Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013600
(820 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_787020.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 359 2e-99
>ref|NP_787020.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 [Bos
taurus].
Length = 172
Score = 359 bits (921), Expect = 2e-99
Identities = 165/172 (95%), Positives = 170/172 (98%)
Frame = +2
Query: 107 MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 286
MPGIVELP+LEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG
Sbjct: 1 MPGIVELPSLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 60
Query: 287 KLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRP 466
KLVNQCAL+FFRQIKRHCAEPFTEYWTCIDYSGLQLFR CRKQQA+FDECVLDKLGWVRP
Sbjct: 61 KLVNQCALEFFRQIKRHCAEPFTEYWTCIDYSGLQLFRRCRKQQAQFDECVLDKLGWVRP 120
Query: 467 DLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM 622
DLG+LSKVTKVKTDRPLPENPYHSRARPEPNPE EGDLKPA+HGSRLFFWTM
Sbjct: 121 DLGDLSKVTKVKTDRPLPENPYHSRARPEPNPEVEGDLKPARHGSRLFFWTM 172
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,822,514
Number of extensions: 993245
Number of successful extensions: 3898
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3885
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 172
Effective length of database: 14,339,486
Effective search space: 2466391592
Effective search space used: 2466391592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-013600
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013600
(820 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537861.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 353 1e-97
>ref|XP_537861.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha
subcomplex, 8, 19kDa [Canis familiaris].
Length = 172
Score = 353 bits (905), Expect = 1e-97
Identities = 163/172 (94%), Positives = 166/172 (96%)
Frame = +2
Query: 107 MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 286
MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYG QCDKPNKEFMLCRWEEKDPRRCLEEG
Sbjct: 1 MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGVQCDKPNKEFMLCRWEEKDPRRCLEEG 60
Query: 287 KLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRP 466
KLVNQCALDFFRQIK HCAEPFT+YWTCIDYSGLQL R CR+QQAKFDECVLDKLGWVRP
Sbjct: 61 KLVNQCALDFFRQIKLHCAEPFTDYWTCIDYSGLQLLRRCRQQQAKFDECVLDKLGWVRP 120
Query: 467 DLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM 622
DLGELSKVTKVKTDRPLPENPYHSR RPEPNPE EG+LKPAKHGSRLFFWTM
Sbjct: 121 DLGELSKVTKVKTDRPLPENPYHSRPRPEPNPEIEGELKPAKHGSRLFFWTM 172
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,162,759
Number of extensions: 1019694
Number of successful extensions: 3852
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3849
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 172
Effective length of database: 15,507,568
Effective search space: 2667301696
Effective search space used: 2667301696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013600
(820 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177126.1| NADH dehydrogenase [ubiquinone] 1 alpha subc... 370 e-103
Alignment gi|XP_003353687.1| PREDICTED: hypothetical protein LOC100621473... 100 7e-22
>ref|NP_001177126.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 [Sus
scrofa].
Length = 172
Score = 370 bits (951), Expect = e-103
Identities = 172/172 (100%), Positives = 172/172 (100%)
Frame = +2
Query: 107 MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 286
MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG
Sbjct: 1 MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 60
Query: 287 KLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRP 466
KLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRP
Sbjct: 61 KLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRP 120
Query: 467 DLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM 622
DLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM
Sbjct: 121 DLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM 172
>ref|XP_003353687.1| PREDICTED: hypothetical protein LOC100621473 [Sus scrofa].
Length = 109
Score = 100 bits (250), Expect = 7e-22
Identities = 50/50 (100%), Positives = 50/50 (100%)
Frame = +2
Query: 2 AHAQTLGGPSAVGRGVQGDPGDATSGISSVRATAIMPGIVELPTLEDLKV 151
AHAQTLGGPSAVGRGVQGDPGDATSGISSVRATAIMPGIVELPTLEDLKV
Sbjct: 38 AHAQTLGGPSAVGRGVQGDPGDATSGISSVRATAIMPGIVELPTLEDLKV 87
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,806,483
Number of extensions: 640652
Number of successful extensions: 2595
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2591
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 176
Effective length of database: 8,928,923
Effective search space: 1571490448
Effective search space used: 1571490448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013600
(820 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080979.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 338 2e-93
>ref|NP_080979.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 [Mus
musculus].
Length = 172
Score = 338 bits (868), Expect = 2e-93
Identities = 153/172 (88%), Positives = 165/172 (95%)
Frame = +2
Query: 107 MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 286
MPGIVELPTLE+LKV+EVKVSS+VLKAAAHHYGAQCDK NKEFMLCRWEEKDPRRCL+EG
Sbjct: 1 MPGIVELPTLEELKVEEVKVSSAVLKAAAHHYGAQCDKTNKEFMLCRWEEKDPRRCLKEG 60
Query: 287 KLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRP 466
KLVN CAL+FFRQIK HCAEPFTEYWTC+DYS +QLFRHCR+QQAKFD+CVLDKLGWVRP
Sbjct: 61 KLVNGCALNFFRQIKSHCAEPFTEYWTCLDYSNMQLFRHCRQQQAKFDQCVLDKLGWVRP 120
Query: 467 DLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM 622
DLG+LSKVTKVKTDRPLPENPYHSRARPEPNP EGDLKPAKHG+R FFWT+
Sbjct: 121 DLGQLSKVTKVKTDRPLPENPYHSRARPEPNPVIEGDLKPAKHGTRFFFWTV 172
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,174,178
Number of extensions: 832389
Number of successful extensions: 3281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3232
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 173
Effective length of database: 12,613,959
Effective search space: 2182214907
Effective search space used: 2182214907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013600
(820 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055037.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 345 3e-95
>ref|NP_055037.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 [Homo
sapiens].
