Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013617
(976 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092595.1| cyclin-dependent kinase 2-interacting protei... 324 6e-89
>ref|NP_001092595.1| cyclin-dependent kinase 2-interacting protein [Bos taurus].
Length = 212
Score = 324 bits (831), Expect = 6e-89
Identities = 164/212 (77%), Positives = 180/212 (84%), Gaps = 1/212 (0%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
MEAKTLG+ TPRKPVLSVSARKIKDNAADWHNLILKWE LND GFA AN+IANMKISL S
Sbjct: 1 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDGGFATANSIANMKISLSS 60
Query: 210 KDETXXXXXXXXXXXXX-KMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVC 386
KD+ K HPEYSRELETLCEELQATL+GLTKIQMKMEKLSSTTKGVC
Sbjct: 61 KDKIELASSGLASNDCAEKEHPEYSRELETLCEELQATLEGLTKIQMKMEKLSSTTKGVC 120
Query: 387 ELENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLAL 566
ELE+YH+ EE+KRP LFHTWPTAHFY VSR+LSDMY +EL LKR V ++LAH+A RDLAL
Sbjct: 121 ELEDYHHGEERKRPPLFHTWPTAHFYEVSRKLSDMYSQELRLKRTVVEQLAHTADRDLAL 180
Query: 567 SYLAMWLHQPYVDSDSQLLLESMLLETGHRPL 662
SYL+MWLHQPY+++ S LLLESMLLETGHR L
Sbjct: 181 SYLSMWLHQPYLEAGSWLLLESMLLETGHRVL 212
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,688,635
Number of extensions: 1097115
Number of successful extensions: 5175
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5144
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013617
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013617
(976 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855437.1| PREDICTED: similar to cyclin-dependent kinase 2... 295 6e-80
>ref|XP_855437.1| PREDICTED: similar to cyclin-dependent kinase 2-interacting protein
[Canis familiaris].
Length = 212
Score = 295 bits (754), Expect = 6e-80
Identities = 148/212 (69%), Positives = 167/212 (78%), Gaps = 1/212 (0%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
M TLG TPRKPVLSVSARKIKDNAADWHNLILKWE LND GFA AN IAN+KI+L S
Sbjct: 1 MNPNTLGGTTPRKPVLSVSARKIKDNAADWHNLILKWETLNDTGFATANKIANLKINLWS 60
Query: 210 KDETXXXXXXXXXXXXX-KMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVC 386
+D+T K PEYS+ELE LCE+LQ T D L KIQMKMEKLSSTTKGVC
Sbjct: 61 EDKTELQSSSPASREDADKRLPEYSKELEALCEDLQTTYDALAKIQMKMEKLSSTTKGVC 120
Query: 387 ELENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLAL 566
ELE+YHY + + RP LFHTWPTA+FY VSR+LSDMY +EL LKR V +ELAH+ DL L
Sbjct: 121 ELEDYHYRDGRHRPPLFHTWPTAYFYEVSRKLSDMYQKELLLKRTVIEELAHTMDHDLTL 180
Query: 567 SYLAMWLHQPYVDSDSQLLLESMLLETGHRPL 662
SYL+MWLHQPYV+++S+LLLESMLLETGHR L
Sbjct: 181 SYLSMWLHQPYVETNSKLLLESMLLETGHRAL 212
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,874,078
Number of extensions: 1081888
Number of successful extensions: 5404
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5380
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013617
(976 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128787.1| PREDICTED: cyclin-dependent kinase 2-interac... 392 e-109
Alignment gi|XP_003128788.1| PREDICTED: cyclin-dependent kinase 2-interac... 388 e-108
Alignment gi|XP_001926089.3| PREDICTED: cyclin-dependent kinase 2-interac... 250 1e-66
Alignment gi|XP_003356853.1| PREDICTED: cyclin-dependent kinase 2-interac... 118 4e-27
>ref|XP_003128787.1| PREDICTED: cyclin-dependent kinase 2-interacting protein-like
isoform 1 [Sus scrofa].
