Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013599
(1105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533865.2| PREDICTED: similar to splicing factor 4 isoform... 570 e-163
Alignment gi|XP_864993.1| PREDICTED: similar to splicing factor 4 isoform... 536 e-152
Alignment gi|XP_864957.1| PREDICTED: similar to splicing factor 4 isoform... 390 e-109
Alignment gi|XP_865871.1| PREDICTED: similar to Splicing factor 3 subunit... 69 1e-11
Alignment gi|XP_852516.1| PREDICTED: similar to Splicing factor 3 subunit... 68 1e-11
Alignment gi|XP_865183.1| PREDICTED: similar to splicing factor, arginine... 67 4e-11
Alignment gi|XP_852169.1| PREDICTED: similar to splicing factor, arginine... 67 4e-11
Alignment gi|XP_865142.1| PREDICTED: similar to splicing factor, arginine... 67 4e-11
Alignment gi|XP_865887.1| PREDICTED: similar to Splicing factor 3 subunit... 66 7e-11
Alignment gi|XP_865843.1| PREDICTED: similar to Splicing factor 3 subunit... 65 9e-11
>ref|XP_533865.2| PREDICTED: similar to splicing factor 4 isoform a isoform 1 [Canis
familiaris].
Length = 628
Score = 570 bits (1470), Expect = e-163
Identities = 296/359 (82%), Positives = 301/359 (83%), Gaps = 1/359 (0%)
Frame = +1
Query: 28 MDNRDVAGKANRWFGVAPAKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVA-SPQ 204
MDNRDVAGKANRWFGVAP KSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQV SPQ
Sbjct: 1 MDNRDVAGKANRWFGVAPPKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVVISPQ 60
Query: 205 PPNPGEIANAHNSNVSNKFANDGSXXXXXXXXXXAQTSTDXXXXXXXXXXRVLPRPGKRP 384
PP+PGEIANAHNS+VSNKFANDGS AQTSTD RVLPR GKRP
Sbjct: 61 PPHPGEIANAHNSSVSNKFANDGSFLQQFLKLQKAQTSTDAPPSTPSAPTRVLPRTGKRP 120
Query: 385 PLISSLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKVSPPEGAETRKVIE 564
PLISS PGQVKNYVHAKQLPVASRPSVFQSP QWLEIKVSPPEGAETRKVIE
Sbjct: 121 PLISSPPGQVKNYVHAKQLPVASRPSVFQSPDEDEEEDYEQWLEIKVSPPEGAETRKVIE 180
Query: 565 KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQTASQ 744
KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQ +SQ
Sbjct: 181 KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQGSSQ 240
Query: 745 KVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKL 924
K EDEE KNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKL
Sbjct: 241 K----EDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKL 296
Query: 925 EEFRKAKAGPTGPPMAPDLGLKHTSPPETPLGSLPTGTGCPISSAPFAHINPSSAAPGK 1101
EEFRKAKAGPTG MAPDL LK SPPETP GSLP CP SSAP + P+ PGK
Sbjct: 297 EEFRKAKAGPTGTLMAPDLSLKRKSPPETPSGSLPPAAACPASSAPSPAVTPAPTIPGK 355
>ref|XP_864993.1| PREDICTED: similar to splicing factor 4 isoform a isoform 3 [Canis
familiaris].
Length = 607
Score = 536 bits (1382), Expect = e-152
Identities = 282/359 (78%), Positives = 287/359 (79%), Gaps = 1/359 (0%)
Frame = +1
Query: 28 MDNRDVAGKANRWFGVAPAKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVA-SPQ 204
MDNRDVAGKANRWFGVAP KSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQV SPQ
Sbjct: 1 MDNRDVAGKANRWFGVAPPKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVVISPQ 60
Query: 205 PPNPGEIANAHNSNVSNKFANDGSXXXXXXXXXXAQTSTDXXXXXXXXXXRVLPRPGKRP 384
PP+PGEIANAHNS+VSNKFANDGS AQTSTD RVLPR GKRP
Sbjct: 61 PPHPGEIANAHNSSVSNKFANDGSFLQQFLKLQKAQTSTDAPPSTPSAPTRVLPRTGKRP 120
Query: 385 PLISSLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKVSPPEGAETRKVIE 564
PLISS PGQVKNYVHAKQLPVASRPSVFQSP QWLEIKVSPPEGAETRKVIE
Sbjct: 121 PLISSPPGQVKNYVHAKQLPVASRPSVFQSPDEDEEEDYEQWLEIKVSPPEGAETRKVIE 180
Query: 565 KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQTASQ 744
KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQ +SQ
Sbjct: 181 KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQGSSQ 240
Query: 745 KVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKL 924
KVSPPEDEE KNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKL
Sbjct: 241 KVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKL 300
Query: 925 EEFRKAKAGPTGPPMAPDLGLKHTSPPETPLGSLPTGTGCPISSAPFAHINPSSAAPGK 1101
EEFRKAKAGPT CP SSAP + P+ PGK
Sbjct: 301 EEFRKAKAGPTA-------------------------AACPASSAPSPAVTPAPTIPGK 334
>ref|XP_864957.1| PREDICTED: similar to splicing factor 4 isoform a isoform 2 [Canis
familiaris].
