Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013634
(1529 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178189.1| chromatin modifying protein 1A-like [Bos tau... 302 5e-82
Alignment gi|NP_001014904.1| charged multivesicular body protein 1b [Bos ... 171 1e-42
Alignment gi|NP_001029722.1| charged multivesicular body protein 2a [Bos ... 75 2e-13
>ref|NP_001178189.1| chromatin modifying protein 1A-like [Bos taurus].
Length = 196
Score = 302 bits (774), Expect = 5e-82
Identities = 162/186 (87%), Positives = 165/186 (88%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
MDDTLFQLKFT VKKALQQKNVECARVYAENAIRKKNEGV
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMD+FEQQVQ
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDRFEQQVQ 120
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 644
NLDVHT+VMEDSMSSATTLTTPQEQVDSLI+QIAEENGLEVLDQLSQLPEGASAVGESSV
Sbjct: 121 NLDVHTSVMEDSMSSATTLTTPQEQVDSLILQIAEENGLEVLDQLSQLPEGASAVGESSV 180
Query: 645 RSQEDQ 662
RSQEDQ
Sbjct: 181 RSQEDQ 186
>ref|NP_001014904.1| charged multivesicular body protein 1b [Bos taurus].
Length = 199
Score = 171 bits (434), Expect = 1e-42
Identities = 94/187 (50%), Positives = 128/187 (68%), Gaps = 1/187 (0%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
M+ LF LKF +KKA+Q+ N+E AR++AENAIR+KN+ V
Sbjct: 4 MEKHLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
N+LRM++RVDAVA++VQTAVTM VTK+MA V K++D L TM+L+K+SA+MDKFE Q +
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG-ASAVGESS 641
LDV T MED+MSS TTLTTPQ QVD L+ ++A+E G LD +LP+G +VG S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAG---LDLNMELPQGQTGSVGTSV 180
Query: 642 VRSQEDQ 662
+++D+
Sbjct: 181 ASAEQDE 187
>ref|NP_001029722.1| charged multivesicular body protein 2a [Bos taurus].
Length = 222
Score = 74.7 bits (182), Expect = 2e-13
Identities = 37/137 (27%), Positives = 77/137 (56%)
Frame = +3
Query: 201 VKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQV 380
+KK +Q ++ R+ A++ +R + ++ M + + AV+ K+QT + + + M V
Sbjct: 47 IKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGV 106
Query: 381 TKALDRALSTMDLQKVSAVMDKFEQQVQNLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQ 560
TKA+ + L ++ +M +FE+Q + +D+ +M D++ A +E+ D+++ Q
Sbjct: 107 TKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVAQ 166
Query: 561 IAEENGLEVLDQLSQLP 611
+ +E GL + D+LS LP
Sbjct: 167 VLDELGLSLTDELSNLP 183
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,773,748
Number of extensions: 1749973
Number of successful extensions: 13135
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12950
Number of HSP's successfully gapped: 3
Length of query: 509
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 402
Effective length of database: 14,140,958
Effective search space: 5684665116
Effective search space used: 5684665116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013634
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013634
(1529 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546776.2| PREDICTED: similar to Chromatin modifying prote... 303 2e-82
Alignment gi|XP_860196.1| PREDICTED: similar to procollagen (type III) N-... 198 1e-50
Alignment gi|XP_533565.1| PREDICTED: similar to putative breast adenocarc... 76 1e-13
Alignment gi|XP_850536.1| PREDICTED: similar to putative breast adenocarc... 76 1e-13
Alignment gi|XP_861688.1| PREDICTED: similar to putative breast adenocarc... 62 1e-09
>ref|XP_546776.2| PREDICTED: similar to Chromatin modifying protein 1 (Charged
multivesicular body protein 1) (CHMP1) isoform 1 [Canis
familiaris].
Length = 196
Score = 303 bits (777), Expect = 2e-82
Identities = 163/186 (87%), Positives = 165/186 (88%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
MDDTLFQLKFT VKKALQQKNVECARVYAENAIRKKNEGV
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMD+FEQQVQ
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDRFEQQVQ 120
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 644
NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQL+QLPEGASAVGESSV
Sbjct: 121 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLNQLPEGASAVGESSV 180
Query: 645 RSQEDQ 662
RSQEDQ
Sbjct: 181 RSQEDQ 186
>ref|XP_860196.1| PREDICTED: similar to procollagen (type III) N-endopeptidase
isoform 2 [Canis familiaris].
