Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013593
(1054 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077180.1| tumor necrosis factor alpha-induced protein ... 362 e-100
Alignment gi|XP_002690972.1| PREDICTED: tumor necrosis factor, alpha-indu... 254 1e-67
Alignment gi|XP_601426.4| PREDICTED: tumor necrosis factor, alpha-induced... 254 1e-67
Alignment gi|NP_001096740.1| tumor necrosis factor alpha-induced protein ... 239 2e-63
Alignment gi|NP_001029561.1| tumor necrosis factor alpha-induced protein ... 206 2e-53
>ref|NP_001077180.1| tumor necrosis factor alpha-induced protein 8 [Bos taurus].
Length = 198
Score = 362 bits (930), Expect = e-100
Identities = 179/188 (95%), Positives = 185/188 (98%)
Frame = +3
Query: 111 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 290
+ATDVFNSKNLAVQAQKKILGKM SKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK
Sbjct: 11 VATDVFNSKNLAVQAQKKILGKMASKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 70
Query: 291 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 470
IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLS+
Sbjct: 71 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSK 130
Query: 471 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 650
LLNECRE+LHQIIQRHLT KSHGR+N VFDHFSDCDFLAALYNPFGN+KPHLQKLCDGIN
Sbjct: 131 LLNECREMLHQIIQRHLTTKSHGRVNNVFDHFSDCDFLAALYNPFGNYKPHLQKLCDGIN 190
Query: 651 KMLDEDNI 674
KMLDE+NI
Sbjct: 191 KMLDEENI 198
>ref|XP_002690972.1| PREDICTED: tumor necrosis factor, alpha-induced protein 8-like
3-like [Bos taurus].
Length = 204
Score = 254 bits (648), Expect = 1e-67
Identities = 115/189 (60%), Positives = 162/189 (85%)
Frame = +3
Query: 99 PPLPMATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKK 278
P DVF+SKNLA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+ NKK
Sbjct: 13 PGTAAGPDVFSSKNLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHIHNKK 72
Query: 279 EAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRN 458
EA KI+K+LIK IK+ ILYRNNQF+ +E+ ++EKF+KK++Q AMT+VSF++V++TFDRN
Sbjct: 73 EAHKIMKDLIKVAIKIGILYRNNQFSPEEVVIVEKFRKKLNQTAMTIVSFYEVEYTFDRN 132
Query: 459 VLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLC 638
VLS+LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY+ G+ +P+L+K+C
Sbjct: 133 VLSKLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKKIC 192
Query: 639 DGINKMLDE 665
+GINK++DE
Sbjct: 193 EGINKLIDE 201
>ref|XP_601426.4| PREDICTED: tumor necrosis factor, alpha-induced protein 8-like
3-like [Bos taurus].
Length = 204
Score = 254 bits (648), Expect = 1e-67
Identities = 115/189 (60%), Positives = 162/189 (85%)
Frame = +3
Query: 99 PPLPMATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKK 278
P DVF+SKNLA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+ NKK
Sbjct: 13 PGTAAGPDVFSSKNLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHIHNKK 72
Query: 279 EAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRN 458
EA KI+K+LIK IK+ ILYRNNQF+ +E+ ++EKF+KK++Q AMT+VSF++V++TFDRN
Sbjct: 73 EAHKIMKDLIKVAIKIGILYRNNQFSPEEVVIVEKFRKKLNQTAMTIVSFYEVEYTFDRN 132
Query: 459 VLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLC 638
VLS+LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY+ G+ +P+L+K+C
Sbjct: 133 VLSKLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKKIC 192
Query: 639 DGINKMLDE 665
+GINK++DE
Sbjct: 193 EGINKLIDE 201
>ref|NP_001096740.1| tumor necrosis factor alpha-induced protein 8-like protein 1 [Bos
taurus].
