Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013619
(1075 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535275.2| PREDICTED: similar to Beta-hexosaminidase beta ... 333 2e-91
Alignment gi|XP_544758.2| PREDICTED: similar to Beta-hexosaminidase alpha... 293 2e-79
>ref|XP_535275.2| PREDICTED: similar to Beta-hexosaminidase beta chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase B)
(Cervical cancer proto-oncogene 7) (HCC-7) [Canis
familiaris].
Length = 570
Score = 333 bits (854), Expect = 2e-91
Identities = 161/225 (71%), Positives = 185/225 (82%), Gaps = 2/225 (0%)
Frame = +3
Query: 405 ELQQLQVHV--ESECDTFPSISSNESYVLHVKGPEALLRANTVWGALRGLETFSQLIYQD 578
EL+QL V + +SECD +P+++S+ESY L VK P A L+AN VWGALRGLETFSQLIYQD
Sbjct: 140 ELKQLLVSIVLDSECDLYPNVTSDESYSLVVKAPVAFLKANRVWGALRGLETFSQLIYQD 199
Query: 579 SYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAFNKFNVLHWHIVDDQ 758
SYGTFT+NE IID PRFPHRGILIDT RHFL +K+I +TLDAMAFNKFNVLHWHIVDDQ
Sbjct: 200 SYGTFTINECNIIDSPRFPHRGILIDTARHFLPIKSILETLDAMAFNKFNVLHWHIVDDQ 259
Query: 759 SFPYQSINFPLLSSKGSYSLSHVYTPNDVRMVIEYARIRGIRVMPEFDTPGHSRSWGKGQ 938
SFPYQS+ FP LS+KGSYSLSHVYTP DV VIEYAR+RGIRV+PEFD+PGH++SWGKGQ
Sbjct: 260 SFPYQSVTFPELSNKGSYSLSHVYTPTDVHTVIEYARLRGIRVIPEFDSPGHTQSWGKGQ 319
Query: 939 KDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPDE 1073
K+LLTPCY S TFGP IL T F F+E+S VFPD+
Sbjct: 320 KNLLTPCYNGHKQSETFGPINPILNSTYSFLSQLFKEVSAVFPDQ 364
>ref|XP_544758.2| PREDICTED: similar to Beta-hexosaminidase alpha chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase A) [Canis
familiaris].
Length = 529
Score = 293 bits (750), Expect = 2e-79
Identities = 149/292 (51%), Positives = 188/292 (64%), Gaps = 3/292 (1%)
Frame = +3
Query: 204 LWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGFYKWHQGS 383
LWP P + S + P++F F + +S A C +L EAF+RY D +F W+
Sbjct: 23 LWPWPQYIQTSEAHYAIFPHDFQFRYHSSSAAQPGCSVLDEAFQRYRDLLFSSRAWYPPE 82
Query: 384 -YQLCFGTELQQLQVHVESE-CDTFPSISSNESYVLHVKGPEALLRANTVWGALRGLETF 557
+ E L V V + C+ PS+ S E+Y L + L + TVWGALRGLETF
Sbjct: 83 PTRKLHALEKNSLVVLVVTPGCNQLPSLESLENYTLTINDDHCFLLSETVWGALRGLETF 142
Query: 558 SQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAFNKFNVLH 737
SQL+++ G F +N++EI DFPRF HRG+L+DT RH+L + TI TLDAMA+NKFNV H
Sbjct: 143 SQLVWRSPEGMFLINKTEIEDFPRFSHRGLLLDTSRHYLPLTTIMDTLDAMAYNKFNVFH 202
Query: 738 WHIVDDQSFPYQSINFPLLSSKGSYS-LSHVYTPNDVRMVIEYARIRGIRVMPEFDTPGH 914
WH+VDD SFPY S FP L+ KGSY+ +H+YT DV+MVIEYAR+RGIRV+ EFDTPGH
Sbjct: 203 WHLVDDSSFPYDSYTFPELTRKGSYNPATHIYTAQDVKMVIEYARLRGIRVLAEFDTPGH 262
Query: 915 SRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPD 1070
+ SWG G LLTPCY SGTFGP IL T F FF E+S+VFPD
Sbjct: 263 TLSWGPGVPGLLTPCYSGSHPSGTFGPVNPILNSTYEFMSSFFLEVSSVFPD 314
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,078,918
Number of extensions: 1279128
Number of successful extensions: 3577
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3558
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013619
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013619
(1075 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069978.2| beta-hexosaminidase subunit beta preproprote... 455 e-128
Alignment gi|XP_002696307.1| PREDICTED: hexosaminidase B (beta polypeptid... 455 e-128
Alignment gi|XP_001787814.1| PREDICTED: hexosaminidase B [Bos taurus]. 455 e-128
Alignment gi|XP_001254509.2| PREDICTED: hexosaminidase B preproprotein-li... 445 e-125
Alignment gi|XP_002696308.1| PREDICTED: hexosaminidase B preproprotein-li... 315 3e-86
Alignment gi|NP_001068632.1| beta-hexosaminidase subunit alpha precursor ... 296 2e-80
>ref|NP_001069978.2| beta-hexosaminidase subunit beta preproprotein [Bos taurus].
