Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013649
(1051 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533075.2| PREDICTED: similar to Biliverdin reductase A pr... 459 e-129
>ref|XP_533075.2| PREDICTED: similar to Biliverdin reductase A precursor (Biliverdin-IX
alpha-reductase) (BVR A) [Canis familiaris].
Length = 511
Score = 459 bits (1182), Expect = e-129
Identities = 234/269 (86%), Positives = 244/269 (90%)
Frame = +1
Query: 241 IRDLRSPNASSEFLNLIGFVSRRELGSIEEVKQISLEDALSSQEVEVAFICSESSSHEDY 420
IRDLR+P+ASS FLNLIGFVSRRELG+ +EV+QISLEDALSSQEVEVA+ICSESSSH DY
Sbjct: 239 IRDLRNPHASSAFLNLIGFVSRRELGNTDEVQQISLEDALSSQEVEVAYICSESSSHADY 298
Query: 421 IRQFLNAGKHVLVEYPMTLSWAAAKDLWELAEQKGKXXXXXXXXXXXXXFAFLKKEVVGK 600
IRQFLNAGKHVLVEYPMTLSWA A+DLW LAEQKGK FAFLKKEVVGK
Sbjct: 299 IRQFLNAGKHVLVEYPMTLSWAEAQDLWTLAEQKGKVLHEEHVELLMEEFAFLKKEVVGK 358
Query: 601 DLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLFGELSLVSATLEERKEDQYMKMTV 780
DLLKGSLLFTAGPLEE RFGFPAFSGISRLTWLVSLFGELSLVSATLEE+KEDQYMKMTV
Sbjct: 359 DLLKGSLLFTAGPLEEERFGFPAFSGISRLTWLVSLFGELSLVSATLEEQKEDQYMKMTV 418
Query: 781 CLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLENMPNVGINKNIFLKDQKIFVQKLL 960
CLETENK PLTWIEEK PGLKRNRHLSFHFKSGSLENMPNVG+NKNIFLKDQ IFVQKLL
Sbjct: 419 CLETENKRPLTWIEEKGPGLKRNRHLSFHFKSGSLENMPNVGVNKNIFLKDQNIFVQKLL 478
Query: 961 GQVSEKELAAEKKRILHCL*LAGEIQKHC 1047
GQ SEKELAAEKKRILHCL LA EIQK+C
Sbjct: 479 GQFSEKELAAEKKRILHCLWLAEEIQKYC 507
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,261,823
Number of extensions: 1316296
Number of successful extensions: 7266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7221
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013649
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013649
(1051 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091040.1| biliverdin reductase A [Bos taurus]. 476 e-134
>ref|NP_001091040.1| biliverdin reductase A [Bos taurus].
Length = 296
Score = 476 bits (1224), Expect = e-134
Identities = 245/293 (83%), Positives = 253/293 (86%)
Frame = +1
Query: 172 MDAEPQXXXXXXXXXXXXXXXXXIRDLRSPNASSEFLNLIGFVSRRELGSIEEVKQISLE 351
M+ EP+ +RDLR+P+ASS FLNLIGFVSRRELGSI+EV QISLE
Sbjct: 1 MNTEPERKFGVVVVGVGRAGSVRMRDLRNPHASSAFLNLIGFVSRRELGSIDEVPQISLE 60
Query: 352 DALSSQEVEVAFICSESSSHEDYIRQFLNAGKHVLVEYPMTLSWAAAKDLWELAEQKGKX 531
DALSSQEVEVAFICSESSSHEDYIRQFLNAGKHVLVEYPMTLSW AAKDLWELAEQKGK
Sbjct: 61 DALSSQEVEVAFICSESSSHEDYIRQFLNAGKHVLVEYPMTLSWVAAKDLWELAEQKGKV 120
Query: 532 XXXXXXXXXXXXFAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLF 711
FAFLKKEVVGKDLLKGSLLFTA PLEE RFGFPAFSGISRLTWLVSLF
Sbjct: 121 LHEEHVELLMEEFAFLKKEVVGKDLLKGSLLFTAAPLEEERFGFPAFSGISRLTWLVSLF 180
Query: 712 GELSLVSATLEERKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLEN 891
GELSLVSATLEERKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNR LSFHF+SGSLEN
Sbjct: 181 GELSLVSATLEERKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRRLSFHFRSGSLEN 240
Query: 892 MPNVGINKNIFLKDQKIFVQKLLGQVSEKELAAEKKRILHCL*LAGEIQKHCC 1050
MPNVGINKNIFLKDQ IFVQKLLGQ SE+ELAAEKKRILHCL LAGEIQKHCC
Sbjct: 241 MPNVGINKNIFLKDQNIFVQKLLGQFSEEELAAEKKRILHCLWLAGEIQKHCC 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,387,397
Number of extensions: 1276738
Number of successful extensions: 7490
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7426
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013649
(1051 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134937.1| PREDICTED: biliverdin reductase A-like [Sus ... 505 e-143
Alignment gi|XP_003134938.2| PREDICTED: biliverdin reductase A-like [Sus ... 321 5e-88
>ref|XP_003134937.1| PREDICTED: biliverdin reductase A-like [Sus scrofa].