Length = 211
Score = 392 bits (1006), Expect = e-109
Identities = 196/211 (92%), Positives = 196/211 (92%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS
Sbjct: 1 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 60
Query: 210 KDETXXXXXXXXXXXXXKMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVCE 389
KDET KMHPEYSRELE LCEELQATLDGLTKIQMKMEKLSSTTKGVCE
Sbjct: 61 KDETELESSSLASENAEKMHPEYSRELEMLCEELQATLDGLTKIQMKMEKLSSTTKGVCE 120
Query: 390 LENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLALS 569
LENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHS HRDLALS
Sbjct: 121 LENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSTHRDLALS 180
Query: 570 YLAMWLHQPYVDSDSQLLLESMLLETGHRPL 662
YLAMWLHQPYVDSDSQLLLESMLLETGHRPL
Sbjct: 181 YLAMWLHQPYVDSDSQLLLESMLLETGHRPL 211
>ref|XP_003128788.1| PREDICTED: cyclin-dependent kinase 2-interacting protein-like
isoform 2 [Sus scrofa].
Length = 210
Score = 388 bits (996), Expect = e-108
Identities = 194/209 (92%), Positives = 194/209 (92%)
Frame = +3
Query: 36 AKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLSKD 215
AKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLSKD
Sbjct: 2 AKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLSKD 61
Query: 216 ETXXXXXXXXXXXXXKMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVCELE 395
ET KMHPEYSRELE LCEELQATLDGLTKIQMKMEKLSSTTKGVCELE
Sbjct: 62 ETELESSSLASENAEKMHPEYSRELEMLCEELQATLDGLTKIQMKMEKLSSTTKGVCELE 121
Query: 396 NYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLALSYL 575
NYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHS HRDLALSYL
Sbjct: 122 NYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSTHRDLALSYL 181
Query: 576 AMWLHQPYVDSDSQLLLESMLLETGHRPL 662
AMWLHQPYVDSDSQLLLESMLLETGHRPL
Sbjct: 182 AMWLHQPYVDSDSQLLLESMLLETGHRPL 210
>ref|XP_001926089.3| PREDICTED: cyclin-dependent kinase 2-interacting protein-like [Sus
scrofa].
Length = 192
Score = 250 bits (638), Expect = 1e-66
Identities = 126/145 (86%), Positives = 127/145 (87%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS
Sbjct: 1 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 60
Query: 210 KDETXXXXXXXXXXXXXKMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVCE 389
KDET KMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVCE
Sbjct: 61 KDETELESSSLASENAEKMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVCE 120
Query: 390 LENYHYTEEQKRPLLFHTWPTAHFY 464
LENYHYTEEQKRPLLFHT + Y
Sbjct: 121 LENYHYTEEQKRPLLFHTCSSKPLY 145
>ref|XP_003356853.1| PREDICTED: cyclin-dependent kinase 2-interacting protein-like [Sus
scrofa].
Length = 58
Score = 118 bits (296), Expect = 4e-27
Identities = 58/58 (100%), Positives = 58/58 (100%)
Frame = +3
Query: 489 MYGRELSLKRVVAQELAHSAHRDLALSYLAMWLHQPYVDSDSQLLLESMLLETGHRPL 662
MYGRELSLKRVVAQELAHSAHRDLALSYLAMWLHQPYVDSDSQLLLESMLLETGHRPL
Sbjct: 1 MYGRELSLKRVVAQELAHSAHRDLALSYLAMWLHQPYVDSDSQLLLESMLLETGHRPL 58
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,585,890
Number of extensions: 750506
Number of successful extensions: 3172
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3165
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013617
(976 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080324.1| cyclin-dependent kinase 2-interacting protein i... 292 2e-79
Alignment gi|XP_923315.1| PREDICTED: cyclin-dependent kinase 2-interactin... 283 1e-76
Alignment gi|NP_081499.1| cyclin-dependent kinase 2-interacting protein i... 269 3e-72
>ref|NP_080324.1| cyclin-dependent kinase 2-interacting protein isoform 1 [Mus
musculus].
