Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013594
(1000 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538548.2| PREDICTED: similar to tumor necrosis factor, al... 366 e-101
Alignment gi|XP_544677.2| PREDICTED: similar to tumor necrosis factor, al... 253 2e-67
Alignment gi|XP_542152.1| PREDICTED: similar to tumor necrosis factor, al... 240 1e-63
Alignment gi|XP_540310.2| PREDICTED: similar to tumor necrosis factor, al... 207 1e-53
>ref|XP_538548.2| PREDICTED: similar to tumor necrosis factor, alpha-induced protein
8 [Canis familiaris].
Length = 386
Score = 366 bits (939), Expect = e-101
Identities = 181/188 (96%), Positives = 187/188 (99%)
Frame = +2
Query: 158 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 337
VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK
Sbjct: 199 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 258
Query: 338 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 517
IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQV++TFDRNVLSR
Sbjct: 259 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVEYTFDRNVLSR 318
Query: 518 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 697
LLNECRE+LHQIIQRHLTAKSHGR+N VFDHFSDCDFLAALYNPFGNFKPHLQKLCDG+N
Sbjct: 319 LLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGVN 378
Query: 698 KMLDEDNI 721
KMLDE+NI
Sbjct: 379 KMLDEENI 386
>ref|XP_544677.2| PREDICTED: similar to tumor necrosis factor, alpha-induced protein
8-like 3 [Canis familiaris].
Length = 213
Score = 253 bits (647), Expect = 2e-67
Identities = 114/185 (61%), Positives = 163/185 (88%)
Frame = +2
Query: 158 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 337
V DVF+SKNLA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+T NKKEA K
Sbjct: 26 VGPDVFSSKNLALQAQKKILSKIASKTMANMLIDDTSSEIFDELYKVTKEHTHNKKEAHK 85
Query: 338 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 517
I+K+LIK +K+ ILYR+NQF+Q+E+ ++EK +KK++Q AMT+VSF++V++TFDRNVLS+
Sbjct: 86 IMKDLIKVAVKIGILYRHNQFSQEEVVIVEKLRKKLNQTAMTIVSFYEVEYTFDRNVLSK 145
Query: 518 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 697
LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY+ G+ +P+L+++C+GIN
Sbjct: 146 LLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKRICEGIN 205
Query: 698 KMLDE 712
K+LDE
Sbjct: 206 KLLDE 210
>ref|XP_542152.1| PREDICTED: similar to tumor necrosis factor, alpha-induced protein
8-like 1 [Canis familiaris].
Length = 267
Score = 240 bits (613), Expect = 1e-63
Identities = 109/185 (58%), Positives = 147/185 (79%)
Frame = +2
Query: 167 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 346
D F++K+L +QAQKK+L KM SK+ IDDTSSEVLDELYR TKE+T+++KEA+K++K
Sbjct: 83 DAFSTKSLVLQAQKKLLSKMASKATVAVFIDDTSSEVLDELYRATKEFTRSRKEAQKVLK 142
Query: 347 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 526
NL+K +KL +L R Q +ELAL+++F+ + +LAMT VSFHQVDFTFDR VL+ L+
Sbjct: 143 NLVKVAVKLGVLLRGGQLGGEELALLQRFRHRARRLAMTAVSFHQVDFTFDRRVLAAALH 202
Query: 527 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 706
ECR+LLHQ + HLTAKSHGRIN VF H +DCDFLAALY P ++ HL+++C+G+ +ML
Sbjct: 203 ECRDLLHQAVGAHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLTRML 262
Query: 707 DEDNI 721
D+D+I
Sbjct: 263 DDDSI 267
>ref|XP_540310.2| PREDICTED: similar to tumor necrosis factor, alpha-induced protein
8-like 2 [Canis familiaris].
