Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013630
(985 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039643.1| protein phosphatase 1 regulatory subunit 15A... 232 5e-62
>ref|NP_001039643.1| protein phosphatase 1 regulatory subunit 15A [Bos taurus].
Length = 670
Score = 232 bits (591), Expect(2) = 5e-62
Identities = 127/193 (65%), Positives = 140/193 (72%), Gaps = 13/193 (6%)
Frame = +2
Query: 233 MAPGQVPHQPAPWRATHS-FLLSPLMGLLSRAWSHLRGPGPPEPWLVEAVTRADAGEPGL 409
MAPGQ+PHQPAPWR TH FLLSPLMGLLSRAWS LR PGPPEPWLVEAVT AD G GL
Sbjct: 1 MAPGQMPHQPAPWRGTHPLFLLSPLMGLLSRAWSLLRAPGPPEPWLVEAVTEADQGGAGL 60
Query: 410 EGDTKASLAT-------QPQEEPGERRATEEDEEASWGSYPDLEAKCLLLETWGLSDDE- 565
E + KASLAT PQEE + A EED EAS G+ P+LEAK L E WGLSDD+
Sbjct: 61 EDEAKASLATYHALWGRHPQEETKDSGAAEEDREASPGACPNLEAKHSLPEAWGLSDDDD 120
Query: 566 --RGGEAATRVPREPGSEFMDGLPAPLSPSLLMRAQQDVPGEEESQEEAVT--EDKDIIT 733
GGE AT VPRE EFMDG PAPL SLL+R+ D+PGEEES+EEAVT ++
Sbjct: 121 EKYGGEEATGVPREQ-KEFMDGQPAPLPLSLLIRSLPDLPGEEESKEEAVTGGGGNEVTA 179
Query: 734 FAFPLSHWEGCPG 772
F+FPLSHWE CPG
Sbjct: 180 FSFPLSHWECCPG 192
Score = 25.0 bits (53), Expect(2) = 5e-62
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +1
Query: 841 PLSSRTQPRSWVCCAVERTPRGRKNREQSRPEGLPPAPH 957
P S + R+W CC+ + + K+++ + + P PH
Sbjct: 231 PSSVGSHLRAWECCSGKESEEEEKDKQAEKGDA-DPGPH 268
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,979,896
Number of extensions: 1536946
Number of successful extensions: 11587
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11050
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013630
(985 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533626.2| PREDICTED: similar to protein phosphatase 1, re... 210 2e-54
>ref|XP_533626.2| PREDICTED: similar to protein phosphatase 1, regulatory subunit 15A
[Canis familiaris].
Length = 673
Score = 210 bits (534), Expect = 2e-54
Identities = 128/263 (48%), Positives = 155/263 (58%), Gaps = 15/263 (5%)
Frame = +2
Query: 233 MAPGQVPHQPAPWRATHSF-LLSPLMGLLSRAWSHLRGPGPPEPWLVEAVTRADAGEPGL 409
MAPGQVPHQ APWR T+ F LLSPLMGLLSRAWSHLRGPG PEPW EAVT+ D G+PGL
Sbjct: 1 MAPGQVPHQSAPWRDTYPFFLLSPLMGLLSRAWSHLRGPGSPEPWPWEAVTKTDRGKPGL 60
Query: 410 EGDTKASLATQP-------QEEPGERRATEEDEEASWGSYPDLEAKCLLLETWGLSD--- 559
E + K L +EE G+ A++E+ EA WG+ +L+A L+ GLSD
Sbjct: 61 EREAKTFLVPHHPLWGRHFEEEIGDSGASDENGEAFWGARHNLKANSSSLKAGGLSDNED 120
Query: 560 DERGGE-AATRVPREPGSEFMDGLPAPLSPSLLMRAQQDVPGEEESQEEAVTEDKDIITF 736
+E GGE AAT VP+E SEF+DG PAPLSPSLL+R QD P EE+S+E EDK ++ F
Sbjct: 121 EEYGGEQAATSVPKEQESEFLDGQPAPLSPSLLIRTPQD-PSEEKSEEGGAAEDKVVMFF 179
Query: 737 AFPLSHWEGCPGVAXXXXXXAGKTVNKEXXXXXXXXXXXXXXXXXXXXXQWKGPP---EE 907
+FP SHWE CPG G+ +NKE + EE
Sbjct: 180 SFPPSHWECCPG----EEKEEGEAINKEASRTPIFPLSPRSKPKTRVYCPREEEDKAIEE 235
Query: 908 ERTENKAAPKAFHLPLIPWFPPG 976
ERTE+K A K+ F PG
Sbjct: 236 ERTEDKEATKSSISSSFSGFCPG 258
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,000,621
Number of extensions: 1596467
Number of successful extensions: 12191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11673
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013630
(985 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127323.1| PREDICTED: protein phosphatase 1 regulatory ... 405 e-113
>ref|XP_003127323.1| PREDICTED: protein phosphatase 1 regulatory subunit 15A-like [Sus
scrofa].
