Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013615
(1422 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041565.1| zinc transporter SLC39A7 [Canis lupus famili... 306 2e-83
>ref|NP_001041565.1| zinc transporter SLC39A7 [Canis lupus familiaris].
Length = 469
Score = 306 bits (785), Expect = 2e-83
Identities = 179/331 (54%), Positives = 184/331 (55%)
Frame = +3
Query: 426 MARGLGAPHRVAVGLLTWXXXXXXXXXXXXXXDLYEDLQEDLXXXXXXXXXXXXXXXXXX 605
MARGLGAPH VAVGLLTW DL+EDL ED
Sbjct: 1 MARGLGAPHWVAVGLLTWAALGLLVAGHGGHGDLHEDLHEDFHGHSHRRSHEDFHHGHSY 60
Query: 606 XXXXXXXXXXIWXXXXXXXXXXXXXXXXXXXXXXXXSHESLXXXXXXXXXXXXXXXXXXX 785
IW SHESL
Sbjct: 61 AHGHGHTHESIWHGHTHGHEHGHAHEDLHHGHSHGQSHESLYHRGHGHDHEHSHGGYGES 120
Query: 786 XAPGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 965
APGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL
Sbjct: 121 GAPGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 180
Query: 966 LGDAFLHLIPHALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEKFVRHV 1145
LGDAFLHLIPHALEPHSHHPLE ILSVGLWVLSGIVAFLVVEKFVRHV
Sbjct: 181 LGDAFLHLIPHALEPHSHHPLEQPGHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHV 240
Query: 1146 KXXXXXXXXXXXXXXXXXXXXXXXRQECPXXXXXXXXXXXXXAGASRKRRGGSTRPKDGP 1325
K Q+ P A SRKR+GGSTR KDGP
Sbjct: 241 KGGHGHSHGHGHTHGHTQGSHGHGTQKYPSKEKQSSEEEEKEANGSRKRKGGSTRLKDGP 300
Query: 1326 VRPQHSGEEKAGSDWRVSGYLNLAADLXHNF 1418
+RPQ+S EEK GSD RVSGYLNLAADL HNF
Sbjct: 301 LRPQNSEEEKTGSDLRVSGYLNLAADLAHNF 331
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,904,746
Number of extensions: 1763546
Number of successful extensions: 9219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9119
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 367
Effective length of database: 15,307,552
Effective search space: 5617871584
Effective search space used: 5617871584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013615
(1422 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069705.2| solute carrier family 39, member 7 [Bos taur... 311 1e-84
Alignment gi|NP_001091601.1| zinc transporter ZIP13 [Bos taurus]. 52 1e-06
>ref|NP_001069705.2| solute carrier family 39, member 7 [Bos taurus].
Length = 469
Score = 311 bits (796), Expect = 1e-84
Identities = 182/331 (54%), Positives = 185/331 (55%)
Frame = +3
Query: 426 MARGLGAPHRVAVGLLTWXXXXXXXXXXXXXXDLYEDLQEDLXXXXXXXXXXXXXXXXXX 605
MARGLGAP VAVGLLTW DLYEDL ED
Sbjct: 1 MARGLGAPRWVAVGLLTWAALGLLVAGHGGHGDLYEDLHEDFHGHSHRHSHEDFHHGHSH 60
Query: 606 XXXXXXXXXXIWXXXXXXXXXXXXXXXXXXXXXXXXSHESLXXXXXXXXXXXXXXXXXXX 785
IW SHESL
Sbjct: 61 AHGHGHTHESIWHGHTHGHDHGHLHEDLHHGHSHGHSHESLHHRGHGHDHEHSHGGSGES 120
Query: 786 XAPGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 965
APG+KQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL
Sbjct: 121 GAPGVKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 180
Query: 966 LGDAFLHLIPHALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEKFVRHV 1145
LGDAFLHLIPHALEPHSHHP E ILSVGLWVLSGIVAFLVVEKFVRHV
Sbjct: 181 LGDAFLHLIPHALEPHSHHPPEQPGHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHV 240
Query: 1146 KXXXXXXXXXXXXXXXXXXXXXXXRQECPXXXXXXXXXXXXXAGASRKRRGGSTRPKDGP 1325
K RQE AGA RKRRGGSTRPKDGP
Sbjct: 241 KGGHGHSHGHGHAHGHTHGSHEHGRQERSSKEKQSSEEEEKEAGALRKRRGGSTRPKDGP 300
Query: 1326 VRPQHSGEEKAGSDWRVSGYLNLAADLXHNF 1418
VRPQ++ EEKAGSD RVSGYLNLAADL HNF
Sbjct: 301 VRPQNAEEEKAGSDLRVSGYLNLAADLAHNF 331
>ref|NP_001091601.1| zinc transporter ZIP13 [Bos taurus].
