Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013652
(1182 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus ... 295 6e-80
Alignment gi|XP_849241.1| PREDICTED: similar to Proteasome subunit beta t... 188 8e-48
Alignment gi|NP_001041550.1| proteasome subunit beta type-8 precursor [Ca... 58 2e-08
>ref|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus familiaris].
Length = 209
Score = 295 bits (755), Expect = 6e-80
Identities = 151/207 (72%), Positives = 159/207 (76%)
Frame = +1
Query: 292 RAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXXXX 471
RAGEVHTGTTIMAVEFD EAVVNR F+KLSPLH IYC
Sbjct: 3 RAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRAFNKLSPLHQHIYCALSGSAADA 62
Query: 472 XXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVY 651
YQLELHG+ELEEPPLVLAAANVVRNISYKYREDLSAHLM+AGWD+R+GGQVY
Sbjct: 63 QAMADMAAYQLELHGLELEEPPLVLAAANVVRNISYKYREDLSAHLMIAGWDRRDGGQVY 122
Query: 652 GTMGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGV 831
GTMGGML RQPFA VDAAYKPGMSPEECR FTTNAIALAMNRDGSSGGV
Sbjct: 123 GTMGGMLTRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRSFTTNAIALAMNRDGSSGGV 182
Query: 832 IYLVTITAAGVDHRVILGNELPKFYDE 912
I+LVTITAAGVD++VILGNELPKFYDE
Sbjct: 183 IHLVTITAAGVDYQVILGNELPKFYDE 209
>ref|XP_849241.1| PREDICTED: similar to Proteasome subunit beta type 6 precursor
(Proteasome delta chain) (Macropain delta chain)
(Multicatalytic endopeptidase complex delta chain)
(Proteasome subunit Y) [Canis familiaris].
Length = 239
Score = 188 bits (478), Expect = 8e-48
Identities = 96/202 (47%), Positives = 125/202 (61%), Gaps = 1/202 (0%)
Frame = +1
Query: 301 EVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXXXXXXX 480
EV TGTTIMAV+F+ + NRV DKL+P+H RI+C
Sbjct: 30 EVSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89
Query: 481 XXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT- 657
YQL H +EL EPPLV AA++ + + Y+YREDL A +++AGWD +EGGQVY
Sbjct: 90 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVP 149
Query: 658 MGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIY 837
MGGM++RQ FA VDA Y+ GM+ EEC +FT NA+ALAM RDGSSGGVI
Sbjct: 150 MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 209
Query: 838 LVTITAAGVDHRVILGNELPKF 903
L I +GV+ +V+LG+++PKF
Sbjct: 210 LAAIAESGVERQVLLGDQIPKF 231
>ref|NP_001041550.1| proteasome subunit beta type-8 precursor [Canis lupus familiaris].
Length = 276
Score = 57.8 bits (138), Expect = 2e-08
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 541 VLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXX 717
V AA+ ++ N+ Y+YR DLS M+ GWD++ G Y G +
Sbjct: 148 VSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYA 207
Query: 718 XXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVI 834
+D+ Y+P +SPEE AI A +RD SGG+I
Sbjct: 208 YGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGII 246
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,580,517
Number of extensions: 1755397
Number of successful extensions: 5945
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5911
Number of HSP's successfully gapped: 3
Length of query: 394
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 289
Effective length of database: 15,374,224
Effective search space: 4443150736
Effective search space used: 4443150736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013652
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013652
(1182 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029560.1| proteasome subunit beta type-9 precursor [Bo... 320 2e-87
Alignment gi|NP_001029541.1| proteasome subunit beta type-6 precursor [Bo... 196 4e-50
Alignment gi|NP_001029212.1| proteasome subunit beta type-10 precursor [B... 53 6e-07
Alignment gi|NP_001033616.1| proteasome subunit beta type-7 precursor [Bo... 49 9e-06
>ref|NP_001029560.1| proteasome subunit beta type-9 precursor [Bos taurus].