Length = 189
Score = 198 bits (503), Expect = 1e-50
Identities = 106/128 (82%), Positives = 107/128 (83%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
MDDTLFQLKFT VKKALQQKNVECARVYAENAIRKKNEGV
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMD+FEQQVQ
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDRFEQQVQ 120
Query: 465 NLDVHTAV 488
NLDVHTAV
Sbjct: 121 NLDVHTAV 128
>ref|XP_533565.1| PREDICTED: similar to putative breast adenocarcinoma marker isoform
1 [Canis familiaris].
Length = 222
Score = 75.9 bits (185), Expect = 1e-13
Identities = 40/153 (26%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Frame = +3
Query: 201 VKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQV 380
+KK +Q ++ R+ A++ +R + ++ M + + AV+ K+QT + + + M V
Sbjct: 47 IKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGV 106
Query: 381 TKALDRALSTMDLQKVSAVMDKFEQQVQNLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQ 560
TKA+ + L ++ +M +FE+Q + +D+ +M D++ A +E+ D+++ Q
Sbjct: 107 TKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQ 166
Query: 561 IAEENGLEVLDQLSQLPE--GASAVGESSVRSQ 653
+ +E GL + D+LS LP G+ +V S +++
Sbjct: 167 VLDELGLSLTDELSNLPSTGGSLSVAASGKKAE 199
>ref|XP_850536.1| PREDICTED: similar to putative breast adenocarcinoma marker isoform
2 [Canis familiaris].
Length = 222
Score = 75.9 bits (185), Expect = 1e-13
Identities = 40/153 (26%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Frame = +3
Query: 201 VKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQV 380
+KK +Q ++ R+ A++ +R + ++ M + + AV+ K+QT + + + M V
Sbjct: 47 IKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGV 106
Query: 381 TKALDRALSTMDLQKVSAVMDKFEQQVQNLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQ 560
TKA+ + L ++ +M +FE+Q + +D+ +M D++ A +E+ D+++ Q
Sbjct: 107 TKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQ 166
Query: 561 IAEENGLEVLDQLSQLPE--GASAVGESSVRSQ 653
+ +E GL + D+LS LP G+ +V S +++
Sbjct: 167 VLDELGLSLTDELSNLPSTGGSLSVAASGKKAE 199
>ref|XP_861688.1| PREDICTED: similar to putative breast adenocarcinoma marker isoform
3 [Canis familiaris].
Length = 204
Score = 62.4 bits (150), Expect = 1e-09
Identities = 37/148 (25%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = +3
Query: 216 QQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALD 395
Q+ + ++ A+ K ++ +R+ ++ AV+ K+QT + + + M VTKA+
Sbjct: 34 QKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLAVSLKIQTLKSNNSMAQAMKGVTKAMG 93
Query: 396 RALSTMDLQKVSAVMDKFEQQVQNLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEEN 575
+ L ++ +M +FE+Q + +D+ +M D++ A +E+ D+++ Q+ +E
Sbjct: 94 TMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDEL 153
Query: 576 GLEVLDQLSQLPE--GASAVGESSVRSQ 653
GL + D+LS LP G+ +V S +++
Sbjct: 154 GLSLTDELSNLPSTGGSLSVAASGKKAE 181
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,104,339
Number of extensions: 1796606
Number of successful extensions: 13115
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 12901
Number of HSP's successfully gapped: 5
Length of query: 509
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 402
Effective length of database: 15,307,552
Effective search space: 6153635904
Effective search space used: 6153635904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013634
(1529 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230289.1| chromatin modifying protein 1A [Sus scrofa]. 306 3e-83
Alignment gi|XP_003356398.1| PREDICTED: charged multivesicular body prote... 171 8e-43
Alignment gi|XP_003361783.1| PREDICTED: charged multivesicular body prote... 70 4e-12
>ref|NP_001230289.1| chromatin modifying protein 1A [Sus scrofa].
Length = 196
Score = 306 bits (783), Expect = 3e-83
Identities = 165/186 (88%), Positives = 165/186 (88%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
MDDTLFQLKFT VKKALQQKNVECARVYAENAIRKKNEGV
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 120
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 644
NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV
Sbjct: 121 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 180
Query: 645 RSQEDQ 662
RSQEDQ
Sbjct: 181 RSQEDQ 186
>ref|XP_003356398.1| PREDICTED: charged multivesicular body protein 1b-like [Sus
scrofa].