Length = 184
Score = 207 bits (527), Expect = 1e-53
Identities = 99/183 (54%), Positives = 139/183 (75%)
Frame = +2
Query: 173 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 352
F+SK+LA+QA+KK+L KM +S+A ID+TSSEVLDELYRV+KEYT ++ +A+ +IK+L
Sbjct: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQHVIKDL 63
Query: 353 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 532
IK +K+A+L+R+ F ELAL +F++K+ Q AMT +SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAVKVAVLHRSGCFGPGELALAARFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTEC 123
Query: 533 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 712
R++L ++++ HLT KSHGRI +VFDHFSD L ALY P +F H K+CDG+ K+LDE
Sbjct: 124 RDMLLELVEHHLTPKSHGRIRRVFDHFSDAGLLTALYGP--DFAQHRSKICDGLRKLLDE 181
Query: 713 DNI 721
+
Sbjct: 182 GKL 184
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,557,471
Number of extensions: 807023
Number of successful extensions: 2450
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2446
Number of HSP's successfully gapped: 4
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013594
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013594
(1000 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077180.1| tumor necrosis factor alpha-induced protein ... 380 e-106
Alignment gi|XP_002690972.1| PREDICTED: tumor necrosis factor, alpha-indu... 257 1e-68
Alignment gi|XP_601426.4| PREDICTED: tumor necrosis factor, alpha-induced... 257 1e-68
Alignment gi|NP_001096740.1| tumor necrosis factor alpha-induced protein ... 239 2e-63
Alignment gi|NP_001029561.1| tumor necrosis factor alpha-induced protein ... 206 2e-53
>ref|NP_001077180.1| tumor necrosis factor alpha-induced protein 8 [Bos taurus].
Length = 198
Score = 380 bits (977), Expect = e-106
Identities = 189/198 (95%), Positives = 194/198 (97%)
Frame = +2
Query: 128 MHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKE 307
MH EAEESKEVATDVFNSKNLAVQAQKKILGKM SKSIATTLIDDTSSEVLDELYRVTKE
Sbjct: 1 MHFEAEESKEVATDVFNSKNLAVQAQKKILGKMASKSIATTLIDDTSSEVLDELYRVTKE 60
Query: 308 YTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD 487
YTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD
Sbjct: 61 YTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD 120
Query: 488 FTFDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKP 667
FTFDRNVLS+LLNECRE+LHQIIQRHLT KSHGR+N VFDHFSDCDFLAALYNPFGN+KP
Sbjct: 121 FTFDRNVLSKLLNECREMLHQIIQRHLTTKSHGRVNNVFDHFSDCDFLAALYNPFGNYKP 180
Query: 668 HLQKLCDGINKMLDEDNI 721
HLQKLCDGINKMLDE+NI
Sbjct: 181 HLQKLCDGINKMLDEENI 198
>ref|XP_002690972.1| PREDICTED: tumor necrosis factor, alpha-induced protein 8-like
3-like [Bos taurus].
Length = 204
Score = 257 bits (657), Expect = 1e-68
Identities = 117/193 (60%), Positives = 164/193 (84%)
Frame = +2
Query: 134 SEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYT 313
SE E DVF+SKNLA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+
Sbjct: 9 SEGEPGTAAGPDVFSSKNLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHI 68
Query: 314 QNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFT 493
NKKEA KI+K+LIK IK+ ILYRNNQF+ +E+ ++EKF+KK++Q AMT+VSF++V++T
Sbjct: 69 HNKKEAHKIMKDLIKVAIKIGILYRNNQFSPEEVVIVEKFRKKLNQTAMTIVSFYEVEYT 128
Query: 494 FDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHL 673
FDRNVLS+LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY+ G+ +P+L
Sbjct: 129 FDRNVLSKLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNL 188
Query: 674 QKLCDGINKMLDE 712
+K+C+GINK++DE
Sbjct: 189 KKICEGINKLIDE 201
>ref|XP_601426.4| PREDICTED: tumor necrosis factor, alpha-induced protein 8-like
3-like [Bos taurus].
Length = 204
Score = 257 bits (657), Expect = 1e-68
Identities = 117/193 (60%), Positives = 164/193 (84%)
Frame = +2
Query: 134 SEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYT 313
SE E DVF+SKNLA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+
Sbjct: 9 SEGEPGTAAGPDVFSSKNLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHI 68
Query: 314 QNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFT 493
NKKEA KI+K+LIK IK+ ILYRNNQF+ +E+ ++EKF+KK++Q AMT+VSF++V++T
Sbjct: 69 HNKKEAHKIMKDLIKVAIKIGILYRNNQFSPEEVVIVEKFRKKLNQTAMTIVSFYEVEYT 128
Query: 494 FDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHL 673
FDRNVLS+LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY+ G+ +P+L
Sbjct: 129 FDRNVLSKLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNL 188
Query: 674 QKLCDGINKMLDE 712
+K+C+GINK++DE
Sbjct: 189 KKICEGINKLIDE 201
>ref|NP_001096740.1| tumor necrosis factor alpha-induced protein 8-like protein 1 [Bos
taurus].
