Animal-Genome cDNA 20110601C-013635


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013635
         (1473 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001098450.1| tether containing UBX domain for GLUT4 [Bos ...   630   0.0  
Alignment   gi|XP_002696182.1| PREDICTED: alveolar soft part sarcoma chromo...   276   3e-74
Alignment   gi|XP_002696183.1| PREDICTED: alveolar soft part sarcoma chromo...   219   6e-57
Alignment   gi|NP_001039451.1| UBX domain-containing protein 6 [Bos taurus].      70   5e-12

>ref|NP_001098450.1| tether containing UBX domain for GLUT4 [Bos taurus].
          Length = 552

 Score =  630 bits (1625), Expect = 0.0
 Identities = 337/472 (71%), Positives = 351/472 (74%), Gaps = 3/472 (0%)
 Frame = +3

Query: 66   NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQRNVLDLSLQWRFANLPNNAKLE 245
            NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQRNVLDLS+QWRFANLPNNAKLE
Sbjct: 18   NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQRNVLDLSVQWRFANLPNNAKLE 77

Query: 246  MVPISRSREGPETMVRVALQLDDGSRLQDAFCSGRTLWELLCHFAQIRERLERPCQASPV 425
            MVPISRSREGPE MVR+ALQLDDGSRLQD FCSG++LWELLCHFAQIRE LERPC+ASPV
Sbjct: 78   MVPISRSREGPENMVRIALQLDDGSRLQDTFCSGQSLWELLCHFAQIRECLERPCEASPV 137

Query: 426  CVYMRDEVTGRAXXXXXXXXXXXXXXXXXXIRFAMKPWDAASTQEPGAAQSRSPGSPRLT 605
            CVYMRDEVTGRA                  IRF+MK  D AS QEPGA+ S+SPGSP  T
Sbjct: 138  CVYMRDEVTGRAALQSTTLQSLGLTGGSAIIRFSMKRCDPASKQEPGASWSKSPGSP--T 195

Query: 606  P---AGQAAGSPLLPLNPAGLSHGDVSRQDAAASXXXXXXXXXXXXXXXXXXXXXXXXXX 776
            P   A QAA SPLLPLN AGLS GDVSR+D A S                          
Sbjct: 196  PSMSADQAASSPLLPLNSAGLSQGDVSRKDEAVSPGASRVDGLGPKPADAQAKQISKEPP 255

Query: 777  XXXXXXXSGGGQRLGGPCGAARPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 956
                   SGGGQRLGG  G+ARPL+                                   
Sbjct: 256  PAPFVPFSGGGQRLGGSSGSARPLM----SSSAKLPKSFSSPAGPSKPKKSRPGQEPQPE 311

Query: 957  XXXXVDRAPVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT 1136
                VDR PVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT
Sbjct: 312  PEPPVDRDPVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT 371

Query: 1137 KALREAQMKEKLQRYPKVVLRVLFPDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHL 1316
            KA REAQMKEKLQRYPKVVLRVLFPDR+ILQGFFRPSETVGDLRDFVRSHLGNP LPF+L
Sbjct: 372  KAFREAQMKEKLQRYPKVVLRVLFPDRYILQGFFRPSETVGDLRDFVRSHLGNPELPFYL 431

Query: 1317 FIAPPKTILDDHTLTPF*GSLFPAALVHFGPEEATSIYLEPRLLEHTVSPSA 1472
            FIAPPKTILDDHTLT F  +LFP ALVHFGPEE T  YLEPRLLEHTVSPSA
Sbjct: 432  FIAPPKTILDDHTLTLFQANLFPTALVHFGPEEPTGSYLEPRLLEHTVSPSA 483


>ref|XP_002696182.1| PREDICTED: alveolar soft part sarcoma chromosome region, candidate
            1-like [Bos taurus].
          Length = 301

 Score =  276 bits (706), Expect = 3e-74
 Identities = 137/152 (90%), Positives = 141/152 (92%)
 Frame = +3

Query: 1017 QAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKALREAQMKEKLQRYPKVVL 1196
            QAWPAELPDEF+EVT  DVRRRLAQLKSERKRLEEAPLVTKA REAQMKEKLQRYPKVVL
Sbjct: 103  QAWPAELPDEFYEVTAGDVRRRLAQLKSERKRLEEAPLVTKAFREAQMKEKLQRYPKVVL 162

Query: 1197 RVLFPDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFIAPPKTILDDHTLTPF*GS 1376
            RVLFPDR+ILQGFFRPSETVGDLRDFVRSHLGNP LPF+LFIAPPKTILDDHTLT F  +
Sbjct: 163  RVLFPDRYILQGFFRPSETVGDLRDFVRSHLGNPELPFYLFIAPPKTILDDHTLTLFQAN 222