Length = 423
Score = 52.0 bits (123), Expect = 1e-06
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +3
Query: 828 WAYALGATVLISAAPFFVLFLIPVESNSPRHRSL----LQILLSFASGGLLGDAFLHLIP 995
W +L ++++ + F L +IP+E + L+ LLSFA GGLLG+ FLHL+P
Sbjct: 68 WICSLLGSLMVGLSGVFPLLVIPLEMGTTLRSEAGARRLKQLLSFALGGLLGNVFLHLLP 127
Query: 996 HALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEK 1130
A + +GLWV++G + FLV+EK
Sbjct: 128 EAWAYTNSASSGGERQSLQQQQ-----QLGLWVIAGFLTFLVLEK 167
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,438,230
Number of extensions: 1711924
Number of successful extensions: 8835
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8751
Number of HSP's successfully gapped: 2
Length of query: 474
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 368
Effective length of database: 14,174,046
Effective search space: 5216048928
Effective search space used: 5216048928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013615
(1422 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124517.1| zinc transporter SLC39A7 [Sus scrofa]. 340 9e-94
Alignment gi|XP_003122856.1| PREDICTED: zinc transporter ZIP13-like [Sus ... 53 5e-07
Alignment gi|XP_003130776.1| PREDICTED: zinc transporter ZIP12 isoform 2 ... 49 9e-06
Alignment gi|XP_003130775.1| PREDICTED: zinc transporter ZIP12 isoform 1 ... 49 9e-06
>ref|NP_001124517.1| zinc transporter SLC39A7 [Sus scrofa].
Length = 469
Score = 340 bits (873), Expect = 9e-94
Identities = 194/331 (58%), Positives = 194/331 (58%)
Frame = +3
Query: 426 MARGLGAPHRVAVGLLTWXXXXXXXXXXXXXXDLYEDLQEDLXXXXXXXXXXXXXXXXXX 605
MARGLGAPHRVAVGLLTW DLYEDLQEDL
Sbjct: 1 MARGLGAPHRVAVGLLTWAALGLLVAGHGGHGDLYEDLQEDLHGHSHRHSHEDFHHGHSH 60
Query: 606 XXXXXXXXXXIWXXXXXXXXXXXXXXXXXXXXXXXXSHESLXXXXXXXXXXXXXXXXXXX 785
IW SHESL
Sbjct: 61 AHGHGHTHESIWHGHTHGHDHGHSHEDLHHGHIHGDSHESLYHPGHGHDHEHSHGGYGES 120
Query: 786 XAPGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 965
APGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL
Sbjct: 121 GAPGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 180
Query: 966 LGDAFLHLIPHALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEKFVRHV 1145
LGDAFLHLIPHALEPHSHHPLE ILSVGLWVLSGIVAFLVVEKFVRHV
Sbjct: 181 LGDAFLHLIPHALEPHSHHPLEQPRHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHV 240
Query: 1146 KXXXXXXXXXXXXXXXXXXXXXXXRQECPXXXXXXXXXXXXXAGASRKRRGGSTRPKDGP 1325
K RQECP AGASRKRRGGSTRPKDGP
Sbjct: 241 KGGHGHSHGHGHAHGHTHGGHGHGRQECPSKEKQSSEEEEKEAGASRKRRGGSTRPKDGP 300
Query: 1326 VRPQHSGEEKAGSDWRVSGYLNLAADLXHNF 1418
VRPQHSGEEKAGSD RVSGYLNLAADL HNF
Sbjct: 301 VRPQHSGEEKAGSDLRVSGYLNLAADLAHNF 331
>ref|XP_003122856.1| PREDICTED: zinc transporter ZIP13-like [Sus scrofa].
Length = 364
Score = 52.8 bits (125), Expect = 5e-07
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Frame = +3
Query: 810 LDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSL----LQILLSFASGGLLGDA 977
LDT W +L ++L+ + F L +IP+E + L+ LLSFA GGLLG+
Sbjct: 65 LDT---WICSLLGSLLVGLSGVFPLLVIPLEMGTTLRSEAGAWRLKQLLSFALGGLLGNV 121
Query: 978 FLHLIPHA-LEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEK 1130
FLHL+P A +S P +GLWV++G + FL +EK
Sbjct: 122 FLHLLPEAWAYTYSAGP------GGEGQSLQQQQQLGLWVIAGFLTFLALEK 167
>ref|XP_003130776.1| PREDICTED: zinc transporter ZIP12 isoform 2 [Sus scrofa].