Length = 186
Score = 239 bits (611), Expect = 2e-63
Identities = 110/185 (59%), Positives = 149/185 (80%)
Frame = +3
Query: 120 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 299
D F++K+LA+QAQKK+L KM S+++A+ IDDTSSEVLDELYR TKE+T+++KEA+K++K
Sbjct: 2 DTFSTKSLALQAQKKLLSKMASRAVASAFIDDTSSEVLDELYRATKEFTRSRKEAQKLVK 61
Query: 300 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 479
NL+K +KL +L R Q +ELA +++ +++ +LAMT VSFHQVDFTFDR VL+ L
Sbjct: 62 NLVKVAVKLGVLLRAGQLGAEELARLQRLRQQARRLAMTAVSFHQVDFTFDRRVLATTLL 121
Query: 480 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 659
ECR+LLHQ HLTAKSHGRIN VF H +DCDFLAALY+P ++ HL+++CDG+ +ML
Sbjct: 122 ECRDLLHQAAGAHLTAKSHGRINHVFGHLADCDFLAALYSPAEPYRSHLRRICDGLTRML 181
Query: 660 DEDNI 674
DED+I
Sbjct: 182 DEDSI 186
>ref|NP_001029561.1| tumor necrosis factor alpha-induced protein 8-like protein 2 [Bos
taurus].
Length = 184
Score = 206 bits (525), Expect = 2e-53
Identities = 98/183 (53%), Positives = 140/183 (76%)
Frame = +3
Query: 126 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 305
F+SK+L +QA+KK+L KM +S+A D+TSSEVLDELYRV+KEYT+++ +A+++IK+L
Sbjct: 4 FSSKSLVLQAEKKLLSKMAGRSVAHLFADETSSEVLDELYRVSKEYTRSRPQAQRVIKDL 63
Query: 306 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 485
IK +K+A+L+R+ FN ELAL +F++K+ Q AMT +SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAVKVAVLHRSGCFNPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLASLLTEC 123
Query: 486 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 665
R++L ++++RHLT KSHGRI VFDHFSD L ALY P ++ HL K+C G+ K+LDE
Sbjct: 124 RDVLLELVERHLTPKSHGRIRHVFDHFSDAGLLTALYGP--DYTQHLGKICGGLRKLLDE 181
Query: 666 DNI 674
+
Sbjct: 182 GKL 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,732,875
Number of extensions: 820123
Number of successful extensions: 2243
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2240
Number of HSP's successfully gapped: 5
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013593
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013593
(1054 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538548.2| PREDICTED: similar to tumor necrosis factor, al... 365 e-101
Alignment gi|XP_544677.2| PREDICTED: similar to tumor necrosis factor, al... 253 2e-67
Alignment gi|XP_542152.1| PREDICTED: similar to tumor necrosis factor, al... 242 5e-64
Alignment gi|XP_540310.2| PREDICTED: similar to tumor necrosis factor, al... 207 1e-53
>ref|XP_538548.2| PREDICTED: similar to tumor necrosis factor, alpha-induced protein
8 [Canis familiaris].
Length = 386
Score = 365 bits (936), Expect = e-101
Identities = 180/188 (95%), Positives = 187/188 (99%)
Frame = +3
Query: 111 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 290
+ATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK
Sbjct: 199 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 258
Query: 291 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 470
IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQV++TFDRNVLSR
Sbjct: 259 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVEYTFDRNVLSR 318
Query: 471 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 650
LLNECRE+LHQIIQRHLTAKSHGR+N VFDHFSDCDFLAALYNPFGNFKPHLQKLCDG+N
Sbjct: 319 LLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGVN 378
Query: 651 KMLDEDNI 674
KMLDE+NI
Sbjct: 379 KMLDEENI 386
>ref|XP_544677.2| PREDICTED: similar to tumor necrosis factor, alpha-induced protein
8-like 3 [Canis familiaris].
