Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013645
(1079 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777090.1| platelet-activating factor acetylhydrolase IB s... 431 e-121
Alignment gi|NP_777089.1| platelet-activating factor acetylhydrolase IB s... 297 1e-80
>ref|NP_777090.1| platelet-activating factor acetylhydrolase IB subunit gamma [Bos
taurus].
Length = 232
Score = 431 bits (1107), Expect = e-121
Identities = 206/223 (92%), Positives = 209/223 (93%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MS +ENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1 MSGDENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
LFSPLHALNFGIGGD+TQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61 LFSPLHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
V LVN+RQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 180
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQG 992
SDGTISHHDMYDYLHLSRLGYTPVC QDQGQG
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLTQDQGQG 223
>ref|NP_777089.1| platelet-activating factor acetylhydrolase IB subunit beta [Bos
taurus].
Length = 229
Score = 297 bits (761), Expect = 1e-80
Identities = 134/202 (66%), Positives = 167/202 (82%)
Frame = +3
Query: 333 EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 512
+ NPA+ P +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIWRELFS
Sbjct: 5 DSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFS 64
Query: 513 PLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVHL 692
PLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+AIV L
Sbjct: 65 PLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQL 124
Query: 693 VNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVHSDG 872
+N RQPQA+++VLGLLPRG+ PNPLR+KN +VN+L++ +L LD D GFVHSDG
Sbjct: 125 INTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDG 184
Query: 873 TISHHDMYDYLHLSRLGYTPVC 938
IS HDM+D+LHL+ GY +C
Sbjct: 185 AISCHDMFDFLHLTGGGYAKIC 206
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,104,524
Number of extensions: 1527988
Number of successful extensions: 7488
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7453
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013645
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013645
(1079 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533656.1| PREDICTED: similar to Platelet-activating facto... 431 e-121
Alignment gi|XP_852686.1| PREDICTED: similar to Platelet-activating facto... 431 e-121
Alignment gi|XP_855333.1| PREDICTED: similar to Platelet-activating facto... 311 7e-85
Alignment gi|XP_536562.2| PREDICTED: similar to platelet-activating facto... 299 3e-81
>ref|XP_533656.1| PREDICTED: similar to Platelet-activating factor acetylhydrolase IB
gamma subunit (PAF acetylhydrolase 29 kDa subunit)
(PAF-AH 29 kDa subunit) (PAF-AH gamma subunit) (PAFAH
gamma subunit) isoform 1 [Canis familiaris].
Length = 231
Score = 431 bits (1107), Expect = e-121
Identities = 207/223 (92%), Positives = 208/223 (93%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MS EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
LFSPLHALNFGIG D+TQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61 LFSPLHALNFGIGSDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
V LVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 180
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQG 992
SDGTISHHDMYDYLHLSRLGYTPVC QDQGQG
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQG 223
>ref|XP_852686.1| PREDICTED: similar to Platelet-activating factor acetylhydrolase IB
gamma subunit (PAF acetylhydrolase 29 kDa subunit)
(PAF-AH 29 kDa subunit) (PAF-AH gamma subunit) (PAFAH
gamma subunit) isoform 2 [Canis familiaris].
Length = 231
Score = 431 bits (1107), Expect = e-121
Identities = 207/223 (92%), Positives = 208/223 (93%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MS EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
LFSPLHALNFGIG D+TQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61 LFSPLHALNFGIGSDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
V LVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 180
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQG 992
SDGTISHHDMYDYLHLSRLGYTPVC QDQGQG
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQG 223
>ref|XP_855333.1| PREDICTED: similar to Platelet-activating factor acetylhydrolase IB
gamma subunit (PAF acetylhydrolase 29 kDa subunit)
(PAF-AH 29 kDa subunit) (PAF-AH gamma subunit) (PAFAH
gamma subunit) [Canis familiaris].