Length = 186
Score = 239 bits (611), Expect = 2e-63
Identities = 110/185 (59%), Positives = 149/185 (80%)
Frame = +2
Query: 167 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 346
D F++K+LA+QAQKK+L KM S+++A+ IDDTSSEVLDELYR TKE+T+++KEA+K++K
Sbjct: 2 DTFSTKSLALQAQKKLLSKMASRAVASAFIDDTSSEVLDELYRATKEFTRSRKEAQKLVK 61
Query: 347 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 526
NL+K +KL +L R Q +ELA +++ +++ +LAMT VSFHQVDFTFDR VL+ L
Sbjct: 62 NLVKVAVKLGVLLRAGQLGAEELARLQRLRQQARRLAMTAVSFHQVDFTFDRRVLATTLL 121
Query: 527 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 706
ECR+LLHQ HLTAKSHGRIN VF H +DCDFLAALY+P ++ HL+++CDG+ +ML
Sbjct: 122 ECRDLLHQAAGAHLTAKSHGRINHVFGHLADCDFLAALYSPAEPYRSHLRRICDGLTRML 181
Query: 707 DEDNI 721
DED+I
Sbjct: 182 DEDSI 186
>ref|NP_001029561.1| tumor necrosis factor alpha-induced protein 8-like protein 2 [Bos
taurus].
Length = 184
Score = 206 bits (525), Expect = 2e-53
Identities = 98/183 (53%), Positives = 140/183 (76%)
Frame = +2
Query: 173 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 352
F+SK+L +QA+KK+L KM +S+A D+TSSEVLDELYRV+KEYT+++ +A+++IK+L
Sbjct: 4 FSSKSLVLQAEKKLLSKMAGRSVAHLFADETSSEVLDELYRVSKEYTRSRPQAQRVIKDL 63
Query: 353 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 532
IK +K+A+L+R+ FN ELAL +F++K+ Q AMT +SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAVKVAVLHRSGCFNPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLASLLTEC 123
Query: 533 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 712
R++L ++++RHLT KSHGRI VFDHFSD L ALY P ++ HL K+C G+ K+LDE
Sbjct: 124 RDVLLELVERHLTPKSHGRIRHVFDHFSDAGLLTALYGP--DYTQHLGKICGGLRKLLDE 181
Query: 713 DNI 721
+
Sbjct: 182 GKL 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,998,998
Number of extensions: 778505
Number of successful extensions: 2192
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2189
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013594
(1000 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123910.1| PREDICTED: tumor necrosis factor alpha-induc... 417 e-117
Alignment gi|XP_003121559.2| PREDICTED: tumor necrosis factor alpha-induc... 259 1e-69
Alignment gi|NP_001191299.1| tumor necrosis factor, alpha-induced protein... 206 1e-53
>ref|XP_003123910.1| PREDICTED: tumor necrosis factor alpha-induced protein 8-like [Sus
scrofa].
Length = 212
Score = 417 bits (1072), Expect = e-117
Identities = 211/212 (99%), Positives = 212/212 (100%)
Frame = +2
Query: 86 MSAVVAPAAAHPDTMHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDT 265
MSAVVAPAAAHPDTM+SEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDT
Sbjct: 1 MSAVVAPAAAHPDTMNSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDT 60
Query: 266 SSEVLDELYRVTKEYTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKV 445
SSEVLDELYRVTKEYTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKV
Sbjct: 61 SSEVLDELYRVTKEYTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKV 120
Query: 446 HQLAMTVVSFHQVDFTFDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCD 625
HQLAMTVVSFHQVDFTFDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCD
Sbjct: 121 HQLAMTVVSFHQVDFTFDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCD 180
Query: 626 FLAALYNPFGNFKPHLQKLCDGINKMLDEDNI 721
FLAALYNPFGNFKPHLQKLCDGINKMLDEDNI
Sbjct: 181 FLAALYNPFGNFKPHLQKLCDGINKMLDEDNI 212
>ref|XP_003121559.2| PREDICTED: tumor necrosis factor alpha-induced protein 8-like
protein 3-like, partial [Sus scrofa].