Query: 1377 LFPAALVHFGPEEATSIYLEPRLLEHTVSPSA 1472
            LFP ALVHFGPEE T  YLEPRLLEHTVSPSA
Sbjct: 223  LFPTALVHFGPEEPTGSYLEPRLLEHTVSPSA 254


>ref|XP_002696183.1| PREDICTED: alveolar soft part sarcoma chromosome region, candidate
           1-like [Bos taurus].
          Length = 408

 Score =  219 bits (557), Expect = 6e-57
 Identities = 107/129 (82%), Positives = 111/129 (86%)
 Frame = +3

Query: 3   RERKMXXXXXXXXXXXXXXXXNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQR 182
           RERKM                NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQR
Sbjct: 280 RERKMAAPAGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQR 339

Query: 183 NVLDLSLQWRFANLPNNAKLEMVPISRSREGPETMVRVALQLDDGSRLQDAFCSGRTLWE 362
           NVLDLS+QWRFANLPNNAKLEMVPISRSREGPE MVR+ALQLDDGSRLQD FCSG++LWE
Sbjct: 340 NVLDLSVQWRFANLPNNAKLEMVPISRSREGPENMVRIALQLDDGSRLQDTFCSGQSLWE 399

Query: 363 LLCHFAQIR 389
           LLCHFAQIR
Sbjct: 400 LLCHFAQIR 408


>ref|NP_001039451.1| UBX domain-containing protein 6 [Bos taurus].
          Length = 441

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
 Frame = +3

Query: 1032 ELPDEFFEVTVDDVRRRLAQLKSER-KRLEEAPLVTKALREAQMKEKLQRYPKVVLRVLF 1208
            +LP +FF +T ++++R   +L+SE  +RL  + L TKA+RE + + ++++Y   +LRV  
Sbjct: 287  DLPADFFNLTAEEIKRE-QRLRSEAVERL--SVLRTKAMREREEQREMRKYTYTLLRVRL 343

Query: 1209 PDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFIAPPKTILDDHTLTPF*GSLFPA 1388
            PD  +LQG F   E V  L  FVR  L N  LPF L  +  + + +D  L      L P+
Sbjct: 344  PDGCLLQGTFYARERVAALYGFVREALQNDWLPFELLASGGQKLSEDENLAFNECGLVPS 403

Query: 1389 ALVHFGPEEA 1418
            AL+ F  + A
Sbjct: 404  ALLTFSLDAA 413


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,863,559
Number of extensions: 1486281
Number of successful extensions: 11894
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11670
Number of HSP's successfully gapped: 5
Length of query: 491
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 385
Effective length of database: 14,174,046
Effective search space: 5457007710
Effective search space used: 5457007710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013635

Animal-Genome cDNA 20110601C-013635


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013635
         (1473 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533134.2| PREDICTED: similar to alveolar soft part sarcom...   597   e-171
Alignment   gi|XP_855713.1| PREDICTED: similar to alveolar soft part sarcom...   476   e-134
Alignment   gi|XP_542155.2| PREDICTED: similar to UBX domain containing 1 [...    69   1e-11

>ref|XP_533134.2| PREDICTED: similar to alveolar soft part sarcoma chromosome region,
            candidate 1 long isoform isoform 1 [Canis familiaris].
          Length = 544

 Score =  597 bits (1539), Expect = e-171
 Identities = 318/472 (67%), Positives = 345/472 (73%), Gaps = 3/472 (0%)
 Frame = +3

Query: 66   NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQRNVLDLSLQWRFANLPNNAKLE 245
            NGRRHTVKVTPSTVLLQVLEDTCRRQDFNP+EYDLKFQRNVLDLSLQWRFANLPNNAKLE
Sbjct: 18   NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRNVLDLSLQWRFANLPNNAKLE 77

Query: 246  MVPISRSREGPETMVRVALQLDDGSRLQDAFCSGRTLWELLCHFAQIRERLERPCQASPV 425
            MVP+SRSREGPE MVR+ALQLDDGSRLQD FCSG+TLWELL HFAQ RERLE+P +ASPV
Sbjct: 78   MVPVSRSREGPENMVRIALQLDDGSRLQDTFCSGQTLWELLSHFAQTRERLEQPSEASPV 137