Length = 213
Score = 253 bits (647), Expect = 2e-67
Identities = 114/187 (60%), Positives = 164/187 (87%)
Frame = +3
Query: 105 LPMATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEA 284
L + DVF+SKNLA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+T NKKEA
Sbjct: 24 LTVGPDVFSSKNLALQAQKKILSKIASKTMANMLIDDTSSEIFDELYKVTKEHTHNKKEA 83
Query: 285 EKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVL 464
KI+K+LIK +K+ ILYR+NQF+Q+E+ ++EK +KK++Q AMT+VSF++V++TFDRNVL
Sbjct: 84 HKIMKDLIKVAVKIGILYRHNQFSQEEVVIVEKLRKKLNQTAMTIVSFYEVEYTFDRNVL 143
Query: 465 SRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDG 644
S+LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY+ G+ +P+L+++C+G
Sbjct: 144 SKLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKRICEG 203
Query: 645 INKMLDE 665
INK+LDE
Sbjct: 204 INKLLDE 210
>ref|XP_542152.1| PREDICTED: similar to tumor necrosis factor, alpha-induced protein
8-like 1 [Canis familiaris].
Length = 267
Score = 242 bits (617), Expect = 5e-64
Identities = 113/197 (57%), Positives = 152/197 (77%)
Frame = +3
Query: 84 PSATGPPLPMATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEY 263
PS G +P D F++K+L +QAQKK+L KM SK+ IDDTSSEVLDELYR TKE+
Sbjct: 72 PSWAGA-VPGPMDAFSTKSLVLQAQKKLLSKMASKATVAVFIDDTSSEVLDELYRATKEF 130
Query: 264 TQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDF 443
T+++KEA+K++KNL+K +KL +L R Q +ELAL+++F+ + +LAMT VSFHQVDF
Sbjct: 131 TRSRKEAQKVLKNLVKVAVKLGVLLRGGQLGGEELALLQRFRHRARRLAMTAVSFHQVDF 190
Query: 444 TFDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPH 623
TFDR VL+ L+ECR+LLHQ + HLTAKSHGRIN VF H +DCDFLAALY P ++ H
Sbjct: 191 TFDRRVLAAALHECRDLLHQAVGAHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSH 250
Query: 624 LQKLCDGINKMLDEDNI 674
L+++C+G+ +MLD+D+I
Sbjct: 251 LRRICEGLTRMLDDDSI 267
>ref|XP_540310.2| PREDICTED: similar to tumor necrosis factor, alpha-induced protein
8-like 2 [Canis familiaris].
Length = 184
Score = 207 bits (527), Expect = 1e-53
Identities = 99/183 (54%), Positives = 139/183 (75%)
Frame = +3
Query: 126 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 305
F+SK+LA+QA+KK+L KM +S+A ID+TSSEVLDELYRV+KEYT ++ +A+ +IK+L
Sbjct: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQHVIKDL 63
Query: 306 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 485
IK +K+A+L+R+ F ELAL +F++K+ Q AMT +SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAVKVAVLHRSGCFGPGELALAARFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTEC 123
Query: 486 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 665
R++L ++++ HLT KSHGRI +VFDHFSD L ALY P +F H K+CDG+ K+LDE
Sbjct: 124 RDMLLELVEHHLTPKSHGRIRRVFDHFSDAGLLTALYGP--DFAQHRSKICDGLRKLLDE 181
Query: 666 DNI 674
+
Sbjct: 182 GKL 184
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,360,786
Number of extensions: 852400
Number of successful extensions: 2500
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2496
Number of HSP's successfully gapped: 4
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013593
(1054 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123910.1| PREDICTED: tumor necrosis factor alpha-induc... 372 e-103
Alignment gi|XP_003121559.2| PREDICTED: tumor necrosis factor alpha-induc... 256 1e-68
Alignment gi|NP_001191299.1| tumor necrosis factor, alpha-induced protein... 206 1e-53
>ref|XP_003123910.1| PREDICTED: tumor necrosis factor alpha-induced protein 8-like [Sus
scrofa].
Length = 212
Score = 372 bits (956), Expect = e-103
Identities = 187/188 (99%), Positives = 188/188 (100%)
Frame = +3
Query: 111 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 290
+ATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK
Sbjct: 25 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 84
Query: 291 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 470
IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR
Sbjct: 85 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 144
Query: 471 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 650
LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN
Sbjct: 145 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 204
Query: 651 KMLDEDNI 674
KMLDEDNI
Sbjct: 205 KMLDEDNI 212
>ref|XP_003121559.2| PREDICTED: tumor necrosis factor alpha-induced protein 8-like
protein 3-like, partial [Sus scrofa].