Length = 203
Score = 311 bits (797), Expect = 7e-85
Identities = 163/223 (73%), Positives = 168/223 (75%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MS EENPASKPTPVQD+QGDGRWMSLHHRFVADSKDKE +VVFI D LVQLMHQ
Sbjct: 1 MSREENPASKPTPVQDMQGDGRWMSLHHRFVADSKDKEAKVVFIRDCLVQLMHQ------ 54
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
L A N GG WR+ IVVVWVGTNNHGHTAEQVTGGIKA+
Sbjct: 55 ----LTARNICFGG-------WRM-----------IVVVWVGTNNHGHTAEQVTGGIKAV 92
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
V LVNQRQ QA+VVVLGLLPRGQHPNPLREKN RVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 93 VQLVNQRQSQAQVVVLGLLPRGQHPNPLREKNLRVNELVRAALAGHPRAHFLDADPGFVH 152
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQG 992
SDGTI HHDMYDYLHLS LGY PVC QDQGQG
Sbjct: 153 SDGTIRHHDMYDYLHLSCLGYPPVCRALHSLLLRLLAQDQGQG 195
>ref|XP_536562.2| PREDICTED: similar to platelet-activating factor acetylhydrolase,
isoform Ib, beta subunit 30kDa [Canis familiaris].
Length = 591
Score = 299 bits (766), Expect = 3e-81
Identities = 137/207 (66%), Positives = 172/207 (83%), Gaps = 1/207 (0%)
Frame = +3
Query: 321 KMSE-EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIW 497
+MS+ + NPA+ P +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIW
Sbjct: 362 RMSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIW 421
Query: 498 RELFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIK 677
RELFSPLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+
Sbjct: 422 RELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIE 481
Query: 678 AIVHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGF 857
AIV L+N RQPQA+++VLGLLPRG+ PNPLR+KN +VN+L++A+L LD D GF
Sbjct: 482 AIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKASLPKLANVQLLDTDGGF 541
Query: 858 VHSDGTISHHDMYDYLHLSRLGYTPVC 938
VHSDG IS HDM+D+LHL+ GY +C
Sbjct: 542 VHSDGAISCHDMFDFLHLTGGGYAKIC 568
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,101,997
Number of extensions: 1570704
Number of successful extensions: 7918
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7879
Number of HSP's successfully gapped: 4
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013645
(1079 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127220.1| PREDICTED: platelet-activating factor acetyl... 444 e-125
Alignment gi|XP_003127213.1| PREDICTED: platelet-activating factor acetyl... 444 e-125
Alignment gi|XP_003129931.1| PREDICTED: platelet-activating factor acetyl... 297 6e-81
>ref|XP_003127220.1| PREDICTED: platelet-activating factor acetylhydrolase IB subunit
gamma-like [Sus scrofa].
Length = 232
Score = 444 bits (1143), Expect = e-125
Identities = 213/225 (94%), Positives = 213/225 (94%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 180
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQGFV 998
SDGTISHHDMYDYLHLSRLGYTPVC QDQGQGFV
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGFV 225
>ref|XP_003127213.1| PREDICTED: platelet-activating factor acetylhydrolase IB subunit
gamma-like [Sus scrofa].
Length = 232
Score = 444 bits (1143), Expect = e-125
Identities = 213/225 (94%), Positives = 213/225 (94%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 180
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQGFV 998
SDGTISHHDMYDYLHLSRLGYTPVC QDQGQGFV
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGFV 225
>ref|XP_003129931.1| PREDICTED: platelet-activating factor acetylhydrolase IB subunit
beta-like [Sus scrofa].
Length = 229
Score = 297 bits (761), Expect = 6e-81
Identities = 134/202 (66%), Positives = 167/202 (82%)
Frame = +3
Query: 333 EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 512
+ NPA+ P +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIWRELFS
Sbjct: 5 DSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFS 64
Query: 513 PLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVHL 692
PLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+AIV L
Sbjct: 65 PLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQL 124
Query: 693 VNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVHSDG 872
+N RQPQA+++VLGLLPRG+ PNPLR+KN +VN+L++ +L LD D GFVHSDG
Sbjct: 125 INTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDG 184
Query: 873 TISHHDMYDYLHLSRLGYTPVC 938
IS HDM+D+LHL+ GY +C
Sbjct: 185 AISCHDMFDFLHLTGGGYAKIC 206
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,085,135
Number of extensions: 988999
Number of successful extensions: 4926
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4908
Number of HSP's successfully gapped: 3
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013645
(1079 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032802.1| platelet-activating factor acetylhydrolase IB s... 419 e-117
Alignment gi|NP_032801.2| platelet-activating factor acetylhydrolase IB s... 297 1e-80
>ref|NP_032802.1| platelet-activating factor acetylhydrolase IB subunit gamma [Mus
musculus].