Length = 250
Score = 390 bits (1003), Expect = e-109
Identities = 203/241 (84%), Positives = 206/241 (85%), Gaps = 1/241 (0%)
Frame = +1
Query: 28 MDNRDVAGKANRWFGVAPAKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVA-SPQ 204
MDNRDVAGKANRWFGVAP KSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQV SPQ
Sbjct: 1 MDNRDVAGKANRWFGVAPPKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVVISPQ 60
Query: 205 PPNPGEIANAHNSNVSNKFANDGSXXXXXXXXXXAQTSTDXXXXXXXXXXRVLPRPGKRP 384
PP+PGEIANAHNS+VSNKFANDGS AQTSTD RVLPR GKRP
Sbjct: 61 PPHPGEIANAHNSSVSNKFANDGSFLQQFLKLQKAQTSTDAPPSTPSAPTRVLPRTGKRP 120
Query: 385 PLISSLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKVSPPEGAETRKVIE 564
PLISS PGQVKNYVHAKQLPVASRPSVFQSP QWLEIKVSPPEGAETRKVIE
Sbjct: 121 PLISSPPGQVKNYVHAKQLPVASRPSVFQSPDEDEEEDYEQWLEIKVSPPEGAETRKVIE 180
Query: 565 KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQTASQ 744
KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQ +SQ
Sbjct: 181 KLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQGSSQ 240
Query: 745 K 747
K
Sbjct: 241 K 241
Score = 83.6 bits (205), Expect = 3e-16
Identities = 36/65 (55%), Positives = 52/65 (80%)
Frame = +1
Query: 745 KVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKL 924
KVSPPE E + + EKLARF+A+GGPE+E +A++N ++N AFSFL++ NS+ + YYR+K+
Sbjct: 166 KVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKV 225
Query: 925 EEFRK 939
E RK
Sbjct: 226 AEIRK 230
>ref|XP_865871.1| PREDICTED: similar to Splicing factor 3 subunit 1 (Spliceosome
associated protein 114) (SAP 114) (SF3a120) isoform 5
[Canis familiaris].
Length = 776
Score = 68.6 bits (166), Expect = 1e-11
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Frame = +1
Query: 523 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
+ PP E R +++K A FVA GPE E +N +NP F+FL + N YYR KV+
Sbjct: 43 IYPPP--EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL-NPNDPYHAYYRHKVS 99
Query: 703 EIRK------------EAQKLQ-TASQKVSPPEDEEVK----------NLAEKLARFIAD 813
E ++ +AQ +Q T K PPE E + ++ + A+F+A
Sbjct: 100 EFKEGKAQEPSLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVAR 159
Query: 814 GGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKAKAGPTG 960
G + T +Q + N F FL P + Y+ + +E++ K P G
Sbjct: 160 NGRQFLTQLMQKEQRNYQFDFL-RPQHSLFNYFTKLVEQYTKILIPPKG 207
>ref|XP_852516.1| PREDICTED: similar to Splicing factor 3 subunit 1 (Spliceosome
associated protein 114) (SAP 114) (SF3a120) isoform 2
[Canis familiaris].
Length = 777
Score = 68.2 bits (165), Expect = 1e-11
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Frame = +1
Query: 523 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
+ PP E R +++K A FVA GPE E +N +NP F+FL + N YYR KV+
Sbjct: 43 IYPPP--EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL-NPNDPYHAYYRHKVS 99
Query: 703 EIRK-------------EAQKLQ-TASQKVSPPEDEEVK----------NLAEKLARFIA 810
E ++ +AQ +Q T K PPE E + ++ + A+F+A
Sbjct: 100 EFKEGKAQEPSAAIPKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVA 159
Query: 811 DGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKAKAGPTG 960
G + T +Q + N F FL P + Y+ + +E++ K P G
Sbjct: 160 RNGRQFLTQLMQKEQRNYQFDFL-RPQHSLFNYFTKLVEQYTKILIPPKG 208
>ref|XP_865183.1| PREDICTED: similar to splicing factor, arginine/serine-rich 14
isoform 3 [Canis familiaris].
