG +R DLERQN E QVLL +++ LE EI TY
Sbjct: 338  DSTLAETEGRYSSQLAQMQCMIGNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTY 397

Query: 1177 RQLLE 1191
            R LLE
Sbjct: 398  RGLLE 402


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.312    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,542,855
Number of extensions: 986868
Number of successful extensions: 5504
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 5207
Number of HSP's successfully gapped: 86
Length of query: 397
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 294
Effective length of database: 12,523,851
Effective search space: 3682012194
Effective search space used: 3682012194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013587
         (1192 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_056330.3| keratin, type I cytoskeletal 23 [Homo sapiens].      532   e-151
Alignment   gi|NP_000413.1| keratin, type I cytoskeletal 17 [Homo sapiens].      277   2e-74
Alignment   gi|NP_002267.2| keratin, type I cytoskeletal 19 [Homo sapiens].      276   3e-74
Alignment   gi|NP_002266.2| keratin, type I cytoskeletal 15 [Homo sapiens].      274   1e-73
Alignment   gi|NP_002265.2| keratin, type I cytoskeletal 13 isoform b [Homo...   273   2e-73
Alignment   gi|NP_705694.2| keratin, type I cytoskeletal 13 isoform a [Homo...   273   2e-73
Alignment   gi|NP_005548.2| keratin, type I cytoskeletal 16 [Homo sapiens].      273   2e-73
Alignment   gi|NP_000517.2| keratin, type I cytoskeletal 14 [Homo sapiens].      271   9e-73
Alignment   gi|NP_000214.1| keratin, type I cytoskeletal 12 [Homo sapiens].      261   7e-70
Alignment   gi|NP_003762.1| keratin, type I cuticular Ha6 [Homo sapiens].        259   3e-69

>ref|NP_056330.3| keratin, type I cytoskeletal 23 [Homo sapiens].
          Length = 422

 Score =  532 bits (1370), Expect = e-151
 Identities = 274/377 (72%), Positives = 302/377 (80%)
 Frame = +1

Query: 61   MSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXXXXXXXXXX 240
            M+SG+SFSQT S S HGA GGWG P SFP AP+VHGGAGG                    
Sbjct: 1    MNSGHSFSQTPSASFHGAGGGWGRPRSFPRAPTVHGGAGGARISLSFTTRSCPPPGGSWG 60

Query: 241  XXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDY 420
                         K TM+NLNDRLASYL+KVRALEEAN+KLES ILKWH+QRDPGSK+DY
Sbjct: 61   SGRSSPLLGGNG-KATMQNLNDRLASYLEKVRALEEANMKLESRILKWHQQRDPGSKKDY 119

Query: 421  SQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLR 600
            SQYEE+I+ LQEQI DGKMTNAQIILLIDNARMAVDDF+LKYENEHS KKDLEIEVEGLR
Sbjct: 120  SQYEENITHLQEQIVDGKMTNAQIILLIDNARMAVDDFNLKYENEHSFKKDLEIEVEGLR 179

Query: 601  KNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIK 780
            + LD+LTI+TTDLEQEVEGMRKELILMKKHHEQ ME+HH+P+DF VNVKVD  P EDLIK
Sbjct: 180  RTLDNLTIVTTDLEQEVEGMRKELILMKKHHEQEMEKHHVPSDFNVNVKVDTGPREDLIK 239

Query: 781  VLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEI 960
            VLEDMRQEYEL+IKKKH+D D WYK              T QS Q DIHELKRTFQALEI
Sbjct: 240  VLEDMRQEYELIIKKKHRDLDTWYKEQSAAMSQEAASPATVQSRQGDIHELKRTFQALEI 299

Query: 961  DLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLX 1140
            DL+TQY+ KSALENMLSETQSRYSC+LQDMQEIISH+EE+L +LRH+LERQNNE QVLL 
Sbjct: 300  DLQTQYSTKSALENMLSETQSRYSCKLQDMQEIISHYEEELTQLRHELERQNNEYQVLLG 359