Length = 691
Score = 48.5 bits (114), Expect = 9e-06
Identities = 31/105 (29%), Positives = 47/105 (44%)
Frame = +3
Query: 816 TVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLLGDAFLHLIP 995
T+ + Y+ A L++ LI S +R +LQ+ + A G L GDA LHLIP
Sbjct: 363 TLEKYGYSTVAVTLLTLGSMLGTTLILFHSCEENYRLILQLFVGLAVGTLSGDALLHLIP 422
Query: 996 HALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEK 1130
L+ H LE +L+ ++ GI F ++EK
Sbjct: 423 QILDVHKQEALEFGHFHESKGYIWKLLA----LIGGIHGFFLIEK 463
>ref|XP_003130775.1| PREDICTED: zinc transporter ZIP12 isoform 1 [Sus scrofa].
Length = 654
Score = 48.5 bits (114), Expect = 9e-06
Identities = 31/105 (29%), Positives = 47/105 (44%)
Frame = +3
Query: 816 TVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLLGDAFLHLIP 995
T+ + Y+ A L++ LI S +R +LQ+ + A G L GDA LHLIP
Sbjct: 363 TLEKYGYSTVAVTLLTLGSMLGTTLILFHSCEENYRLILQLFVGLAVGTLSGDALLHLIP 422
Query: 996 HALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEK 1130
L+ H LE +L+ ++ GI F ++EK
Sbjct: 423 QILDVHKQEALEFGHFHESKGYIWKLLA----LIGGIHGFFLIEK 463
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,858,420
Number of extensions: 1109650
Number of successful extensions: 5657
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5624
Number of HSP's successfully gapped: 4
Length of query: 474
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 371
Effective length of database: 8,779,541
Effective search space: 3257209711
Effective search space used: 3257209711
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013615
(1422 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071177.1| zinc transporter SLC39A7 [Mus musculus]. 261 7e-70
Alignment gi|NP_032228.2| zinc transporter SLC39A7 [Mus musculus]. 261 7e-70
>ref|NP_001071177.1| zinc transporter SLC39A7 [Mus musculus].
Length = 476
Score = 261 bits (668), Expect = 7e-70
Identities = 143/210 (68%), Positives = 146/210 (69%)
Frame = +3
Query: 789 APGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLL 968
APGIK LDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLL
Sbjct: 130 APGIKHHLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLL 189
Query: 969 GDAFLHLIPHALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEKFVRHVK 1148
GDAFLHLIPHALEPHSHH E ILSVGLWVLSGIVAFLVVEKFVRHVK
Sbjct: 190 GDAFLHLIPHALEPHSHHAPEQPGHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHVK 249
Query: 1149 XXXXXXXXXXXXXXXXXXXXXXXRQECPXXXXXXXXXXXXXAGASRKRRGGSTRPKDGPV 1328
R EC G RKRRGG+T P+DGPV
Sbjct: 250 GGHGHSHGHGDRHAHGDSHTHGDRHEC-SSKEKPSTEEEKEVGGLRKRRGGNTGPRDGPV 308
Query: 1329 RPQHSGEEKAGSDWRVSGYLNLAADLXHNF 1418
+PQ EEKAGSD RVSGYLNLAADL HNF
Sbjct: 309 KPQSPEEEKAGSDLRVSGYLNLAADLAHNF 338
>ref|NP_032228.2| zinc transporter SLC39A7 [Mus musculus].