Query: 426  CVYMRDEVTGRAXXXXXXXXXXXXXXXXXXIRFAMKPWDAASTQEPGAAQSRSPGSPRLT 605
            CVYMRDEVTGRA                  IRF+MK   +A  Q+PG ++S++PGSP  T
Sbjct: 138  CVYMRDEVTGRAALQATTLQSLGLTGGSAIIRFSMKRCSSAGGQDPGVSRSKTPGSP--T 195

Query: 606  P---AGQAAGSPLLPLNPAGLSHGDVSRQDAAASXXXXXXXXXXXXXXXXXXXXXXXXXX 776
            P   A QAAGSPLLPL+PAGLS GDVS  D AA+                          
Sbjct: 196  PSLSADQAAGSPLLPLDPAGLSQGDVSHHDEAAT--------SGTGHVDAQAKPTSKEPT 247

Query: 777  XXXXXXXSGGGQRLGGPCGAARPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 956
                   SGGGQRLGGP G+ + +V                                   
Sbjct: 248  PAPFVPFSGGGQRLGGPSGSTKSVV----SPSAKLPKSFSSPGGPSKPKKSRPGQEPPPE 303

Query: 957  XXXXVDRAPVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT 1136
                VDR PVVCHPDLE LLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT
Sbjct: 304  PEPPVDRDPVVCHPDLEELLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT 363

Query: 1137 KALREAQMKEKLQRYPKVVLRVLFPDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHL 1316
            KA REAQM+EKL+RYPKVVLRVLFPDR+ILQGFFRP+ETVGDLRDFVRSHLGNP LPF+L
Sbjct: 364  KAFREAQMREKLERYPKVVLRVLFPDRYILQGFFRPNETVGDLRDFVRSHLGNPELPFYL 423

Query: 1317 FIAPPKTILDDHTLTPF*GSLFPAALVHFGPEEATSIYLEPRLLEHTVSPSA 1472
            FI PPKT+LDDHTLT F  +LFPAALVH G EE T ++L PRLLEHTVSPSA
Sbjct: 424  FITPPKTVLDDHTLTLFQANLFPAALVHLGAEEPTGLFLAPRLLEHTVSPSA 475


>ref|XP_855713.1| PREDICTED: similar to alveolar soft part sarcoma chromosome region,
            candidate 1 long isoform isoform 2 [Canis familiaris].
          Length = 467

 Score =  476 bits (1226), Expect = e-134
 Identities = 259/412 (62%), Positives = 285/412 (69%), Gaps = 3/412 (0%)
 Frame = +3

Query: 246  MVPISRSREGPETMVRVALQLDDGSRLQDAFCSGRTLWELLCHFAQIRERLERPCQASPV 425
            MVP+SRSREGPE MVR+ALQLDDGSRLQD FCSG+TLWELL HFAQ RERLE+P +ASPV
Sbjct: 1    MVPVSRSREGPENMVRIALQLDDGSRLQDTFCSGQTLWELLSHFAQTRERLEQPSEASPV 60

Query: 426  CVYMRDEVTGRAXXXXXXXXXXXXXXXXXXIRFAMKPWDAASTQEPGAAQSRSPGSPRLT 605
            CVYMRDEVTGRA                  IRF+MK   +A  Q+PG ++S++PGSP  T
Sbjct: 61   CVYMRDEVTGRAALQATTLQSLGLTGGSAIIRFSMKRCSSAGGQDPGVSRSKTPGSP--T 118

Query: 606  P---AGQAAGSPLLPLNPAGLSHGDVSRQDAAASXXXXXXXXXXXXXXXXXXXXXXXXXX 776
            P   A QAAGSPLLPL+PAGLS GDVS  D AA+                          
Sbjct: 119  PSLSADQAAGSPLLPLDPAGLSQGDVSHHDEAATSGTGHVDAQAKPTSKEPTPAPFVPF- 177

Query: 777  XXXXXXXSGGGQRLGGPCGAARPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 956
                   SGGGQRLGGP G+ + +V                                   
Sbjct: 178  -------SGGGQRLGGPSGSTKSVVSPSAKLPKSFSSPGGPSKPKKSRPGQEPPPEPEPP 230

Query: 957  XXXXVDRAPVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT 1136
                VDR PVVCHPDLE LLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT
Sbjct: 231  ----VDRDPVVCHPDLEELLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVT 286

Query: 1137 KALREAQMKEKLQRYPKVVLRVLFPDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHL 1316
            KA REAQM+EKL+RYPKVVLRVLFPDR+ILQGFFRP+ETVGDLRDFVRSHLGNP LPF+L
Sbjct: 287  KAFREAQMREKLERYPKVVLRVLFPDRYILQGFFRPNETVGDLRDFVRSHLGNPELPFYL 346