Query: 1141 IKSHLEKEIATYRQLLE 1191
            IK+HLEKEI TYR+LLE
Sbjct: 360  IKTHLEKEITTYRRLLE 376


>ref|NP_000413.1| keratin, type I cytoskeletal 17 [Homo sapiens].
          Length = 432

 Score =  277 bits (708), Expect = 2e-74
 Identities = 141/305 (46%), Positives = 208/305 (68%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            K TM+NLNDRLASYLDKVRALEEAN +LE  I  W++++ PG  +DYSQY  +I  LQ +
Sbjct: 85   KATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQRQAPGPARDYSQYYRTIEELQNK 144

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I    + NA I+L IDNAR+A DDF  K+E E +L+  +E ++ GLR+ LD+LT+   DL
Sbjct: 145  ILTATVDNANILLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARADL 204

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E ++E +++EL  +KK+HE+ M         ++NV++DA PG DL ++L +MR +YE + 
Sbjct: 205  EMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILNEMRDQYEKMA 264

Query: 820  KKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +K  +D + W +                 QSG+S+I EL+RT QALEI+L++Q + K++L
Sbjct: 265  EKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKASL 324

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            E  L+ET++RY  QL  +Q +I   EE+L +LR ++E+QN E ++LL +K+ LE+EIATY
Sbjct: 325  EGNLAETENRYCVQLSQIQGLIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 384

Query: 1177 RQLLE 1191
            R+LLE
Sbjct: 385  RRLLE 389


>ref|NP_002267.2| keratin, type I cytoskeletal 19 [Homo sapiens].
          Length = 400

 Score =  276 bits (706), Expect = 3e-74
 Identities = 155/384 (40%), Positives = 229/384 (59%), Gaps = 9/384 (2%)
 Frame = +1

Query: 67   SGYSFSQTLSGSLHGAAGGWG---WPGSFPWAPSVHGGAGG-----VXXXXXXXXXXXXX 222
            + YS+ Q+ + S  G  GG      PG    APS+HGG+GG                   
Sbjct: 2    TSYSYRQSSATSSFGGLGGGSVRFGPGVAFRAPSIHGGSGGRGVSVSSARFVSSSSSGAY 61

Query: 223  XXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDP 402
                               K TM+NLNDRLASYLDKVRALE AN +LE  I  W++++ P
Sbjct: 62   GGGYGGVLTASDGLLAGNEKLTMQNLNDRLASYLDKVRALEAANGELEVKIRDWYQKQGP 121

Query: 403  GSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEI 582
            G  +DYS Y  +I  L+++I    + N++I+L IDNAR+A DDF  K+E E +L+  +E 
Sbjct: 122  GPSRDYSHYYTTIQDLRDKILGATIENSRIVLQIDNARLAADDFRTKFETEQALRMSVEA 181

Query: 583  EVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATP 762
            ++ GLR+ LD+LT+  TDLE ++EG+++EL  +KK+HE+ +         +V+V+VD+ P
Sbjct: 182  DINGLRRVLDELTLARTDLEMQIEGLKEELAYLKKNHEEEISTLRGQVGGQVSVEVDSAP 241

Query: 763  GEDLIKVLEDMRQEYELLIKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKR 939
            G DL K+L DMR +YE++ ++  +D + W+                  Q  +S++ +L+R
Sbjct: 242  GTDLAKILSDMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQMSRSEVTDLRR 301

Query: 940  TFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNN 1119
            T Q LEI+L++Q + K+ALE+ L+ET++R+  QL  +Q +IS  E +LG +R D ERQN 
Sbjct: 302  TLQGLEIELQSQLSMKAALEDTLAETEARFGAQLAHIQALISGIEAQLGDVRADSERQNQ 361

Query: 1120 EIQVLLXIKSHLEKEIATYRQLLE 1191
            E Q L+ IKS LE+EIATYR LLE
Sbjct: 362  EYQRLMDIKSRLEQEIATYRSLLE 385


>ref|NP_002266.2| keratin, type I cytoskeletal 15 [Homo sapiens].
          Length = 456

