Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013592
(1003 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548561.1| PREDICTED: similar to leucine zipper and CTNNBI... 273 2e-73
Alignment gi|XP_850747.1| PREDICTED: similar to catenin, beta interacting... 50 3e-06
>ref|XP_548561.1| PREDICTED: similar to leucine zipper and CTNNBIP1 domain containing
[Canis familiaris].
Length = 190
Score = 273 bits (697), Expect = 2e-73
Identities = 152/190 (80%), Positives = 153/190 (80%)
Frame = +3
Query: 222 MASRGKTETSKLKQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSEFNDSL 401
MASRGKTETSKLKQN QLSEFNDSL
Sbjct: 1 MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDADEYEETKKETLEQLSEFNDSL 60
Query: 402 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 581
KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG
Sbjct: 61 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 120
Query: 582 KLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAILSQFEKVSTDLGSGDKVLAL 761
KLER LYTQQKVEILTALRKLGEKLTADDEAFL+ANAGAILSQFEKVSTDLGSGDKVLAL
Sbjct: 121 KLERGLYTQQKVEILTALRKLGEKLTADDEAFLSANAGAILSQFEKVSTDLGSGDKVLAL 180
Query: 762 ASFEVEKTKK 791
ASFEVEKTKK
Sbjct: 181 ASFEVEKTKK 190
>ref|XP_850747.1| PREDICTED: similar to catenin, beta interacting protein 1 [Canis
familiaris].
Length = 560
Score = 50.1 bits (118), Expect = 3e-06
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +3
Query: 558 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAILSQFEKV 722
M+R+ GK ++Y QQKV +L LRK+G LTA++E FL AG + SQ ++
Sbjct: 221 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTANEEEFLRTYAGVVNSQLSQL 275
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,819,770
Number of extensions: 690603
Number of successful extensions: 1809
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1808
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013592
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013592
(1003 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001249474.3| PREDICTED: leucine zipper and CTNNBIP1 domai... 199 4e-51
Alignment gi|XP_002694106.1| PREDICTED: leucine zipper and CTNNBIP1 domai... 72 6e-13
Alignment gi|NP_001032219.1| beta-catenin-interacting protein 1 [Bos taur... 59 7e-09
Alignment gi|XP_001253763.1| PREDICTED: catenin, beta interacting protein... 50 2e-06
>ref|XP_001249474.3| PREDICTED: leucine zipper and CTNNBIP1 domain containing [Bos
taurus].
Length = 164
Score = 199 bits (505), Expect = 4e-51
Identities = 120/190 (63%), Positives = 122/190 (64%)
Frame = +3
Query: 222 MASRGKTETSKLKQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSEFNDSL 401
MASRGKTETSKLKQN QLSEFNDSL
Sbjct: 1 MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDTDEYEETKKETLEQLSEFNDSL 60
Query: 402 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 581
KKIMSGNMTLVDELSGMQL L L +MDRDLMVG
Sbjct: 61 KKIMSGNMTLVDELSGMQL--------------------------LHIHLLQMDRDLMVG 94
Query: 582 KLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAILSQFEKVSTDLGSGDKVLAL 761
KL RDLYTQQKVEILTALRKLGEKLTADDE FL+ANAGAILSQFEKVSTDLGSGDKVLAL
Sbjct: 95 KLARDLYTQQKVEILTALRKLGEKLTADDENFLSANAGAILSQFEKVSTDLGSGDKVLAL 154
Query: 762 ASFEVEKTKK 791
ASFEVEKTKK
Sbjct: 155 ASFEVEKTKK 164
>ref|XP_002694106.1| PREDICTED: leucine zipper and CTNNBIP1 domain containing-like [Bos
taurus].