Query: 1317 FIAPPKTILDDHTLTPF*GSLFPAALVHFGPEEATSIYLEPRLLEHTVSPSA 1472
            FI PPKT+LDDHTLT F  +LFPAALVH G EE T ++L PRLLEHTVSPSA
Sbjct: 347  FITPPKTVLDDHTLTLFQANLFPAALVHLGAEEPTGLFLAPRLLEHTVSPSA 398


>ref|XP_542155.2| PREDICTED: similar to UBX domain containing 1 [Canis familiaris].
          Length = 417

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
 Frame = +3

Query: 1032 ELPDEFFEVTVDDVRRRLAQLKSER-KRLEEAPLVTKALREAQMKEKLQRYPKVVLRVLF 1208
            +LP +FF +T ++++R   +L+SE  +RL  + L TKA+RE + + +L++Y   +LRV  
Sbjct: 262  DLPGDFFNLTAEEIKRE-QRLRSEAVERL--SVLRTKAMREREEQRELRKYTYTLLRVRL 318

Query: 1209 PDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFIAPPKTILDDHTLTPF*GSLFPA 1388
            PD  +LQG F   E VG L  FVR  L +  LPF L  +  + + ++ +L      L P+
Sbjct: 319  PDGCLLQGTFYARERVGALYAFVREALQSDWLPFDLLASGGQKLSEEDSLAFNECGLVPS 378

Query: 1389 ALVHFGPEEA 1418
            AL+ F  + A
Sbjct: 379  ALLTFSWDAA 388


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,052,795
Number of extensions: 1532502
Number of successful extensions: 12316
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12126
Number of HSP's successfully gapped: 7
Length of query: 491
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 384
Effective length of database: 15,307,552
Effective search space: 5878099968
Effective search space used: 5878099968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013635
         (1473 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003123117.1| PREDICTED: UBX domain-containing protein 6-l...    72   1e-12

>ref|XP_003123117.1| PREDICTED: UBX domain-containing protein 6-like [Sus scrofa].
          Length = 441

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
 Frame = +3

Query: 1032 ELPDEFFEVTVDDVRRRLAQLKSER-KRLEEAPLVTKALREAQMKEKLQRYPKVVLRVLF 1208
            +LP +FF +T ++++R   +L+SE  +RL  + L TKA+RE + + ++++Y   +LRV F
Sbjct: 287  DLPMDFFNLTAEEIKRE-QRLRSEAVERL--SVLRTKAMREREEQREMRKYTYTLLRVRF 343

Query: 1209 PDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFIAPPKTILDDHTLTPF*GSLFPA 1388
            PD  +LQG F   E V  L  FVR  L N  LPF L  +  + + +D  L      L P+
Sbjct: 344  PDGCLLQGTFYARERVAALYGFVREALQNDWLPFELLASGGQKLSEDENLAFNECGLVPS 403

Query: 1389 ALVHFGPEEA 1418
            AL+ F  + A
Sbjct: 404  ALLTFSWDAA 413


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,582,674
Number of extensions: 964891
Number of successful extensions: 7850
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7704
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 388
Effective length of database: 8,779,541
Effective search space: 3406461908
Effective search space used: 3406461908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013635
         (1473 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081153.1| tether containing UBX domain for GLUT4 isoform ...   546   e-155
Alignment   gi|NP_937866.1| tether containing UBX domain for GLUT4 isoform ...   428   e-120
Alignment   gi|NP_001157696.1| tether containing UBX domain for GLUT4 isofo...   378   e-105
Alignment   gi|NP_077752.1| UBX domain-containing protein 6 [Mus musculus].       67   5e-11

>ref|NP_081153.1| tether containing UBX domain for GLUT4 isoform 1 [Mus musculus].
          Length = 550

 Score =  546 bits (1407), Expect = e-155
 Identities = 297/469 (63%), Positives = 325/469 (69%), Gaps = 1/469 (0%)
 Frame = +3

Query: 66   NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQRNVLDLSLQWRFANLPNNAKLE 245
            NGRRHTVKVTPSTVLLQVLEDTCRRQDFNP+EYDLKFQR VLDLSLQWRFANLPNNAKLE
Sbjct: 18   NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLE 77

Query: 246  MVPISRSREGPETMVRVALQLDDGSRLQDAFCSGRTLWELLCHFAQIRERLERPCQASPV 425
            MVP+SRSREGPE +VR+A QLDDGSRLQDAFCS +TLWELL HFAQ RERL++  + +PV
Sbjct: 78   MVPVSRSREGPENIVRIAFQLDDGSRLQDAFCSRQTLWELLSHFAQTRERLQQLGEKTPV 137