Length = 537
Score = 455 bits (1171), Expect = e-128
Identities = 221/299 (73%), Positives = 245/299 (81%), Gaps = 2/299 (0%)
Frame = +3
Query: 183 SGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGF 362
S + L LWPLP ++ +PR +LSP NFFFGHSPTSKAG SC +LQEAFRRYYD+IFGF
Sbjct: 29 SASGDLNLWPLPVSLKTTPRLFYLSPGNFFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGF 88
Query: 363 YKWHQGSYQLCFGTELQQLQVHV--ESECDTFPSISSNESYVLHVKGPEALLRANTVWGA 536
YKWH G ++ ELQ+L+V V + ECD+FPSI+S+ESY L VKGP A L AN VWG
Sbjct: 89 YKWHHGHNKIPSEMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGV 148
Query: 537 LRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAF 716
LRGLETFSQLIYQDSYGTFT NES I+D PRFPHRGILIDT RHFL VKTI KTLDAMAF
Sbjct: 149 LRGLETFSQLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAF 208
Query: 717 NKFNVLHWHIVDDQSFPYQSINFPLLSSKGSYSLSHVYTPNDVRMVIEYARIRGIRVMPE 896
NKFNVLHWHIVDDQSFPYQSI+FP LS+KGSYSLSHVYTPNDVR VIEYAR+RGIRV+PE
Sbjct: 209 NKFNVLHWHIVDDQSFPYQSISFPELSNKGSYSLSHVYTPNDVRTVIEYARLRGIRVLPE 268
Query: 897 FDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPDE 1073
FD+PGH+ SWGKGQKDLLTPCY + SGTFGP IL T F F+EISTVFPDE
Sbjct: 269 FDSPGHTESWGKGQKDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDE 327
>ref|XP_002696307.1| PREDICTED: hexosaminidase B (beta polypeptide) [Bos taurus].
Length = 537
Score = 455 bits (1171), Expect = e-128
Identities = 221/299 (73%), Positives = 245/299 (81%), Gaps = 2/299 (0%)
Frame = +3
Query: 183 SGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGF 362
S + L LWPLP ++ +PR +LSP NFFFGHSPTSKAG SC +LQEAFRRYYD+IFGF
Sbjct: 29 SASGDLNLWPLPVSLKTTPRLFYLSPGNFFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGF 88
Query: 363 YKWHQGSYQLCFGTELQQLQVHV--ESECDTFPSISSNESYVLHVKGPEALLRANTVWGA 536
YKWH G ++ ELQ+L+V V + ECD+FPSI+S+ESY L VKGP A L AN VWG
Sbjct: 89 YKWHHGHNKIPSEMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGV 148
Query: 537 LRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAF 716
LRGLETFSQLIYQDSYGTFT NES I+D PRFPHRGILIDT RHFL VKTI KTLDAMAF
Sbjct: 149 LRGLETFSQLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAF 208
Query: 717 NKFNVLHWHIVDDQSFPYQSINFPLLSSKGSYSLSHVYTPNDVRMVIEYARIRGIRVMPE 896
NKFNVLHWHIVDDQSFPYQSI+FP LS+KGSYSLSHVYTPNDVR VIEYAR+RGIRV+PE
Sbjct: 209 NKFNVLHWHIVDDQSFPYQSISFPELSNKGSYSLSHVYTPNDVRTVIEYARLRGIRVLPE 268
Query: 897 FDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPDE 1073
FD+PGH+ SWGKGQKDLLTPCY + SGTFGP IL T F F+EISTVFPDE
Sbjct: 269 FDSPGHTESWGKGQKDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDE 327
>ref|XP_001787814.1| PREDICTED: hexosaminidase B [Bos taurus].
