Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013602
(1243 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533172.2| PREDICTED: similar to thioredoxin-related trans... 541 e-154
Alignment gi|XP_859491.1| PREDICTED: similar to thioredoxin-related trans... 436 e-122
Alignment gi|XP_859454.1| PREDICTED: similar to thioredoxin-related trans... 130 3e-30
>ref|XP_533172.2| PREDICTED: similar to thioredoxin-related transmembrane protein 2
isoform 1 [Canis familiaris].
Length = 296
Score = 541 bits (1394), Expect = e-154
Identities = 262/291 (90%), Positives = 271/291 (93%)
Frame = +3
Query: 141 PLIALIYSIPRLSRWLARPYYXXXXXXXXXXXXVRKLPPVCYNLPTQREDGNPCDFDWRE 320
PLIAL+YS+PRLSRWLARPYY VRKLPP+C +LPTQREDGNPCDFDWRE
Sbjct: 6 PLIALVYSVPRLSRWLARPYYLLSALLSVAFLLVRKLPPLCSSLPTQREDGNPCDFDWRE 65
Query: 321 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 500
VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLY+TLCIVFLM
Sbjct: 66 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYITLCIVFLM 125
Query: 501 TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 680
TCKPPLYMGPEYIKYF+DKTIDEEL RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN
Sbjct: 126 TCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 185
Query: 681 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 860
CTGLNFGKVDVGRYTDVS RYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT
Sbjct: 186 CTGLNFGKVDVGRYTDVSVRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 245
Query: 861 FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK 1013
FSEENVIREFNLNELY RAKK+SKAGDNIPEE+P+A TPT PD ESKKDK
Sbjct: 246 FSEENVIREFNLNELYQRAKKLSKAGDNIPEEQPVAPTPTEVPDGESKKDK 296
>ref|XP_859491.1| PREDICTED: similar to thioredoxin-related transmembrane protein 2
isoform 3 [Canis familiaris].
Length = 255
Score = 436 bits (1121), Expect = e-122
Identities = 219/291 (75%), Positives = 228/291 (78%)
Frame = +3
Query: 141 PLIALIYSIPRLSRWLARPYYXXXXXXXXXXXXVRKLPPVCYNLPTQREDGNPCDFDWRE 320
PLIAL+YS+PRLSRWLARPYY VRKLPP+C +LPTQREDGNPCDFDWRE
Sbjct: 6 PLIALVYSVPRLSRWLARPYYLLSALLSVAFLLVRKLPPLCSSLPTQREDGNPCDFDWRE 65
Query: 321 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 500
VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLY+TLCIVFLM
Sbjct: 66 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYITLCIVFLM 125
Query: 501 TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 680
TCKPPLYMGPEYIKYF+DKTIDEEL RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN
Sbjct: 126 TCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 185
Query: 681 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 860
CTGLNFGKVDVGRYTDVS RY
Sbjct: 186 CTGLNFGKVDVGRYTDVSVRY--------------------------------------- 206
Query: 861 FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK 1013
NVIREFNLNELY RAKK+SKAGDNIPEE+P+A TPT PD ESKKDK
Sbjct: 207 --VRNVIREFNLNELYQRAKKLSKAGDNIPEEQPVAPTPTEVPDGESKKDK 255
>ref|XP_859454.1| PREDICTED: similar to thioredoxin-related transmembrane protein 2
isoform 2 [Canis familiaris].