Length = 426
Score = 259 bits (663), Expect = 1e-69
Identities = 119/193 (61%), Positives = 166/193 (86%)
Frame = +2
Query: 134 SEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYT 313
SE E DVF+SK+LA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VTKE+T
Sbjct: 231 SEGEPGTAAGPDVFSSKSLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHT 290
Query: 314 QNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFT 493
+KKEA KI+K+LIK IK+ ILYRNNQF+Q+E+ ++EKF+KK++Q AMT+VSF++V++T
Sbjct: 291 HSKKEAHKIMKDLIKVAIKIGILYRNNQFSQEEVIIVEKFRKKLNQTAMTIVSFYEVEYT 350
Query: 494 FDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHL 673
FDRNVLS+LL+EC++L+H+++QRHLT +SHGRIN VF+HF+D +FL+ LY+ G+ +P+L
Sbjct: 351 FDRNVLSKLLHECKDLVHELVQRHLTPRSHGRINHVFNHFADMEFLSTLYSLDGDCRPNL 410
Query: 674 QKLCDGINKMLDE 712
+K+C+GINK+LDE
Sbjct: 411 KKICEGINKLLDE 423
>ref|NP_001191299.1| tumor necrosis factor, alpha-induced protein 8-like 2 [Sus scrofa].
Length = 184
Score = 206 bits (525), Expect = 1e-53
Identities = 100/183 (54%), Positives = 140/183 (76%)
Frame = +2
Query: 173 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 352
F+SK+LA+QA+KK+L KM +S+ ID+TSSEVLDELYRV+KEYT ++ +A+++IK+L
Sbjct: 4 FSSKSLALQAEKKLLSKMAGRSVVHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDL 63
Query: 353 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 532
IK IK+A+L+R+ F+ ELAL +F++K+ Q AMTV+SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAIKVAVLHRSGCFSPSELALATRFRQKLRQGAMTVLSFSEVDFTFEAAVLASLLTEC 123
Query: 533 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 712
R++L +++ +HLT KSHGRI VFDHFSD L ALY P +F L K+CDG+ K+LDE
Sbjct: 124 RDMLLELVAQHLTPKSHGRIRHVFDHFSDLGLLTALYGP--DFTSRLGKICDGLRKLLDE 181
Query: 713 DNI 721
+
Sbjct: 182 GKL 184
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,149,060
Number of extensions: 494966
Number of successful extensions: 1400
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1395
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013594
(1000 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598892.2| tumor necrosis factor alpha-induced protein 8 i... 391 e-109
Alignment gi|NP_001171230.1| tumor necrosis factor alpha-induced protein ... 358 3e-99
Alignment gi|NP_001028707.1| tumor necrosis factor alpha-induced protein ... 249 2e-66
Alignment gi|NP_079842.2| tumor necrosis factor alpha-induced protein 8-l... 229 3e-60
Alignment gi|NP_081482.1| tumor necrosis factor alpha-induced protein 8-l... 206 2e-53
Alignment gi|NP_001171231.1| tumor necrosis factor alpha-induced protein ... 204 7e-53
>ref|NP_598892.2| tumor necrosis factor alpha-induced protein 8 isoform 1 [Mus
musculus].
Length = 212
Score = 391 bits (1004), Expect = e-109
Identities = 193/212 (91%), Positives = 204/212 (96%)
Frame = +2
Query: 86 MSAVVAPAAAHPDTMHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDT 265
MS VAP A HPD+M SEAEE +EVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDT
Sbjct: 1 MSVAVAPVAVHPDSMLSEAEEPREVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDT 60
Query: 266 SSEVLDELYRVTKEYTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKV 445
SSEVLDELYRVTKEYTQNKKEAE++IKNLIKTVIKLA+L+RNNQFNQDELALMEKFKKKV
Sbjct: 61 SSEVLDELYRVTKEYTQNKKEAERVIKNLIKTVIKLAVLHRNNQFNQDELALMEKFKKKV 120
Query: 446 HQLAMTVVSFHQVDFTFDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCD 625
HQLAMTVVSFHQV++TFDRNVLSRLLNECRELLH+IIQRHLTAKSHGR+N VFDHFSDCD
Sbjct: 121 HQLAMTVVSFHQVEYTFDRNVLSRLLNECRELLHEIIQRHLTAKSHGRVNNVFDHFSDCD 180
Query: 626 FLAALYNPFGNFKPHLQKLCDGINKMLDEDNI 721
FLAALYNPFG FKPHLQKLCDGINKMLDE+NI
Sbjct: 181 FLAALYNPFGKFKPHLQKLCDGINKMLDEENI 212
>ref|NP_001171230.1| tumor necrosis factor alpha-induced protein 8 isoform 2 [Mus
musculus].