Length = 537
Score = 455 bits (1171), Expect = e-128
Identities = 221/299 (73%), Positives = 245/299 (81%), Gaps = 2/299 (0%)
Frame = +3
Query: 183 SGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGF 362
S + L LWPLP ++ +PR +LSP NFFFGHSPTSKAG SC +LQEAFRRYYD+IFGF
Sbjct: 29 SASGDLNLWPLPVSLKTTPRLFYLSPGNFFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGF 88
Query: 363 YKWHQGSYQLCFGTELQQLQVHV--ESECDTFPSISSNESYVLHVKGPEALLRANTVWGA 536
YKWH G ++ ELQ+L+V V + ECD+FPSI+S+ESY L VKGP A L AN VWG
Sbjct: 89 YKWHHGHNKIPSEMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGV 148
Query: 537 LRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAF 716
LRGLETFSQLIYQDSYGTFT NES I+D PRFPHRGILIDT RHFL VKTI KTLDAMAF
Sbjct: 149 LRGLETFSQLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAF 208
Query: 717 NKFNVLHWHIVDDQSFPYQSINFPLLSSKGSYSLSHVYTPNDVRMVIEYARIRGIRVMPE 896
NKFNVLHWHIVDDQSFPYQSI+FP LS+KGSYSLSHVYTPNDVR VIEYAR+RGIRV+PE
Sbjct: 209 NKFNVLHWHIVDDQSFPYQSISFPELSNKGSYSLSHVYTPNDVRTVIEYARLRGIRVLPE 268
Query: 897 FDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPDE 1073
FD+PGH+ SWGKGQKDLLTPCY + SGTFGP IL T F F+EISTVFPDE
Sbjct: 269 FDSPGHTESWGKGQKDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDE 327
>ref|XP_001254509.2| PREDICTED: hexosaminidase B preproprotein-like [Bos taurus].
Length = 436
Score = 445 bits (1144), Expect = e-125
Identities = 218/299 (72%), Positives = 243/299 (81%), Gaps = 2/299 (0%)
Frame = +3
Query: 183 SGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGF 362
S + L LWPLP +V +PR L+LSP N FFGHSPTSKAG SC +LQEAFRRYYD+IFGF
Sbjct: 38 SASRDLNLWPLPLSVMTTPRLLYLSPRNDFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGF 97
Query: 363 YKWHQGSYQLCFGTELQQLQVHV--ESECDTFPSISSNESYVLHVKGPEALLRANTVWGA 536
YKW GS + ELQ+L+V V + ECD+FPSI+S+ESY L VKGP A L AN VWG
Sbjct: 98 YKWPLGSDNIPREMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGV 157
Query: 537 LRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAF 716
LRGLETFSQLIYQ+SYGTFT NES I+D PRFPHRGILIDT RHFL VKTI KTLDAMAF
Sbjct: 158 LRGLETFSQLIYQNSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAF 217
Query: 717 NKFNVLHWHIVDDQSFPYQSINFPLLSSKGSYSLSHVYTPNDVRMVIEYARIRGIRVMPE 896
NKFNVLHWHIVDDQSFPYQSI+FP LS+KGSYSLSHVYTPNDV VIEYAR+RGIR++PE
Sbjct: 218 NKFNVLHWHIVDDQSFPYQSISFPELSNKGSYSLSHVYTPNDVHTVIEYARLRGIRILPE 277
Query: 897 FDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPDE 1073
FD+PGH+ SWGKGQ+DLLTPCY + SGTFGP IL T F F+EISTVFPDE
Sbjct: 278 FDSPGHTASWGKGQEDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDE 336
>ref|XP_002696308.1| PREDICTED: hexosaminidase B preproprotein-like [Bos taurus].