Length = 1027
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +1
Query: 544 ETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
+T + EKLARFVA+ GPE+E+ ++EN DNP FLHD+NS F +YRKKV E+
Sbjct: 782 KTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFEL 836
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +1
Query: 730 QTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKY 909
Q++S S D + AEKLARF+A GPE+E +++N+ +N FL++ NS +K+
Sbjct: 769 QSSSPCPSADVDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKF 828
Query: 910 YRQKLEE 930
YR+K+ E
Sbjct: 829 YRKKVFE 835
>ref|XP_852169.1| PREDICTED: similar to splicing factor, arginine/serine-rich 14
isoform 1 [Canis familiaris].
Length = 1095
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +1
Query: 544 ETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
+T + EKLARFVA+ GPE+E+ ++EN DNP FLHD+NS F +YRKKV E+
Sbjct: 782 KTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFEL 836
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +1
Query: 730 QTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKY 909
Q++S S D + AEKLARF+A GPE+E +++N+ +N FL++ NS +K+
Sbjct: 769 QSSSPCPSADVDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKF 828
Query: 910 YRQKLEE 930
YR+K+ E
Sbjct: 829 YRKKVFE 835
>ref|XP_865142.1| PREDICTED: similar to splicing factor, arginine/serine-rich 14
isoform 2 [Canis familiaris].
Length = 685
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +1
Query: 544 ETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
+T + EKLARFVA+ GPE+E+ ++EN DNP FLHD+NS F +YRKKV E+
Sbjct: 372 KTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFEL 426
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +1
Query: 730 QTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKY 909
Q++S S D + AEKLARF+A GPE+E +++N+ +N FL++ NS +K+
Sbjct: 359 QSSSPCPSADVDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKF 418
Query: 910 YRQKLEE 930
YR+K+ E
Sbjct: 419 YRKKVFE 425
>ref|XP_865887.1| PREDICTED: similar to Splicing factor 3 subunit 1 (Spliceosome
associated protein 114) (SAP 114) (SF3a120) isoform 6
[Canis familiaris].
Length = 785
Score = 65.9 bits (159), Expect = 7e-11
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 32/178 (17%)
Frame = +1
Query: 523 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
+ PP E R +++K A FVA GPE E +N +NP F+FL + N YYR KV+
Sbjct: 43 IYPPP--EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL-NPNDPYHAYYRHKVS 99
Query: 703 E------------IRKEAQKLQTASQ----------KVSPPEDEEVK----------NLA 786
E I K Q+ Q A+Q K PPE E + ++
Sbjct: 100 EFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKTIVPKEPPPEFEFIADPPSISAFDLDVV 159
Query: 787 EKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKAKAGPTG 960
+ A+F+A G + T +Q + N F FL P + Y+ + +E++ K P G
Sbjct: 160 KLTAQFVARNGRQFLTQLMQKEQRNYQFDFL-RPQHSLFNYFTKLVEQYTKILIPPKG 216
>ref|XP_865843.1| PREDICTED: similar to Splicing factor 3 subunit 1 (Spliceosome
associated protein 114) (SAP 114) (SF3a120) isoform 4
[Canis familiaris].
Length = 776
Score = 65.5 bits (158), Expect = 9e-11
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Frame = +1
Query: 523 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
+ PP E R +++K A FVA GPE E +N +NP F+FL + N YYR KV+
Sbjct: 43 IYPPP--EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL-NPNDPYHAYYRHKVS 99
Query: 703 EIRK-EAQKLQ------------TASQKVSPPEDEEVK----------NLAEKLARFIAD 813
E ++ +AQ+ T K PPE E + ++ + A+F+A
Sbjct: 100 EFKEGKAQEPSAAIPKGPSLWPATIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVAR 159
Query: 814 GGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKAKAGPTG 960
G + T +Q + N F FL P + Y+ + +E++ K P G
Sbjct: 160 NGRQFLTQLMQKEQRNYQFDFL-RPQHSLFNYFTKLVEQYTKILIPPKG 207
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.311 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,949,199
Number of extensions: 1412647
Number of successful extensions: 6298
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6243
Number of HSP's successfully gapped: 21
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013599
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013599
(1105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096748.1| splicing factor 4 [Bos taurus]. 608 e-174
Alignment gi|XP_002688569.1| PREDICTED: CG31550-like [Bos taurus]. 65 1e-10
Alignment gi|XP_884815.4| PREDICTED: CG31550-like isoform 3 [Bos taurus]. 65 1e-10
Alignment gi|NP_001074979.1| splicing factor 3A subunit 1 [Bos taurus]. 64 2e-10
Alignment gi|NP_001103268.1| calcium homeostasis endoplasmic reticulum pr... 62 9e-10
>ref|NP_001096748.1| splicing factor 4 [Bos taurus].