Length = 426
Score = 256 bits (654), Expect = 1e-68
Identities = 117/189 (61%), Positives = 164/189 (86%)
Frame = +3
Query: 99 PPLPMATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKK 278
P DVF+SK+LA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+T +KK
Sbjct: 235 PGTAAGPDVFSSKSLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHTHSKK 294
Query: 279 EAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRN 458
EA KI+K+LIK IK+ ILYRNNQF+Q+E+ ++EKF+KK++Q AMT+VSF++V++TFDRN
Sbjct: 295 EAHKIMKDLIKVAIKIGILYRNNQFSQEEVIIVEKFRKKLNQTAMTIVSFYEVEYTFDRN 354
Query: 459 VLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLC 638
VLS+LL+EC++L+H+++QRHLT +SHGRIN VF+HF+D +FL+ LY+ G+ +P+L+K+C
Sbjct: 355 VLSKLLHECKDLVHELVQRHLTPRSHGRINHVFNHFADMEFLSTLYSLDGDCRPNLKKIC 414
Query: 639 DGINKMLDE 665
+GINK+LDE
Sbjct: 415 EGINKLLDE 423
>ref|NP_001191299.1| tumor necrosis factor, alpha-induced protein 8-like 2 [Sus scrofa].
Length = 184
Score = 206 bits (525), Expect = 1e-53
Identities = 100/183 (54%), Positives = 140/183 (76%)
Frame = +3
Query: 126 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 305
F+SK+LA+QA+KK+L KM +S+ ID+TSSEVLDELYRV+KEYT ++ +A+++IK+L
Sbjct: 4 FSSKSLALQAEKKLLSKMAGRSVVHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDL 63
Query: 306 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 485
IK IK+A+L+R+ F+ ELAL +F++K+ Q AMTV+SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAIKVAVLHRSGCFSPSELALATRFRQKLRQGAMTVLSFSEVDFTFEAAVLASLLTEC 123
Query: 486 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 665
R++L +++ +HLT KSHGRI VFDHFSD L ALY P +F L K+CDG+ K+LDE
Sbjct: 124 RDMLLELVAQHLTPKSHGRIRHVFDHFSDLGLLTALYGP--DFTSRLGKICDGLRKLLDE 181
Query: 666 DNI 674
+
Sbjct: 182 GKL 184
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,271,603
Number of extensions: 522227
Number of successful extensions: 1481
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1476
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013593
(1054 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171230.1| tumor necrosis factor alpha-induced protein ... 360 1e-99
Alignment gi|NP_598892.2| tumor necrosis factor alpha-induced protein 8 i... 360 1e-99
Alignment gi|NP_001028707.1| tumor necrosis factor alpha-induced protein ... 246 3e-65
Alignment gi|NP_079842.2| tumor necrosis factor alpha-induced protein 8-l... 229 3e-60
Alignment gi|NP_081482.1| tumor necrosis factor alpha-induced protein 8-l... 206 2e-53
Alignment gi|NP_001171231.1| tumor necrosis factor alpha-induced protein ... 206 2e-53
>ref|NP_001171230.1| tumor necrosis factor alpha-induced protein 8 isoform 2 [Mus
musculus].
Length = 188
Score = 360 bits (924), Expect = 1e-99
Identities = 177/188 (94%), Positives = 186/188 (98%)
Frame = +3
Query: 111 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 290
MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAE+
Sbjct: 1 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAER 60
Query: 291 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 470
+IKNLIKTVIKLA+L+RNNQFNQDELALMEKFKKKVHQLAMTVVSFHQV++TFDRNVLSR
Sbjct: 61 VIKNLIKTVIKLAVLHRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVEYTFDRNVLSR 120
Query: 471 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 650
LLNECRELLH+IIQRHLTAKSHGR+N VFDHFSDCDFLAALYNPFG FKPHLQKLCDGIN
Sbjct: 121 LLNECRELLHEIIQRHLTAKSHGRVNNVFDHFSDCDFLAALYNPFGKFKPHLQKLCDGIN 180
Query: 651 KMLDEDNI 674
KMLDE+NI
Sbjct: 181 KMLDEENI 188
>ref|NP_598892.2| tumor necrosis factor alpha-induced protein 8 isoform 1 [Mus
musculus].