 Score =  274 bits (701), Expect = 1e-73
 Identities = 144/306 (47%), Positives = 212/306 (69%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQ-DYSQYEESISRLQE 456
            K TM+NLNDRLASYLDKVRALEEAN  LE  I  W++++ P S + DYSQY ++I  L++
Sbjct: 106  KITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYQKQTPTSPECDYSQYFKTIEELRD 165

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N+++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 166  KIMATTIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLARTD 225

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++EG+ +EL  +KK+HE+ M+E       +VNV++DA PG DL +VL +MR++YE +
Sbjct: 226  LEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAM 285

Query: 817  IKKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             +K  +D + W +                 Q+ +++I +L+RT Q LEI+L++Q + K+ 
Sbjct: 286  AEKNRRDVEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQELEIELQSQLSMKAG 345

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LEN L+ET+ RY+ QLQ +Q +I   E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 346  LENSLAETECRYATQLQQIQGLIGGLEAQLSELRCEMEAQNQEYKMLLDIKTRLEQEIAT 405

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 406  YRSLLE 411


>ref|NP_002265.2| keratin, type I cytoskeletal 13 isoform b [Homo sapiens].
          Length = 420

 Score =  273 bits (698), Expect = 2e-73
 Identities = 144/306 (47%), Positives = 211/306 (68%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYL+KVRALEEAN  LE  I  WH ++ P S ++DYS Y ++I  L++
Sbjct: 105  KITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQSPASPERDYSPYYKTIEELRD 164

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N ++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 165  KILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLSKTD 224

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  MKK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 225  LEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYEAM 284

Query: 817  IKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             ++  +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 285  AERNRRDAEEWFHAKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAG 344

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LEN ++ET+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 345  LENTVAETECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 404

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 405  YRSLLE 410


>ref|NP_705694.2| keratin, type I cytoskeletal 13 isoform a [Homo sapiens].
          Length = 458

 Score =  273 bits (698), Expect = 2e-73
 Identities = 144/306 (47%), Positives = 211/306 (68%), Gaps = 2/306 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGS-KQDYSQYEESISRLQE 456
            K TM+NLNDRLASYL+KVRALEEAN  LE  I  WH ++ P S ++DYS Y ++I  L++
Sbjct: 105  KITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQSPASPERDYSPYYKTIEELRD 164

Query: 457  QIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTD 636
            +I    + N ++IL IDNAR+A DDF LKYENE +L++ +E ++ GLR+ LD+LT+  TD
Sbjct: 165  KILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLSKTD 224

Query: 637  LEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELL 816
            LE ++E + +EL  MKK+HE+ M+E       +VNV++DATPG DL +VL +MR++YE +
Sbjct: 225  LEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYEAM 284

Query: 817  IKKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSA 993
             ++  +D + W+                  Q+ +++I EL+RT Q LEI+L++Q + K+ 
Sbjct: 285  AERNRRDAEEWFHAKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAG 344

Query: 994  LENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIAT 1173
            LEN ++ET+ RY+ QLQ +Q +IS  E +L  LR ++E QN E ++LL IK+ LE+EIAT
Sbjct: 345  LENTVAETECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIAT 404

Query: 1174 YRQLLE 1191
            YR LLE
Sbjct: 405  YRSLLE 410


>ref|NP_005548.2| keratin, type I cytoskeletal 16 [Homo sapiens].
          Length = 473

 Score =  273 bits (698), Expect = 2e-73
 Identities = 159/386 (41%), Positives = 226/386 (58%), Gaps = 2/386 (0%)
 Frame = +1

Query: 40   APDTDGTMSSGYSFSQTLS-GSLHGAAGGWGWPGSFPWAPSVHGGAGGVXXXXXXXXXXX 216
            AP T G    G S S   S G   G  GG+G  G F  + S   G GG            
Sbjct: 42   APSTYG---GGLSVSSRFSSGGACGLGGGYG--GGFSSSSSFGSGFGGGYGGGLGAGFGG 96