Length = 106
Score = 72.4 bits (176), Expect = 6e-13
Identities = 44/92 (47%), Positives = 46/92 (50%)
Frame = +3
Query: 222 MASRGKTETSKLKQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSEFNDSL 401
MASRGKTETSKLKQN QLSEFNDSL
Sbjct: 1 MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDTDEYEETKKETLEQLSEFNDSL 60
Query: 402 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTP 497
KKIMSGNMTLVDELSGMQL ++ P
Sbjct: 61 KKIMSGNMTLVDELSGMQLRATPSLRDLLSLP 92
>ref|NP_001032219.1| beta-catenin-interacting protein 1 [Bos taurus].
Length = 81
Score = 58.9 bits (141), Expect = 7e-09
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Frame = +3
Query: 558 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAI---LSQFEKVST 728
M+R+ GK ++Y QQKV +L LRK+G LTA++E FL AG + LSQ + S
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTANEEEFLRTYAGVVNSQLSQLPQHSI 60
Query: 729 DLGSGDKVLALASFEVEKTKK 791
D G+ D V+A + E E ++
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
>ref|XP_001253763.1| PREDICTED: catenin, beta interacting protein 1-like [Bos taurus].
Length = 299
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +3
Query: 558 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAI---LSQFEKVST 728
M+R+ GK ++Y QQKV +L LRK+G LTA++E FL AG + LSQ + S
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTANEEEFLRTYAGVVNSQLSQLPQHSI 60
Query: 729 DLG 737
D G
Sbjct: 61 DQG 63
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,455,274
Number of extensions: 670678
Number of successful extensions: 2007
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 4
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013592
(1003 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362151.1| PREDICTED: protein LZIC-like [Sus scrofa]. 276 1e-74
>ref|XP_003362151.1| PREDICTED: protein LZIC-like [Sus scrofa].
Length = 190
Score = 276 bits (707), Expect = 1e-74
Identities = 154/190 (81%), Positives = 154/190 (81%)
Frame = +3
Query: 222 MASRGKTETSKLKQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSEFNDSL 401
MASRGKTETSKLKQN QLSEFNDSL
Sbjct: 1 MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDTDEYEETKKETLEQLSEFNDSL 60
Query: 402 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 581
KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG
Sbjct: 61 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 120
Query: 582 KLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAILSQFEKVSTDLGSGDKVLAL 761
KLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAILSQFEKVSTDLGSGDKVLAL
Sbjct: 121 KLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAILSQFEKVSTDLGSGDKVLAL 180
Query: 762 ASFEVEKTKK 791
ASFEVEKTKK
Sbjct: 181 ASFEVEKTKK 190
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,535,691
Number of extensions: 425047
Number of successful extensions: 1145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013592
(1003 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081239.1| protein LZIC [Mus musculus]. 260 1e-69
Alignment gi|NP_001135402.1| beta-catenin-interacting protein 1 [Mus musc... 59 8e-09
Alignment gi|NP_075954.1| beta-catenin-interacting protein 1 [Mus musculu... 59 8e-09
>ref|NP_081239.1| protein LZIC [Mus musculus].
Length = 190
Score = 260 bits (664), Expect = 1e-69
Identities = 143/190 (75%), Positives = 149/190 (78%)
Frame = +3
Query: 222 MASRGKTETSKLKQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSEFNDSL 401
MASRGKTETSKLKQN QLSEFNDSL
Sbjct: 1 MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDADEYEETKKETLEQLSEFNDSL 60
Query: 402 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 581
KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG
Sbjct: 61 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 120
Query: 582 KLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAILSQFEKVSTDLGSGDKVLAL 761
KLER+LYTQ+KVEILTALRKLGEKLT DDE FL+ANA A+LSQFEKVST+LGSGDKVLAL
Sbjct: 121 KLERELYTQRKVEILTALRKLGEKLTEDDETFLSANASAVLSQFEKVSTELGSGDKVLAL 180
Query: 762 ASFEVEKTKK 791
A F+VEK KK
Sbjct: 181 AGFDVEKAKK 190
>ref|NP_001135402.1| beta-catenin-interacting protein 1 [Mus musculus].