Length = 212
Score = 360 bits (924), Expect = 1e-99
Identities = 177/191 (92%), Positives = 187/191 (97%)
Frame = +3
Query: 102 PLPMATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKE 281
P +ATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKE
Sbjct: 22 PREVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKE 81
Query: 282 AEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNV 461
AE++IKNLIKTVIKLA+L+RNNQFNQDELALMEKFKKKVHQLAMTVVSFHQV++TFDRNV
Sbjct: 82 AERVIKNLIKTVIKLAVLHRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVEYTFDRNV 141
Query: 462 LSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCD 641
LSRLLNECRELLH+IIQRHLTAKSHGR+N VFDHFSDCDFLAALYNPFG FKPHLQKLCD
Sbjct: 142 LSRLLNECRELLHEIIQRHLTAKSHGRVNNVFDHFSDCDFLAALYNPFGKFKPHLQKLCD 201
Query: 642 GINKMLDEDNI 674
GINKMLDE+NI
Sbjct: 202 GINKMLDEENI 212
>ref|NP_001028707.1| tumor necrosis factor alpha-induced protein 8-like protein 3 [Mus
musculus].
Length = 204
Score = 246 bits (627), Expect = 3e-65
Identities = 110/181 (60%), Positives = 157/181 (86%)
Frame = +3
Query: 123 VFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKN 302
VF+SKNLA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VT+ +T NKKEA KI+K+
Sbjct: 21 VFSSKNLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTEIHTHNKKEAHKIMKD 80
Query: 303 LIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNE 482
IK IK+ ILYRN QF+Q+E+ ++EK +KK++Q AMT+VSF++V++TFD NVLS+LL+E
Sbjct: 81 AIKVAIKIGILYRNKQFSQEEVIIVEKLRKKLNQTAMTMVSFYEVEYTFDTNVLSKLLHE 140
Query: 483 CRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLD 662
C++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY P GN +P+L+++C+GINK+LD
Sbjct: 141 CKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYGPHGNCRPNLKRICEGINKLLD 200
Query: 663 E 665
+
Sbjct: 201 D 201
>ref|NP_079842.2| tumor necrosis factor alpha-induced protein 8-like protein 1 [Mus
musculus].
Length = 186
Score = 229 bits (584), Expect = 3e-60
Identities = 106/185 (57%), Positives = 148/185 (80%)
Frame = +3
Query: 120 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 299
D F++K+LA+QAQKK+L KM SK++ +D+TSSEVLDELY+ TKE+T+++KEA++++K
Sbjct: 2 DTFSTKSLALQAQKKVLSKMASKAMVAVFVDNTSSEVLDELYQATKEFTRSRKEAQRVVK 61
Query: 300 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 479
NL+K +KLA+L R +Q + +ELA +++F+ +V LAMT +SFHQVDFTFDR VL+ L
Sbjct: 62 NLVKVAVKLAVLLRADQLDSNELAQLQRFRGRVRSLAMTALSFHQVDFTFDRRVLATGLL 121
Query: 480 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 659
ECR+LLHQ I HLTAKSHGRIN +F HF++ DFLAALY+P ++ HL ++CDG+ +ML
Sbjct: 122 ECRDLLHQAIGPHLTAKSHGRINHIFSHFANGDFLAALYSPAEPYRSHLCRICDGLGRML 181
Query: 660 DEDNI 674
DE I
Sbjct: 182 DEGGI 186
>ref|NP_081482.1| tumor necrosis factor alpha-induced protein 8-like protein 2 [Mus
musculus].