Length = 212
Score = 292 bits (748), Expect = 2e-79
Identities = 144/212 (67%), Positives = 171/212 (80%), Gaps = 1/212 (0%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
MEAKTLG TPRKPVLSVSARK+KDNAADWHNLILKW++L+D+GF A++IAN+K+SLLS
Sbjct: 1 MEAKTLGIATPRKPVLSVSARKLKDNAADWHNLILKWDSLSDKGFTTASSIANLKVSLLS 60
Query: 210 KDETXXXXXXXXXXXXX-KMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVC 386
K++ K + +Y + LE LCEELQA LDGLTKIQMKMEKLSSTTKG+C
Sbjct: 61 KEKVELESSSPASMEEEEKTNLDYDKGLEALCEELQAILDGLTKIQMKMEKLSSTTKGIC 120
Query: 387 ELENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLAL 566
ELENYHY EE RP LFHTWPTA FY VSRRLS+ Y +EL LK + ELAH+A R+L+L
Sbjct: 121 ELENYHYREESSRPPLFHTWPTAFFYEVSRRLSEAYKKELLLKHTIGAELAHTADRNLSL 180
Query: 567 SYLAMWLHQPYVDSDSQLLLESMLLETGHRPL 662
+YL+MWLHQPY++S+S+L LESMLLETGHR L
Sbjct: 181 TYLSMWLHQPYIESNSKLQLESMLLETGHRAL 212
>ref|XP_923315.1| PREDICTED: cyclin-dependent kinase 2-interacting protein-like [Mus
musculus].
Length = 212
Score = 283 bits (724), Expect = 1e-76
Identities = 140/212 (66%), Positives = 168/212 (79%), Gaps = 1/212 (0%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
MEAKTLG TPRKPVLSVSARK+KDNAADWHNLILKW++L+D+GF A++IAN+K+SLLS
Sbjct: 1 MEAKTLGIATPRKPVLSVSARKLKDNAADWHNLILKWDSLSDKGFTTASSIANLKVSLLS 60
Query: 210 KDETXXXXXXXXXXXXX-KMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVC 386
K++ K + +Y + LE LCEELQA DGLTKIQMKMEKLSSTTKG+C
Sbjct: 61 KEKVELESSSPASMEEEEKTNLDYDKGLEALCEELQAIFDGLTKIQMKMEKLSSTTKGIC 120
Query: 387 ELENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLAL 566
ELENYHY EE RP LFHTWPTA F VS RLS+ Y +EL LK + ELAH+A R+L+L
Sbjct: 121 ELENYHYREESSRPPLFHTWPTAFFNEVSHRLSEAYKKELLLKHTIGAELAHTADRNLSL 180
Query: 567 SYLAMWLHQPYVDSDSQLLLESMLLETGHRPL 662
+YL+MWL+QPY++S+S+L LESMLLETGHR L
Sbjct: 181 TYLSMWLYQPYIESNSKLQLESMLLETGHRAL 212
>ref|NP_081499.1| cyclin-dependent kinase 2-interacting protein isoform 2 [Mus
musculus].
Length = 262
Score = 269 bits (687), Expect = 3e-72
Identities = 144/262 (54%), Positives = 171/262 (65%), Gaps = 51/262 (19%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
MEAKTLG TPRKPVLSVSARK+KDNAADWHNLILKW++L+D+GF A++IAN+K+SLLS
Sbjct: 1 MEAKTLGIATPRKPVLSVSARKLKDNAADWHNLILKWDSLSDKGFTTASSIANLKVSLLS 60
Query: 210 KDETXXXXXXXXXXXXX-KMHPEYSRELETLCEELQATLDGL------------------ 332
K++ K + +Y + LE LCEELQA LDGL
Sbjct: 61 KEKVELESSSPASMEEEEKTNLDYDKGLEALCEELQAILDGLMSKKAQAHRGAIRVRSAG 120
Query: 333 --------------------------------TKIQMKMEKLSSTTKGVCELENYHYTEE 416
TKIQMKMEKLSSTTKG+CELENYHY EE
Sbjct: 121 AVVPVPLSNSSPLGFRRLFGAKALLLHRKLTETKIQMKMEKLSSTTKGICELENYHYREE 180
Query: 417 QKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLALSYLAMWLHQP 596
RP LFHTWPTA FY VSRRLS+ Y +EL LK + ELAH+A R+L+L+YL+MWLHQP
Sbjct: 181 SSRPPLFHTWPTAFFYEVSRRLSEAYKKELLLKHTIGAELAHTADRNLSLTYLSMWLHQP 240
Query: 597 YVDSDSQLLLESMLLETGHRPL 662
Y++S+S+L LESMLLETGHR L
Sbjct: 241 YIESNSKLQLESMLLETGHRAL 262
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,457,391
Number of extensions: 899910
Number of successful extensions: 4084
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4044
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013617
(976 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_116019.1| cyclin-dependent kinase 2-interacting protein i... 308 5e-84
Alignment gi|NP_001171082.1| cyclin-dependent kinase 2-interacting protei... 303 2e-82
Alignment gi|NP_001171083.1| cyclin-dependent kinase 2-interacting protei... 137 1e-32
>ref|NP_116019.1| cyclin-dependent kinase 2-interacting protein isoform 2 [Homo
sapiens].