Length = 199
Score = 171 bits (434), Expect = 8e-43
Identities = 94/187 (50%), Positives = 128/187 (68%), Gaps = 1/187 (0%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
M+ LF LKF +KKA+Q+ N+E AR++AENAIR+KN+ V
Sbjct: 4 MEKHLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
N+LRM++RVDAVA++VQTAVTM VTK+MA V K++D L TM+L+K+SA+MDKFE Q +
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG-ASAVGESS 641
LDV T MED+MSS TTLTTPQ QVD L+ ++A+E G LD +LP+G +VG S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAG---LDLNMELPQGQTGSVGTSV 180
Query: 642 VRSQEDQ 662
+++D+
Sbjct: 181 ASAEQDE 187
>ref|XP_003361783.1| PREDICTED: charged multivesicular body protein 2a-like, partial
[Sus scrofa].
Length = 177
Score = 69.7 bits (169), Expect = 4e-12
Identities = 37/143 (25%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Frame = +3
Query: 231 ECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALST 410
+ R+ A++ +R + ++ M + + AV+ K+QT + + + M VTKA+
Sbjct: 12 DAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQ 71
Query: 411 MDLQKVSAVMDKFEQQVQNLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVL 590
+ L ++ +M +FE+Q + +D+ +M D++ A +E+ D+++ Q+ +E GL +
Sbjct: 72 LKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVAQVLDELGLSLT 131
Query: 591 DQLSQLPE--GASAVGESSVRSQ 653
D+LS LP G+ +V S +++
Sbjct: 132 DELSNLPSTGGSLSVAASGKKAE 154
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,789,150
Number of extensions: 1139899
Number of successful extensions: 8425
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8300
Number of HSP's successfully gapped: 3
Length of query: 509
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 406
Effective length of database: 8,779,541
Effective search space: 3564493646
Effective search space used: 3564493646
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013634
(1529 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663581.1| charged multivesicular body protein 1a [Mus mus... 297 1e-80
Alignment gi|NP_077152.1| charged multivesicular body protein 1b-1 [Mus m... 173 4e-43
Alignment gi|NP_080197.2| charged multivesicular body protein 1b-2 [Mus m... 169 4e-42
Alignment gi|NP_081161.1| charged multivesicular body protein 2a [Mus mus... 75 2e-13
>ref|NP_663581.1| charged multivesicular body protein 1a [Mus musculus].
Length = 196
Score = 297 bits (761), Expect = 1e-80
Identities = 159/186 (85%), Positives = 164/186 (88%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
MDDTLFQLKFT VKKALQQKNVECARVYAENAIRKKNEGV
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALD+ALS MDLQKVSAVMD+FEQQVQ
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQ 120
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 644
NLDVHT+VMEDS+SSATTLTTPQEQVDSLI+QIAEENGLEVLDQLSQLPEGASAVGESSV
Sbjct: 121 NLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSV 180
Query: 645 RSQEDQ 662
RSQEDQ
Sbjct: 181 RSQEDQ 186
>ref|NP_077152.1| charged multivesicular body protein 1b-1 [Mus musculus].
Length = 199
Score = 173 bits (438), Expect = 4e-43
Identities = 94/187 (50%), Positives = 129/187 (68%), Gaps = 1/187 (0%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
M+ LF LKF +KKA+Q+ N+E AR++AENAIR+KN+GV
Sbjct: 4 MEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGV 63
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
N+LRM++RVDAVA++VQTAVTM VTK+MA V K++D L +M+L+K+SA+MDKFE Q +
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG-ASAVGESS 641
LDV T MED+MSS TTLTTPQ QVD L+ ++A+E G LD +LP+G +VG S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAG---LDLNMELPQGQTGSVGTSV 180
Query: 642 VRSQEDQ 662
+++D+
Sbjct: 181 ASAEQDE 187
>ref|NP_080197.2| charged multivesicular body protein 1b-2 [Mus musculus].
Length = 199
Score = 169 bits (429), Expect = 4e-42
Identities = 92/187 (49%), Positives = 127/187 (67%), Gaps = 1/187 (0%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
M+ LF LKF +KKA+Q+ N E AR++AENAIR+KN+ +
Sbjct: 4 MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
N+LRM++RVDAVA++VQTAVTM VTK+MA V K++D L +M+L+K+SA+MDKFE Q +
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFE 123
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG-ASAVGESS 641
LDV T MED+MSS TTLTTPQ QVD L+ ++A+E G LD +LP+G +VG S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAG---LDLNMELPQGQTGSVGASV 180
Query: 642 VRSQEDQ 662
+++D+
Sbjct: 181 ASTEQDE 187
>ref|NP_081161.1| charged multivesicular body protein 2a [Mus musculus].