Length = 184
Score = 206 bits (525), Expect = 2e-53
Identities = 100/183 (54%), Positives = 141/183 (77%)
Frame = +3
Query: 126 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 305
F+SK+LA+QA+KK+L KM +S+A ID+TSSEVLDELYRV+KEYT ++ +A+++IK+L
Sbjct: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPKAQRVIKDL 63
Query: 306 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 485
IK +K+A+L+R+ F ELAL +F++K+ Q AMT +SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAVKVAVLHRSGCFGPGELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLVEC 123
Query: 486 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 665
R++L ++++ HLT KSH RI VFDH+SD D LAALY P +F HL K+CDG+ K+LDE
Sbjct: 124 RDILLELVEHHLTPKSHDRIRHVFDHYSDPDLLAALYGP--DFTQHLGKICDGLRKLLDE 181
Query: 666 DNI 674
+
Sbjct: 182 GKL 184
>ref|NP_001171231.1| tumor necrosis factor alpha-induced protein 8 isoform 3 [Mus
musculus].
Length = 136
Score = 206 bits (524), Expect = 2e-53
Identities = 108/133 (81%), Positives = 119/133 (89%), Gaps = 3/133 (2%)
Frame = +3
Query: 111 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 290
MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAE+
Sbjct: 1 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAER 60
Query: 291 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVL-- 464
+IKNLIKTVIKLA+L+RNNQFNQDELALMEKFKKKVHQLAMTVVSFHQ+ L
Sbjct: 61 VIKNLIKTVIKLAVLHRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQIVIDLQELNLRQ 120
Query: 465 -SRLLNECRELLH 500
+R+L + ++ +H
Sbjct: 121 SNRMLRKAKKTVH 133
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,643,425
Number of extensions: 718533
Number of successful extensions: 1984
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1982
Number of HSP's successfully gapped: 6
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013593
(1054 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071122.1| tumor necrosis factor alpha-induced protein ... 365 e-101
Alignment gi|NP_055165.2| tumor necrosis factor alpha-induced protein 8 i... 364 e-101
Alignment gi|NP_997264.2| tumor necrosis factor alpha-induced protein 8-l... 257 1e-68
Alignment gi|NP_689575.2| tumor necrosis factor alpha-induced protein 8-l... 234 8e-62
Alignment gi|NP_001161414.1| tumor necrosis factor alpha-induced protein ... 234 8e-62
Alignment gi|NP_078851.2| tumor necrosis factor alpha-induced protein 8-l... 211 9e-55
>ref|NP_001071122.1| tumor necrosis factor alpha-induced protein 8 isoform b [Homo
sapiens].
Length = 188
Score = 365 bits (938), Expect = e-101
Identities = 181/188 (96%), Positives = 187/188 (99%)
Frame = +3
Query: 111 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 290
MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVT+EYTQNKKEAEK
Sbjct: 1 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTREYTQNKKEAEK 60
Query: 291 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 470
IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD+TFDRNVLSR
Sbjct: 61 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDYTFDRNVLSR 120
Query: 471 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 650
LLNECRE+LHQIIQRHLTAKSHGR+N VFDHFSDC+FLAALYNPFGNFKPHLQKLCDGIN
Sbjct: 121 LLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKPHLQKLCDGIN 180
Query: 651 KMLDEDNI 674
KMLDE+NI
Sbjct: 181 KMLDEENI 188
>ref|NP_055165.2| tumor necrosis factor alpha-induced protein 8 isoform a [Homo
sapiens].
Length = 198
Score = 364 bits (934), Expect = e-101
Identities = 180/188 (95%), Positives = 187/188 (99%)
Frame = +3
Query: 111 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 290
+ATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVT+EYTQNKKEAEK
Sbjct: 11 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTREYTQNKKEAEK 70
Query: 291 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 470
IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD+TFDRNVLSR
Sbjct: 71 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDYTFDRNVLSR 130
Query: 471 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 650
LLNECRE+LHQIIQRHLTAKSHGR+N VFDHFSDC+FLAALYNPFGNFKPHLQKLCDGIN
Sbjct: 131 LLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKPHLQKLCDGIN 190
Query: 651 KMLDEDNI 674
KMLDE+NI
Sbjct: 191 KMLDEENI 198
>ref|NP_997264.2| tumor necrosis factor alpha-induced protein 8-like protein 3 [Homo
sapiens].