Length = 259
Score = 315 bits (808), Expect = 3e-86
Identities = 155/209 (74%), Positives = 171/209 (81%), Gaps = 2/209 (0%)
Frame = +3
Query: 183 SGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGF 362
S + L LWPLP +V +PR L+LSP N FFGHSPTSKAG SC +LQEAFRRYYD+IFGF
Sbjct: 38 SASRDLNLWPLPLSVMTTPRLLYLSPRNDFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGF 97
Query: 363 YKWHQGSYQLCFGTELQQLQVHV--ESECDTFPSISSNESYVLHVKGPEALLRANTVWGA 536
YKW GS + ELQ+L+V V + ECD+FPSI+S+ESY L VKGP A L AN VWG
Sbjct: 98 YKWPLGSDNIPREMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGV 157
Query: 537 LRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAF 716
LRGLETFSQLIYQDSYGTFT NES I+D PRFPHRGILIDT RHFL VKTI KTLDAMAF
Sbjct: 158 LRGLETFSQLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAF 217
Query: 717 NKFNVLHWHIVDDQSFPYQSINFPLLSSK 803
NKFNVLHWHIVDDQSFPYQSI+FP LS+K
Sbjct: 218 NKFNVLHWHIVDDQSFPYQSISFPELSNK 246
>ref|NP_001068632.1| beta-hexosaminidase subunit alpha precursor [Bos taurus].
Length = 529
Score = 296 bits (758), Expect = 2e-80
Identities = 153/292 (52%), Positives = 192/292 (65%), Gaps = 3/292 (1%)
Frame = +3
Query: 204 LWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGFYKWH-QG 380
LWP P + S + P +F F + +S A C +L EAF+RY D +FG +
Sbjct: 23 LWPWPQYIQTSELRYTIFPQSFQFQYHLSSAAQVGCSVLDEAFQRYRDLLFGSVAFRFPH 82
Query: 381 SYQLCFGTELQQLQVHVESE-CDTFPSISSNESYVLHVKGPEALLRANTVWGALRGLETF 557
+ +E L V V + CD FPS+ S E+Y L + ++LL + TVWGALRGLETF
Sbjct: 83 PIEKRHTSEKNSLVVLVVTPGCDQFPSLGSVENYTLTINDEQSLLLSETVWGALRGLETF 142
Query: 558 SQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAFNKFNVLH 737
SQLI++ GTF VN+++I DFPRFPHRG+L+DT RH+L + +I TLD MA+NKFNV H
Sbjct: 143 SQLIWRSPEGTFYVNKTDIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFH 202
Query: 738 WHIVDDQSFPYQSINFPLLSSKGSYS-LSHVYTPNDVRMVIEYARIRGIRVMPEFDTPGH 914
WH+VDD SFPY+S FP L+ KGSY+ +H+YT DV+ VIEYAR+RGIRV+ EFDTPGH
Sbjct: 203 WHLVDDSSFPYESFTFPELTKKGSYNPATHIYTAQDVKEVIEYARLRGIRVLAEFDTPGH 262
Query: 915 SRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPD 1070
+ SWG G LLTPCY SGTFGP L T F FF EISTVFPD
Sbjct: 263 TLSWGPGVPGLLTPCYSGSHPSGTFGPVNPALNNTYEFMSTFFLEISTVFPD 314
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,060,701
Number of extensions: 1234473
Number of successful extensions: 3288
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3270
Number of HSP's successfully gapped: 6
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013619
(1075 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999086.1| beta-hexosaminidase subunit beta [Sus scrofa]. 597 e-171
Alignment gi|NP_001116693.1| beta-hexosaminidase subunit alpha [Sus scrof... 302 2e-82
>ref|NP_999086.1| beta-hexosaminidase subunit beta [Sus scrofa].