Length = 222
Score = 74.7 bits (182), Expect = 2e-13
Identities = 37/137 (27%), Positives = 77/137 (56%)
Frame = +3
Query: 201 VKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQV 380
+KK +Q ++ R+ A++ +R + ++ M + + AV+ K+QT + + + M V
Sbjct: 47 IKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGV 106
Query: 381 TKALDRALSTMDLQKVSAVMDKFEQQVQNLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQ 560
TKA+ + L ++ +M +FE+Q + +D+ +M D++ A +E+ D+++ Q
Sbjct: 107 TKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQ 166
Query: 561 IAEENGLEVLDQLSQLP 611
+ +E GL + D+LS LP
Sbjct: 167 VLDELGLSLTDELSNLP 183
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,242,176
Number of extensions: 1411138
Number of successful extensions: 9805
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9636
Number of HSP's successfully gapped: 4
Length of query: 509
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 403
Effective length of database: 12,433,743
Effective search space: 5010798429
Effective search space used: 5010798429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013634
(1529 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002759.2| charged multivesicular body protein 1a isoform ... 298 7e-81
Alignment gi|NP_065145.2| charged multivesicular body protein 1b [Homo sa... 172 7e-43
Alignment gi|NP_001076783.1| charged multivesicular body protein 1a isofo... 80 5e-15
Alignment gi|NP_940818.1| charged multivesicular body protein 2a [Homo sa... 75 2e-13
Alignment gi|NP_055268.1| charged multivesicular body protein 2a [Homo sa... 75 2e-13
>ref|NP_002759.2| charged multivesicular body protein 1a isoform 2 [Homo sapiens].
Length = 196
Score = 298 bits (764), Expect = 7e-81
Identities = 160/186 (86%), Positives = 164/186 (88%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
MDDTLFQLKFT VKKAL QKNVECARVYAENAIRKKNEGV
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV 60
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALD+ALSTMDLQKVS+VMD+FEQQVQ
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ 120
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 644
NLDVHT+VMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV
Sbjct: 121 NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 180
Query: 645 RSQEDQ 662
RSQEDQ
Sbjct: 181 RSQEDQ 186
>ref|NP_065145.2| charged multivesicular body protein 1b [Homo sapiens].
Length = 199
Score = 172 bits (436), Expect = 7e-43
Identities = 94/187 (50%), Positives = 128/187 (68%), Gaps = 1/187 (0%)
Frame = +3
Query: 105 MDDTLFQLKFTXXXXXXXXXXXXXXXXXXXXXVKKALQQKNVECARVYAENAIRKKNEGV 284
M+ LF LKF +KKA+Q+ N+E AR++AENAIR+KN+ V
Sbjct: 4 MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 285 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDRALSTMDLQKVSAVMDKFEQQVQ 464
N+LRM++RVDAVA++VQTAVTM VTK+MA V K++D L TM+L+K+SA+MDKFE Q +
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123
Query: 465 NLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG-ASAVGESS 641
LDV T MED+MSS TTLTTPQ QVD L+ ++A+E G LD +LP+G +VG S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAG---LDLNMELPQGQTGSVGTSV 180
Query: 642 VRSQEDQ 662
+++D+
Sbjct: 181 ASAEQDE 187
>ref|NP_001076783.1| charged multivesicular body protein 1a isoform 1 [Homo sapiens].
Length = 240
Score = 80.1 bits (196), Expect = 5e-15
Identities = 66/187 (35%), Positives = 69/187 (36%), Gaps = 6/187 (3%)
Frame = +2
Query: 233 VCAGVRRERHSQEE*GCELAAHGVPRGCGGLQXXXXXXXXXXXXXXXXXXQSPGPRAQHH 412
VC V RERH QEE CELA+ GVPR GLQ QSPG +HH
Sbjct: 37 VCPCVCRERHPQEERRCELASDGVPRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHH 96
Query: 413 GPAEGLCGDG*V*AAGAEPGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 592
GPAEGL DG V AAGAEPG
Sbjct: 97 GPAEGLLSDGQVRAAGAEPGRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAG 156
Query: 593 XXXXXXXXXXXXXXXXXXXXGGPAVSEVGCPEELAEPGDTASQERQGRTPAPPPP----- 757
GGPAV+EVG EELA P R APP P
Sbjct: 157 PAQPAARGRLCRGRELCAQPGGPAVTEVGRLEELAVP----------RRCAPPLPRDVLE 206
Query: 758 -SCFLPT 775
SC LPT
Sbjct: 207 GSCPLPT 213
>ref|NP_940818.1| charged multivesicular body protein 2a [Homo sapiens].