Length = 103
Score = 130 bits (326), Expect = 3e-30
Identities = 61/78 (78%), Positives = 65/78 (83%)
Frame = +3
Query: 141 PLIALIYSIPRLSRWLARPYYXXXXXXXXXXXXVRKLPPVCYNLPTQREDGNPCDFDWRE 320
PLIAL+YS+PRLSRWLARPYY VRKLPP+C +LPTQREDGNPCDFDWRE
Sbjct: 6 PLIALVYSVPRLSRWLARPYYLLSALLSVAFLLVRKLPPLCSSLPTQREDGNPCDFDWRE 65
Query: 321 VEILMFLSAIVMMKNRRS 374
VEILMFLSAIVMMKNRRS
Sbjct: 66 VEILMFLSAIVMMKNRRS 83
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,172,135
Number of extensions: 1290990
Number of successful extensions: 4074
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4067
Number of HSP's successfully gapped: 4
Length of query: 414
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 309
Effective length of database: 15,374,224
Effective search space: 4750635216
Effective search space used: 4750635216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013602
(1243 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015558.1| thioredoxin-related transmembrane protein 2 ... 440 e-123
>ref|NP_001015558.1| thioredoxin-related transmembrane protein 2 [Bos taurus].
Length = 255
Score = 440 bits (1131), Expect = e-123
Identities = 220/291 (75%), Positives = 230/291 (79%)
Frame = +3
Query: 141 PLIALIYSIPRLSRWLARPYYXXXXXXXXXXXXVRKLPPVCYNLPTQREDGNPCDFDWRE 320
PLIAL+YS+PRLSRWLARPYY VRKLPPVC +LPTQREDGNPCDFDWRE
Sbjct: 6 PLIALVYSVPRLSRWLARPYYFLSALLSAAFLLVRKLPPVCESLPTQREDGNPCDFDWRE 65
Query: 321 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 500
VEILMFLSAIVMMKNRRSITVEQH+GNIFMFSKVANAILFFRLDIRMGLLY+TLCIVFLM
Sbjct: 66 VEILMFLSAIVMMKNRRSITVEQHVGNIFMFSKVANAILFFRLDIRMGLLYITLCIVFLM 125
Query: 501 TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 680
TCKPPLYMGPEYIKYFSDKTIDEEL RDKRVTWIVEFFANWS+DCQSFAPIYADLSLKYN
Sbjct: 126 TCKPPLYMGPEYIKYFSDKTIDEELERDKRVTWIVEFFANWSSDCQSFAPIYADLSLKYN 185
Query: 681 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 860
CTGLNFGKVDVGRYTDVSTRYK
Sbjct: 186 CTGLNFGKVDVGRYTDVSTRYK-------------------------------------- 207
Query: 861 FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK 1013
ENVIREFNLNELY RAKK+SKAGD IPEE+P+A P A PD+ESKKDK
Sbjct: 208 ---ENVIREFNLNELYQRAKKLSKAGDKIPEEQPVAAVPAAVPDEESKKDK 255
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,075,224
Number of extensions: 1253797
Number of successful extensions: 3958
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3950
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,207,134
Effective search space: 4390004406
Effective search space used: 4390004406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013602
(1243 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122762.1| PREDICTED: thioredoxin-related transmembrane... 568 e-162
>ref|XP_003122762.1| PREDICTED: thioredoxin-related transmembrane protein 2-like [Sus
scrofa].
Length = 296
Score = 568 bits (1465), Expect = e-162
Identities = 279/291 (95%), Positives = 279/291 (95%)
Frame = +3
Query: 141 PLIALIYSIPRLSRWLARPYYXXXXXXXXXXXXVRKLPPVCYNLPTQREDGNPCDFDWRE 320
PLIALIYSIPRLSRWLARPYY VRKLPPVCYNLPTQREDGNPCDFDWRE
Sbjct: 6 PLIALIYSIPRLSRWLARPYYLLSALLSAAFLLVRKLPPVCYNLPTQREDGNPCDFDWRE 65
Query: 321 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 500
VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM
Sbjct: 66 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 125
Query: 501 TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 680
TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN
Sbjct: 126 TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 185
Query: 681 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 860
CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT
Sbjct: 186 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 245
Query: 861 FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK 1013
FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK
Sbjct: 246 FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK 296
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,340,767
Number of extensions: 805769
Number of successful extensions: 2573
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2565
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,829,335
Effective search space: 2763581855
Effective search space used: 2763581855
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013602
(1243 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080144.1| thioredoxin-related transmembrane protein 2 pre... 516 e-146
>ref|NP_080144.1| thioredoxin-related transmembrane protein 2 precursor [Mus musculus].