Length = 232
Score = 419 bits (1077), Expect = e-117
Identities = 201/221 (90%), Positives = 205/221 (92%)
Frame = +3
Query: 330 EEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELF 509
E ENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELF
Sbjct: 4 EGENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELF 63
Query: 510 SPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVH 689
SPLHALNFGIGGD+TQHVLWRLENGELEHIRPKIVVVWVGTNNH HTAEQVTGGIKAIV
Sbjct: 64 SPLHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHSHTAEQVTGGIKAIVQ 123
Query: 690 LVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVHSD 869
LVN+ QPQARVVVLGLLPRGQHPNPLREKNR+VNELVRAALAG+PRAHFLDADPGFVHSD
Sbjct: 124 LVNKLQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGYPRAHFLDADPGFVHSD 183
Query: 870 GTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQG 992
GTISHHDMYDYLHLSRLGYTPVC QDQGQG
Sbjct: 184 GTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQG 224
>ref|NP_032801.2| platelet-activating factor acetylhydrolase IB subunit beta [Mus
musculus].
Length = 229
Score = 297 bits (760), Expect = 1e-80
Identities = 134/202 (66%), Positives = 167/202 (82%)
Frame = +3
Query: 333 EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 512
+ NPA+ P +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIWRELFS
Sbjct: 5 DSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFS 64
Query: 513 PLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVHL 692
PLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+AIV L
Sbjct: 65 PLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQL 124
Query: 693 VNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVHSDG 872
+N RQPQA+++VLGLLPRG+ PNPLR+KN +VN+L++ +L LD D GFVHSDG
Sbjct: 125 INTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDIDGGFVHSDG 184
Query: 873 TISHHDMYDYLHLSRLGYTPVC 938
IS HDM+D+LHL+ GY +C
Sbjct: 185 AISCHDMFDFLHLTGGGYAKIC 206
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,296,683
Number of extensions: 1269479
Number of successful extensions: 5696
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5663
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013645
(1079 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139412.1| platelet-activating factor acetylhydrolase I... 430 e-120
Alignment gi|NP_001139411.1| platelet-activating factor acetylhydrolase I... 430 e-120
Alignment gi|NP_002564.1| platelet-activating factor acetylhydrolase IB s... 430 e-120
Alignment gi|NP_002563.1| platelet-activating factor acetylhydrolase IB s... 297 1e-80
Alignment gi|NP_001171675.1| platelet-activating factor acetylhydrolase I... 216 4e-56
Alignment gi|NP_001171676.1| platelet-activating factor acetylhydrolase I... 213 2e-55
Alignment gi|NP_001171677.1| platelet-activating factor acetylhydrolase I... 207 1e-53
>ref|NP_001139412.1| platelet-activating factor acetylhydrolase IB subunit gamma [Homo
sapiens].
Length = 231
Score = 430 bits (1105), Expect = e-120
Identities = 206/223 (92%), Positives = 208/223 (93%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MS EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
LFSPLHALNFGIGGD TQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61 LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
V LVN+RQPQARVVVLGLLPRGQHPNPLREKNR+VNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQG 992
SDGTISHHDMYDYLHLSRLGYTPVC QDQGQG
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQG 223
>ref|NP_001139411.1| platelet-activating factor acetylhydrolase IB subunit gamma [Homo
sapiens].
Length = 231
Score = 430 bits (1105), Expect = e-120
Identities = 206/223 (92%), Positives = 208/223 (93%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MS EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
LFSPLHALNFGIGGD TQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61 LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
V LVN+RQPQARVVVLGLLPRGQHPNPLREKNR+VNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQG 992
SDGTISHHDMYDYLHLSRLGYTPVC QDQGQG
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQG 223
>ref|NP_002564.1| platelet-activating factor acetylhydrolase IB subunit gamma [Homo
sapiens].
Length = 231
Score = 430 bits (1105), Expect = e-120
Identities = 206/223 (92%), Positives = 208/223 (93%)
Frame = +3
Query: 324 MSEEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 503
MS EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
Query: 504 LFSPLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 683
LFSPLHALNFGIGGD TQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61 LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
Query: 684 VHLVNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 863
V LVN+RQPQARVVVLGLLPRGQHPNPLREKNR+VNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180
Query: 864 SDGTISHHDMYDYLHLSRLGYTPVCXXXXXXXXXXXXQDQGQG 992
SDGTISHHDMYDYLHLSRLGYTPVC QDQGQG
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQG 223
>ref|NP_002563.1| platelet-activating factor acetylhydrolase IB subunit beta isoform
a [Homo sapiens].