Length = 222
Score = 74.7 bits (182), Expect = 2e-13
Identities = 37/137 (27%), Positives = 77/137 (56%)
Frame = +3
Query: 201 VKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQV 380
+KK +Q ++ R+ A++ +R + ++ M + + AV+ K+QT + + + M V
Sbjct: 47 IKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGV 106
Query: 381 TKALDRALSTMDLQKVSAVMDKFEQQVQNLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQ 560
TKA+ + L ++ +M +FE+Q + +D+ +M D++ A +E+ D+++ Q
Sbjct: 107 TKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQ 166
Query: 561 IAEENGLEVLDQLSQLP 611
+ +E GL + D+LS LP
Sbjct: 167 VLDELGLSLTDELSNLP 183
>ref|NP_055268.1| charged multivesicular body protein 2a [Homo sapiens].
Length = 222
Score = 74.7 bits (182), Expect = 2e-13
Identities = 37/137 (27%), Positives = 77/137 (56%)
Frame = +3
Query: 201 VKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQV 380
+KK +Q ++ R+ A++ +R + ++ M + + AV+ K+QT + + + M V
Sbjct: 47 IKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGV 106
Query: 381 TKALDRALSTMDLQKVSAVMDKFEQQVQNLDVHTAVMEDSMSSATTLTTPQEQVDSLIMQ 560
TKA+ + L ++ +M +FE+Q + +D+ +M D++ A +E+ D+++ Q
Sbjct: 107 TKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQ 166
Query: 561 IAEENGLEVLDQLSQLP 611
+ +E GL + D+LS LP
Sbjct: 167 VLDELGLSLTDELSNLP 183
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,655,078
Number of extensions: 1730479
Number of successful extensions: 12027
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 11861
Number of HSP's successfully gapped: 5
Length of query: 509
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 402
Effective length of database: 14,770,016
Effective search space: 5937546432
Effective search space used: 5937546432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013634
(1529 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1556 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1556 bits (785), Expect = 0.0
Identities = 823/833 (98%), Gaps = 2/833 (0%)
Strand = Plus / Plus
Query: 672 aggttggctgccctgaggaactagcggagcccggcgacaccgcctcgcaggaaaggcagg 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484153 aggttggctgccctgaggaactagcggagcccggcgacaccgcctcgcaggaaaggcagg 484212
Query: 732 gcaggacgcctgcgccccctcccccgtcttgcttcctgcccaccctggggcagcagctgt 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484213 gcaggacgcctgcgccccctcccccgtcttgcttcctgcccaccctggggcagcagctgt 484272
Query: 792 cagcctggctgctctcagcccctcatctgccaggtctggggactcttcctcctctcagcg 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484273 cagcctggctgctctcagcccctcatctgccaggtctggggactcttcctcctctcagcg 484332
Query: 852 cgggcgtgggtctgtgtcctggtgggggactttgcacaagccgcagactctgggtaattt 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484333 cgggcgtgggtctgtgtcctggtgggggactttgcacaagccgcagactctgggtaattt 484392
Query: 912 ctgtgactctgggccaaccggctgggggatccgcaggcaccattcatgcgccttcctcca 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484393 ctgtgactctgggccaaccggctgggggatccgcaggcaccattcatgcgccttcctcca 484452
Query: 972 aggagttgactggctctggccggtggcggcggccacacggctgtgggggcctccaggctc 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484453 aggagttgactggctctggccggtggcggcggccacacggctgtgggggcctccaggctc 484512
Query: 1032 cacgtgacggcaggtgtgccgggagcgccggccagtggggtcggggctgctcttcgctgc 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484513 cacgtgacggcaggtgtgccgggagcgccggccagtggggtcggggctgctcttcgctgc 484572
Query: 1092 cctgcacccaggaggccccgctgcagctggaccttgctcttgccagcgggacgggcccat 1151
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 484573 cctgcacccaggaggccccgctgcagctggaccttgctcctgccagtgggacgggcccat 484632
Query: 1152 gtgggctccgcagtacagatgccctgggggtcacgctgaggttctggtgggcttggccct 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484633 gtgggctccgcagtacagatgccctgggggtcacgctgaggttctggtgggcttggccct 484692
Query: 1212 gcagggtgttctctcggaagccagagtctgcaccacggcccctcccagccaaggagcagg 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 484693 gcagggtgttctctcggaagccagagtctgcaccacggcccctcccagccaaggagcggg 484752