Length = 81
Score = 58.5 bits (140), Expect = 8e-09
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 558 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAI---LSQFEKVST 728
M+R+ GK ++Y QQKV +L LRK+G LTA +E FL AG + LSQ + S
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVSSQLSQLPQHSI 60
Query: 729 DLGSGDKVLALASFEVEKTKK 791
D G+ D V+A + E E ++
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
>ref|NP_075954.1| beta-catenin-interacting protein 1 [Mus musculus].
Length = 81
Score = 58.5 bits (140), Expect = 8e-09
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 558 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAI---LSQFEKVST 728
M+R+ GK ++Y QQKV +L LRK+G LTA +E FL AG + LSQ + S
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVSSQLSQLPQHSI 60
Query: 729 DLGSGDKVLALASFEVEKTKK 791
D G+ D V+A + E E ++
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,865,827
Number of extensions: 593378
Number of successful extensions: 1741
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1740
Number of HSP's successfully gapped: 3
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013592
(1003 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115744.2| protein LZIC [Homo sapiens]. 275 5e-74
Alignment gi|NP_001012329.1| beta-catenin-interacting protein 1 [Homo sap... 58 2e-08
Alignment gi|NP_064633.1| beta-catenin-interacting protein 1 [Homo sapien... 58 2e-08
>ref|NP_115744.2| protein LZIC [Homo sapiens].
Length = 190
Score = 275 bits (703), Expect = 5e-74
Identities = 152/190 (80%), Positives = 154/190 (81%)
Frame = +3
Query: 222 MASRGKTETSKLKQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSEFNDSL 401
MASRGKTETSKLKQN QLSEFNDSL
Sbjct: 1 MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDTDEYEETKKETLEQLSEFNDSL 60
Query: 402 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 581
KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG
Sbjct: 61 KKIMSGNMTLVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVG 120
Query: 582 KLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAILSQFEKVSTDLGSGDKVLAL 761
KLERDLYTQQKVEILTALRKLGEKLTADDEAFL+ANAGAILSQFEKVSTDLGSGDK+LAL
Sbjct: 121 KLERDLYTQQKVEILTALRKLGEKLTADDEAFLSANAGAILSQFEKVSTDLGSGDKILAL 180
Query: 762 ASFEVEKTKK 791
ASFEVEKTKK
Sbjct: 181 ASFEVEKTKK 190
>ref|NP_001012329.1| beta-catenin-interacting protein 1 [Homo sapiens].
Length = 81
Score = 57.8 bits (138), Expect = 2e-08
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +3
Query: 558 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAI---LSQFEKVST 728
M+R+ GK ++Y QQKV +L LRK+G LTA +E FL AG + LSQ S
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPPHSI 60
Query: 729 DLGSGDKVLALASFEVEKTKK 791
D G+ D V+A + E E ++
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
>ref|NP_064633.1| beta-catenin-interacting protein 1 [Homo sapiens].
Length = 81
Score = 57.8 bits (138), Expect = 2e-08
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +3
Query: 558 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAI---LSQFEKVST 728
M+R+ GK ++Y QQKV +L LRK+G LTA +E FL AG + LSQ S
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPPHSI 60
Query: 729 DLGSGDKVLALASFEVEKTKK 791
D G+ D V+A + E E ++
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,366,379
Number of extensions: 689264
Number of successful extensions: 1888
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1887
Number of HSP's successfully gapped: 3
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013592
(1003 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896352.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 450 e-124
gb|GL896274.2| Sus scrofa unplaced genomic scaffold ChrUScaf4158 319 2e-84
>gb|GL896352.1| Sus scrofa unplaced genomic scaffold chrU_scaffold700
Length = 40716
Score = 450 bits (227), Expect = e-124
Identities = 255/269 (94%)
Strand = Plus / Minus
Query: 735 ggctctggagacaaagttcttgctttggcaagttttgaggttgnnnnnnnnnnnnnntga 794
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 34676 ggctctggagacaaagttcttgctttggcaagttttgaggttgaaaaaacaaaaaaatga 34617