Length = 188
Score = 358 bits (920), Expect = 3e-99
Identities = 176/188 (93%), Positives = 186/188 (98%)
Frame = +2
Query: 158 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 337
+ATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAE+
Sbjct: 1 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAER 60
Query: 338 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 517
+IKNLIKTVIKLA+L+RNNQFNQDELALMEKFKKKVHQLAMTVVSFHQV++TFDRNVLSR
Sbjct: 61 VIKNLIKTVIKLAVLHRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVEYTFDRNVLSR 120
Query: 518 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 697
LLNECRELLH+IIQRHLTAKSHGR+N VFDHFSDCDFLAALYNPFG FKPHLQKLCDGIN
Sbjct: 121 LLNECRELLHEIIQRHLTAKSHGRVNNVFDHFSDCDFLAALYNPFGKFKPHLQKLCDGIN 180
Query: 698 KMLDEDNI 721
KMLDE+NI
Sbjct: 181 KMLDEENI 188
>ref|NP_001028707.1| tumor necrosis factor alpha-induced protein 8-like protein 3 [Mus
musculus].
Length = 204
Score = 249 bits (636), Expect = 2e-66
Identities = 113/193 (58%), Positives = 160/193 (82%)
Frame = +2
Query: 134 SEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYT 313
SE E VF+SKNLA+QAQKKIL K+ SK++A LIDDTSSE+ DELY+VT+ +T
Sbjct: 9 SEGEPGTAAGPHVFSSKNLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTEIHT 68
Query: 314 QNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFT 493
NKKEA KI+K+ IK IK+ ILYRN QF+Q+E+ ++EK +KK++Q AMT+VSF++V++T
Sbjct: 69 HNKKEAHKIMKDAIKVAIKIGILYRNKQFSQEEVIIVEKLRKKLNQTAMTMVSFYEVEYT 128
Query: 494 FDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHL 673
FD NVLS+LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+ LY P GN +P+L
Sbjct: 129 FDTNVLSKLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYGPHGNCRPNL 188
Query: 674 QKLCDGINKMLDE 712
+++C+GINK+LD+
Sbjct: 189 KRICEGINKLLDD 201
>ref|NP_079842.2| tumor necrosis factor alpha-induced protein 8-like protein 1 [Mus
musculus].
Length = 186
Score = 229 bits (584), Expect = 3e-60
Identities = 106/185 (57%), Positives = 148/185 (80%)
Frame = +2
Query: 167 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 346
D F++K+LA+QAQKK+L KM SK++ +D+TSSEVLDELY+ TKE+T+++KEA++++K
Sbjct: 2 DTFSTKSLALQAQKKVLSKMASKAMVAVFVDNTSSEVLDELYQATKEFTRSRKEAQRVVK 61
Query: 347 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 526
NL+K +KLA+L R +Q + +ELA +++F+ +V LAMT +SFHQVDFTFDR VL+ L
Sbjct: 62 NLVKVAVKLAVLLRADQLDSNELAQLQRFRGRVRSLAMTALSFHQVDFTFDRRVLATGLL 121
Query: 527 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 706
ECR+LLHQ I HLTAKSHGRIN +F HF++ DFLAALY+P ++ HL ++CDG+ +ML
Sbjct: 122 ECRDLLHQAIGPHLTAKSHGRINHIFSHFANGDFLAALYSPAEPYRSHLCRICDGLGRML 181
Query: 707 DEDNI 721
DE I
Sbjct: 182 DEGGI 186
>ref|NP_081482.1| tumor necrosis factor alpha-induced protein 8-like protein 2 [Mus
musculus].