Query: 426  CVYMRDEVTGRAXXXXXXXXXXXXXXXXXXIRFAMKPWDAASTQEPGAAQSRSPGSPRLT 605
            CVYMR+EVTGRA                  IRF +K  D A  QE  A +S++PGSP  +
Sbjct: 138  CVYMRNEVTGRAALQNTTLQSLGLTGGSATIRFVIKQCDTAGKQESIAVRSKAPGSPVSS 197

Query: 606  -PAGQAAGSPLLPLNPAGLSHGDVSRQDAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXX 782
              A QA+ S LLPLN    S GD++ +  A +                            
Sbjct: 198  LSADQASSSTLLPLNSGEFSRGDLNHEGDANTSGTGLEGGPKPTDAQTKQSTSEPASAPF 257

Query: 783  XXXXXSGGGQRLGGPCGAARPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 962
                 SGGGQRLGGP  + RPL                                      
Sbjct: 258  VPF--SGGGQRLGGPSASLRPLTSPSANSSKSFSGPGGPSKPKKPKPGEEPQQEPEPP-- 313

Query: 963  XXVDRAPVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA 1142
              VDR PVV HPDLE LLQ WPAE+PDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA
Sbjct: 314  --VDRDPVVYHPDLEDLLQPWPAEVPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA 371

Query: 1143 LREAQMKEKLQRYPKVVLRVLFPDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFI 1322
             REAQMKEKL+RYPKV LRVLFPDR+ILQGFFRPSETVGDLRDFVRSHLGNP L F+LFI
Sbjct: 372  FREAQMKEKLERYPKVALRVLFPDRYILQGFFRPSETVGDLRDFVRSHLGNPELSFYLFI 431

Query: 1323 APPKTILDDHTLTPF*GSLFPAALVHFGPEEATSIYLEPRLLEHTVSPS 1469
            APPK +LDDHTLT F  +LFPAALVHFG EE T +YLEP LLEHTVSPS
Sbjct: 432  APPKMVLDDHTLTLFQANLFPAALVHFGAEEPTGLYLEPGLLEHTVSPS 480


>ref|NP_937866.1| tether containing UBX domain for GLUT4 isoform 2 [Mus musculus].
          Length = 473

 Score =  428 bits (1100), Expect = e-120
 Identities = 239/409 (58%), Positives = 266/409 (65%), Gaps = 1/409 (0%)
 Frame = +3

Query: 246  MVPISRSREGPETMVRVALQLDDGSRLQDAFCSGRTLWELLCHFAQIRERLERPCQASPV 425
            MVP+SRSREGPE +VR+A QLDDGSRLQDAFCS +TLWELL HFAQ RERL++  + +PV
Sbjct: 1    MVPVSRSREGPENIVRIAFQLDDGSRLQDAFCSRQTLWELLSHFAQTRERLQQLGEKTPV 60

Query: 426  CVYMRDEVTGRAXXXXXXXXXXXXXXXXXXIRFAMKPWDAASTQEPGAAQSRSPGSPRLT 605
            CVYMR+EVTGRA                  IRF +K  D A  QE  A +S++PGSP  +
Sbjct: 61   CVYMRNEVTGRAALQNTTLQSLGLTGGSATIRFVIKQCDTAGKQESIAVRSKAPGSPVSS 120

Query: 606  -PAGQAAGSPLLPLNPAGLSHGDVSRQDAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXX 782
              A QA+ S LLPLN    S GD++ +  A +                            
Sbjct: 121  LSADQASSSTLLPLNSGEFSRGDLNHEGDANTSGTGLEGGPKPTDAQTKQSTSEPASAPF 180

Query: 783  XXXXXSGGGQRLGGPCGAARPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 962
                 SGGGQRLGGP  + RPL                                      
Sbjct: 181  VPF--SGGGQRLGGPSASLRPLTSPSANSSKSFSGPGGPSKPKKPKPGEEPQQEPEPP-- 236

Query: 963  XXVDRAPVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA 1142
              VDR PVV HPDLE LLQ WPAE+PDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA
Sbjct: 237  --VDRDPVVYHPDLEDLLQPWPAEVPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA 294

Query: 1143 LREAQMKEKLQRYPKVVLRVLFPDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFI 1322
             REAQMKEKL+RYPKV LRVLFPDR+ILQGFFRPSETVGDLRDFVRSHLGNP L F+LFI
Sbjct: 295  FREAQMKEKLERYPKVALRVLFPDRYILQGFFRPSETVGDLRDFVRSHLGNPELSFYLFI 354