Length = 212
Score = 308 bits (789), Expect = 5e-84
Identities = 156/212 (73%), Positives = 172/212 (81%), Gaps = 1/212 (0%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
MEAKTLG+ TPRKPVLSVSARKIKDNAADWHNLILKWE LND GF ANNIAN+KISLL+
Sbjct: 1 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLN 60
Query: 210 KDETXXXXXXXXXXXXX-KMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVC 386
KD+ K+ EY+ ELE LCEELQATLDGLTKIQ+KMEKLSSTTKG+C
Sbjct: 61 KDKIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLTKIQVKMEKLSSTTKGIC 120
Query: 387 ELENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLAL 566
ELENYHY EE KRP LFHTWPT HFY VS +L +MY +EL LKR VA+ELAH+ DL L
Sbjct: 121 ELENYHYGEESKRPPLFHTWPTTHFYEVSHKLLEMYRKELLLKRTVAKELAHTGDPDLTL 180
Query: 567 SYLAMWLHQPYVDSDSQLLLESMLLETGHRPL 662
SYL+MWLHQPYV+SDS+L LESMLLETGHR L
Sbjct: 181 SYLSMWLHQPYVESDSRLHLESMLLETGHRAL 212
>ref|NP_001171082.1| cyclin-dependent kinase 2-interacting protein isoform 1 [Homo
sapiens].
Length = 227
Score = 303 bits (776), Expect = 2e-82
Identities = 153/210 (72%), Positives = 170/210 (80%), Gaps = 1/210 (0%)
Frame = +3
Query: 36 AKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLSKD 215
+KTLG+ TPRKPVLSVSARKIKDNAADWHNLILKWE LND GF ANNIAN+KISLL+KD
Sbjct: 18 SKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLNKD 77
Query: 216 ETXXXXXXXXXXXXX-KMHPEYSRELETLCEELQATLDGLTKIQMKMEKLSSTTKGVCEL 392
+ K+ EY+ ELE LCEELQATLDGLTKIQ+KMEKLSSTTKG+CEL
Sbjct: 78 KIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLTKIQVKMEKLSSTTKGICEL 137
Query: 393 ENYHYTEEQKRPLLFHTWPTAHFYAVSRRLSDMYGRELSLKRVVAQELAHSAHRDLALSY 572
ENYHY EE KRP LFHTWPT HFY VS +L +MY +EL LKR VA+ELAH+ DL LSY
Sbjct: 138 ENYHYGEESKRPPLFHTWPTTHFYEVSHKLLEMYRKELLLKRTVAKELAHTGDPDLTLSY 197
Query: 573 LAMWLHQPYVDSDSQLLLESMLLETGHRPL 662
L+MWLHQPYV+SDS+L LESMLLETGHR L
Sbjct: 198 LSMWLHQPYVESDSRLHLESMLLETGHRAL 227
>ref|NP_001171083.1| cyclin-dependent kinase 2-interacting protein isoform 3 [Homo
sapiens].