Length = 635
Score = 608 bits (1567), Expect = e-174
Identities = 309/362 (85%), Positives = 313/362 (86%)
Frame = +1
Query: 16 MSLKMDNRDVAGKANRWFGVAPAKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVA 195
MSLKMDNRDVAGKANRWFGVAP KSGKMNMNILHQEELIAQKKREIEA+MEQKAKQNQ A
Sbjct: 1 MSLKMDNRDVAGKANRWFGVAPPKSGKMNMNILHQEELIAQKKREIEARMEQKAKQNQAA 60
Query: 196 SPQPPNPGEIANAHNSNVSNKFANDGSXXXXXXXXXXAQTSTDXXXXXXXXXXRVLPRPG 375
SPQPP+PGEIAN HNSNVSNKFANDGS AQTSTD RVLPR G
Sbjct: 61 SPQPPHPGEIANVHNSNVSNKFANDGSFLQQFLKLQKAQTSTDAPPSAPTAPPRVLPRTG 120
Query: 376 KRPPLISSLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKVSPPEGAETRK 555
KRPPLISS GQVKNY+HAKQLPVASRPSVFQSP QWLEIKVSPPEGAETRK
Sbjct: 121 KRPPLISSPLGQVKNYMHAKQLPVASRPSVFQSPDEDDEEDYEQWLEIKVSPPEGAETRK 180
Query: 556 VIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQT 735
VIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQ
Sbjct: 181 VIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIRKEAQKLQA 240
Query: 736 ASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYR 915
A QKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYR
Sbjct: 241 APQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYR 300
Query: 916 QKLEEFRKAKAGPTGPPMAPDLGLKHTSPPETPLGSLPTGTGCPISSAPFAHINPSSAAP 1095
QKLEEFRKAKAGPTG PMAPDLGLK SPPETPLGS PT T CP SSAP NP +AAP
Sbjct: 301 QKLEEFRKAKAGPTGTPMAPDLGLKRRSPPETPLGSTPTATACPTSSAPLPTANPPAAAP 360
Query: 1096 GK 1101
GK
Sbjct: 361 GK 362
>ref|XP_002688569.1| PREDICTED: CG31550-like [Bos taurus].
Length = 1096
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +1
Query: 544 ETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
+T + EKLA+FVA+ GPE+E+ ++EN DNP FLHD+NS F +YRKKV E+
Sbjct: 781 KTMETAEKLAKFVAQVGPEIEQFSIENSIDNPDLWFLHDQNSSAFKFYRKKVFEL 835
Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +1
Query: 730 QTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKY 909
QT+S S D + AEKLA+F+A GPE+E +++N+ +N FL++ NS +K+
Sbjct: 768 QTSSPCPSIDVDTKTMETAEKLAKFVAQVGPEIEQFSIENSIDNPDLWFLHDQNSSAFKF 827
Query: 910 YRQKLEE 930
YR+K+ E
Sbjct: 828 YRKKVFE 834
>ref|XP_884815.4| PREDICTED: CG31550-like isoform 3 [Bos taurus].
Length = 1096
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +1
Query: 544 ETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
+T + EKLA+FVA+ GPE+E+ ++EN DNP FLHD+NS F +YRKKV E+
Sbjct: 781 KTMETAEKLAKFVAQVGPEIEQFSIENSIDNPDLWFLHDQNSSAFKFYRKKVFEL 835
Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +1
Query: 730 QTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKY 909
QT+S S D + AEKLA+F+A GPE+E +++N+ +N FL++ NS +K+
Sbjct: 768 QTSSPCPSIDVDTKTMETAEKLAKFVAQVGPEIEQFSIENSIDNPDLWFLHDQNSSAFKF 827
Query: 910 YRQKLEE 930
YR+K+ E
Sbjct: 828 YRKKVFE 834
>ref|NP_001074979.1| splicing factor 3A subunit 1 [Bos taurus].
Length = 793
Score = 63.9 bits (154), Expect = 2e-10
Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 40/186 (21%)
Frame = +1
Query: 523 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
+ PP E R +++K A FVA GPE E +N +NP F+FL + N YYR KV+
Sbjct: 43 IYPPP--EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL-NPNDPYHAYYRHKVS 99
Query: 703 E------------IRKEAQKLQTASQ------------------KVSPPEDEEVK----- 777
E I K Q+ Q ASQ K PPE E +
Sbjct: 100 EFKEGKAQEPSAAIPKVMQQQQQASQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSI 159
Query: 778 -----NLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKA 942
++ + A+F+A G + T +Q + N F FL P + Y+ + +E++ K
Sbjct: 160 SAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFL-RPQHSLFNYFTKLVEQYTKI 218
Query: 943 KAGPTG 960
P G
Sbjct: 219 LIPPKG 224
>ref|NP_001103268.1| calcium homeostasis endoplasmic reticulum protein [Bos taurus].