Length = 172
Score = 345 bits (885), Expect = 3e-95
Identities = 156/171 (91%), Positives = 165/171 (96%)
Frame = +2
Query: 107 MPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 286
MPGIVELPTLE+LKV EVK+SS+VLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG
Sbjct: 1 MPGIVELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEG 60
Query: 287 KLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRP 466
KLVN+CALDFFRQIKRHCAEPFTEYWTCIDY+G QLFRHCRKQQAKFDECVLDKLGWVRP
Sbjct: 61 KLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDECVLDKLGWVRP 120
Query: 467 DLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWT 619
DLGELSKVTKVKTDRPLPENPYHSR RP+P+PE EGDL+PA HGSR +FWT
Sbjct: 121 DLGELSKVTKVKTDRPLPENPYHSRPRPDPSPEIEGDLQPATHGSRFYFWT 171
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,492,247
Number of extensions: 998123
Number of successful extensions: 3920
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3902
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 172
Effective length of database: 14,967,800
Effective search space: 2574461600
Effective search space used: 2574461600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013600
(820 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 634 e-179
Sscrofa_Chr15 484 e-134
>Sscrofa_Chr01
|| Length = 315321322
Score = 634 bits (320), Expect = e-179
Identities = 320/320 (100%)
Strand = Plus / Minus
Query: 486 aggtcaccaaagtgaaaacagatcggcctttaccagagaatccttatcactcaagagcaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294545148 aggtcaccaaagtgaaaacagatcggcctttaccagagaatccttatcactcaagagcaa 294545089
Query: 546 ggccagagcccaaccctgaggcagaaggcgatctgaagcctgccaaacatggcagccgcc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294545088 ggccagagcccaaccctgaggcagaaggcgatctgaagcctgccaaacatggcagccgcc 294545029
Query: 606 tctttttctggaccatgtgaggacgggtccatggcccacacccagtcacgtgcccaggca 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294545028 tctttttctggaccatgtgaggacgggtccatggcccacacccagtcacgtgcccaggca 294544969
Query: 666 gtggtcgatgtaaactctcctgcagttcacatcaaccgatagagggttctttccgggatc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294544968 gtggtcgatgtaaactctcctgcagttcacatcaaccgatagagggttctttccgggatc 294544909
Query: 726 atgaacattaacaaaaacgttaatttatgtgacttggcagttattctataccatttcctg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294544908 atgaacattaacaaaaacgttaatttatgtgacttggcagttattctataccatttcctg 294544849
Query: 786 cccattaaaaattttaaagg 805
||||||||||||||||||||
Sbjct: 294544848 cccattaaaaattttaaagg 294544829
Score = 337 bits (170), Expect = 6e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 320 aggcagataaagcggcactgtgcagagccttttacagaatactggacctgcattgattac 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294549314 aggcagataaagcggcactgtgcagagccttttacagaatactggacctgcattgattac 294549255
Query: 380 tccggcctgcagctctttcgtcactgtcgcaagcagcaggcaaagtttgatgagtgtgtg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294549254 tccggcctgcagctctttcgtcactgtcgcaagcagcaggcaaagtttgatgagtgtgtg 294549195
Query: 440 ctggacaaactgggctgggtgcggcctgacctgggggagctgtcaaaggt 489
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294549194 ctggacaaactgggctgggtgcggcctgacctgggggagctgtcaaaggt 294549145
Score = 331 bits (167), Expect = 4e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 156 aggtgaaagtcagttcttctgtgctcaaagccgcagcccatcactacggagctcagtgcg 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294552951 aggtgaaagtcagttcttctgtgctcaaagccgcagcccatcactacggagctcagtgcg 294552892
Query: 216 ataagcccaacaaggagttcatgctctgccggtgggaagagaaggacccaaggcggtgtt 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294552891 ataagcccaacaaggagttcatgctctgccggtgggaagagaaggacccaaggcggtgtt 294552832
Query: 276 tagaggaaggcaagctcgtcaaccaatgcgccctggacttctttagg 322
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294552831 tagaggaaggcaagctcgtcaaccaatgcgccctggacttctttagg 294552785
Score = 303 bits (153), Expect = 8e-80