Length = 531
Score = 597 bits (1539), Expect = e-171
Identities = 289/302 (95%), Positives = 291/302 (96%)
Frame = +3
Query: 168 WARDTSGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYD 347
WARDTSGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYD
Sbjct: 20 WARDTSGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYD 79
Query: 348 FIFGFYKWHQGSYQLCFGTELQQLQVHVESECDTFPSISSNESYVLHVKGPEALLRANTV 527
FIFGFYKWHQGSYQLCFGTELQQLQVHVESECDTFPSISSNESYVLHVKGPEALLRANTV
Sbjct: 80 FIFGFYKWHQGSYQLCFGTELQQLQVHVESECDTFPSISSNESYVLHVKGPEALLRANTV 139
Query: 528 WGALRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDA 707
WGALRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDA
Sbjct: 140 WGALRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDA 199
Query: 708 MAFNKFNVLHWHIVDDQSFPYQSINFPLLSSKGSYSLSHVYTPNDVRMVIEYARIRGIRV 887
MAFNKFNVLHWHIVDDQSFPYQSINF +LSSKGSYSLSHVYTPNDVRMVIEYARIRGIRV
Sbjct: 200 MAFNKFNVLHWHIVDDQSFPYQSINFGVLSSKGSYSLSHVYTPNDVRMVIEYARIRGIRV 259
Query: 888 MPEFDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFP 1067
MPEFDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGP IL T F FF+EISTVFP
Sbjct: 260 MPEFDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGPINPILNTTYNFLSKFFKEISTVFP 319
Query: 1068 DE 1073
DE
Sbjct: 320 DE 321
>ref|NP_001116693.1| beta-hexosaminidase subunit alpha [Sus scrofa].
Length = 529
Score = 302 bits (774), Expect = 2e-82
Identities = 155/299 (51%), Positives = 194/299 (64%), Gaps = 3/299 (1%)
Frame = +3
Query: 183 SGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGF 362
S + LWP P + S S + P+ F F + +S A C +L EAF+RY D +FG
Sbjct: 16 SAGRATALWPWPQYIKTSDWSYTIVPHTFQFQYHKSSAAQVGCSVLDEAFQRYRDLLFGS 75
Query: 363 YKWH-QGSYQLCFGTELQQLQVHVESE-CDTFPSISSNESYVLHVKGPEALLRANTVWGA 536
H + + +E L V V + CD PS+ S E+Y L + + L + TVWGA
Sbjct: 76 VTLHFRHRVEKWHISEKNSLVVLVVTPGCDQLPSLESVENYTLTINDEQCFLLSETVWGA 135
Query: 537 LRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAF 716
LRGLETFSQLI++ GTF +N +EI DFPRFPHRG+L+DT RH+L + +I TLD MA+
Sbjct: 136 LRGLETFSQLIWKSPEGTFYINRTEIEDFPRFPHRGLLLDTSRHYLPLASILDTLDVMAY 195
Query: 717 NKFNVLHWHIVDDQSFPYQSINFPLLSSKGSYSLS-HVYTPNDVRMVIEYARIRGIRVMP 893
NKFNV HWH+VDD SFPY+S FP L+ KGSY+ S H+YT DV+ VIEYAR+RGIRV+
Sbjct: 196 NKFNVFHWHLVDDSSFPYESFTFPDLTKKGSYNPSTHIYTARDVKEVIEYARLRGIRVLA 255
Query: 894 EFDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPD 1070
EFDTPGH++SWG G LLTPCY SGTFGP L YT F FF EIS+VFPD
Sbjct: 256 EFDTPGHTQSWGPGVPGLLTPCYSGSQPSGTFGPVNPTLNYTYEFMSTFFSEISSVFPD 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,772,136
Number of extensions: 796972
Number of successful extensions: 2251
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2243
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013619
(1075 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034552.1| beta-hexosaminidase subunit beta precursor [Mus... 411 e-115
Alignment gi|NP_034551.2| beta-hexosaminidase subunit alpha precursor [Mu... 308 4e-84
>ref|NP_034552.1| beta-hexosaminidase subunit beta precursor [Mus musculus].