Length = 916
Score = 62.0 bits (149), Expect = 9e-10
Identities = 31/58 (53%), Positives = 38/58 (65%)
Frame = +1
Query: 529 PPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
PP+ E R VI+KLA+FVA GPE EK+ ME KDNP FSFL + YY+ K+A
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKLA 61
Score = 60.5 bits (145), Expect = 3e-09
Identities = 36/114 (31%), Positives = 59/114 (51%)
Frame = +1
Query: 754 PPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEF 933
PP+D+E++N+ +KLA+F+A GPE E + ++ ++N FSFL+ + Y YY+ KL
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKLALE 63
Query: 934 RKAKAGPTGPPMAPDLGLKHTSPPETPLGSLPTGTGCPISSAPFAHINPSSAAP 1095
++ L K +P P +LP P+ AP A + P+ P
Sbjct: 64 QQ------------QLICKQQAPELEPAATLPPLPQPPL--APAAPVAPAQGTP 103
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.311 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,776,412
Number of extensions: 1358772
Number of successful extensions: 5975
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5936
Number of HSP's successfully gapped: 8
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013599
(1105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123593.2| PREDICTED: SURP and G-patch domain-containin... 65 5e-11
Alignment gi|XP_001929266.2| PREDICTED: LOW QUALITY PROTEIN: splicing fac... 63 3e-10
>ref|XP_003123593.2| PREDICTED: SURP and G-patch domain-containing protein 2 [Sus
scrofa].
Length = 761
Score = 65.5 bits (158), Expect = 5e-11
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +1
Query: 544 ETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
+T + EKLA+FVA+ GPE+E+ ++EN DNP FLHD+NS F +YRKKV E+
Sbjct: 470 KTMETAEKLAKFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFEL 524
Score = 57.0 bits (136), Expect = 2e-08
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = +1
Query: 730 QTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKY 909
Q++S S D + AEKLA+F+A GPE+E +++N+ +N FL++ NS +K+
Sbjct: 457 QSSSPCPSSDVDTKTMETAEKLAKFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKF 516
Query: 910 YRQKLEE 930
YR+K+ E
Sbjct: 517 YRKKVFE 523
>ref|XP_001929266.2| PREDICTED: LOW QUALITY PROTEIN: splicing factor 3A subunit 1
isoform 1, partial [Sus scrofa].
Length = 776
Score = 62.8 bits (151), Expect = 3e-10
Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 40/186 (21%)
Frame = +1
Query: 523 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
+ PP E R +++K A FVA GPE E +N +NP F+FL+ N YYR KV+
Sbjct: 22 IYPPP--EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNP-NDPYHAYYRHKVS 78
Query: 703 EIR------------KEAQKLQTASQ------------------KVSPPEDEEVKN---- 780
E + K Q+ Q A+Q K PPE E + +
Sbjct: 79 EFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSI 138
Query: 781 ------LAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKA 942
+ + A+F+A G + T +Q + N F FL P + Y+ + +E++ K
Sbjct: 139 SAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFL-RPQHSLFNYFTKLVEQYTKI 197
Query: 943 KAGPTG 960
P G
Sbjct: 198 LIPPKG 203
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.311 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,644,387
Number of extensions: 883617
Number of successful extensions: 4004
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3980
Number of HSP's successfully gapped: 4
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013599
(1105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081757.1| SURP and G-patch domain-containing protein 1 [M... 506 e-144
Alignment gi|NP_001161762.1| SURP and G-patch domain-containing protein 2... 65 7e-11
Alignment gi|NP_766343.3| SURP and G-patch domain-containing protein 2 [M... 65 7e-11
Alignment gi|NP_080451.4| splicing factor 3A subunit 1 [Mus musculus]. 64 2e-10
Alignment gi|NP_613051.3| calcium homeostasis endoplasmic reticulum prote... 63 5e-10
>ref|NP_081757.1| SURP and G-patch domain-containing protein 1 [Mus musculus].