Length = 654
Score = 405 bits (1040), Expect = e-113
Identities = 201/240 (83%), Positives = 203/240 (84%)
Frame = +2
Query: 233 MAPGQVPHQPAPWRATHSFLLSPLMGLLSRAWSHLRGPGPPEPWLVEAVTRADAGEPGLE 412
MAPGQVPHQPAPWRATHSFLLSPLMGLLSRAWSHLRGPGPPEPWLVEAVTRADAGEPGLE
Sbjct: 1 MAPGQVPHQPAPWRATHSFLLSPLMGLLSRAWSHLRGPGPPEPWLVEAVTRADAGEPGLE 60
Query: 413 GDTKASLATQPQEEPGERRATEEDEEASWGSYPDLEAKCLLLETWGLSDDERGGEAATRV 592
GDTKASLATQPQEEPGERRATEEDEEASWGSYPDLEAKCLLLETWGLSDDERGGEAATRV
Sbjct: 61 GDTKASLATQPQEEPGERRATEEDEEASWGSYPDLEAKCLLLETWGLSDDERGGEAATRV 120
Query: 593 PREPGSEFMDGLPAPLSPSLLMRAQQDVPGEEESQEEAVTEDKDIITFAFPLSHWEGCPG 772
PREPGSEFMDGLPAPLSPSLLMRAQQDVPGEEESQEEAVTEDKDIITFAFPLSHWEGCPG
Sbjct: 121 PREPGSEFMDGLPAPLSPSLLMRAQQDVPGEEESQEEAVTEDKDIITFAFPLSHWEGCPG 180
Query: 773 VAXXXXXXAGKTVNKEXXXXXXXXXXXXXXXXXXXXXQWKGPPEEERTENKAAPKAFHLP 952
VA AG+ VNKE +G EEERTENKAA K P
Sbjct: 181 VAVEEEEEAGEAVNKEAPRTSTSPSAPGPQPRSWVCCAVEGATEEERTENKAATKPSTCP 240
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,536,734
Number of extensions: 1002981
Number of successful extensions: 7689
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7253
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013630
(985 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032680.1| protein phosphatase 1 regulatory subunit 15A [M... 87 2e-17
>ref|NP_032680.1| protein phosphatase 1 regulatory subunit 15A [Mus musculus].
Length = 657
Score = 87.4 bits (215), Expect = 2e-17
Identities = 74/182 (40%), Positives = 89/182 (48%), Gaps = 3/182 (1%)
Frame = +2
Query: 233 MAPGQVPHQPAPWRATHSF-LLSPLMGLLSRAWSHLRGPGPPEPWLVEAVTRADAGE-PG 406
MAP P WR H+F LLSPLMGLLSRAWS LRGP PE WL + VT AD E
Sbjct: 1 MAPSPRPQHVLHWRDAHNFYLLSPLMGLLSRAWSRLRGPEVPEAWLAKTVTGADQIEAAA 60
Query: 407 LEGDTKASLATQPQEEPGERRATEEDEEASWGSYPDLEAKCLLLETWGLSD-DERGGEAA 583
L T S P E E + E+ + A +EA+ ETWGLS+ DE +
Sbjct: 61 LLTPTPVSGNLLPHGETEESGSPEQSQAAQ--RLCLVEAESSPPETWGLSNVDEYNAKPG 118
Query: 584 TRVPREPGSEFMDGLPAPLSPSLLMRAQQDVPGEEESQEEAVTEDKDIITFAFPLSHWEG 763
RE E G A L P+ L A + + GE ++EE V E A+P S EG
Sbjct: 119 QDDLREKEMERTAG-KATLQPAGLQGADKRL-GEVVAREEGVAEP------AYPTSQLEG 170
Query: 764 CP 769
P
Sbjct: 171 GP 172
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,383,091
Number of extensions: 1248160
Number of successful extensions: 8825
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8316
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013630
(985 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055145.3| protein phosphatase 1 regulatory subunit 15A [H... 167 2e-41
>ref|NP_055145.3| protein phosphatase 1 regulatory subunit 15A [Homo sapiens].