Length = 536
Score = 411 bits (1056), Expect = e-115
Identities = 197/292 (67%), Positives = 236/292 (80%), Gaps = 2/292 (0%)
Frame = +3
Query: 204 LWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGFYKWHQGS 383
LWP P +V + PR L++S +F HSP S AG SC +LQEAFRRYY+++FGFYK H G
Sbjct: 35 LWPFPRSVQMFPRLLYISAEDFSIDHSPNSTAGPSCSLLQEAFRRYYNYVFGFYKRHHGP 94
Query: 384 YQLCFGTELQQLQVHV--ESECDTFPSISSNESYVLHVKGPEALLRANTVWGALRGLETF 557
+ +LQ+L V + ESEC++FPS+SS+E+Y L V+ P A+L+AN+VWGALRGLETF
Sbjct: 95 ARFRAEPQLQKLLVSITLESECESFPSLSSDETYSLLVQEPVAVLKANSVWGALRGLETF 154
Query: 558 SQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAFNKFNVLH 737
SQL+YQDS+GTFT+NES I D PRFPHRGILIDT RHFL VKTI KTLDAMAFNKFNVLH
Sbjct: 155 SQLVYQDSFGTFTINESSIADSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLH 214
Query: 738 WHIVDDQSFPYQSINFPLLSSKGSYSLSHVYTPNDVRMVIEYARIRGIRVMPEFDTPGHS 917
WHIVDDQSFPYQS FP LS+KGSYSLSHVYTPNDVRMV+EYAR+RGIRV+PEFDTPGH+
Sbjct: 215 WHIVDDQSFPYQSTTFPELSNKGSYSLSHVYTPNDVRMVLEYARLRGIRVIPEFDTPGHT 274
Query: 918 RSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPDE 1073
+SWGKGQK+LLTPCY ++ + FGP + T F FF+EIS+VFPD+
Sbjct: 275 QSWGKGQKNLLTPCYNQKTKTQVFGPVDPTVNTTYAFFNTFFKEISSVFPDQ 326
>ref|NP_034551.2| beta-hexosaminidase subunit alpha precursor [Mus musculus].
Length = 528
Score = 308 bits (790), Expect = 4e-84
Identities = 153/293 (52%), Positives = 199/293 (67%), Gaps = 4/293 (1%)
Frame = +3
Query: 204 LWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGFYKWHQGS 383
LWP P + R L PNNF F + +S A + C +L EAFRRY + +FG W + S
Sbjct: 23 LWPWPQYIQTYHRRYTLYPNNFQFRYHVSSAAQAGCVVLDEAFRRYRNLLFGSGSWPRPS 82
Query: 384 Y---QLCFGTELQQLQVHVESECDTFPSISSNESYVLHVKGPEALLRANTVWGALRGLET 554
+ Q G + + V V +EC+ FP++ S E+Y L + + LL + TVWGALRGLET
Sbjct: 83 FSNKQQTLGKNILVVSV-VTAECNEFPNLESVENYTLTINDDQCLLASETVWGALRGLET 141
Query: 555 FSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAFNKFNVL 734
FSQL+++ + GTF +N+++I DFPRFPHRG+L+DT RH+L + +I TLD MA+NKFNV
Sbjct: 142 FSQLVWKSAEGTFFINKTKIKDFPRFPHRGVLLDTSRHYLPLSSILDTLDVMAYNKFNVF 201
Query: 735 HWHIVDDQSFPYQSINFPLLSSKGSYS-LSHVYTPNDVRMVIEYARIRGIRVMPEFDTPG 911
HWH+VDD SFPY+S FP L+ KGS++ ++H+YT DV+ VIEYAR+RGIRV+ EFDTPG
Sbjct: 202 HWHLVDDSSFPYESFTFPELTRKGSFNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPG 261
Query: 912 HSRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPD 1070
H+ SWG G LLTPCY LSGTFGP L T F F EIS+VFPD
Sbjct: 262 HTLSWGPGAPGLLTPCYSGSHLSGTFGPVNPSLNSTYDFMSTLFLEISSVFPD 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,406,264
Number of extensions: 1043427
Number of successful extensions: 2651
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013619
(1075 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000512.1| beta-hexosaminidase subunit beta preproprotein ... 428 e-120
Alignment gi|NP_000511.2| beta-hexosaminidase subunit alpha preproprotein... 294 1e-79
>ref|NP_000512.1| beta-hexosaminidase subunit beta preproprotein [Homo sapiens].