Length = 643
Score = 506 bits (1304), Expect = e-144
Identities = 267/374 (71%), Positives = 292/374 (78%), Gaps = 12/374 (3%)
Frame = +1
Query: 16 MSLKMDNRDVAGKANRWFGVAPAKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVA 195
MSLKMDNRDVAGKANRWFG+A KSGKMNMNILHQEELIAQKKREIEA+MEQKA+Q+ V
Sbjct: 1 MSLKMDNRDVAGKANRWFGMAQPKSGKMNMNILHQEELIAQKKREIEARMEQKARQSHVP 60
Query: 196 SPQPPNPGEIANAHNSNVSNKFANDGSXXXXXXXXXXAQTSTDXXXXXXXXXXRVLPRPG 375
SPQPP+PGEIA+AHNS +SNKFANDGS AQTSTD +P P
Sbjct: 61 SPQPPHPGEIADAHNSCISNKFANDGSFLQQFLKLQKAQTSTDSAPRAPPS----MPTPS 116
Query: 376 K-RPPLI---------SSLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKV 525
+ PL+ SS G VKNY HAKQLPVA RPSVFQSP QWLEIKV
Sbjct: 117 SLKKPLVLSKRTGLGLSSPTGPVKNYSHAKQLPVAHRPSVFQSPDDDEEEDYEQWLEIKV 176
Query: 526 SPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAE 705
SPPEGAETR+VIEKLARFVAEGGPELEKVAME+YKDNPAF+FLHDKNSREFLYYR+KVAE
Sbjct: 177 SPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAE 236
Query: 706 IRKEAQKLQTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYE 885
IRKEAQK Q A+QKVSPPEDEE KNLAEKLARFIADGGPEVETIALQNNRENQAFSFLY+
Sbjct: 237 IRKEAQKPQAATQKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYD 296
Query: 886 PNSQGYKYYRQKLEEFRKAKAGPTG--PPMAPDLGLKHTSPPETPLGSLPTGTGCPISSA 1059
PNSQGY+YYRQKL+EFRKAKAG TG P AP+ L+ S PE G++P T CP A
Sbjct: 297 PNSQGYRYYRQKLDEFRKAKAGSTGSFPAPAPNPSLRRKSAPEALSGAVPPITACPTPVA 356
Query: 1060 PFAHINPSSAAPGK 1101
P +NP+ + PGK
Sbjct: 357 PAPAVNPTPSIPGK 370
>ref|NP_001161762.1| SURP and G-patch domain-containing protein 2 [Mus musculus].
Length = 1067
Score = 65.5 bits (158), Expect = 7e-11
Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +1
Query: 376 KRPPLISSLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKVSPPEG---AE 546
K PP SS Q AK P S P + L P A+
Sbjct: 707 KPPPRDSSDAAQDCLSEPAKPCPQPSSPGALGPSPRPTGADDSEALPASSRCPSANMDAK 766
Query: 547 TRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
T + EKLARFVA+ GPE+E+ ++EN DNP FLHD++S F +YR+KV E+
Sbjct: 767 TMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQSSSAFKFYREKVLEL 820
Score = 57.4 bits (137), Expect = 2e-08
Identities = 26/72 (36%), Positives = 46/72 (63%)
Frame = +1
Query: 715 EAQKLQTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNS 894
+++ L +S+ S D + AEKLARF+A GPE+E +++N+ +N FL++ +S
Sbjct: 748 DSEALPASSRCPSANMDAKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQSS 807
Query: 895 QGYKYYRQKLEE 930
+K+YR+K+ E
Sbjct: 808 SAFKFYREKVLE 819
>ref|NP_766343.3| SURP and G-patch domain-containing protein 2 [Mus musculus].
Length = 1067
Score = 65.5 bits (158), Expect = 7e-11
Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +1
Query: 376 KRPPLISSLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKVSPPEG---AE 546
K PP SS Q AK P S P + L P A+
Sbjct: 707 KPPPRDSSDAAQDCLSEPAKPCPQPSSPGALGPSPRPTGADDSEALPASSRCPSANMDAK 766
Query: 547 TRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
T + EKLARFVA+ GPE+E+ ++EN DNP FLHD++S F +YR+KV E+
Sbjct: 767 TMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQSSSAFKFYREKVLEL 820
Score = 57.4 bits (137), Expect = 2e-08
Identities = 26/72 (36%), Positives = 46/72 (63%)
Frame = +1
Query: 715 EAQKLQTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNS 894
+++ L +S+ S D + AEKLARF+A GPE+E +++N+ +N FL++ +S
Sbjct: 748 DSEALPASSRCPSANMDAKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQSS 807
Query: 895 QGYKYYRQKLEE 930
+K+YR+K+ E
Sbjct: 808 SAFKFYREKVLE 819
>ref|NP_080451.4| splicing factor 3A subunit 1 [Mus musculus].
Length = 791
Score = 64.3 bits (155), Expect = 2e-10
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 40/233 (17%)
Frame = +1
Query: 382 PPLISSLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKVSPPEGAETRKVI 561
PP+ + ++ +K+ P S+P V I PPE R ++
Sbjct: 13 PPVATESKQPIEEEASSKEDPTPSKPVV----------------GIIYPPPE---VRNIV 53
Query: 562 EKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEIR---------- 711
+K A FVA GPE E +N +NP F+FL+ N YYR KV+E +
Sbjct: 54 DKTASFVARNGPEFEARIRQNEINNPKFNFLNP-NDPYHAYYRHKVSEFKEGKAQEPSAA 112
Query: 712 --KEAQKLQTASQ------------------KVSPPEDEEVKN----------LAEKLAR 801
K Q+ Q A+Q K PPE E + + + + A+
Sbjct: 113 IPKVMQQQQQATQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQ 172
Query: 802 FIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKAKAGPTG 960
F+A G + T +Q + N F FL P + Y+ + +E++ K P G
Sbjct: 173 FVARNGRQFLTQLMQKEQRNYQFDFL-RPQHSLFNYFTKLVEQYTKILIPPKG 224
>ref|NP_613051.3| calcium homeostasis endoplasmic reticulum protein [Mus musculus].