Query: 1323 APPKTILDDHTLTPF*GSLFPAALVHFGPEEATSIYLEPRLLEHTVSPS 1469
            APPK +LDDHTLT F  +LFPAALVHFG EE T +YLEP LLEHTVSPS
Sbjct: 355  APPKMVLDDHTLTLFQANLFPAALVHFGAEEPTGLYLEPGLLEHTVSPS 403


>ref|NP_001157696.1| tether containing UBX domain for GLUT4 isoform 3 [Mus musculus].
          Length = 452

 Score =  378 bits (971), Expect = e-105
 Identities = 221/409 (54%), Positives = 247/409 (60%), Gaps = 1/409 (0%)
 Frame = +3

Query: 246  MVPISRSREGPETMVRVALQLDDGSRLQDAFCSGRTLWELLCHFAQIRERLERPCQASPV 425
            MVP+SRSREGPE +VR+A QLDDGSRLQDAFCS +TLWELL HFAQ RERL++  + +PV
Sbjct: 1    MVPVSRSREGPENIVRIAFQLDDGSRLQDAFCSRQTLWELLSHFAQTRERLQQLGEKTPV 60

Query: 426  CVYMRDEVTGRAXXXXXXXXXXXXXXXXXXIRFAMKPWDAASTQEPGAAQSRSPGSPRLT 605
            CVYMR+EVTGRA                  IRF +K  D A  QE  A +S++PGSP  +
Sbjct: 61   CVYMRNEVTGRAALQNTTLQSLGLTGGSATIRFVIKQCDTAGKQESIAVRSKAPGSPVSS 120

Query: 606  -PAGQAAGSPLLPLNPAGLSHGDVSRQDAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXX 782
              A QA+ S LLPLN    S GD++ +  A +                            
Sbjct: 121  LSADQASSSTLLPLNSGEFSRGDLNHEGDANTSGTGLEGGPKPTDAQTKQSTSEPASAPF 180

Query: 783  XXXXXSGGGQRLGGPCGAARPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 962
                 SGGGQRLGGP  + RPL                                      
Sbjct: 181  VPF--SGGGQRLGGPSASLRPLTSPSANSSKSFSGPGGPSKPKKPKPGEEPQQEPEPP-- 236

Query: 963  XXVDRAPVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA 1142
              VDR PVV HPDLE LLQ WPAE+PDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA
Sbjct: 237  --VDRDPVVYHPDLEDLLQPWPAEVPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKA 294

Query: 1143 LREAQMKEKLQRYPKVVLRVLFPDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFI 1322
             REAQMKEKL+RYPKV LRVLFPDR+ILQGFFRPSETV                     I
Sbjct: 295  FREAQMKEKLERYPKVALRVLFPDRYILQGFFRPSETV---------------------I 333

Query: 1323 APPKTILDDHTLTPF*GSLFPAALVHFGPEEATSIYLEPRLLEHTVSPS 1469
            APPK +LDDHTLT F  +LFPAALVHFG EE T +YLEP LLEHTVSPS
Sbjct: 334  APPKMVLDDHTLTLFQANLFPAALVHFGAEEPTGLYLEPGLLEHTVSPS 382


>ref|NP_077752.1| UBX domain-containing protein 6 [Mus musculus].
          Length = 442

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 13/152 (8%)
 Frame = +3

Query: 1032 ELPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKALREAQMKEKLQRYPKVVLRVLFP 1211
            ELP +FF +T ++V+R         +RL    L TKA+RE + + +L++Y   ++RV  P
Sbjct: 287  ELPSDFFSLTAEEVKREQRLRTEAVERLSS--LRTKAMREKEEQRELRKYTYALVRVRLP 344

Query: 1212 DRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFIAPPKTILDDHTLTPF*GSLFPAA 1391
            D  +LQG F   E +  L  FVR  L N  LPF L  +  + + ++  L      L P+A
Sbjct: 345  DGCLLQGTFYAREKLSALFRFVREALQNDWLPFELRASGGQKLEENEALALNECGLVPSA 404

Query: 1392 LVHF-------------GPEEATSIYLEPRLL 1448
            L+ F             G E A S+ L P LL
Sbjct: 405  LLTFSWDASVLEDIRAAGAEPAKSV-LRPELL 435


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,108,042
Number of extensions: 1209415
Number of successful extensions: 8293
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8141
Number of HSP's successfully gapped: 10
Length of query: 491
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 386
Effective length of database: 12,463,779
Effective search space: 4811018694
Effective search space used: 4811018694
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013635
         (1473 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_076988.1| tether containing UBX domain for GLUT4 [Homo sa...   519   e-147
Alignment   gi|NP_001164562.1| UBX domain-containing protein 6 isoform 2 [H...    69   1e-11
Alignment   gi|NP_079517.1| UBX domain-containing protein 6 isoform 1 [Homo...    69   1e-11