Query: 1272 cggcccctgggtgccagaggctgctcatcccccgtctcctccctgtaaatacgcttgtgc 1331
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 484753 cggcccctgggtgccagaggctgctcgtcccccgtctcctccctgtaaatacgcttgtgc 484812
Query: 1332 cccgcctgccttctgccgcctcctgggctctcgccatgacccgaaagcgc-agggctggt 1390
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 484813 cccgcctgcctcctgccgcctcctgggctctcgccatgacccg-aagcgcaagggctggt 484871
Query: 1391 gggagagccacctcgtggggctggcggggcggcctgaggagcttcggacaggctgcagtt 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484872 gggagagccacctcgtggggctggcggggcggcctgaggagcttcggacaggctgcagtt 484931
Query: 1451 ttctgttttctcccattcctgatgtttacttggttttccccgagcttccaggg 1503
||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 484932 ttctgttttctccaattcctgatgtttacttggttttcccgaagcttccaggg 484984
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 485 ggtgatggaggactccatgagctcggccaccacgctgaccacgccgcaggagcaggtgga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483762 ggtgatggaggactccatgagctcggccaccacgctgaccacgccgcaggagcaggtgga 483821
Query: 545 cagcctcatcatgcagatcgctgaggagaacggcctggaggtcctggaccagctcagcca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483822 cagcctcatcatgcagatcgctgaggagaacggcctggaggtcctggaccagctcagcca 483881
Query: 605 gctgcccgagggcgcctccgccgtgggcgagagctccgtgcgcagccaggaggaccagct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483882 gctgcccgagggcgcctccgccgtgggcgagagctccgtgcgcagccaggaggaccagct 483941
Query: 665 gtctcggaggt 675
|||||||||||
Sbjct: 483942 gtctcggaggt 483952
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 208 aggcccttcagcagaagaacgtggagtgtgcgcgggtgtacgccgagaacgccattcgca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482960 aggcccttcagcagaagaacgtggagtgtgcgcgggtgtacgccgagaacgccattcgca 483019
Query: 268 agaagaatgagggtgtgaactggctgcgcatggcgtcccgcgtggatgcggtggcctcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483020 agaagaatgagggtgtgaactggctgcgcatggcgtcccgcgtggatgcggtggcctcca 483079
Query: 328 aggtgcagacggccgtgaccatgaagggggtga 360
|||||||||||||||||||||||||||||||||
Sbjct: 483080 aggtgcagacggccgtgaccatgaagggggtga 483112
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 356 ggtgacgaagaacatggcacaggtgaccaaagccctggaccgcgcgctcagcaccatgga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483373 ggtgacgaagaacatggcacaggtgaccaaagccctggaccgcgcgctcagcaccatgga 483432
Query: 416 cctgcagaaggtctctgcggtgatggataagtttgagcagcaggtgcagaacctggatgt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483433 cctgcagaaggtctctgcggtgatggataagtttgagcagcaggtgcagaacctggatgt 483492
Query: 476 gcacacggcggt 487
||||||||||||
Sbjct: 483493 gcacacggcggt 483504
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 gaagtgcccgcccggccgccagcctgcgccggttggctccttcgacgccgctgggagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478537 gaagtgcccgcccggccgccagcctgcgccggttggctccttcgacgccgctgggagatt 478596
Query: 61 cccgtcccgccgctcccgccaggcctgccgctgccggacccgccatggacg 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478597 cccgtcccgccgctcccgccaggcctgccgctgccggacccgccatggacg 478647
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 130 agttcacagcgaagcagctggagaagctggccaagaaggcggagaaggactccaaggcgg 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482503 agttcacagcgaagcagctggagaagctggccaagaaggcggagaaggactccaaggcgg 482562
Query: 190 agcaggccaaggtgaagaagg 210
|||||||||||||||||||||
Sbjct: 482563 agcaggccaaggtgaagaagg 482583
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,644,641
Number of extensions: 289
Number of successful extensions: 289
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 6
Length of query: 1529
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1508
Effective length of database: 2,808,413,156
Effective search space: 4235087039248
Effective search space used: 4235087039248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)