Length = 292
Score = 257 bits (656), Expect = 1e-68
Identities = 119/191 (62%), Positives = 166/191 (86%), Gaps = 1/191 (0%)
Frame = +3
Query: 96 GPPLPMA-TDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQN 272
G P+ A DVF+SK+LA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+T N
Sbjct: 99 GEPVTAAGPDVFSSKSLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHTHN 158
Query: 273 KKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFD 452
KKEA KI+K+LIK IK+ ILYRNNQF+Q+EL ++EKF+KK++Q AMT+VSF++V++TFD
Sbjct: 159 KKEAHKIMKDLIKVAIKIGILYRNNQFSQEELVIVEKFRKKLNQTAMTIVSFYEVEYTFD 218
Query: 453 RNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQK 632
RNVLS LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY+ G+ +P+L++
Sbjct: 219 RNVLSNLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKR 278
Query: 633 LCDGINKMLDE 665
+C+GINK+LDE
Sbjct: 279 ICEGINKLLDE 289
>ref|NP_689575.2| tumor necrosis factor alpha-induced protein 8-like protein 1 [Homo
sapiens].
Length = 186
Score = 234 bits (598), Expect = 8e-62
Identities = 108/185 (58%), Positives = 147/185 (79%)
Frame = +3
Query: 120 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 299
D F++K+LA+QAQKK+L KM SK++ L+DDTSSEVLDELYR T+E+T+++KEA+K++K
Sbjct: 2 DTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKMLK 61
Query: 300 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 479
NL+K +KL +L R +Q +ELAL+ +F+ + LAMT VSFHQVDFTFDR VL+ L
Sbjct: 62 NLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGLL 121
Query: 480 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 659
ECR+LLHQ + HLTAKSHGRIN VF H +DCDFLAALY P ++ HL+++C+G+ +ML
Sbjct: 122 ECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRML 181
Query: 660 DEDNI 674
DE ++
Sbjct: 182 DEGSL 186
>ref|NP_001161414.1| tumor necrosis factor alpha-induced protein 8-like protein 1 [Homo
sapiens].
Length = 186
Score = 234 bits (598), Expect = 8e-62
Identities = 108/185 (58%), Positives = 147/185 (79%)
Frame = +3
Query: 120 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 299
D F++K+LA+QAQKK+L KM SK++ L+DDTSSEVLDELYR T+E+T+++KEA+K++K
Sbjct: 2 DTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKMLK 61
Query: 300 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 479
NL+K +KL +L R +Q +ELAL+ +F+ + LAMT VSFHQVDFTFDR VL+ L
Sbjct: 62 NLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGLL 121
Query: 480 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 659
ECR+LLHQ + HLTAKSHGRIN VF H +DCDFLAALY P ++ HL+++C+G+ +ML
Sbjct: 122 ECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRML 181
Query: 660 DEDNI 674
DE ++
Sbjct: 182 DEGSL 186
>ref|NP_078851.2| tumor necrosis factor alpha-induced protein 8-like protein 2 [Homo
sapiens].
Length = 184
Score = 211 bits (537), Expect = 9e-55
Identities = 102/183 (55%), Positives = 140/183 (76%)
Frame = +3
Query: 126 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 305
F+SK+LA+QA+KK+L KM +S+A ID+TSSEVLDELYRV+KEYT ++ +A+++IK+L
Sbjct: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDL 63
Query: 306 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 485
IK IK+A+L+RN F ELAL +F++K+ Q AMT +SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTEC 123
Query: 486 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 665
R++L ++++ HLT KSHGRI VFDHFSD L ALY P +F HL K+CDG+ K+LDE
Sbjct: 124 RDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGP--DFTQHLGKICDGLRKLLDE 181
Query: 666 DNI 674
+
Sbjct: 182 GKL 184
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,789,375
Number of extensions: 846090
Number of successful extensions: 2378
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2376
Number of HSP's successfully gapped: 6
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013593
(1054 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1772 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1772 bits (894), Expect = 0.0
Identities = 929/943 (98%)
Strand = Plus / Plus
Query: 112 tggccacagatgtctttaattccaaaaacctggccgttcaggcacaaaagaagatcttgg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722082 tggccacagatgtctttaattccaaaaacctggccgttcaggcacaaaagaagatcttgg 128722141