Length = 118
Score = 137 bits (345), Expect = 1e-32
Identities = 72/107 (67%), Positives = 81/107 (75%), Gaps = 1/107 (0%)
Frame = +3
Query: 30 MEAKTLGSPTPRKPVLSVSARKIKDNAADWHNLILKWEALNDRGFAIANNIANMKISLLS 209
MEAKTLG+ TPRKPVLSVSARKIKDNAADWHNLILKWE LND GF ANNIAN+KISLL+
Sbjct: 1 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLN 60
Query: 210 KDE-TXXXXXXXXXXXXXKMHPEYSRELETLCEELQATLDGLTKIQM 347
KD+ K+ EY+ ELE LCEELQATLDGL + ++
Sbjct: 61 KDKIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLMRFRI 107
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,246,676
Number of extensions: 1071235
Number of successful extensions: 4676
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4651
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013617
(976 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 920 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 920 bits (464), Expect = 0.0
Identities = 474/476 (99%), Gaps = 1/476 (0%)
Strand = Plus / Minus
Query: 463 atgccgtttcccgccggctctccgacatgtacgggagggagctcagcctgaagcgcgtgg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129477113 atgccgtttcccgccggctctccgacatgtacgggagggagctcagcctgaagcgcgtgg 129477054
Query: 523 tggcgcaggagctggcgcacagcgcgcaccgcgacctcgccctgagctacctggccatgt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129477053 tggcgcaggagctggcgcacagcgcgcaccgcgacctcgccctgagctacctggccatgt 129476994
Query: 583 ggctgcaccagccctacgtggacagcgacagccagctgctcctggagagcatgctgctgg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129476993 ggctgcaccagccctacgtggacagcgacagccagctgctcctggagagcatgctgctgg 129476934
Query: 643 agaccgggcaccggccgctgtgaccgagacacggccgagcgcctgcacagcatctgtagc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129476933 agaccgggcaccggccgctgtgaccgagacacggccgagcgcctgcacagcatctgtagc 129476874
Query: 703 tcctcagcggacagcctctcgcggtggcctgggtgctgcaccctggcgtcacgccccgtg 762
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 129476873 tcctcagcggacagcctctcgcggtggcctgggtgctgcaccccggcgtcacgccccgtg 129476814
Query: 763 tcgtacccctgatcagggcccatgccgagccctgggggcacaccctgtgctccccgaggg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129476813 tcgtacccctgatcagggcccatgccgagccctgggggcacaccctgtgctccccgaggg 129476754
Query: 823 tctcccagaccggatcatttctccagttctgtggcctctccagacgcccttggtgaccgc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129476753 tctcccagaccggatcatttctccagttctgtggcctctccagacgcccttggtgaccgc 129476694
Query: 883 tgcatgccacctgtcaccatgaaggcttctgcgtgaaa-aaaggagtctctcaaca 937
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 129476693 tgcatgccacctgtcaccatgaaggcttctgcgtgaaataaaggagtctctcaaca 129476638
Score = 333 bits (168), Expect = 1e-88
Identities = 171/172 (99%)
Strand = Plus / Plus
Query: 35 agcaaagactcttggaagcccaacacccagaaaacctgtcttatctgtcagtgcaagaaa 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129381396 agcaaagactcttggaagcccaacacccagaaaacctgtcttatctgtcagtgcaagaaa 129381455
Query: 95 aattaaggacaatgcagccgactggcataatttaatcctgaaatgggaagccctcaatga 154
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 129381456 aattaaggacaatgcagccgattggcataatttaatcctgaaatgggaagccctcaatga 129381515
Query: 155 cagaggttttgctattgcaaataacattgccaacatgaaaatcagtttattg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129381516 cagaggttttgctattgcaaataacattgccaacatgaaaatcagtttattg 129381567
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 206 gagcaaagatgagacagaactggagagcagcagcctggcttctgagaatgcagagaagat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129382806 gagcaaagatgagacagaactggagagcagcagcctggcttctgagaatgcagagaagat 129382865
Query: 266 gcacccggaatacagcagggagctggagacgctgtgtgaggagctgcaggccaccctgga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129382866 gcacccggaatacagcagggagctggagacgctgtgtgaggagctgcaggccaccctgga 129382925
Query: 326 tggtctg 332
|||||||
Sbjct: 129382926 tggtctg 129382932
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 332 gaccaaaatacagatgaaaatggaaaagctgtcttcaactaccaagggcgtttgtgaact 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129389230 gaccaaaatacagatgaaaatggaaaagctgtcttcaactaccaagggcgtttgtgaact 129389289
Query: 392 ggaaaattaccactacacggaggagcaaaaacggcccctgctctttcacacgtggcccac 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129389290 ggaaaattaccactacacggaggagcaaaaacggcccctgctctttcacacgtggcccac 129389349
Score = 71.9 bits (36), Expect = 6e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 gtctctttcctgggatccctgcggatggcatggaag 36
||||||||||||||||||||||||||||||||||||
Sbjct: 129378257 gtctctttcctgggatccctgcggatggcatggaag 129378292
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,990,880
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 5
Length of query: 976
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 955
Effective length of database: 2,808,413,156
Effective search space: 2682034563980
Effective search space used: 2682034563980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)