Length = 229
Score = 297 bits (761), Expect = 1e-80
Identities = 134/202 (66%), Positives = 167/202 (82%)
Frame = +3
Query: 333 EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 512
+ NPA+ P +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIWRELFS
Sbjct: 5 DSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFS 64
Query: 513 PLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVHL 692
PLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+AIV L
Sbjct: 65 PLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQL 124
Query: 693 VNQRQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVHSDG 872
+N RQPQA+++VLGLLPRG+ PNPLR+KN +VN+L++ +L LD D GFVHSDG
Sbjct: 125 INTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDG 184
Query: 873 TISHHDMYDYLHLSRLGYTPVC 938
IS HDM+D+LHL+ GY +C
Sbjct: 185 AISCHDMFDFLHLTGGGYAKIC 206
>ref|NP_001171675.1| platelet-activating factor acetylhydrolase IB subunit beta isoform
b [Homo sapiens].
Length = 202
Score = 216 bits (549), Expect = 4e-56
Identities = 96/134 (71%), Positives = 118/134 (88%)
Frame = +3
Query: 333 EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 512
+ NPA+ P +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIWRELFS
Sbjct: 5 DSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFS 64
Query: 513 PLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVHL 692
PLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+AIV L
Sbjct: 65 PLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQL 124
Query: 693 VNQRQPQARVVVLG 734
+N RQPQA+++VLG
Sbjct: 125 INTRQPQAKIIVLG 138
>ref|NP_001171676.1| platelet-activating factor acetylhydrolase IB subunit beta isoform
c [Homo sapiens].
Length = 155
Score = 213 bits (543), Expect = 2e-55
Identities = 95/133 (71%), Positives = 117/133 (87%)
Frame = +3
Query: 333 EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 512
+ NPA+ P +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIWRELFS
Sbjct: 5 DSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFS 64
Query: 513 PLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVHL 692
PLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+AIV L
Sbjct: 65 PLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQL 124
Query: 693 VNQRQPQARVVVL 731
+N RQPQA+++VL
Sbjct: 125 INTRQPQAKIIVL 137
>ref|NP_001171677.1| platelet-activating factor acetylhydrolase IB subunit beta isoform
d [Homo sapiens].
Length = 132
Score = 207 bits (527), Expect = 1e-53
Identities = 93/128 (72%), Positives = 112/128 (87%)
Frame = +3
Query: 333 EENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 512
+ NPA+ P +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIWRELFS
Sbjct: 5 DSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFS 64
Query: 513 PLHALNFGIGGDNTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVHL 692
PLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+AIV L
Sbjct: 65 PLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQL 124
Query: 693 VNQRQPQA 716
+N RQPQA
Sbjct: 125 INTRQPQA 132
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,090,594
Number of extensions: 1532320
Number of successful extensions: 7275
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7221
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013645
(1079 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 793 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 793 bits (400), Expect = 0.0
Identities = 400/400 (100%)
Strand = Plus / Plus
Query: 2 cccacgcccccggtgtccgggtgtgccagccgccaccactgcccgagagtgtgcggcccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45530010 cccacgcccccggtgtccgggtgtgccagccgccaccactgcccgagagtgtgcggcccg 45530069
Query: 62 gtcaggaagcgccgaacgagcccgctgcacggccatcgtgggggaagcaaggcttcttag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45530070 gtcaggaagcgccgaacgagcccgctgcacggccatcgtgggggaagcaaggcttcttag 45530129
Query: 122 ttccaccacccctcctaagtgaaggtttccgccccgggagaggaggtggcgcccagcctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45530130 ttccaccacccctcctaagtgaaggtttccgccccgggagaggaggtggcgcccagcctc 45530189