Length = 476
Score = 261 bits (668), Expect = 7e-70
Identities = 143/210 (68%), Positives = 146/210 (69%)
Frame = +3
Query: 789 APGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLL 968
APGIK LDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLL
Sbjct: 130 APGIKHHLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLL 189
Query: 969 GDAFLHLIPHALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEKFVRHVK 1148
GDAFLHLIPHALEPHSHH E ILSVGLWVLSGIVAFLVVEKFVRHVK
Sbjct: 190 GDAFLHLIPHALEPHSHHAPEQPGHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHVK 249
Query: 1149 XXXXXXXXXXXXXXXXXXXXXXXRQECPXXXXXXXXXXXXXAGASRKRRGGSTRPKDGPV 1328
R EC G RKRRGG+T P+DGPV
Sbjct: 250 GGHGHSHGHGDRHAHGDSHTHGDRHEC-SSKEKPSTEEEKEVGGLRKRRGGNTGPRDGPV 308
Query: 1329 RPQHSGEEKAGSDWRVSGYLNLAADLXHNF 1418
+PQ EEKAGSD RVSGYLNLAADL HNF
Sbjct: 309 KPQSPEEEKAGSDLRVSGYLNLAADLAHNF 338
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,682,915
Number of extensions: 1419113
Number of successful extensions: 6752
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6671
Number of HSP's successfully gapped: 2
Length of query: 474
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 369
Effective length of database: 12,463,779
Effective search space: 4599134451
Effective search space used: 4599134451
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013615
(1422 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070984.1| zinc transporter SLC39A7 [Homo sapiens]. 296 4e-80
Alignment gi|NP_008910.2| zinc transporter SLC39A7 [Homo sapiens]. 296 4e-80
>ref|NP_001070984.1| zinc transporter SLC39A7 [Homo sapiens].
Length = 469
Score = 296 bits (757), Expect = 4e-80
Identities = 175/331 (52%), Positives = 180/331 (54%)
Frame = +3
Query: 426 MARGLGAPHRVAVGLLTWXXXXXXXXXXXXXXDLYEDLQEDLXXXXXXXXXXXXXXXXXX 605
MARGLGAPH VAVGLLTW DL++DLQED
Sbjct: 1 MARGLGAPHWVAVGLLTWATLGLLVAGLGGHDDLHDDLQEDFHGHSHRHSHEDFHHGHSH 60
Query: 606 XXXXXXXXXXIWXXXXXXXXXXXXXXXXXXXXXXXXSHESLXXXXXXXXXXXXXXXXXXX 785
IW SHESL
Sbjct: 61 AHGHGHTHESIWHGHTHDHDHGHSHEDLHHGHSHGYSHESLYHRGHGHDHEHSHGGYGES 120
Query: 786 XAPGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 965
APGIKQDLD VTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL
Sbjct: 121 GAPGIKQDLDAVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 180
Query: 966 LGDAFLHLIPHALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEKFVRHV 1145
LGDAFLHLIPHALEPHSHH LE ILSVGLWVLSGIVAFLVVEKFVRHV
Sbjct: 181 LGDAFLHLIPHALEPHSHHTLEQPGHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHV 240
Query: 1146 KXXXXXXXXXXXXXXXXXXXXXXXRQECPXXXXXXXXXXXXXAGASRKRRGGSTRPKDGP 1325
K RQE +KRRGGST PKDGP
Sbjct: 241 KGGHGHSHGHGHAHSHTRGSHGHGRQERSTKEKQSSEEEEKETRGVQKRRGGSTVPKDGP 300
Query: 1326 VRPQHSGEEKAGSDWRVSGYLNLAADLXHNF 1418
VRPQ++ EEK G D RVSGYLNLAADL HNF
Sbjct: 301 VRPQNAEEEKRGLDLRVSGYLNLAADLAHNF 331
>ref|NP_008910.2| zinc transporter SLC39A7 [Homo sapiens].