Length = 295
Score = 516 bits (1330), Expect = e-146
Identities = 252/291 (86%), Positives = 264/291 (90%)
Frame = +3
Query: 141 PLIALIYSIPRLSRWLARPYYXXXXXXXXXXXXVRKLPPVCYNLPTQREDGNPCDFDWRE 320
PLIAL+YS+PRLSRWLARPY VRKLPP+C LPTQREDGNPCDFDWRE
Sbjct: 6 PLIALVYSVPRLSRWLARPYCLLSALLSIAFLLVRKLPPICNGLPTQREDGNPCDFDWRE 65
Query: 321 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 500
VEILMFLSAIVMMKNRRSITVEQH+GNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM
Sbjct: 66 VEILMFLSAIVMMKNRRSITVEQHVGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 125
Query: 501 TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 680
TCKPPLYMGPEYIKYF+DKTIDEEL RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN
Sbjct: 126 TCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 185
Query: 681 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 860
C+GLNFGKVDVGRYTDVSTRYKVSTSPLT+QLPTLILFQGGKEV+RRPQIDKKGRAVSWT
Sbjct: 186 CSGLNFGKVDVGRYTDVSTRYKVSTSPLTRQLPTLILFQGGKEVIRRPQIDKKGRAVSWT 245
Query: 861 FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK 1013
FSEENVIREFNLNELY RAKK SK GD + EE+P+ PT PD E+KKDK
Sbjct: 246 FSEENVIREFNLNELYQRAKKHSKGGD-MSEEKPVDPAPTTVPDGENKKDK 295
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,937,751
Number of extensions: 1073641
Number of successful extensions: 3394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3384
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 310
Effective length of database: 12,493,815
Effective search space: 3873082650
Effective search space used: 3873082650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013602
(1243 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057043.1| thioredoxin-related transmembrane protein 2 iso... 536 e-152
Alignment gi|NP_001137484.1| thioredoxin-related transmembrane protein 2 ... 445 e-125
>ref|NP_057043.1| thioredoxin-related transmembrane protein 2 isoform 1 [Homo sapiens].
Length = 296
Score = 536 bits (1381), Expect = e-152
Identities = 258/291 (88%), Positives = 269/291 (92%)
Frame = +3
Query: 141 PLIALIYSIPRLSRWLARPYYXXXXXXXXXXXXVRKLPPVCYNLPTQREDGNPCDFDWRE 320
PLIAL+YS+PRLSRWLA+PYY VRKLPP+C+ LPTQREDGNPCDFDWRE
Sbjct: 6 PLIALVYSVPRLSRWLAQPYYLLSALLSAAFLLVRKLPPLCHGLPTQREDGNPCDFDWRE 65
Query: 321 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 500
VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVAN ILFFRLDIRMGLLY+TLCIVFLM
Sbjct: 66 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANTILFFRLDIRMGLLYITLCIVFLM 125
Query: 501 TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 680
TCKPPLYMGPEYIKYF+DKTIDEEL RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN
Sbjct: 126 TCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 185
Query: 681 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 860
CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKE MRRPQIDKKGRAVSWT
Sbjct: 186 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWT 245
Query: 861 FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK 1013
FSEENVIREFNLNELY RAKK+SKAGDNIPEE+P+A TPT D E+KKDK
Sbjct: 246 FSEENVIREFNLNELYQRAKKLSKAGDNIPEEQPVASTPTTVSDGENKKDK 296
>ref|NP_001137484.1| thioredoxin-related transmembrane protein 2 isoform 2 [Homo sapiens].