Length = 296
Score = 505 bits (1301), Expect = e-143
Identities = 261/293 (89%), Positives = 262/293 (89%)
Frame = +1
Query: 172 MDAEPQXXXXXXXXXXXXXXXXXIRDLRSPNASSEFLNLIGFVSRRELGSIEEVKQISLE 351
MDAEPQ IRDLRSPNASSEFLNLIGFVSRRELGSIEEVKQISLE
Sbjct: 1 MDAEPQRRFGVVVVGVGRAGSVRIRDLRSPNASSEFLNLIGFVSRRELGSIEEVKQISLE 60
Query: 352 DALSSQEVEVAFICSESSSHEDYIRQFLNAGKHVLVEYPMTLSWAAAKDLWELAEQKGKX 531
DALSSQEVEVAFICSESSSHEDYIRQFLNAGKHVLVEYPMTLSWAAAKDLWELAE+KGK
Sbjct: 61 DALSSQEVEVAFICSESSSHEDYIRQFLNAGKHVLVEYPMTLSWAAAKDLWELAERKGKV 120
Query: 532 XXXXXXXXXXXXFAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLF 711
FAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLF
Sbjct: 121 LHEEHVELLMEEFAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLF 180
Query: 712 GELSLVSATLEERKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLEN 891
GELSLVSATLEERKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLEN
Sbjct: 181 GELSLVSATLEERKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLEN 240
Query: 892 MPNVGINKNIFLKDQKIFVQKLLGQVSEKELAAEKKRILHCL*LAGEIQKHCC 1050
MPNVGINKNIFLKDQKIFVQKLLGQVSEKELAAEKKRILHCL LAGEIQKHCC
Sbjct: 241 MPNVGINKNIFLKDQKIFVQKLLGQVSEKELAAEKKRILHCLWLAGEIQKHCC 293
>ref|XP_003134938.2| PREDICTED: biliverdin reductase A-like [Sus scrofa].
Length = 209
Score = 321 bits (822), Expect = 5e-88
Identities = 160/161 (99%), Positives = 160/161 (99%)
Frame = +1
Query: 568 FAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLFGELSLVSATLEE 747
FAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLFGELSLVSATLEE
Sbjct: 46 FAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLFGELSLVSATLEE 105
Query: 748 RKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLENMPNVGINKNIFL 927
RKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLENMPNVGINKNIFL
Sbjct: 106 RKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLENMPNVGINKNIFL 165
Query: 928 KDQKIFVQKLLGQVSEKELAAEKKRILHCL*LAGEIQKHCC 1050
KDQKIFVQKLLGQVSEKELAAEKKRILHCL LAGEIQKHCC
Sbjct: 166 KDQKIFVQKLLGQVSEKELAAEKKRILHCLWLAGEIQKHCC 206
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,756,590
Number of extensions: 827504
Number of successful extensions: 4902
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4846
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013649
(1051 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080954.4| biliverdin reductase A precursor [Mus musculus]. 408 e-114
>ref|NP_080954.4| biliverdin reductase A precursor [Mus musculus].