Query: 172 gtaagatggtgtccaagtccatcgccaccaccttgattgacgacacgagtagcgaagtgc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722142 gtaagatggtgtccaagtccatcgccaccaccttgattgacgacacgagtagcgaagtgc 128722201
Query: 232 tggatgagctctacagggtgaccaaggagtacacccagaacaagaaggaggcagagaaaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722202 tggatgagctctacagggtgaccaaggagtacacccagaacaagaaggaggcagagaaaa 128722261
Query: 292 tcataaaaaacctcatcaaaacagtcatcaagctggccattctctacaggaataatcaat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722262 tcataaaaaacctcatcaaaacagtcatcaagctggccattctctacaggaataatcaat 128722321
Query: 352 ttaaccaagatgagctagcactgatggagaaatttaagaagaaagtccaccaacttgcta 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722322 ttaaccaagatgagctagcactgatggagaaatttaagaagaaagtccaccaacttgcta 128722381
Query: 412 tgaccgtggtcagttttcatcaggtggatttcacctttgaccggaatgtgctatccaggc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722382 tgaccgtggtcagttttcatcaggtggatttcacctttgaccggaatgtgctatccaggc 128722441
Query: 472 tgctcaatgagtgcagagagctgctccaccagatcatccagcgtcacctcaccgccaagt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722442 tgctcaatgagtgcagagagctgctccaccagatcatccagcgtcacctcaccgccaagt 128722501
Query: 532 cacacggacggattaacaaggtctttgatcatttttcagattgtgatttcttggccgcct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722502 cacacggacggattaacaaggtctttgatcatttttcagattgtgatttcttggccgcct 128722561
Query: 592 tgtataatccctttggaaatttcaaaccacacttacagaaactgtgtgatggtatcaaca 651
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 128722562 tgtataatccctttggaaatttcaaaccgcacttacagaaactgtgtgatggtatcaaca 128722621
Query: 652 aaatgttggatgaagataacatatgagcatgtgagttaggattgtgactgctcatgattt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722622 aaatgttggatgaagataacatatgagcatgtgagttaggattgtgactgctcatgattt 128722681
Query: 712 actggaaggaggaacactgctgatttatgaaggnnnnnnntaatgttttagaggttatgc 771
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 128722682 actggaaggaggaacactgctgatttatgaaggaaaaaaataatgttttagagattatgc 128722741
Query: 772 atatttcagaaagactttgtgtaattcagttgtctgacatcaatgacaatgcttgataag 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722742 atatttcagaaagactttgtgtaattcagttgtctgacatcaatgacaatgcttgataag 128722801
Query: 832 gcttgttctatttgaagaaatgcataatgccaaaaattctggtaaaaagcttcccagaag 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 128722802 gcttgttctatttgaagaaatgcataatgccaaaaattctggtaaaaagcttcccagagg 128722861
Query: 892 ttaatagatcacagaaaaagcgtatggttatataatgccaaactagagttatataaagaa 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722862 ttaatagatcacagaaaaagcgtatggttatataatgccaaactagagttatataaagaa 128722921
Query: 952 aaatagacatgactccaagcccaaagacatctttcgtagggcagttgttgtgttggtagc 1011
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722922 aaatagatatgactccaagcccaaagacatctttcgtagggcagttgttgtgttggtagc 128722981
Query: 1012 acattggctattttctacgtgtacagaattgtgtattttgatt 1054
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 128722982 acattggctatttctaacgtgtacagaattgtgtattttgatt 128723024
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 ctggtcagtacgctggagcccgcgagggttgaagcgaccaggcaactctgcgcagtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128555164 ctggtcagtacgctggagcccgcgagggttgaagcgaccaggcaactctgcgcagtcaaa 128555223
Query: 61 tcgcccagttcgcctcttagcgtcccagcgccaccgggccccctcttccga 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128555224 tcgcccagttcgcctcttagcgtcccagcgccaccgggccccctcttccga 128555274
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,717,116
Number of extensions: 228
Number of successful extensions: 228
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 2
Length of query: 1054
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1033
Effective length of database: 2,808,413,156
Effective search space: 2901090790148
Effective search space used: 2901090790148
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)