Query: 217  XXXXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQR 396
                                 K TM+NLNDRLASYLDKVRALEEAN  LE  I  W++++
Sbjct: 97   GLGAGFGGGFAGGDGLLVGSEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQ 156

Query: 397  DPGSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDL 576
             P   +DYS Y ++I  L+ +I    + NAQ IL IDNAR+A DDF  KYE+E +L++ +
Sbjct: 157  RPSEIKDYSPYFKTIEDLRNKIIAATIENAQPILQIDNARLAADDFRTKYEHELALRQTV 216

Query: 577  EIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDA 756
            E +V GLR+ LD+LT+  TDLE ++EG+++EL  ++K+HE+ M          VNV++DA
Sbjct: 217  EADVNGLRRVLDELTLARTDLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVNVEMDA 276

Query: 757  TPGEDLIKVLEDMRQEYELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHEL 933
             PG DL ++L +MR +YE + +K  +D + W+                  QS +S++ EL
Sbjct: 277  APGVDLSRILNEMRDQYEQMAEKNRRDAETWFLSKTEELNKEVASNSELVQSSRSEVTEL 336

Query: 934  KRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQ 1113
            +R  Q LEI+L++Q + K++LEN L ET+ RY  QL  +Q +I   EE+L +LR ++E+Q
Sbjct: 337  RRVLQGLEIELQSQLSMKASLENSLEETKGRYCMQLSQIQGLIGSVEEQLAQLRCEMEQQ 396

Query: 1114 NNEIQVLLXIKSHLEKEIATYRQLLE 1191
            + E Q+LL +K+ LE+EIATYR+LLE
Sbjct: 397  SQEYQILLDVKTRLEQEIATYRRLLE 422


>ref|NP_000517.2| keratin, type I cytoskeletal 14 [Homo sapiens].
          Length = 472

 Score =  271 bits (693), Expect = 9e-73
 Identities = 160/386 (41%), Positives = 228/386 (59%), Gaps = 2/386 (0%)
 Frame = +1

Query: 40   APDTDGTMSSGYSFSQTLSGSLHGAAGGWGWPGSFPWAPSVHG-GAGGVXXXXXXXXXXX 216
            AP T G   S  S S+  SG  +G  GG+G  G F  + S  G G GG            
Sbjct: 42   APSTYGGGLS-VSSSRFSSGGAYGLGGGYG--GGFSSSSSSFGSGFGG----GYGGGLGA 94

Query: 217  XXXXXXXXXXXXXXXXXXXXXKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQR 396
                                 K TM+NLNDRLASYLDKVRALEEAN  LE  I  W++++
Sbjct: 95   GLGGGFGGGFAGGDGLLVGSEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQ 154

Query: 397  DPGSKQDYSQYEESISRLQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDL 576
             P   +DYS Y ++I  L+ +I    + NA ++L IDNAR+A DDF  KYE E +L+  +
Sbjct: 155  RPAEIKDYSPYFKTIEDLRNKILTATVDNANVLLQIDNARLAADDFRTKYETELNLRMSV 214

Query: 577  EIEVEGLRKNLDDLTIITTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDA 756
            E ++ GLR+ LD+LT+   DLE ++E +++EL  +KK+HE+ M          VNV++DA
Sbjct: 215  EADINGLRRVLDELTLARADLEMQIESLKEELAYLKKNHEEEMNALRGQVGGDVNVEMDA 274

Query: 757  TPGEDLIKVLEDMRQEYELLIKKKHQDFDVW-YKXXXXXXXXXXXXXXTGQSGQSDIHEL 933
             PG DL ++L +MR +YE + +K  +D + W +                 QSG+S+I EL
Sbjct: 275  APGVDLSRILNEMRDQYEKMAEKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISEL 334

Query: 934  KRTFQALEIDLETQYNKKSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQ 1113
            +RT Q LEI+L++Q + K++LEN L ET+ RY  QL  +QE+I   EE+L +LR ++E+Q
Sbjct: 335  RRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 394