Length = 295
Score = 408 bits (1048), Expect = e-114
Identities = 208/292 (71%), Positives = 237/292 (81%)
Frame = +1
Query: 172 MDAEPQXXXXXXXXXXXXXXXXXIRDLRSPNASSEFLNLIGFVSRRELGSIEEVKQISLE 351
M EP+ IRDL+ P+ SS FLNLIG+VSRRELGS++ V+QISLE
Sbjct: 1 MSTEPKRKFGVVVVGVGRAGSVRIRDLKDPH-SSAFLNLIGYVSRRELGSLDNVRQISLE 59
Query: 352 DALSSQEVEVAFICSESSSHEDYIRQFLNAGKHVLVEYPMTLSWAAAKDLWELAEQKGKX 531
DAL SQEV+VA+IC+ESSSHEDYIRQFL AGKHVLVEYPM LS+AAA++LWELA QKG+
Sbjct: 60 DALRSQEVDVAYICTESSSHEDYIRQFLQAGKHVLVEYPMALSFAAAQELWELAAQKGRV 119
Query: 532 XXXXXXXXXXXXFAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLF 711
F FLK+EV GK+LLKGSL FTA PLEE +FGFPAFSGISRLTWLVSLF
Sbjct: 120 LHEEHIELLMEEFEFLKREVAGKELLKGSLRFTASPLEEEKFGFPAFSGISRLTWLVSLF 179
Query: 712 GELSLVSATLEERKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLEN 891
GELSL+SAT+E RKEDQYMKMTV LET+NKSPL+WIEEK PGLKRNRH+S HFKSGSLE
Sbjct: 180 GELSLISATMENRKEDQYMKMTVQLETQNKSPLSWIEEKGPGLKRNRHISIHFKSGSLEE 239
Query: 892 MPNVGINKNIFLKDQKIFVQKLLGQVSEKELAAEKKRILHCL*LAGEIQKHC 1047
+PNVG+NKNIFLKDQ IF+QKLLGQVS ++LAAEKKRILHCL LA +IQ+ C
Sbjct: 240 VPNVGVNKNIFLKDQDIFIQKLLGQVSAEDLAAEKKRILHCLELASDIQRLC 291
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,597,525
Number of extensions: 1053668
Number of successful extensions: 5515
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5441
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013649
(1051 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000703.2| biliverdin reductase A precursor [Homo sapiens]. 459 e-129
>ref|NP_000703.2| biliverdin reductase A precursor [Homo sapiens].
Length = 296
Score = 459 bits (1180), Expect = e-129
Identities = 237/293 (80%), Positives = 252/293 (86%)
Frame = +1
Query: 172 MDAEPQXXXXXXXXXXXXXXXXXIRDLRSPNASSEFLNLIGFVSRRELGSIEEVKQISLE 351
M+AEP+ +RDLR+P+ SS FLNLIGFVSRRELGSI+ V+QISLE
Sbjct: 1 MNAEPERKFGVVVVGVGRAGSVRMRDLRNPHPSSAFLNLIGFVSRRELGSIDGVQQISLE 60
Query: 352 DALSSQEVEVAFICSESSSHEDYIRQFLNAGKHVLVEYPMTLSWAAAKDLWELAEQKGKX 531
DALSSQEVEVA+ICSESSSHEDYIRQFLNAGKHVLVEYPMTLS AAA++LWELAEQKGK
Sbjct: 61 DALSSQEVEVAYICSESSSHEDYIRQFLNAGKHVLVEYPMTLSLAAAQELWELAEQKGKV 120
Query: 532 XXXXXXXXXXXXFAFLKKEVVGKDLLKGSLLFTAGPLEEGRFGFPAFSGISRLTWLVSLF 711
FAFLKKEVVGKDLLKGSLLFTAGPLEE RFGFPAFSGISRLTWLVSLF
Sbjct: 121 LHEEHVELLMEEFAFLKKEVVGKDLLKGSLLFTAGPLEEERFGFPAFSGISRLTWLVSLF 180
Query: 712 GELSLVSATLEERKEDQYMKMTVCLETENKSPLTWIEEKAPGLKRNRHLSFHFKSGSLEN 891
GELSLVSATLEERKEDQYMKMTVCLETE KSPL+WIEEK PGLKRNR+LSFHFKSGSLEN
Sbjct: 181 GELSLVSATLEERKEDQYMKMTVCLETEKKSPLSWIEEKGPGLKRNRYLSFHFKSGSLEN 240
Query: 892 MPNVGINKNIFLKDQKIFVQKLLGQVSEKELAAEKKRILHCL*LAGEIQKHCC 1050
+PNVG+NKNIFLKDQ IFVQKLLGQ SEKELAAEKKRILHCL LA EIQK+CC
Sbjct: 241 VPNVGVNKNIFLKDQNIFVQKLLGQFSEKELAAEKKRILHCLGLAEEIQKYCC 293
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,266,058
Number of extensions: 1279947
Number of successful extensions: 6757
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6703
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013649
(1051 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 488 e-135
>Sscrofa_Chr18
|| Length = 61220071
Score = 488 bits (246), Expect = e-135
Identities = 249/250 (99%)
Strand = Plus / Minus
Query: 802 agcccgctgacctggattgaggagaaggcacctggcctcaagcgaaacagacatttaagc 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56025666 agcccgctgacctggattgaggagaaggcacctggcctcaagcgaaacagacatttaagc 56025607
Query: 862 ttccatttcaagtctgggtccctggagaatatgccaaatgtaggcatcaataagaatatt 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56025606 ttccatttcaagtctgggtccctggagaatatgccaaatgtaggcatcaataagaatatt 56025547
Query: 922 ttcctgaaggatcaaaagatatttgtccagaaactcttgggccaagtctctgaaaaggag 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56025546 ttcctgaaggatcaaaagatatttgtccagaaactcttgggccaagtctctgaaaaggag 56025487
Query: 982 ctggccgccgagaagaaacgtatcttgcactgcctgtagctggcgggagagatccagaag 1041
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 56025486 ctggccgccgagaagaaacgtatcttgcactgcctgtggctggcgggagagatccagaag 56025427