Length = 469
Score = 296 bits (757), Expect = 4e-80
Identities = 175/331 (52%), Positives = 180/331 (54%)
Frame = +3
Query: 426 MARGLGAPHRVAVGLLTWXXXXXXXXXXXXXXDLYEDLQEDLXXXXXXXXXXXXXXXXXX 605
MARGLGAPH VAVGLLTW DL++DLQED
Sbjct: 1 MARGLGAPHWVAVGLLTWATLGLLVAGLGGHDDLHDDLQEDFHGHSHRHSHEDFHHGHSH 60
Query: 606 XXXXXXXXXXIWXXXXXXXXXXXXXXXXXXXXXXXXSHESLXXXXXXXXXXXXXXXXXXX 785
IW SHESL
Sbjct: 61 AHGHGHTHESIWHGHTHDHDHGHSHEDLHHGHSHGYSHESLYHRGHGHDHEHSHGGYGES 120
Query: 786 XAPGIKQDLDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 965
APGIKQDLD VTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL
Sbjct: 121 GAPGIKQDLDAVTLWAYALGATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGL 180
Query: 966 LGDAFLHLIPHALEPHSHHPLEXXXXXXXXXXXXXILSVGLWVLSGIVAFLVVEKFVRHV 1145
LGDAFLHLIPHALEPHSHH LE ILSVGLWVLSGIVAFLVVEKFVRHV
Sbjct: 181 LGDAFLHLIPHALEPHSHHTLEQPGHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHV 240
Query: 1146 KXXXXXXXXXXXXXXXXXXXXXXXRQECPXXXXXXXXXXXXXAGASRKRRGGSTRPKDGP 1325
K RQE +KRRGGST PKDGP
Sbjct: 241 KGGHGHSHGHGHAHSHTRGSHGHGRQERSTKEKQSSEEEEKETRGVQKRRGGSTVPKDGP 300
Query: 1326 VRPQHSGEEKAGSDWRVSGYLNLAADLXHNF 1418
VRPQ++ EEK G D RVSGYLNLAADL HNF
Sbjct: 301 VRPQNAEEEKRGLDLRVSGYLNLAADLAHNF 331
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,670,723
Number of extensions: 1719815
Number of successful extensions: 8539
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8437
Number of HSP's successfully gapped: 2
Length of query: 474
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 368
Effective length of database: 14,802,980
Effective search space: 5447496640
Effective search space used: 5447496640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013615
(1422 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1651 0.0
Sscrofa_Chr06 84 2e-13
>Sscrofa_Chr07
|| Length = 134764511
Score = 1651 bits (833), Expect = 0.0
Identities = 836/837 (99%)
Strand = Plus / Minus
Query: 1 tattggtaaagtattgggaccaaggtagaaccgaattccctgttctcgcgggagctggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760618 tattggtaaagtattgggaccaaggtagaaccgaattccctgttctcgcgggagctggag 29760559
Query: 61 gtgggactgccacgtccgagcaaaccgggaaaggagaggatcccggagccggtgagaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760558 gtgggactgccacgtccgagcaaaccgggaaaggagaggatcccggagccggtgagaata 29760499
Query: 121 gcccgcttttctctgctgtcctttccaagccttttttctcaactagtgggccatagagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760498 gcccgcttttctctgctgtcctttccaagccttttttctcaactagtgggccatagagac 29760439
Query: 181 gagggcccagagagtccaagagtggaggatcaaagcctagagcggtatcccgggggccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760438 gagggcccagagagtccaagagtggaggatcaaagcctagagcggtatcccgggggccct 29760379
Query: 241 acatccgggaaggggttcgggataaagaaaacgaatcttggggacaatgtgggtggggac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760378 acatccgggaaggggttcgggataaagaaaacgaatcttggggacaatgtgggtggggac 29760319
Query: 301 agaatgggacggggaagcggtccatagacgtggacagagggcgctatcggagtaaagcgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760318 agaatgggacggggaagcggtccatagacgtggacagagggcgctatcggagtaaagcgg 29760259
Query: 361 accctgtataggtatacagttgagggtcaagtggagtcattgtctgtgtccctctggtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760258 accctgtataggtatacagttgagggtcaagtggagtcattgtctgtgtccctctggtca 29760199
Query: 421 gcgtgatggccagaggcctgggggccccccacagggtggccgtgggactgctgacgtggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760198 gcgtgatggccagaggcctgggggccccccacagggtggccgtgggactgctgacgtggg 29760139
Query: 481 cagccttggggctgctagtggccggacacgggggtcatggcgacctgtacgaagacctgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760138 cagccttggggctgctagtggccggacacgggggtcatggcgacctgtacgaagacctgc 29760079
Query: 541 aggaggacttgcatggccacagccacaggcattcacatgaggatttccaccatggacaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760078 aggaggacttgcatggccacagccacaggcattcacatgaggatttccaccatggacaca 29760019
Query: 601 gccatgcccatggccatggccatactcatgagagcatctggcatgggcatacccacggtc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29760018 gccatgcccatggccatggccatactcatgagagcatctggcatgggcatacccacggtc 29759959
Query: 661 acgatcatggacattcacatgaggatttgcaccatggccatattcatggcgactcccatg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29759958 acgatcatggacattcacatgaggatttgcaccatggccatattcatggcgactcccatg 29759899