Query: 1114 NNEIQVLLXIKSHLEKEIATYRQLLE 1191
            N E ++LL +K+ LE+EIATYR+LLE
Sbjct: 395  NQEYKILLDVKTRLEQEIATYRRLLE 420


>ref|NP_000214.1| keratin, type I cytoskeletal 12 [Homo sapiens].
          Length = 494

 Score =  261 bits (668), Expect = 7e-70
 Identities = 137/309 (44%), Positives = 207/309 (66%), Gaps = 5/309 (1%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPG----SKQDYSQYEESISR 447
            KETM+NLNDRLASYLDKVRALEEAN +LE+ I +W+E R  G    S+ DYS+Y   I  
Sbjct: 126  KETMQNLNDRLASYLDKVRALEEANTELENKIREWYETRGTGTADASQSDYSKYYPLIED 185

Query: 448  LQEQIADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTII 627
            L+ +I    + NAQ++L IDNAR+A +DF +KYENE +L++ +E ++ GLR+ LD+LT+ 
Sbjct: 186  LRNKIISASIGNAQLLLQIDNARLAAEDFRMKYENELALRQGVEADINGLRRVLDELTLT 245

Query: 628  TTDLEQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEY 807
             TDLE ++E + +EL  MKK+HE  ++   +    +V+V++DA PG DL ++L DMR +Y
Sbjct: 246  RTDLEMQIESLNEELAYMKKNHEDELQSFRVGGPGEVSVEMDAAPGVDLTRLLNDMRAQY 305

Query: 808  ELLIKKKHQDFDVWY-KXXXXXXXXXXXXXXTGQSGQSDIHELKRTFQALEIDLETQYNK 984
            E + ++  +D + W+ +                QS +S++ +L+R FQ LEI+L++Q   
Sbjct: 306  ETIAEQNRKDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRAFQNLEIELQSQLAM 365

Query: 985  KSALENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKE 1164
            K +LE+ L+E +  Y  QL  +Q++IS+ E +L ++R D ERQN + Q LL +K+ LE E
Sbjct: 366  KKSLEDSLAEAEGDYCAQLSQVQQLISNLEAQLLQVRADAERQNVDHQRLLNVKARLELE 425

Query: 1165 IATYRQLLE 1191
            I TYR+LL+
Sbjct: 426  IETYRRLLD 434


>ref|NP_003762.1| keratin, type I cuticular Ha6 [Homo sapiens].
          Length = 467

 Score =  259 bits (663), Expect = 3e-69
 Identities = 140/305 (45%), Positives = 203/305 (66%), Gaps = 1/305 (0%)
 Frame = +1

Query: 280  KETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDPGSKQDYSQYEESISRLQEQ 459
            KETM+ LNDRLA+YL+KVR LE  N +LES I +W+E + P    DY  Y ++I   Q++
Sbjct: 94   KETMQFLNDRLANYLEKVRQLERENAELESRIQEWYEFQIPYICPDYQSYFKTIEDFQQK 153

Query: 460  IADGKMTNAQIILLIDNARMAVDDFSLKYENEHSLKKDLEIEVEGLRKNLDDLTIITTDL 639
            I   K  NA+++L IDNA++A DDF  KYE E SL++ +E ++ GLR+ LD+LT+   DL
Sbjct: 154  ILLTKSENARLVLQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCKADL 213

Query: 640  EQEVEGMRKELILMKKHHEQAMEEHHMPNDFKVNVKVDATPGEDLIKVLEDMRQEYELLI 819
            E +VE +++EL+ +KK+HE+ +         ++NV+VDA P  DL K+LEDMR +YE L+
Sbjct: 214  EAQVESLKEELMCLKKNHEEEVSVLRCQLGDRLNVEVDAAPPVDLNKILEDMRCQYEALV 273

Query: 820  KKKHQDFDVWYKXXXXXXXXXXXXXXTG-QSGQSDIHELKRTFQALEIDLETQYNKKSAL 996
            +   +D + W+                  Q  Q++I EL+RT  ALEI+L+ Q++ +++L
Sbjct: 274  ENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRTVNALEIELQAQHSMRNSL 333

Query: 997  ENMLSETQSRYSCQLQDMQEIISHHEEKLGRLRHDLERQNNEIQVLLXIKSHLEKEIATY 1176
            E+ L+ET++RYS QL  MQ +IS+ E +L  +R DLERQN E QVLL +K+ LE EIATY
Sbjct: 334  ESTLAETEARYSSQLAQMQCLISNVEAQLSEIRCDLERQNQEYQVLLDVKARLEGEIATY 393

Query: 1177 RQLLE 1191
            R LLE
Sbjct: 394  RHLLE 398


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.312    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,478,258
Number of extensions: 1204520
Number of successful extensions: 6831
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 6513
Number of HSP's successfully gapped: 87
Length of query: 397
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 292
Effective length of database: 14,835,944
Effective search space: 4332095648
Effective search space used: 4332095648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013587
         (1192 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                         878   0.0  
Sscrofa_Chr05                                                          64   2e-07

>Sscrofa_Chr12 
||          Length = 63588571

 Score =  878 bits (443), Expect = 0.0
 Identities = 456/459 (99%), Gaps = 1/459 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1        agttttgcggtgtcagggagcggaccagagcccagccctgccccggacacagatgggacc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21959184 agttttgcggtgtcagggagcggaccagagcccagccctgccccggacacagatgggacc 21959125

                                                                            
Query: 61       atgagctccggttacagcttcagccagaccctctcaggctccctccacggagccgcaggc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21959124 atgagctccggttacagcttcagccagaccctctcaggctccctccacggagccgcaggc 21959065

                                                                            
Query: 121      ggctggggctggccagggagcttcccctgggcccccagtgtccacgggggcgcagggggt 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21959064 ggctggggctggccagggagcttcccctgggcccccagtgtccacgggggcgcagggggt 21959005

                                                                            
Query: 181      gtccgcatctccctttccttctcctcaccacggagctgcccacccccaggcgggtcttgg 240
                |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 21959004 gtccgcatctccctttccttctcctcgccacggagctgcccacccccaggtgggtcttgg 21958945

                                                                            
Query: 241      gggtctggaaggggcagctctctcctaggcggaaatgggaaggagaccatgcggaacctc 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21958944 gggtctggaaggggcagctctctcctaggcggaaatgggaaggagaccatgcggaacctc 21958885

                                                                            
Query: 301      aacgaccgcctggcctcctacctggacaaggtgcgcgccctggaggaggccaacgtgaaa 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21958884 aacgaccgcctggcctcctacctggacaaggtgcgcgccctggaggaggccaacgtgaaa 21958825

                                                                            
Query: 361      ctggaaagttgcatcctgaagtggcatgagcagagagatccgggcagcaagcaagattac 420
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21958824 ctggaaag-tgcatcctgaagtggcatgagcagagagatccgggcagcaagcaagattac 21958766

                                                       
Query: 421      tcccagtatgaggaaagcatcagccgcctacaggagcag 459
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 21958765 tcccagtatgaggaaagcatcagccgcctacaggagcag 21958727



 Score =  357 bits (180), Expect = 9e-96
 Identities = 205/211 (97%), Gaps = 2/211 (0%)
 Strand = Plus / Minus

                                                                            
Query: 983      agaagtccgccttagagaatatgctatcggagacccagtcccggtactcctgccagctcc 1042
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 21943816 agaagtccgccttagagaatatgctatcggagacccagtcccggtactcctgccagcttc 21943757

                                                                            
Query: 1043     aggacatgcaagagatcatctcccaccacgaggaaaaattggggcggctacgtcacgatc 1102
                ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 21943756 aggacatgcaagagatcatatcccaccacgaggaagaattggggcggctacgtcacgatc 21943697

                                                                            
Query: 1103     tggaacgtcagaacaatgaaatac-aggtcctcctangtatcaaaagccacctagagaag 1161
                |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 21943696 tggaacgtcagaacaatg-aatacaaggtcctcctaggtatcaaaagccacctagagaag 21943638