Query: 182 ggccgtcgccttccgctggagtgcaggctttgggaccgtccattgttgcctgagcgtagg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45530190 ggccgtcgccttccgctggagtgcaggctttgggaccgtccattgttgcctgagcgtagg 45530249
Query: 242 ggtgggcgtggcgtctccacctcctccgggaacacactcgggcccacagcactcgctcgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45530250 ggtgggcgtggcgtctccacctcctccgggaacacactcgggcccacagcactcgctcgt 45530309
Query: 302 cctgcggagctgcggcgccaagatgagcgaagaggagaacccagcgagcaagcccacgcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45530310 cctgcggagctgcggcgccaagatgagcgaagaggagaacccagcgagcaagcccacgcc 45530369
Query: 362 ggtgcaggacgtgcagggcgacgggcgctggatgtccctg 401
||||||||||||||||||||||||||||||||||||||||
Sbjct: 45530370 ggtgcaggacgtgcagggcgacgggcgctggatgtccctg 45530409
Score = 793 bits (400), Expect = 0.0
Identities = 400/400 (100%)
Strand = Plus / Plus
Query: 2 cccacgcccccggtgtccgggtgtgccagccgccaccactgcccgagagtgtgcggcccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45556130 cccacgcccccggtgtccgggtgtgccagccgccaccactgcccgagagtgtgcggcccg 45556189
Query: 62 gtcaggaagcgccgaacgagcccgctgcacggccatcgtgggggaagcaaggcttcttag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45556190 gtcaggaagcgccgaacgagcccgctgcacggccatcgtgggggaagcaaggcttcttag 45556249
Query: 122 ttccaccacccctcctaagtgaaggtttccgccccgggagaggaggtggcgcccagcctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45556250 ttccaccacccctcctaagtgaaggtttccgccccgggagaggaggtggcgcccagcctc 45556309
Query: 182 ggccgtcgccttccgctggagtgcaggctttgggaccgtccattgttgcctgagcgtagg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45556310 ggccgtcgccttccgctggagtgcaggctttgggaccgtccattgttgcctgagcgtagg 45556369
Query: 242 ggtgggcgtggcgtctccacctcctccgggaacacactcgggcccacagcactcgctcgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45556370 ggtgggcgtggcgtctccacctcctccgggaacacactcgggcccacagcactcgctcgt 45556429
Query: 302 cctgcggagctgcggcgccaagatgagcgaagaggagaacccagcgagcaagcccacgcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45556430 cctgcggagctgcggcgccaagatgagcgaagaggagaacccagcgagcaagcccacgcc 45556489
Query: 362 ggtgcaggacgtgcagggcgacgggcgctggatgtccctg 401
||||||||||||||||||||||||||||||||||||||||
Sbjct: 45556490 ggtgcaggacgtgcagggcgacgggcgctggatgtccctg 45556529
Score = 658 bits (332), Expect = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus
Query: 731 gggcctgcttcctcggggtcagcaccccaatccactccgtgagaaaaaccgacgggtgaa 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45532222 gggcctgcttcctcggggtcagcaccccaatccactccgtgagaaaaaccgacgggtgaa 45532281
Query: 791 tgaactggtacgagcggcattggctggccacccacgggcccactttctggatgcagaccc 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45532282 tgaactggtacgagcggcattggctggccacccacgggcccactttctggatgcagaccc 45532341
Query: 851 tggctttgtgcactcagatggaaccataagccaccatgacatgtatgattacctgcatct 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45532342 tggctttgtgcactcagatggaaccataagccaccatgacatgtatgattacctgcatct 45532401
Query: 911 gagccgtctggggtacacacctgtttgccgggccctgcactccctgcttctgcgtctgct 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45532402 gagccgtctggggtacacacctgtttgccgggccctgcactccctgcttctgcgtctgct 45532461
Query: 971 ggcccaagaccagggacagggttttgtccccccaccagagcctgcaccctaagcatctgc 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45532462 ggcccaagaccagggacagggttttgtccccccaccagagcctgcaccctaagcatctgc 45532521
Query: 1031 cttcctgctacattaaattctcattcttcagt 1062
||||||||||||||||||||||||||||||||
Sbjct: 45532522 cttcctgctacattaaattctcattcttcagt 45532553
Score = 658 bits (332), Expect = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus
Query: 731 gggcctgcttcctcggggtcagcaccccaatccactccgtgagaaaaaccgacgggtgaa 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558342 gggcctgcttcctcggggtcagcaccccaatccactccgtgagaaaaaccgacgggtgaa 45558401
Query: 791 tgaactggtacgagcggcattggctggccacccacgggcccactttctggatgcagaccc 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558402 tgaactggtacgagcggcattggctggccacccacgggcccactttctggatgcagaccc 45558461