Length = 556
Score = 428 bits (1101), Expect = e-120
Identities = 208/303 (68%), Positives = 237/303 (78%), Gaps = 2/303 (0%)
Frame = +3
Query: 171 ARDTSGAESLGLWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDF 350
A S LWPLP +V ++P LHL+P NF+ HSP S AG SC +L+EAFRRY+ +
Sbjct: 45 APSVSAKPGPALWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGY 104
Query: 351 IFGFYKWHQGSYQLCFGTELQQLQVHV--ESECDTFPSISSNESYVLHVKGPEALLRANT 524
IFGFYKWH + T++QQL V + +SECD FP+ISS+ESY L VK P A+L+AN
Sbjct: 105 IFGFYKWHHEPAEFQAKTQVQQLLVSITLQSECDAFPNISSDESYTLLVKEPVAVLKANR 164
Query: 525 VWGALRGLETFSQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLD 704
VWGALRGLETFSQL+YQDSYGTFT+NES IID PRF HRGILIDT RH+L VK I KTLD
Sbjct: 165 VWGALRGLETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLD 224
Query: 705 AMAFNKFNVLHWHIVDDQSFPYQSINFPLLSSKGSYSLSHVYTPNDVRMVIEYARIRGIR 884
AMAFNKFNVLHWHIVDDQSFPYQSI FP LS+KGSYSLSHVYTPNDVRMVIEYAR+RGIR
Sbjct: 225 AMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIR 284
Query: 885 VMPEFDTPGHSRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVF 1064
V+PEFDTPGH+ SWGKGQKDLLTPCY +Q +FGP L T F FF+EIS VF
Sbjct: 285 VLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVF 344
Query: 1065 PDE 1073
PD+
Sbjct: 345 PDQ 347
>ref|NP_000511.2| beta-hexosaminidase subunit alpha preproprotein [Homo sapiens].
Length = 529
Score = 294 bits (752), Expect = 1e-79
Identities = 151/292 (51%), Positives = 191/292 (65%), Gaps = 3/292 (1%)
Frame = +3
Query: 204 LWPLPFAVDISPRSLHLSPNNFFFGHSPTSKAGSSCEILQEAFRRYYDFIFGFYKWHQGS 383
LWP P S + L PNNF F + +S A C +L EAF+RY D +FG W +
Sbjct: 23 LWPWPQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPY 82
Query: 384 YQLCFGT-ELQQLQVHVESE-CDTFPSISSNESYVLHVKGPEALLRANTVWGALRGLETF 557
T E L V V + C+ P++ S E+Y L + + LL + TVWGALRGLETF
Sbjct: 83 LTGKRHTLEKNVLVVSVVTPGCNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLETF 142
Query: 558 SQLIYQDSYGTFTVNESEIIDFPRFPHRGILIDTGRHFLSVKTIFKTLDAMAFNKFNVLH 737
SQL+++ + GTF +N++EI DFPRFPHRG+L+DT RH+L + +I TLD MA+NK NV H
Sbjct: 143 SQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFH 202
Query: 738 WHIVDDQSFPYQSINFPLLSSKGSYS-LSHVYTPNDVRMVIEYARIRGIRVMPEFDTPGH 914
WH+VDD SFPY+S FP L KGSY+ ++H+YT DV+ VIEYAR+RGIRV+ EFDTPGH
Sbjct: 203 WHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGH 262
Query: 915 SRSWGKGQKDLLTPCYRKQVLSGTFGPYXXILKYTXYFPV*FFQEISTVFPD 1070
+ SWG G LLTPCY SGTFGP L T F FF E+S+VFPD
Sbjct: 263 TLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPD 314
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,180,378
Number of extensions: 1252573
Number of successful extensions: 3361
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3356
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013619
(1075 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 660 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 660 bits (333), Expect = 0.0
Identities = 336/337 (99%)
Strand = Plus / Plus
Query: 1 gattccgtgacttgcgccctccaagctccctccttcccgtctgggggtgggaagtaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85331765 gattccgtgacttgcgccctccaagctccctccttcccgtctgggggtgggaagtaggta 85331824
Query: 61 ccgagccagccccggcagacagcggtaggatggctatggagcgccacggatggaggtggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85331825 ccgagccagccccggcagacagcggtaggatggctatggagcgccacggatggaggtggc 85331884
Query: 121 tacccggcctcctggcgctgctggcggctctggtggtgccgaaagggtgggccagggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85331885 tacccggcctcctggcgctgctggcggctctggtggtgccgaaagggtgggccagggaca 85331944
Query: 181 cctctggcgcggagagcctgggtctgtggcccttgccctttgccgtggatatatccccgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85331945 cctctggcgcggagagcctgggtctgtggcccttgccctttgccgtggatatatccccgc 85332004
Query: 241 gctcgcttcacctctctcccaacaactttttcttcggccacagccccacttccaaagccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85332005 gctcgcttcacctctctcccaacaactttttcttcggccacagccccacttccaaagccg 85332064