Length = 938
Score = 62.8 bits (151), Expect = 5e-10
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Frame = +1
Query: 529 PPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA-- 702
PP+ E R VI+KLA+FVA GPE EK+ ME KDNP FSFL + YY+ K+A
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKLALE 63
Query: 703 ----EIRKEAQKLQTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQN 849
+++A +L+ S P+ LA + A G P ++ + Q+
Sbjct: 64 QQQLICKQQAPELEPTSAMPPLPQPP----LAPTASLTPAQGTPSMDELIQQS 112
Score = 62.8 bits (151), Expect = 5e-10
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +1
Query: 754 PPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLE-E 930
PP+D+E++N+ +KLA+F+A GPE E + ++ ++N FSFL+ + Y YY+ KL E
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKLALE 63
Query: 931 FRKAKAGPTGPPMAPDLGLKH-TSPPETPLGSLPTGTGCP 1047
++ P + P + PP P SL G P
Sbjct: 64 QQQLICKQQAPELEPTSAMPPLPQPPLAPTASLTPAQGTP 103
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.311 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,247,946
Number of extensions: 1122844
Number of successful extensions: 4897
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4867
Number of HSP's successfully gapped: 9
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013599
(1105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_757386.2| SURP and G-patch domain-containing protein 1 [H... 545 e-155
Alignment gi|NP_001017392.2| SURP and G-patch domain-containing protein 2... 67 4e-11
Alignment gi|NP_055699.2| SURP and G-patch domain-containing protein 2 [H... 67 4e-11
Alignment gi|NP_006378.3| calcium homeostasis endoplasmic reticulum prote... 62 9e-10
Alignment gi|NP_005868.1| splicing factor 3A subunit 1 isoform 1 [Homo sa... 62 9e-10
Alignment gi|NP_001005409.1| splicing factor 3A subunit 1 isoform 2 [Homo... 61 2e-09
>ref|NP_757386.2| SURP and G-patch domain-containing protein 1 [Homo sapiens].
Length = 645
Score = 545 bits (1403), Expect = e-155
Identities = 291/372 (78%), Positives = 298/372 (80%), Gaps = 10/372 (2%)
Frame = +1
Query: 16 MSLKMDNRDVAGKANRWFGVAPAKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVA 195
MSLKMDNRDVAGKANRWFGVAP KSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVA
Sbjct: 1 MSLKMDNRDVAGKANRWFGVAPPKSGKMNMNILHQEELIAQKKREIEAKMEQKAKQNQVA 60
Query: 196 SPQPPNPGEIANAHNSN-VSNKFANDGSXXXXXXXXXXAQTSTDXXXXXXXXXXRV-LPR 369
SPQPP+PGEI NAHNS+ +SNKFANDGS AQTSTD P
Sbjct: 61 SPQPPHPGEITNAHNSSCISNKFANDGSFLQQFLKLQKAQTSTDAPTSAPSAPPSTPTPS 120
Query: 370 PGKRPPLIS--------SLPGQVKNYVHAKQLPVASRPSVFQSPXXXXXXXXXQWLEIKV 525
GKR LIS SLPG VK+Y HAKQLPVA RPSVFQSP QWLEIKV
Sbjct: 121 AGKRSLLISRRTGLGLASLPGPVKSYSHAKQLPVAHRPSVFQSPDEDEEEDYEQWLEIKV 180
Query: 526 SPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAE 705
SPPEGAETRKVIEKLARFVAEGGPELEKVAME+YKDNPAF+FLHDKNSREFLYYRKKVAE
Sbjct: 181 SPPEGAETRKVIEKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYYRKKVAE 240
Query: 706 IRKEAQKLQTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYE 885
IRKEAQK Q ASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYE
Sbjct: 241 IRKEAQKSQAASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYE 300
Query: 886 PNSQGYKYYRQKLEEFRKAKAGPTGPPMAPDLGLKHTSPPETPLGSLPTGTGCPISSAPF 1065
PNSQGYKYYRQKLEEFRKAKA TG APD GLK SPPE GSLP T CP SS P
Sbjct: 301 PNSQGYKYYRQKLEEFRKAKASSTGSFTAPDPGLKRKSPPEALSGSLPPATTCPASSTPA 360
Query: 1066 AHINPSSAAPGK 1101
I P+ AAPGK
Sbjct: 361 PTIIPAPAAPGK 372
>ref|NP_001017392.2| SURP and G-patch domain-containing protein 2 [Homo sapiens].