                                               
Query: 1162     gaaatcgccacctaccgccagctcctggagg 1192
                |||||||||||||||||||||||||||||||
Sbjct: 21943637 gaaatcgccacctaccgccagctcctggagg 21943607



 Score =  327 bits (165), Expect = 8e-87
 Identities = 165/165 (100%)
 Strand = Plus / Minus

                                                                            
Query: 697      caggcaatggaggaacatcacatgccaaatgacttcaaggtcaacgtgaaggtggatgca 756
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21947670 caggcaatggaggaacatcacatgccaaatgacttcaaggtcaacgtgaaggtggatgca 21947611

                                                                            
Query: 757      accccgggagaagatctgattaaggtcctggaggatatgaggcaggaatacgagcttcta 816
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21947610 accccgggagaagatctgattaaggtcctggaggatatgaggcaggaatacgagcttcta 21947551

                                                             
Query: 817      attaagaagaagcatcaagacttcgacgtgtggtataaagagcag 861
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21947550 attaagaagaagcatcaagacttcgacgtgtggtataaagagcag 21947506



 Score =  313 bits (158), Expect = 1e-82
 Identities = 158/158 (100%)
 Strand = Plus / Minus

                                                                            
Query: 543      gtatgaaaatgaacactccttaaagaaagacttggaaattgaagttgagggcctccgaaa 602
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21950062 gtatgaaaatgaacactccttaaagaaagacttggaaattgaagttgagggcctccgaaa 21950003

                                                                            
Query: 603      gaacttggatgatctgaccatcatcacaacggacctggaacaggaggtcgaggggatgag 662
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21950002 gaacttggatgatctgaccatcatcacaacggacctggaacaggaggtcgaggggatgag 21949943

                                                      
Query: 663      gaaagagctcatcctcatgaagaagcaccatgagcagg 700
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 21949942 gaaagagctcatcctcatgaagaagcaccatgagcagg 21949905



 Score =  250 bits (126), Expect = 2e-63
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                            
Query: 859      cagtcagcagccatggcccaggaggcggccagtccagcaactgggcagagtggccaaagt 918
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21947421 cagtcagcagccatggcccaggaggcggccagtccagcaactgggcagagtggccaaagt 21947362

                                                                            
Query: 919      gacatccatgagctgaagcgcactttccaggccctggagattgacctagagacacagtac 978
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21947361 gacatccatgagctgaagcgcactttccaggccctggagattgacctagagacacagtac 21947302

                      
Query: 979      aacaag 984
                ||||||
Sbjct: 21947301 aacaag 21947296



 Score =  176 bits (89), Expect = 2e-41
 Identities = 89/89 (100%)
 Strand = Plus / Minus

                                                                            
Query: 457      cagatagcagatggcaagatgaccaacgctcagatcattcttctcattgacaacgcgagg 516
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21951694 cagatagcagatggcaagatgaccaacgctcagatcattcttctcattgacaacgcgagg 21951635

                                             
Query: 517      atggcagtggatgacttcagccttaagta 545
                |||||||||||||||||||||||||||||
Sbjct: 21951634 atggcagtggatgacttcagccttaagta 21951606



 Score =  145 bits (73), Expect = 6e-32
 Identities = 76/77 (98%)
 Strand = Plus / Plus

                                                                            
Query: 279      gaaggagaccatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgc 338
                |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21316367 gaaggagaccatgcagaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgc 21316426

                                 
Query: 339      cctggaggaggccaacg 355
                |||||||||||||||||
Sbjct: 21316427 cctggaggaggccaacg 21316443



 Score =  137 bits (69), Expect = 2e-29
 Identities = 75/77 (97%)
 Strand = Plus / Plus

                                                                            
Query: 279      gaaggagaccatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgc 338
                ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21339805 gaaggtgaccatgcagaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgc 21339864

                                 
Query: 339      cctggaggaggccaacg 355
                |||||||||||||||||
Sbjct: 21339865 cctggaggaggccaacg 21339881