Query: 851 tggctttgtgcactcagatggaaccataagccaccatgacatgtatgattacctgcatct 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558462 tggctttgtgcactcagatggaaccataagccaccatgacatgtatgattacctgcatct 45558521
Query: 911 gagccgtctggggtacacacctgtttgccgggccctgcactccctgcttctgcgtctgct 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558522 gagccgtctggggtacacacctgtttgccgggccctgcactccctgcttctgcgtctgct 45558581
Query: 971 ggcccaagaccagggacagggttttgtccccccaccagagcctgcaccctaagcatctgc 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558582 ggcccaagaccagggacagggttttgtccccccaccagagcctgcaccctaagcatctgc 45558641
Query: 1031 cttcctgctacattaaattctcattcttcagt 1062
||||||||||||||||||||||||||||||||
Sbjct: 45558642 cttcctgctacattaaattctcattcttcagt 45558673
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 607 agattgtggtggtctgggtgggtactaacaaccacgggcacactgcggagcaggtgactg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45557738 agattgtggtggtctgggtgggtactaacaaccacgggcacactgcggagcaggtgactg 45557797
Query: 667 gcggcatcaaggccattgtgcatctggtgaaccagcggcagccccaggcccgagtcgtgg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45557798 gcggcatcaaggccattgtgcatctggtgaaccagcggcagccccaggcccgagtcgtgg 45557857
Query: 727 tgctgg 732
||||||
Sbjct: 45557858 tgctgg 45557863
Score = 242 bits (122), Expect = 3e-61
Identities = 125/126 (99%)
Strand = Plus / Plus
Query: 607 agattgtggtggtctgggtgggtactaacaaccacgggcacactgcggagcaggtgactg 666
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 45531618 agattgtggtggtctgggtgggtactaacaaccacgggcacactgcagagcaggtgactg 45531677
Query: 667 gcggcatcaaggccattgtgcatctggtgaaccagcggcagccccaggcccgagtcgtgg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45531678 gcggcatcaaggccattgtgcatctggtgaaccagcggcagccccaggcccgagtcgtgg 45531737
Query: 727 tgctgg 732
||||||
Sbjct: 45531738 tgctgg 45531743
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 490 agatctggcgggagctcttttcccctctgcatgcacttaactttggcattggtggtgaca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45531424 agatctggcgggagctcttttcccctctgcatgcacttaactttggcattggtggtgaca 45531483
Query: 550 acacgcagcatgtgctgtggcgtctggagaatggggagctggaacacatccgacccaag 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45531484 acacgcagcatgtgctgtggcgtctggagaatggggagctggaacacatccgacccaag 45531542
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 490 agatctggcgggagctcttttcccctctgcatgcacttaactttggcattggtggtgaca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45557544 agatctggcgggagctcttttcccctctgcatgcacttaactttggcattggtggtgaca 45557603
Query: 550 acacgcagcatgtgctgtggcgtctggagaatggggagctggaacacatccgacccaag 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45557604 acacgcagcatgtgctgtggcgtctggagaatggggagctggaacacatccgacccaag 45557662
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 401 gcaccatcggttcgtagccgacagcaaagataaggaacccgaagtcgtcttcatcgggga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45530606 gcaccatcggttcgtagccgacagcaaagataaggaacccgaagtcgtcttcatcgggga 45530665
Query: 461 ctccttggttcagctcatgcaccagtgtgag 491
|||||||||||||||||||||||||||||||
Sbjct: 45530666 ctccttggttcagctcatgcaccagtgtgag 45530696
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 401 gcaccatcggttcgtagccgacagcaaagataaggaacccgaagtcgtcttcatcgggga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45556726 gcaccatcggttcgtagccgacagcaaagataaggaacccgaagtcgtcttcatcgggga 45556785
Query: 461 ctccttggttcagctcatgcaccagtgtgag 491
|||||||||||||||||||||||||||||||
Sbjct: 45556786 ctccttggttcagctcatgcaccagtgtgag 45556816
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,696,351
Number of extensions: 115
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 10
Length of query: 1079
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1058
Effective length of database: 2,808,413,156
Effective search space: 2971301119048
Effective search space used: 2971301119048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)