Length = 1082
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +1
Query: 544 ETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
+T + EKLARFVA+ GPE+E+ ++EN DNP FLHD+NS F +YRKKV E+
Sbjct: 783 KTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFEL 837
Score = 59.7 bits (143), Expect = 5e-09
Identities = 33/96 (34%), Positives = 52/96 (54%)
Frame = +1
Query: 730 QTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKY 909
QT+S S D + AEKLARF+A GPE+E +++N+ +N FL++ NS +K+
Sbjct: 770 QTSSPCPSADIDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKF 829
Query: 910 YRQKLEEFRKAKAGPTGPPMAPDLGLKHTSPPETPL 1017
YR+K+ E + + P G T E+P+
Sbjct: 830 YRKKVFELCPSICFTSSPHNLHTGGGDTTGSQESPV 865
>ref|NP_055699.2| SURP and G-patch domain-containing protein 2 [Homo sapiens].
Length = 1082
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +1
Query: 544 ETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVAEI 708
+T + EKLARFVA+ GPE+E+ ++EN DNP FLHD+NS F +YRKKV E+
Sbjct: 783 KTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFEL 837
Score = 59.7 bits (143), Expect = 5e-09
Identities = 33/96 (34%), Positives = 52/96 (54%)
Frame = +1
Query: 730 QTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKY 909
QT+S S D + AEKLARF+A GPE+E +++N+ +N FL++ NS +K+
Sbjct: 770 QTSSPCPSADIDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKF 829
Query: 910 YRQKLEEFRKAKAGPTGPPMAPDLGLKHTSPPETPL 1017
YR+K+ E + + P G T E+P+
Sbjct: 830 YRKKVFELCPSICFTSSPHNLHTGGGDTTGSQESPV 865
>ref|NP_006378.3| calcium homeostasis endoplasmic reticulum protein [Homo sapiens].
Length = 916
Score = 62.0 bits (149), Expect = 9e-10
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Frame = +1
Query: 754 PPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKL--- 924
PP+D+E++N+ +KLA+F+A GPE E + ++ ++N FSFL+ + Y YY+ KL
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKLALE 63
Query: 925 -------EEFRKAKAGPTGPPMAPDLGLKHTSPPETPLGSLPTGTGCP 1047
++ + + T PP+ PP P +P G P
Sbjct: 64 QQQLICKQQTPELEPAATMPPL--------PQPPLAPAAPIPPAQGAP 103
Score = 62.0 bits (149), Expect = 9e-10
Identities = 31/58 (53%), Positives = 38/58 (65%)
Frame = +1
Query: 529 PPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
PP+ E R VI+KLA+FVA GPE EK+ ME KDNP FSFL + YY+ K+A
Sbjct: 6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKLA 61
>ref|NP_005868.1| splicing factor 3A subunit 1 isoform 1 [Homo sapiens].
Length = 793
Score = 62.0 bits (149), Expect = 9e-10
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 40/186 (21%)
Frame = +1
Query: 523 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
+ PP E R +++K A FVA GPE E +N +NP F+FL+ N YYR KV+
Sbjct: 43 IYPPP--EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNP-NDPYHAYYRHKVS 99
Query: 703 EIRK-----------------------------EAQKLQ-TASQKVSPPEDEEVKN---- 780
E ++ +AQ +Q T K PPE E + +
Sbjct: 100 EFKEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSI 159
Query: 781 ------LAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEEFRKA 942
+ + A+F+A G + T +Q + N F FL P + Y+ + +E++ K
Sbjct: 160 SAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFL-RPQHSLFNYFTKLVEQYTKI 218
Query: 943 KAGPTG 960
P G
Sbjct: 219 LIPPKG 224
>ref|NP_001005409.1| splicing factor 3A subunit 1 isoform 2 [Homo sapiens].
Length = 728
Score = 61.2 bits (147), Expect = 2e-09
Identities = 43/146 (29%), Positives = 64/146 (43%)
Frame = +1
Query: 523 VSPPEGAETRKVIEKLARFVAEGGPELEKVAMENYKDNPAFSFLHDKNSREFLYYRKKVA 702
+ PP E R +++K A FVA GPE E +N +NP F+FL + N YYR KV+
Sbjct: 43 IYPPP--EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL-NPNDPYHAYYRHKVS 99
Query: 703 EIRKEAQKLQTASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLY 882
E + E A+F+A G + T +Q + N F FL
Sbjct: 100 EFK-------------------------EGKAQFVARNGRQFLTQLMQKEQRNYQFDFL- 133
Query: 883 EPNSQGYKYYRQKLEEFRKAKAGPTG 960
P + Y+ + +E++ K P G
Sbjct: 134 RPQHSLFNYFTKLVEQYTKILIPPKG 159
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.311 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,798,983
Number of extensions: 1367266
Number of successful extensions: 5969
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5904
Number of HSP's successfully gapped: 10
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013599
(1105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,565,932
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 0
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)