Query: 1042 cactgctgct 1051
||||||||||
Sbjct: 56025426 cactgctgct 56025417
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 627 cacagctggccctttggaagaggggcggtttggcttccccgccttcagcggcatctctcg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56029121 cacagctggccctttggaagaggggcggtttggcttccccgccttcagcggcatctctcg 56029062
Query: 687 cctgacctggctggtctccctctttggggagctgtcccttgtgtctgcgactctggaaga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56029061 cctgacctggctggtctccctctttggggagctgtcccttgtgtctgcgactctggaaga 56029002
Query: 747 gcggaaggaggatcagtacatgaagatgacggtgtgtctggagacagagaacaaaag 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56029001 gcggaaggaggatcagtacatgaagatgacggtgtgtctggagacagagaacaaaag 56028945
Score = 281 bits (142), Expect = 4e-73
Identities = 145/146 (99%)
Strand = Plus / Minus
Query: 5 cctccctctggctccccgaccccgcgctcccccgagtcctcccgcccagcggccaatccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56079196 cctccctctggctccccgaccccgcgctcccccgagtcctcccgcccagcggccaatccc 56079137
Query: 65 ggctgcgctccggcctgttctctgcgcggtggtggcgccgagcgcggaggctgcccggcg 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 56079136 ggctgcgctccggcctgttctctgcgcggtggtggcgccgagcgcggagactgcccggcg 56079077
Query: 125 agctcaagctttgtgctcagcggcag 150
||||||||||||||||||||||||||
Sbjct: 56079076 agctcaagctttgtgctcagcggcag 56079051
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 303 cagacgagagctggggagcattgaggaggtgaagcagatttctttggaagatgctctttc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56047052 cagacgagagctggggagcattgaggaggtgaagcagatttctttggaagatgctctttc 56046993
Query: 363 cagtcaagaggtcgaggttgcttttatctgcagtgagagctccagccacgaggactacat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56046992 cagtcaagaggtcgaggttgcttttatctgcagtgagagctccagccacgaggactacat 56046933
Query: 423 cagg 426
||||
Sbjct: 56046932 cagg 56046929
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 182 agccccagaggaggtttggcgtggtggtggtgggcgtgggccgagccggctccgtgcgga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56050333 agccccagaggaggtttggcgtggtggtggtgggcgtgggccgagccggctccgtgcgga 56050274
Query: 242 tccgggacctgcggagtcccaacgcttcctccgagttcctgaacctgattggcttcgtgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56050273 tccgggacctgcggagtcccaacgcttcctccgagttcctgaacctgattggcttcgtgt 56050214
Query: 302 ccag 305
||||
Sbjct: 56050213 ccag 56050210
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 522 agggaaagtcctgcatgaggagcacgttgaactcttgatggaggagtttgcgttcctgaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56031950 agggaaagtcctgcatgaggagcacgttgaactcttgatggaggagtttgcgttcctgaa 56031891
Query: 582 aaaagaagtggtggggaaggacctgctgaaagggtctctcctcttcacag 631
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56031890 aaaagaagtggtggggaaggacctgctgaaagggtctctcctcttcacag 56031841
Score = 192 bits (97), Expect = 3e-46
Identities = 100/101 (99%)
Strand = Plus / Minus
Query: 424 aggcagttccttaacgctgggaagcatgtccttgtggaataccccatgacactgtcttgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56044519 aggcagttccttaacgctgggaagcatgtccttgtggaataccccatgacactgtcttgg 56044460
Query: 484 gcagcagcgaaggacctgtgggagctggcggagcagaaagg 524
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 56044459 gcagcagcgaaggacctgtgggagctggcggagcggaaagg 56044419
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 148 cagcttctgcggaaggcgcccaagatggatgcagag 183
||||||||||||||||||||||||||||||||||||
Sbjct: 56064408 cagcttctgcggaaggcgcccaagatggatgcagag 56064373
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,654,841
Number of extensions: 148
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 8
Length of query: 1051
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1030
Effective length of database: 2,808,413,156
Effective search space: 2892665550680
Effective search space used: 2892665550680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)