Query: 301 gctcctcctgcgaaatccttcaggaagcgtttcggcg 337
|||||||||| ||||||||||||||||||||||||||
Sbjct: 85332065 gctcctcctgtgaaatccttcaggaagcgtttcggcg 85332101
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 337 gatattatgactttatttttggtttctacaagtggcatcaaggctcttaccagttatgtt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85336538 gatattatgactttatttttggtttctacaagtggcatcaaggctcttaccagttatgtt 85336597
Query: 397 ttggcacggaattgcagcagcttcaagtccacgtggagtcggagtgtgacactttcccca 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85336598 ttggcacggaattgcagcagcttcaagtccacgtggagtcggagtgtgacactttcccca 85336657
Query: 457 gcatctcttcaaatgagtcct 477
|||||||||||||||||||||
Sbjct: 85336658 gcatctcttcaaatgagtcct 85336678
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 802 agggaagctattctttgtctcatgtttatacaccaaatgatgttcggatggtgattgaat 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85364429 agggaagctattctttgtctcatgtttatacaccaaatgatgttcggatggtgattgaat 85364488
Query: 862 atgcccgaatacgagggattcgggtcatgccagaatttgatacccctggccattcacggt 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85364489 atgcccgaatacgagggattcgggtcatgccagaatttgatacccctggccattcacggt 85364548
Query: 922 cttggggaaaagg 934
|||||||||||||
Sbjct: 85364549 cttggggaaaagg 85364561
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 591 ttcaccgtcaatgaatccgaaattatagattttccgaggtttcctcatagaggaatttta 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85357202 ttcaccgtcaatgaatccgaaattatagattttccgaggtttcctcatagaggaatttta 85357261
Query: 651 attgacacagggcgacacttcctgtcagtaaagaccatttttaaaactctgg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85357262 attgacacagggcgacacttcctgtcagtaaagaccatttttaaaactctgg 85357313
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 701 ggatgccatggcttttaataagtttaatgttctccactggcacatagttgatgaccagtc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85363466 ggatgccatggcttttaataagtttaatgttctccactggcacatagttgatgaccagtc 85363525
Query: 761 tttcccttatcagagcatcaattttcctctactaagcagtaagg 804
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85363526 tttcccttatcagagcatcaattttcctctactaagcagtaagg 85363569
Score = 168 bits (85), Expect = 4e-39
Identities = 134/146 (91%), Gaps = 4/146 (2%)
Strand = Plus / Plus
Query: 932 aggccagaaagacctcctgacgccatgttatagaaaacaagttctctctgggacttttgg 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85366422 aggccagaaagacctcctgacgccatgttatagaaaacaagttctctctgggacttttgg 85366481
Query: 992 accctatnaccntattttgaaatac-acttantacttccctgtctaattttttc-aagaa 1049
||| | ||| ||||||| ||||| ||||| |||| ||||||||| |||||| |||||
Sbjct: 85366482 acctattaaccctattttg-aatacaacttataactt-cctgtctaaatttttcaaagaa 85366539
Query: 1050 attagtaccgtgtttccagatgaatt 1075
||||||||||||||||||||||||||
Sbjct: 85366540 attagtaccgtgtttccagatgaatt 85366565
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 478 atgttttacatgtaaaaggaccagaggccttgctcagggccaacacagtttggggagctt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85340389 atgttttacatgtaaaaggaccagaggccttgctcagggccaacacagtttggggagctt 85340448
Query: 538 tgcgaggt 545
||||||||
Sbjct: 85340449 tgcgaggt 85340456
Score = 101 bits (51), Expect = 8e-19
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 536 tttgcgaggtttagagacctttagccagttaatttatcaagattcttatgggact 590
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85356883 tttgctaggtttagagacctttagccagttaatttatcaagattcttatgggact 85356937
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,119,412
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 8
Length of query: 1075
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1054
Effective length of database: 2,808,413,156
Effective search space: 2960067466424
Effective search space used: 2960067466424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)