 Score =  131 bits (66), Expect = 1e-27
 Identities = 69/70 (98%)
 Strand = Plus / Minus

                                                                            
Query: 286      accatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 345
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21494009 accatgcagaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 21493950

                          
Query: 346      gaggccaacg 355
                ||||||||||
Sbjct: 21493949 gaggccaacg 21493940



 Score =  123 bits (62), Expect = 2e-25
 Identities = 68/70 (97%)
 Strand = Plus / Plus

                                                                            
Query: 286      accatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 345
                ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21326651 accatgcagaacctcaatgaccgcctggcctcctacctggacaaggtgcgcgccctggag 21326710

                          
Query: 346      gaggccaacg 355
                ||||||||||
Sbjct: 21326711 gaggccaacg 21326720



 Score =  121 bits (61), Expect = 9e-25
 Identities = 67/69 (97%)
 Strand = Plus / Minus

                                                                            
Query: 286      accatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 345
                ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 21479432 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccctggag 21479373

                         
Query: 346      gaggccaac 354
                |||||||||
Sbjct: 21479372 gaggccaac 21479364



 Score =  121 bits (61), Expect = 9e-25
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 279      gaaggagaccatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgc 338
                ||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 21785272 gaaggtgaccatgcagaacctcaatgaccgcctggcctcctacctggacaacgtgcgcgc 21785213

                                 
Query: 339      cctggaggaggccaacg 355
                |||||||||||||||||
Sbjct: 21785212 cctggaggaggccaacg 21785196



 Score =  121 bits (61), Expect = 9e-25
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 279      gaaggagaccatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgc 338
                ||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 21811593 gaaggtgaccatgcagaacctcaatgaccgcctggcctcctacctggacaacgtgcgcgc 21811534

                                 
Query: 339      cctggaggaggccaacg 355
                |||||||||||||||||
Sbjct: 21811533 cctggaggaggccaacg 21811517



 Score =  107 bits (54), Expect = 1e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                            
Query: 286      accatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 345
                ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 21537114 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 21537173

                          
Query: 346      gaggccaacg 355
                 |||||||||
Sbjct: 21537174 caggccaacg 21537183



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                            
Query: 285      gaccatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctgga 344
                |||||||| ||||||||| |||||||||||||||||||||||| | ||||| || |||||
Sbjct: 21799554 gaccatgcagaacctcaatgaccgcctggcctcctacctggaccatgtgcgtgctctgga 21799495

                           
Query: 345      ggaggccaacg 355
                |||||||||||
Sbjct: 21799494 ggaggccaacg 21799484



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                            
Query: 274      aatgggaaggagaccatgcggaacctcaacgaccgcctggcctcctacctggacaaggtg 333
                |||| ||||| ||| |||| ||| ||||| ||||||||||| ||||||||||| || |||
Sbjct: 21829575 aatgagaaggtgactatgcagaatctcaatgaccgcctggcatcctacctggataacgtg 21829516

                                 
Query: 334      cgcgccctggaggaggc 350
                || || |||||||||||
Sbjct: 21829515 cgagctctggaggaggc 21829499



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 286      accatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 345
                ||||||| ||||||||| ||||||||||||   ||||| ||||||||  | ||| |||||
Sbjct: 22060713 accatgcagaacctcaatgaccgcctggccaattacctagacaaggtcagggccttggag 22060654

                          
Query: 346      gaggccaacg 355
                ||||||||||
Sbjct: 22060653 gaggccaacg 22060644


>Sscrofa_Chr05 
||          Length = 111506441

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 279      gaaggagaccatgcggaacctcaacgaccgcctggcctcctacctgga 326
                |||||||||||||| | |||| || |||||||||||||||||||||||
Sbjct: 18726331 gaaggagaccatgcaggacctgaatgaccgcctggcctcctacctgga 18726378


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,395,542
Number of extensions: 270
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 18
Length of query: 1192
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1171
Effective length of database: 2,808,413,156
Effective search space: 3288651805676
Effective search space used: 3288651805676
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)