>ref|NP_076988.1| tether containing UBX domain for GLUT4 [Homo sapiens].
          Length = 553

 Score =  519 bits (1337), Expect = e-147
 Identities = 290/484 (59%), Positives = 314/484 (64%), Gaps = 15/484 (3%)
 Frame = +3

Query: 66   NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPNEYDLKFQRNVLDLSLQWRFANLPNNAKLE 245
            NGRRHTVKVTPSTVLLQVLEDTCRRQDFNP EYDLKFQR+VLDLSLQWRFANLPNNAKLE
Sbjct: 18   NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPCEYDLKFQRSVLDLSLQWRFANLPNNAKLE 77

Query: 246  MVPISRSREGPETMVRVALQLDDGSRLQDAFCSGRTLWELLCHFAQIRERLERPCQASPV 425
            MVP SRSREGPE MVR+ALQLDDGSRLQD+FCSG+TLWELL HF QIRE L+ P  A+PV
Sbjct: 78   MVPASRSREGPENMVRIALQLDDGSRLQDSFCSGQTLWELLSHFPQIRECLQHPGGATPV 137

Query: 426  CVYMRDEVTGRAXXXXXXXXXXXXXXXXXXIRFAMKPWDAASTQEPGAAQSRSPGSPRLT 605
            CVY RDEVTG A                  IRF MK +D    + PG+  S +       
Sbjct: 138  CVYTRDEVTGEAALRGTTLQSLGLTGGSATIRFVMKCYDPVG-KTPGSLGSSAS------ 190

Query: 606  PAGQAAGSPLLPLNPAGLSHGDVSRQDAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 785
             AGQAA S  LPL    LS GD+SR + A +                             
Sbjct: 191  -AGQAAASAPLPLESGELSRGDLSRPEDADTSGPCCEHTQEKQSTRAPAAAPFVPF---- 245

Query: 786  XXXXSGGGQRLGG---------------PCGAARPLVXXXXXXXXXXXXXXXXXXXXXXX 920
                SGGGQRLGG               P   + P                         
Sbjct: 246  ----SGGGQRLGGPPGPTRPLTSSSAKLPKSLSSPGGPSKPKKSKSGQDPQQEQEQERER 301

Query: 921  XXXXXXXXXXXXXXXXVDRAPVVCHPDLEVLLQAWPAELPDEFFEVTVDDVRRRLAQLKS 1100
                            VDR PVVCHPDLE  LQAWPAELPDEFFE+TVDDVRRRLAQLKS
Sbjct: 302  DPQQEQERERPVDREPVDREPVVCHPDLEERLQAWPAELPDEFFELTVDDVRRRLAQLKS 361

Query: 1101 ERKRLEEAPLVTKALREAQMKEKLQRYPKVVLRVLFPDRHILQGFFRPSETVGDLRDFVR 1280
            ERKRLEEAPLVTKA REAQ+KEKL+RYPKV LRVLFPDR++LQGFFRPSETVGDLRDFVR
Sbjct: 362  ERKRLEEAPLVTKAFREAQIKEKLERYPKVALRVLFPDRYVLQGFFRPSETVGDLRDFVR 421

Query: 1281 SHLGNPALPFHLFIAPPKTILDDHTLTPF*GSLFPAALVHFGPEEATSIYLEPRLLEHTV 1460
            SHLGNP L F+LFI PPKT+LDDHT T F  +LFPAALVH G EE   +YLEP LLEH +
Sbjct: 422  SHLGNPELSFYLFITPPKTVLDDHTQTLFQANLFPAALVHLGAEEPAGVYLEPGLLEHAI 481

Query: 1461 SPSA 1472
            SPSA
Sbjct: 482  SPSA 485


>ref|NP_001164562.1| UBX domain-containing protein 6 isoform 2 [Homo sapiens].
          Length = 388

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
 Frame = +3

Query: 1032 ELPDEFFEVTVDDVRRRLAQLKSER-KRLEEAPLVTKALREAQMKEKLQRYPKVVLRVLF 1208
            ELP +FF +T ++++R   +L+SE  +RL  + L TKA+RE + +  L++Y   +LRV  
Sbjct: 234  ELPGDFFNLTAEEIKRE-QRLRSEAVERL--SVLRTKAMREKEEQRGLRKYNYTLLRVRL 290