Length = 184
Score = 206 bits (525), Expect = 2e-53
Identities = 100/183 (54%), Positives = 141/183 (77%)
Frame = +2
Query: 173 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 352
F+SK+LA+QA+KK+L KM +S+A ID+TSSEVLDELYRV+KEYT ++ +A+++IK+L
Sbjct: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPKAQRVIKDL 63
Query: 353 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 532
IK +K+A+L+R+ F ELAL +F++K+ Q AMT +SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAVKVAVLHRSGCFGPGELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLVEC 123
Query: 533 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 712
R++L ++++ HLT KSH RI VFDH+SD D LAALY P +F HL K+CDG+ K+LDE
Sbjct: 124 RDILLELVEHHLTPKSHDRIRHVFDHYSDPDLLAALYGP--DFTQHLGKICDGLRKLLDE 181
Query: 713 DNI 721
+
Sbjct: 182 GKL 184
>ref|NP_001171231.1| tumor necrosis factor alpha-induced protein 8 isoform 3 [Mus
musculus].
Length = 136
Score = 204 bits (520), Expect = 7e-53
Identities = 107/133 (80%), Positives = 119/133 (89%), Gaps = 3/133 (2%)
Frame = +2
Query: 158 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 337
+ATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAE+
Sbjct: 1 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAER 60
Query: 338 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVL-- 511
+IKNLIKTVIKLA+L+RNNQFNQDELALMEKFKKKVHQLAMTVVSFHQ+ L
Sbjct: 61 VIKNLIKTVIKLAVLHRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQIVIDLQELNLRQ 120
Query: 512 -SRLLNECRELLH 547
+R+L + ++ +H
Sbjct: 121 SNRMLRKAKKTVH 133
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,169,867
Number of extensions: 685495
Number of successful extensions: 1939
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1937
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013594
(1000 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055165.2| tumor necrosis factor alpha-induced protein 8 i... 384 e-107
Alignment gi|NP_001071122.1| tumor necrosis factor alpha-induced protein ... 364 e-101
Alignment gi|NP_997264.2| tumor necrosis factor alpha-induced protein 8-l... 261 7e-70
Alignment gi|NP_689575.2| tumor necrosis factor alpha-induced protein 8-l... 234 7e-62
Alignment gi|NP_001161414.1| tumor necrosis factor alpha-induced protein ... 234 7e-62
Alignment gi|NP_078851.2| tumor necrosis factor alpha-induced protein 8-l... 211 8e-55
>ref|NP_055165.2| tumor necrosis factor alpha-induced protein 8 isoform a [Homo
sapiens].
Length = 198
Score = 384 bits (987), Expect = e-107
Identities = 191/198 (96%), Positives = 197/198 (99%)
Frame = +2
Query: 128 MHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKE 307
MHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVT+E
Sbjct: 1 MHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTRE 60
Query: 308 YTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD 487
YTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD
Sbjct: 61 YTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD 120
Query: 488 FTFDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKP 667
+TFDRNVLSRLLNECRE+LHQIIQRHLTAKSHGR+N VFDHFSDC+FLAALYNPFGNFKP
Sbjct: 121 YTFDRNVLSRLLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKP 180
Query: 668 HLQKLCDGINKMLDEDNI 721
HLQKLCDGINKMLDE+NI
Sbjct: 181 HLQKLCDGINKMLDEENI 198
>ref|NP_001071122.1| tumor necrosis factor alpha-induced protein 8 isoform b [Homo
sapiens].
Length = 188
Score = 364 bits (934), Expect = e-101
Identities = 180/188 (95%), Positives = 187/188 (99%)
Frame = +2
Query: 158 VATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEK 337
+ATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVT+EYTQNKKEAEK
Sbjct: 1 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTREYTQNKKEAEK 60
Query: 338 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSR 517
IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD+TFDRNVLSR
Sbjct: 61 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDYTFDRNVLSR 120
Query: 518 LLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGIN 697
LLNECRE+LHQIIQRHLTAKSHGR+N VFDHFSDC+FLAALYNPFGNFKPHLQKLCDGIN
Sbjct: 121 LLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKPHLQKLCDGIN 180
Query: 698 KMLDEDNI 721
KMLDE+NI
Sbjct: 181 KMLDEENI 188
>ref|NP_997264.2| tumor necrosis factor alpha-induced protein 8-like protein 3 [Homo
sapiens].