Length = 674
Score = 167 bits (422), Expect = 2e-41
Identities = 103/193 (53%), Positives = 119/193 (61%), Gaps = 12/193 (6%)
Frame = +2
Query: 233 MAPGQVPHQPAPWRATHSF-LLSPLMGLLSRAWSHLRGPGPPEPWLVEAVTRADAGEPGL 409
MAPGQ PHQ PWR H F LLSP+MGLLSRAWS LRG GP EPWLVEAV A E GL
Sbjct: 1 MAPGQAPHQATPWRDAHPFFLLSPVMGLLSRAWSRLRGLGPLEPWLVEAVKGAALVEAGL 60
Query: 410 EGDTKASLATQPQEEPGERRATEEDEEASWGSYPD-----LEAKCLLLETWGLSDDERG- 571
EG+ + LA P G R EE+ E S G D L+ L E WGL DD+ G
Sbjct: 61 EGEARTPLAI-PHTPWGRR--PEEEAEDSGGPGEDRETLGLKTSSSLPEAWGLLDDDDGM 117
Query: 572 -GE-AATRVPREPGSEFMDGLPAPLSPSLLMRAQQDV---PGEEESQEEAVTEDKDIITF 736
GE AT VPR GS+F DG APLSPSLL+R Q PGEE+++EE V E++ + F
Sbjct: 118 YGEREATSVPRGQGSQFADGQRAPLSPSLLIRTLQGSDKNPGEEKAEEEGVAEEEGVNKF 177
Query: 737 AFPLSHWEGCPGV 775
++P SH E CP V
Sbjct: 178 SYPPSHRECCPAV 190
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,768,816
Number of extensions: 1532312
Number of successful extensions: 11308
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10768
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013630
(985 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1261 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1261 bits (636), Expect = 0.0
Identities = 735/770 (95%), Gaps = 3/770 (0%)
Strand = Plus / Plus
Query: 217 tcccgagctgacaaagatggccccaggccaagtgccccaccagcctgccccctggagggc 276
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49920356 tccccagcagacaaagatggccccaggccaagtgccccaccagcctgccccctggagggc 49920415
Query: 277 tacccactcctttctcctgtccccgctgatgggccttctcagccgggcctggagccacct 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49920416 tacccactcctttctcctgtccccgctgatgggccttctcagccgggcctggagccacct 49920475
Query: 337 gaggggcccaggccctccagagccctggctagtggaggcagtaaccagggcagacgcggg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49920476 gaggggcccaggccctccagagccctggctagtggaggcagtaaccagggcagacgcggg 49920535
Query: 397 agaacctggcctggagggagacacaaaggcttctctggccacccagccacaagaagagcc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49920536 agaacctggcctggagggagacacaaaggcttctctggccacccagccacaagaagagcc 49920595
Query: 457 tggagagaggagagcaactgaggaggatgaagaagcatcctgggggagctaccctgacct 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49920596 tggagagaggagagcaactgaggaggatgaagaagcatcctgggggagctaccctgacct 49920655
Query: 517 ggaagccaagtgtttgcttttggaaacctggggactttcagatgatgagcgtggtgggga 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49920656 ggaagccaagtgtttgcttttggaaacctggggactttcagatgatgagcgtggtgggga 49920715
Query: 577 agcagcaacccgcgtccctagagagcccggaagtgaatttatggatggccttcctgctcc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49920716 agcagcaacccgcgtccctagagagcccggaagtgaatttatggatggccttcctgctcc 49920775
Query: 637 cctgtcccccagccttctgatgagagcccagcaggacgttcctggggaggaagaatctca 696
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 49920776 cctgtcccccagccttctgatgagagcccagcaggatgttcctggggaggaagaatctca 49920835
Query: 697 ggaagaagcagttactgaagataaagacataatcaccttcgcttttcctctgtcacactg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49920836 ggaagaagcagttactgaagataaagacataatcaccttcgcttttcctctgtcacactg 49920895
Query: 757 ggagggttgtccaggtgtggcantnnnnnnnnnnnnnnnnnctgggaaaactgtaaataa 816
|||||||||||||||||||||| | |||| || ||||||||||
Sbjct: 49920896 ggagggttgtccaggtgtggcagtggaggaggaggaggaggctggagaagctgtaaataa 49920955
Query: 817 agaagctcctagaacatctacctccccctcagctccagga-cccagccccgctcctgggt 875
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 49920956 agaagctcctagaacatctacctccccctcagctccaggaccccagccccgctcctgggt 49921015
Query: 876 gtgctgcgcagtggaaaggaccccccgaggaagaaagaacagagaacaaagccgccccga 935
|||||||||||||| ||||| || | |||||||||||||||||||||||||| ||| |||
Sbjct: 49921016 gtgctgcgcagtgg-aaggagccacagaggaagaaagaacagagaacaaagcagccacga 49921074
Query: 936 aggccttccacctgcccctcatcccttggttcccacccgggggcctggga 985
| ||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 49921075 a-gccctccacctgcccctcatccctcggttcccaccccggggcctggga 49921123
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 2 acgtcctaagtggctagccggtgtgtttgtatttgtttctccgtgtgaccttgcgcccat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49919426 acgtcctaagtggctagccggtgtgtttgtatttgtttctccgtgtgaccttgcgcccat 49919485
Query: 62 tcgtcgtgacaacgcttgcagcagccggtgacaatttgagtccccgagcccgacgccgga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49919486 tcgtcgtgacaacgcttgcagcagccggtgacaatttgagtccccgagcccgacgccgga 49919545
Query: 122 gggcgaaatgaacgctctggactcccgagctgtccggaactgcgatcgcttgtggcagcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49919546 gggcgaaatgaacgctctggactcccgagctgtccggaactgcgatcgcttgtggcagcc 49919605
Query: 182 ccagccgacgctcctgcccccagggtgacgcgcaatcccgagctg 226
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49919606 ccagccgacgctcctgcccccagggtgacgcgcaatcccgagctg 49919650
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,761,590
Number of extensions: 258
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 3
Length of query: 985
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 964
Effective length of database: 2,808,413,156
Effective search space: 2707310282384
Effective search space used: 2707310282384
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)