Query: 795 catggtgtgaaagctggggacgttgatcttgttctcgttgtaaatgcatttttcttctgg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34616 catggtgtgaaagctggggacgttgatcttgttctcgttgtaaatgcatttttcttctgg 34557
Query: 855 ggattttgagtcattgcaaagaagtcaagagattcatgaaatgtattaatcacctaaaca 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34556 ggattttgagtcattgcaaagaagtcaagagattcatgaaatgtattaatcacctaaaca 34497
Query: 915 aaggcgtcagaaaaaatacttgtagcttctgttcctgcccttcatcatcgtgctttgtgc 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34496 aaggcgtcagaaaaaatacttgtagcttctgttcctgcccttcatcatcgtgctttgtgc 34437
Query: 975 agagttacctgcctcagtgatcctcgacc 1003
|||||||||||||||||||||||||||||
Sbjct: 34436 agagttacctgcctcagtgatcctcgacc 34408
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 320 cagagaagaacttgatacagatgaatacgaagaaaccaaaaaggaaactttggagcaact 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38164 cagagaagaacttgatacagatgaatacgaagaaaccaaaaaggaaactttggagcaact 38105
Query: 380 aagtgaatttaatgattcactgaagaaaattatgtctggaaatatgactttggtagatga 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38104 aagtgaatttaatgattcactgaagaaaattatgtctggaaatatgactttggtagatga 38045
Query: 440 actaagtggaatgcagctgg 459
||||||||||||||||||||
Sbjct: 38044 actaagtggaatgcagctgg 38025
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 212 agagcttaaaatggcttccagaggaaagacagagacaagcaaattaaagcagaatttaga 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39409 agagcttaaaatggcttccagaggaaagacagagacaagcaaattaaagcagaatttaga 39350
Query: 272 agagcagttggatagactaatgcagcagttacaagacctggaggaatgcag 322
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39349 agagcagttggatagactaatgcagcagttacaagacctggaggaatgcag 39299
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 458 ggctatccaggcagctatcagccaggcctttaaaactccagaggtcatcagattgtttgc 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37620 ggctatccaggcagctatcagccaggcctttaaaactccagaggtcatcagattgtttgc 37561
Query: 518 aaagaaacaaccaggtcagcttcggacaaggttagcagag 557
||||||||||||||||||||||||||||||||||||||||
Sbjct: 37560 aaagaaacaaccaggtcagcttcggacaaggttagcagag 37521
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 556 agatggatagagatctcatggttgggaagctggaaagagacctgtatacgcaacagaaag 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35893 agatggatagagatctcatggttgggaagctggaaagagacctgtatacgcaacagaaag 35834
Query: 616 tggagatactaacagctctcaggaaactcggagagaag 653
||||||||||||||||||||||||||||||||||||||
Sbjct: 35833 tggagatactaacagctctcaggaaactcggagagaag 35796
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 652 agctgactgcagacgatgaggccttcttggcagcaaacgcaggtgctatactcagccagt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35631 agctgactgcagacgatgaggccttcttggcagcaaacgcaggtgctatactcagccagt 35572
Query: 712 ttgagaaggtctctacagaccttgg 736
|||||||||||||||||||||||||
Sbjct: 35571 ttgagaaggtctctacagaccttgg 35547
>gb|GL896274.2| Sus scrofa unplaced genomic scaffold ChrUScaf4158
Length = 49151
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 53 cagccagctccaccctcaggtggtttgaactttgaacttcttgccctgatgaacagtttc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48208 cagccagctccaccctcaggtggtttgaactttgaacttcttgccctgatgaacagtttc 48267
Query: 113 gcgttcctcaagtttataacacttgaaactacaagaactggcggttttatgcagtttgag 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48268 gcgttcctcaagtttataacacttgaaactacaagaactggcggttttatgcagtttgag 48327
Query: 173 accagtcagcactaagcagagttcggagtgctaagagaaag 213
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 48328 accagtcagcactaagcagagttcggagtgctaagagaaag 48368
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,965,469
Number of extensions: 234
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 8
Length of query: 1003
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 982
Effective length of database: 2,808,413,156
Effective search space: 2757861719192
Effective search space used: 2757861719192
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)