Query: 721 agagcctctaccacccaggacacggacatgaccatgagcacagccatggaggctatgggg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29759898 agagcctctaccacccaggacacggacatgaccatgagcacagccatggaggctatgggg 29759839
Query: 781 aatctggggctccaggcatcaagcaagacttggacactgtcactctctgggcctatg 837
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 29759838 aatctggggctccaggcatcaagcaggacttggacactgtcactctctgggcctatg 29759782
Score = 335 bits (169), Expect = 4e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 837 gcactaggggccacagtgctcatctctgcagctccatttttcgtcctcttccttatcccg 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29759694 gcactaggggccacagtgctcatctctgcagctccatttttcgtcctcttccttatcccg 29759635
Query: 897 gtggagtccaactcacctcggcaccgctctctgctccagatcctgctgagttttgcttcg 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29759634 gtggagtccaactcacctcggcaccgctctctgctccagatcctgctgagttttgcttcg 29759575
Query: 957 ggtgggctcttgggagatgccttcctgcacctcattcctcatgctctgg 1005
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29759574 ggtgggctcttgggagatgccttcctgcacctcattcctcatgctctgg 29759526
Score = 321 bits (162), Expect = 6e-85
Identities = 165/166 (99%)
Strand = Plus / Minus
Query: 1059 ggccagggccccattctgtctgtgggactgtgggtcctcagtggaattgtcgcctttctt 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29759193 ggccagggccccattctgtctgtgggactgtgggtcctcagtggaattgtcgcctttctt 29759134
Query: 1119 gtggtggagaaatttgtgagacacgtgaaaggaggacatggacacagtcacggacatgga 1178
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 29759133 gtggtggagaaatttgtgagacacgtgaaaggaggacatgaacacagtcacggacatgga 29759074
Query: 1179 catgctcacggtcacacgcatggaggtcatggacatggaagacagg 1224
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29759073 catgctcacggtcacacgcatggaggtcatggacatggaagacagg 29759028
Score = 268 bits (135), Expect = 8e-69
Identities = 140/142 (98%)
Strand = Plus / Minus
Query: 1224 gagtgtccttcaaaggaaaagcagagctcagaggaagaagacaaggaagcaggggcatcg 1283
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 29758878 gagtgtccttcaaaggaaaagcagagctcagaggaagaagaaaaggaagcaggggcatcg 29758819
Query: 1284 aggaagagaagaggagggagcacaaggcccaaagatgggccagtgagacctcagcattct 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29758818 aggaagagaagaggagggagcacaaggcccaaagatgggccagtgagacctcagcattct 29758759
Query: 1344 ggagaggaaaaagcaggntcag 1365
||||||||||||||||| ||||
Sbjct: 29758758 ggagaggaaaaagcagggtcag 29758737
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 1005 gaaccccattctcaccaccctctggagcagcccggacacggacattcccacagtgg 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29759379 gaaccccattctcaccaccctctggagcagcccggacacggacattcccacagtgg 29759324
Score = 95.6 bits (48), Expect = 6e-17
Identities = 53/55 (96%)
Strand = Plus / Minus
Query: 1364 agactggcgtgtgtcagggtatctgaatctggctgctgacctgncacacaacttc 1418
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 29758532 agacttgcgtgtgtcagggtatctgaatctggctgctgacctggcacacaacttc 29758478
>Sscrofa_Chr06
|| Length = 157765593
Score = 83.8 bits (42), Expect = 2e-13
Identities = 126/153 (82%), Gaps = 2/153 (1%)
Strand = Plus / Plus
Query: 537 ctgcaggaggacttgcatggccacagccacaggcattcacatgaggatttccaccatgga 596
||||||||||| || ||||| ||||||| ||||| ||| | | || ||||||||| |||
Sbjct: 75985872 ctgcaggaggatttccatggggacagccataggcactcagaagtgggtttccaccaagga 75985931
Query: 597 cacagccatgcccatggccatggccatactcatgagagcatctggcatgggcatacccac 656
|| | ||||||||| ||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 75985932 ca--gtcatgcccatacccatggccaaactcaggagagcatctggcatgggcacacccat 75985989
Query: 657 ggtcacgatcatggacattcacatgaggatttg 689
||||| |||||| |||||| |||||||||
Sbjct: 75985990 agtcacagccatggatgttcacaggaggatttg 75986022
Score = 75.8 bits (38), Expect = 6e-11
Identities = 54/58 (93%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 831 gcctatgcactaggggccacagtgctcatctctgcagctccatttttcgtcctcttcc 888
|||||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 75986083 gcctatgcacaaggg-ccacagtgctgatctctgcagctccatttttcttcctcttcc 75986139
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,695,525
Number of extensions: 320
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 8
Length of query: 1422
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1401
Effective length of database: 2,808,413,156
Effective search space: 3934586831556
Effective search space used: 3934586831556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)