Query: 1209 PDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFIAPPKTILDDHTLTPF*GSLFPA 1388
            PD  +LQG F   E +G +  FVR  L +  LPF L  +  + + +D  L      L P+
Sbjct: 291  PDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPS 350

Query: 1389 ALVHF 1403
            AL+ F
Sbjct: 351  ALLTF 355


>ref|NP_079517.1| UBX domain-containing protein 6 isoform 1 [Homo sapiens].
          Length = 441

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
 Frame = +3

Query: 1032 ELPDEFFEVTVDDVRRRLAQLKSER-KRLEEAPLVTKALREAQMKEKLQRYPKVVLRVLF 1208
            ELP +FF +T ++++R   +L+SE  +RL  + L TKA+RE + +  L++Y   +LRV  
Sbjct: 287  ELPGDFFNLTAEEIKRE-QRLRSEAVERL--SVLRTKAMREKEEQRGLRKYNYTLLRVRL 343

Query: 1209 PDRHILQGFFRPSETVGDLRDFVRSHLGNPALPFHLFIAPPKTILDDHTLTPF*GSLFPA 1388
            PD  +LQG F   E +G +  FVR  L +  LPF L  +  + + +D  L      L P+
Sbjct: 344  PDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPS 403

Query: 1389 ALVHF 1403
            AL+ F
Sbjct: 404  ALLTF 408


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,693,291
Number of extensions: 1475885
Number of successful extensions: 10890
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10719
Number of HSP's successfully gapped: 5
Length of query: 491
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 384
Effective length of database: 14,770,016
Effective search space: 5671686144
Effective search space used: 5671686144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013635
         (1473 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896186.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   127   2e-26
gb|GL896558.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   119   5e-24
gb|GL896336.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   103   3e-19
gb|GL896272.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   103   3e-19

>gb|GL896186.1| Sus scrofa unplaced genomic scaffold chrU_scaffold551
          Length = 5629

 Score =  127 bits (64), Expect = 2e-26
 Identities = 64/64 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1254 gtgggggacttacgggactttgtgaggagccacctgggcaaccccgcgctgcccttccac 1313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4602 gtgggggacttacgggactttgtgaggagccacctgggcaaccccgcgctgcccttccac 4543

                
Query: 1314 ctgt 1317
            ||||
Sbjct: 4542 ctgt 4539



 Score =  101 bits (51), Expect = 1e-18
 Identities = 51/51 (100%)
 Strand = Plus / Minus

                                                               
Query: 1423 gcatctacttggagcccaggctgctggaacacactgtgtccccatctgctg 1473
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603 gcatctacttggagcccaggctgctggaacacactgtgtccccatctgctg 3553



 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                       
Query: 1373 cagcctcttccccgctgcccttgtgcatttcggacccgaggag 1415
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3910 cagcctcttccccgctgcccttgtgcatttcggacccgaggag 3868



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                     
Query: 1214 ccgccacatcctgcagggcttcttccgccccagtgagaccg 1254
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 ccgccacatcctgcagggcttcttccgccccagtgagaccg 5241


>gb|GL896558.1| Sus scrofa unplaced genomic scaffold chrU_scaffold887
          Length = 655

 Score =  119 bits (60), Expect = 5e-24
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                       
Query: 115 aggtcctggaggacacgtgccggcggcaggacttcaaccccaacgagtacgacctgaagt 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aggtcctggaggacacgtgccggcggcaggacttcaaccccaacgagtacgacctgaagt 57


>gb|GL896336.1| Sus scrofa unplaced genomic scaffold chrU_scaffold687
          Length = 2922

 Score =  103 bits (52), Expect = 3e-19
 Identities = 52/52 (100%)
 Strand = Plus / Minus

                                                                
Query: 1055 ggtgaccgtggacgacgtccgaaggcgcctggcccagctcaagagcgagcgg 1106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99   ggtgaccgtggacgacgtccgaaggcgcctggcccagctcaagagcgagcgg 48


>gb|GL896272.1| Sus scrofa unplaced genomic scaffold chrU_scaffold629
          Length = 7383

 Score =  103 bits (52), Expect = 3e-19
 Identities = 52/52 (100%)
 Strand = Plus / Minus

                                                                
Query: 445  aggtgaccggcagagccgccttgcagagcacgaccctgcagtcgctgggcct 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 aggtgaccggcagagccgccttgcagagcacgaccctgcagtcgctgggcct 2612


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,919,720
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 7
Length of query: 1473
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1452
Effective length of database: 2,808,413,156
Effective search space: 4077815902512
Effective search space used: 4077815902512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)