Length = 258
Score = 445 bits (1144), Expect = e-125
Identities = 221/291 (75%), Positives = 232/291 (79%)
Frame = +3
Query: 141 PLIALIYSIPRLSRWLARPYYXXXXXXXXXXXXVRKLPPVCYNLPTQREDGNPCDFDWRE 320
PLIAL+YS+PRLSRWLA+PYY VRKLPP+C+ LPTQREDGNPCDFDWRE
Sbjct: 6 PLIALVYSVPRLSRWLAQPYYLLSALLSAAFLLVRKLPPLCHGLPTQREDGNPCDFDWRE 65
Query: 321 VEILMFLSAIVMMKNRRSITVEQHIGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLM 500
VEILMFLSAIVMMKNRRS+ FLM
Sbjct: 66 VEILMFLSAIVMMKNRRSM--------------------------------------FLM 87
Query: 501 TCKPPLYMGPEYIKYFSDKTIDEELARDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 680
TCKPPLYMGPEYIKYF+DKTIDEEL RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN
Sbjct: 88 TCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 147
Query: 681 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEVMRRPQIDKKGRAVSWT 860
CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKE MRRPQIDKKGRAVSWT
Sbjct: 148 CTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWT 207
Query: 861 FSEENVIREFNLNELYHRAKKVSKAGDNIPEEEPIAQTPTAAPDQESKKDK 1013
FSEENVIREFNLNELY RAKK+SKAGDNIPEE+P+A TPT D E+KKDK
Sbjct: 208 FSEENVIREFNLNELYQRAKKLSKAGDNIPEEQPVASTPTTVSDGENKKDK 258
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,235,285
Number of extensions: 1271807
Number of successful extensions: 3840
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3831
Number of HSP's successfully gapped: 3
Length of query: 414
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,835,944
Effective search space: 4584306696
Effective search space used: 4584306696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013602
(1243 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 710 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 710 bits (358), Expect = 0.0
Identities = 378/385 (98%)
Strand = Plus / Minus
Query: 859 ctttttctgaggagaatgtgattcgagaattcaacttgaatgagctgtatcatcgggcca 918
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12864323 ctttttcacaggagaatgtgattcgagaattcaacttgaatgagctgtatcatcgggcca 12864264
Query: 919 agaaggtgtcaaaggctggtgataatattcccgaggaggagcctatagcccaaacgccca 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12864263 agaaggtgtcaaaggctggtgataatattcccgaggaggagcctatagcccaaacgccca 12864204
Query: 979 ctgcagcgccagatcaggagagcaagaaagacaaataagatccctgctctcagtgcttcc 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12864203 ctgcagcgccagatcaggagagcaagaaagacaaataagatccctgctctcagtgcttcc 12864144
Query: 1039 tctcctgtcaatcccaggcacctctgaagctctgccctttctgtaaccacaagcctggcc 1098
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 12864143 tctcctgtcaatcccaggcacctctgaggctctgccctttctgtaaccacaagcctggcc 12864084
Query: 1099 ttgagccttggactttaatttatgtttttcctgtttggctacgtctaggtggggcagggt 1158
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12864083 tgaggccttggactttaatttatgtttttcctgtttggctacgtctaggtggggcagggt 12864024
Query: 1159 attgcttctgatttttaagaggcatccaggtatgacaggtatccttcangaaggcctcca 1218
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 12864023 attgcttctgatttttaagaggcatccaggtatgacaggtatccttcaggaaggcctcca 12863964
Query: 1219 ctccagtggcctgctctttaactgg 1243
|||||||||||||||||||||||||
Sbjct: 12863963 ctccagtggcctgctctttaactgg 12863939
Score = 607 bits (306), Expect = e-171
Identities = 312/314 (99%)
Strand = Plus / Minus
Query: 1 gagatctgcttccggatctagaggcggtgcatccgagactaggcccaatggaagcacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12874171 gagatctgcttccggatctagaggcggtgcatccgagactaggcccaatggaagcacaat 12874112
Query: 61 gatgggagaggtgggaccaggcccacggactccgtggagcggctggcgccgctagagccg 120
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12874111 gatgggagaggcgggaccaggctcacggactccgtggagcggctggcgccgctagagccg 12874052