Length = 292
Score = 261 bits (667), Expect = 7e-70
Identities = 123/206 (59%), Positives = 171/206 (83%), Gaps = 3/206 (1%)
Frame = +2
Query: 104 PAAAHPDTMHSEAEESKEVAT---DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSE 274
PAA D+ E E + V DVF+SK+LA+QAQKKIL K+ SK++A LIDDTSSE
Sbjct: 84 PAARSMDSDSGEQSEGEPVTAAGPDVFSSKSLALQAQKKILSKIASKTVANMLIDDTSSE 143
Query: 275 VLDELYRVTKEYTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQL 454
+ DELY+VTKE+T NKKEA KI+K+LIK IK+ ILYRNNQF+Q+EL ++EKF+KK++Q
Sbjct: 144 IFDELYKVTKEHTHNKKEAHKIMKDLIKVAIKIGILYRNNQFSQEELVIVEKFRKKLNQT 203
Query: 455 AMTVVSFHQVDFTFDRNVLSRLLNECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLA 634
AMT+VSF++V++TFDRNVLS LL+EC++L+H+++QRHLT ++HGRIN VF+HF+D +FL+
Sbjct: 204 AMTIVSFYEVEYTFDRNVLSNLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLS 263
Query: 635 ALYNPFGNFKPHLQKLCDGINKMLDE 712
LY+ G+ +P+L+++C+GINK+LDE
Sbjct: 264 TLYSLDGDCRPNLKRICEGINKLLDE 289
>ref|NP_689575.2| tumor necrosis factor alpha-induced protein 8-like protein 1 [Homo
sapiens].
Length = 186
Score = 234 bits (598), Expect = 7e-62
Identities = 108/185 (58%), Positives = 147/185 (79%)
Frame = +2
Query: 167 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 346
D F++K+LA+QAQKK+L KM SK++ L+DDTSSEVLDELYR T+E+T+++KEA+K++K
Sbjct: 2 DTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKMLK 61
Query: 347 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 526
NL+K +KL +L R +Q +ELAL+ +F+ + LAMT VSFHQVDFTFDR VL+ L
Sbjct: 62 NLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGLL 121
Query: 527 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 706
ECR+LLHQ + HLTAKSHGRIN VF H +DCDFLAALY P ++ HL+++C+G+ +ML
Sbjct: 122 ECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRML 181
Query: 707 DEDNI 721
DE ++
Sbjct: 182 DEGSL 186
>ref|NP_001161414.1| tumor necrosis factor alpha-induced protein 8-like protein 1 [Homo
sapiens].
Length = 186
Score = 234 bits (598), Expect = 7e-62
Identities = 108/185 (58%), Positives = 147/185 (79%)
Frame = +2
Query: 167 DVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIK 346
D F++K+LA+QAQKK+L KM SK++ L+DDTSSEVLDELYR T+E+T+++KEA+K++K
Sbjct: 2 DTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKMLK 61
Query: 347 NLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLN 526
NL+K +KL +L R +Q +ELAL+ +F+ + LAMT VSFHQVDFTFDR VL+ L
Sbjct: 62 NLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGLL 121
Query: 527 ECRELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKML 706
ECR+LLHQ + HLTAKSHGRIN VF H +DCDFLAALY P ++ HL+++C+G+ +ML
Sbjct: 122 ECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRML 181
Query: 707 DEDNI 721
DE ++
Sbjct: 182 DEGSL 186
>ref|NP_078851.2| tumor necrosis factor alpha-induced protein 8-like protein 2 [Homo
sapiens].