Identities = 160/161 (99%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 2 gcgcatgcgcagacgctaggcggcccctcggcggtcggaaggggagttcaaggagacccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294559757 gcgcatgcgcagacgctaggcggcccctcggcggtcggaaggggagttcaaggagacccg 294559698
Query: 62 ggcgacgcgacttcgggcatctcctcggtccgggctactgccatcatgccgggcatagtg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294559697 ggcgacgcgacttcgggcatctcctcggtccgggctactgccatcatgccgggcatagtg 294559638
Query: 122 gagctgcccactctggaggatctgaaagtg-caggaggtga 161
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 294559637 gagctgcccactctggaggatctgaaagtgccaggaggtga 294559597
>Sscrofa_Chr15
|| Length = 157681621
Score = 484 bits (244), Expect = e-134
Identities = 627/750 (83%), Gaps = 11/750 (1%)
Strand = Plus / Plus
Query: 35 gtcggaaggggagttcaaggagacccgggcgacgcgacttcgggcatctcctcggtccgg 94
||||||||| |||||||||||||| ||| || | | || ||||||||||||||||| ||
Sbjct: 134839749 gtcggaaggagagttcaaggagac--gggagaagaggctgcgggcatctcctcggtcggg 134839806
Query: 95 gctactgccatcatgccgggcatagtggagctgcccactctggaggatctgaaagtgcag 154
||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct: 134839807 gctaccgccatcatgtcggggatagtggagctgcccactctggaagatctgaaagtgcgg 134839866
Query: 155 gaggtgaaagtcagttcttctgtgctcaaagccgcagcccatcactacggagctcagtgc 214
|| | ||||||||||||||| |||| ||||| ||| ||||||||| ||||||||||||
Sbjct: 134839867 gaagggaaagtcagttcttcaatgctgaaagctgcaccccatcactttggagctcagtgc 134839926
Query: 215 gataagcccaacaaggagttcatgctctgccggtgggaagagaaggacccaaggcggtgt 274
| |||||||||||||||||||| |||||||| ||| ||||||||| |||||||||| |||
Sbjct: 134839927 gttaagcccaacaaggagttcacgctctgccagtgtgaagagaagcacccaaggcgatgt 134839986
Query: 275 ttagaggaaggcaagctcgtcaaccaatgcgccctggacttctttaggcagataaagcgg 334
||||||| || |||||| ||| ||| || ||||| |||||| ||||||||| |||| |
Sbjct: 134839987 ttagagggagacaagcttctcagccactgtgccctaaacttctctaggcagatgaagcag 134840046
Query: 335 cactgtgcagagccttttacagaatactggacctgcattgattactccggcctgcagctc 394
||||||| ||| ||||||| ||| |||||||| ||| |||||||| |||||||||
Sbjct: 134840047 cactgtgtggagacttttacggaaaactggaccggcagagattactctggcctgcagggt 134840106
Query: 395 tttcgtcactgtc------gcaagcagcaggcaaagtttgatgagtgtgtgctggacaaa 448
||||||||||||| ||||||| ||||| ||||||| || |||||||||||
Sbjct: 134840107 tttcgtcactgtcgctgttgcaagcaagaggcacagtttgacaagcacatgctggacaaa 134840166
Query: 449 ctgggctgggtgcggcctgacctgggggagctgtcaaaggtcaccaaagtgaaaacagat 508
|||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 134840167 ctgggctgagtgcgacctgacctgggagaggtgtcaaaggtcaccaaagtgaaaacagat 134840226
Query: 509 cggcctttaccagagaatccttatcactcaagagcaaggccagagcccaaccctgaggca 568
| | || | ||||||||| |||||||||||||||| ||||||||||||||||| | ||
Sbjct: 134840227 c-tctttcaacagagaatctctatcactcaagagcaaagccagagcccaaccctgggaca 134840285
Query: 569 gaaggcgatctgaagcctgccaaacatggcagccgcctctttttctggaccatgtgagga 628
||||| ||| ||||||| |||||||| ||||| |||||||||||||| || ||||| ||
Sbjct: 134840286 gaaggtgataggaagcctcccaaacatagcagctgcctctttttctggcccgtgtgaaga 134840345
Query: 629 cgggtccatggcccacacccagtcacgtgcccaggcagtggtcgatgtaaactctcctgc 688
| ||| ||||| ||||| ||| || || |||||| || | |||| ||||||| | |
Sbjct: 134840346 caggttcatggtccacaaccactcgtgtacccaggaagcagctgatgaaaactct-cagt 134840404
Query: 689 agttcacatcaaccgatagagggttctttccgggatcatgaacattaacaaaaacgttaa 748
|||| ||||||||||||| ||||| |||| |||||| |||| ||||| ||| |||||
Sbjct: 134840405 agttagcatcaaccgatagggggttgcttccaggatcacaaacactaacagaaatgttaa 134840464
Query: 749 ttt-atgtgacttggcagttattctatacc 777
||| ||||||||||| ||||| ||| ||||
Sbjct: 134840465 tttgatgtgacttggtagttactctgtacc 134840494
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,339,601
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 6
Length of query: 820
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 799
Effective length of database: 2,808,413,156
Effective search space: 2243922111644
Effective search space used: 2243922111644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)