Query: 121 ggaagatggcggttctcgcgcctttaattgctcttatttattcgatacctcgactatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12874051 ggaagatggcggttctcgcgcctttaattgctcttatttattcgatacctcgactatcac 12873992
Query: 181 gatggctggcccgaccttactaccttctgtcagccctcctctctgctgccttcctactcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12873991 gatggctggcccgaccttactaccttctgtcagccctcctctctgctgccttcctactcg 12873932
Query: 241 tgaggaagctgccccctgtctgctacaatctccccacgcaacgcgaagacggcaacccgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12873931 tgaggaagctgccccctgtctgctacaatctccccacgcaacgcgaagacggcaacccgt 12873872
Query: 301 gtgactttgactgg 314
||||||||||||||
Sbjct: 12873871 gtgactttgactgg 12873858
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 739 ggtacaaagtgagcacgtcacccctcaccaagcagctccctaccctaatcctcttccaag 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12865666 ggtacaaagtgagcacgtcacccctcaccaagcagctccctaccctaatcctcttccaag 12865607
Query: 799 gtggcaaggaagtcatgcggcggccacagattgacaagaaaggacgagctgtctcctgga 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12865606 gtggcaaggaagtcatgcggcggccacagattgacaagaaaggacgagctgtctcctgga 12865547
Query: 859 ctttttctgagg 870
||||||||||||
Sbjct: 12865546 ctttttctgagg 12865535
Score = 218 bits (110), Expect = 6e-54
Identities = 113/114 (99%)
Strand = Plus / Minus
Query: 376 tcaccgtggaacaacacataggcaacatcttcatgtttagtaaagtggccaatgcaattc 435
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12867322 tcactgtggaacaacacataggcaacatcttcatgtttagtaaagtggccaatgcaattc 12867263
Query: 436 ttttcttccgcctggatattcgcatgggcctgctttaccttacactctgcatag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12867262 ttttcttccgcctggatattcgcatgggcctgctttaccttacactctgcatag 12867209
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 567 gaagagctggcgcgggacaagagggtcacttggatcgtggagttctttgccaattggtct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12866088 gaagagctggcgcgggacaagagggtcacttggatcgtggagttctttgccaattggtct 12866029
Query: 627 aatgactgccagtcatttgctcctatctatgctgacctctcgctcaagt 675
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12866028 aatgactgccagtcatttgctcctatctatgctgacctctcgctcaagt 12865980
Score = 139 bits (70), Expect = 4e-30
Identities = 73/74 (98%)
Strand = Plus / Minus
Query: 669 ctcaagtacaactgcacagggttaaattttgggaaggtggacgttggacgctacactgat 728
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12865814 ctcaggtacaactgcacagggttaaattttgggaaggtggacgttggacgctacactgat 12865755
Query: 729 gttagtacacggta 742
||||||||||||||
Sbjct: 12865754 gttagtacacggta 12865741
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 314 gagagaagtagagatcctgatgtttctcagtgccatcgtgatgatgaagaaccgaagatc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12867615 gagagaagtagagatcctgatgtttctcagtgccatcgtgatgatgaagaaccgaagatc 12867556
Query: 374 ca 375
||
Sbjct: 12867555 ca 12867554
Score = 119 bits (60), Expect = 4e-24
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 487 tagtgttcctgatgacatgcaaannnnnnntgtatatgggccctgagtacatcaagtact 546
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12866404 tagtgttcctgatgacatgcaaaccccccctgtatatgggccctgagtacatcaagtact 12866345
Query: 547 tcagtgataagaccattgatg 567
|||||||||||||||||||||
Sbjct: 12866344 tcagtgataagaccattgatg 12866324
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,421,549
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 8
Length of query: 1243
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1222
Effective length of database: 2,808,413,156
Effective search space: 3431880876632
Effective search space used: 3431880876632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)