Length = 184
Score = 211 bits (537), Expect = 8e-55
Identities = 102/183 (55%), Positives = 140/183 (76%)
Frame = +2
Query: 173 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTKEYTQNKKEAEKIIKNL 352
F+SK+LA+QA+KK+L KM +S+A ID+TSSEVLDELYRV+KEYT ++ +A+++IK+L
Sbjct: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDL 63
Query: 353 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDFTFDRNVLSRLLNEC 532
IK IK+A+L+RN F ELAL +F++K+ Q AMT +SF +VDFTF+ VL+ LL EC
Sbjct: 64 IKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTEC 123
Query: 533 RELLHQIIQRHLTAKSHGRINKVFDHFSDCDFLAALYNPFGNFKPHLQKLCDGINKMLDE 712
R++L ++++ HLT KSHGRI VFDHFSD L ALY P +F HL K+CDG+ K+LDE
Sbjct: 124 RDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGP--DFTQHLGKICDGLRKLLDE 181
Query: 713 DNI 721
+
Sbjct: 182 GKL 184
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,040,828
Number of extensions: 805117
Number of successful extensions: 2252
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2249
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013594
(1000 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1616 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1616 bits (815), Expect = 0.0
Identities = 835/844 (98%)
Strand = Plus / Plus
Query: 157 agtggccacagatgtctttaattccaaaaacctggccgttcaggcacaaaagaagatctt 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722080 agtggccacagatgtctttaattccaaaaacctggccgttcaggcacaaaagaagatctt 128722139
Query: 217 gggtaagatggtgtccaagtccatcgccaccaccttgattgacgacacgagtagcgaagt 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722140 gggtaagatggtgtccaagtccatcgccaccaccttgattgacgacacgagtagcgaagt 128722199
Query: 277 gctggatgagctctacagggtgaccaaggagtacacccagaacaagaaggaggcagagaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722200 gctggatgagctctacagggtgaccaaggagtacacccagaacaagaaggaggcagagaa 128722259
Query: 337 aatcataaaaaacctcatcaaaacagtcatcaagctggccattctctacaggaataatca 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722260 aatcataaaaaacctcatcaaaacagtcatcaagctggccattctctacaggaataatca 128722319
Query: 397 atttaaccaagatgagctagcactgatggagaaatttaagaagaaagtccaccaacttgc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722320 atttaaccaagatgagctagcactgatggagaaatttaagaagaaagtccaccaacttgc 128722379
Query: 457 tatgaccgtggtcagttttcatcaggtggatttcacctttgaccggaatgtgctatccag 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722380 tatgaccgtggtcagttttcatcaggtggatttcacctttgaccggaatgtgctatccag 128722439
Query: 517 gctgctcaatgagtgcagagagctgctccaccagatcatccagcgtcacctcaccgccaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722440 gctgctcaatgagtgcagagagctgctccaccagatcatccagcgtcacctcaccgccaa 128722499
Query: 577 gtcacacggacggattaacaaggtctttgatcatttttcagattgtgatttcttggccgc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722500 gtcacacggacggattaacaaggtctttgatcatttttcagattgtgatttcttggccgc 128722559
Query: 637 cttgtataatccctttggaaatttcaaaccgcacttacagaaactgtgtgatggtatcaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722560 cttgtataatccctttggaaatttcaaaccgcacttacagaaactgtgtgatggtatcaa 128722619
Query: 697 caaaatgttggatgaagataacatatgagcatgtgagttaggattgtgactgctcatgat 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722620 caaaatgttggatgaagataacatatgagcatgtgagttaggattgtgactgctcatgat 128722679
Query: 757 ttactggaaggaggaacactgctgatttatgaaggnnnnnnntaatgttttagagattat 816
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 128722680 ttactggaaggaggaacactgctgatttatgaaggaaaaaaataatgttttagagattat 128722739
Query: 817 gcatatttcagaaagactttgtgtaattcagttgtctgacatcaatgacaatgcttgata 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722740 gcatatttcagaaagactttgtgtaattcagttgtctgacatcaatgacaatgcttgata 128722799
Query: 877 aggcttgttctatttgaagaaatgcataatgccaaaaattctggtaaaaagcttcccaga 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128722800 aggcttgttctatttgaagaaatgcataatgccaaaaattctggtaaaaagcttcccaga 128722859
Query: 937 ggttaatagatcacagaaaaaccgtatggttatataatgcccaactagagttatataaag 996
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 128722860 ggttaatagatcacagaaaaagcgtatggttatataatgccaaactagagttatataaag 128722919
Query: 997 aaaa 1000
||||
Sbjct: 128722920 aaaa 128722923
Score = 305 bits (154), Expect = 2e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 1 tttgattttagtggctttccttccttttattttctgtcgtgtgcgggttttggcgtccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128681428 tttgattttagtggctttccttccttttattttctgtcgtgtgcgggttttggcgtccaa 128681487
Query: 61 gcacatttgcagctcgtccgagtccatgtcagcggtggtcgcccctgcagctgctcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128681488 gcacatttgcagctcgtccgagtccatgtcagcggtggtcgcccctgcagctgctcaccc 128681547
Query: 121 tgacaccatgcactccgaagcagaagaatctaaggaag 158
|||||||||| |||||||||||||||||||||||||||
Sbjct: 128681548 tgacaccatgaactccgaagcagaagaatctaaggaag 128681585
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,056,699
Number of extensions: 275
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 2
Length of query: 1000
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 979
Effective length of database: 2,808,413,156
Effective search space: 2749436479724
Effective search space used: 2749436479724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)