Length = 219
Score = 320 bits (820), Expect = 2e-87
Identities = 164/219 (74%), Positives = 167/219 (76%)
Frame = +1
Query: 256 MLRAGGPTGDLPRAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHR 435
MLR G P GDLPRAGEVHTGTTIMAVEFD EAVVNRVFDKLSPLH
Sbjct: 1 MLRTGAPNGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQH 60
Query: 436 IYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV 615
IYC YQLELHGMELEEPPLVLAAANVVRNI+YKYREDLSAHLMV
Sbjct: 61 IYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMV 120
Query: 616 AGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIA 795
AGWDQREGGQVYGTM GMLIRQPFA VDAAYKPGMSPEECRRFTTNAIA
Sbjct: 121 AGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180
Query: 796 LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 912
LAM RDGSSGGVIYL TIT AGVDHRVILG+ELP+FYDE
Sbjct: 181 LAMKRDGSSGGVIYLATITGAGVDHRVILGDELPRFYDE 219
>ref|NP_001029541.1| proteasome subunit beta type-6 precursor [Bos taurus].
Length = 239
Score = 196 bits (497), Expect = 4e-50
Identities = 105/223 (47%), Positives = 132/223 (59%), Gaps = 3/223 (1%)
Frame = +1
Query: 244 RGTGMLRAGGPTGDLP--RAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKL 417
RGT A GP P EV TGTTIMAV+FD + NRV DKL
Sbjct: 9 RGTRPAPAWGPEAIAPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKL 68
Query: 418 SPLHHRIYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDL 597
+P+H RI+C YQL H +EL EPPLV AA++ + + Y+YREDL
Sbjct: 69 TPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDL 128
Query: 598 SAHLMVAGWDQREGGQVYGT-MGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRR 774
A +++AGWD +EGGQVY MGGM++RQPFA VDA Y+ GM+ EEC +
Sbjct: 129 MAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQ 188
Query: 775 FTTNAIALAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKF 903
FT NA+ALAM RDGSSGGVI L I GV+ +V+LG+++PKF
Sbjct: 189 FTANALALAMERDGSSGGVIRLAAIAEPGVERQVLLGDQIPKF 231
>ref|NP_001029212.1| proteasome subunit beta type-10 precursor [Bos taurus].
Length = 273
Score = 52.8 bits (125), Expect = 6e-07
Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 1/185 (0%)
Frame = +1
Query: 310 TGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXXXXXXXXXX 489
TGTTI + F V +++ +K+ + +IYC
Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRM 97
Query: 490 XXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTMG-G 666
+ELH + V ++R ++Y+ + A L+V G D G Q+Y G
Sbjct: 98 AASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFT-GPQLYSVHPHG 156
Query: 667 MLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIYLVT 846
R PF ++ ++P M+ E + AI + D SGG +
Sbjct: 157 SYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACV 216
Query: 847 ITAAG 861
ITAAG
Sbjct: 217 ITAAG 221
>ref|NP_001033616.1| proteasome subunit beta type-7 precursor [Bos taurus].
Length = 277
Score = 48.9 bits (115), Expect = 9e-06
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 1/187 (0%)
Frame = +1
Query: 310 TGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXXXXXXXXXX 489
TGTTI V + V ++ K+ + IYC
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQL 101
Query: 490 XXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTMG-G 666
LELH + P V+ A +++ + ++Y+ + A L++ G D G +Y G
Sbjct: 102 ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVT-GPHLYSIYPHG 160
Query: 667 MLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIYLVT 846
+ P+ + ++P M EE ++ + AIA + D SG I L
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 847 ITAAGVD 867
I+ + +D
Sbjct: 221 ISKSKLD 227
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,414,204
Number of extensions: 1705853
Number of successful extensions: 5961
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5937
Number of HSP's successfully gapped: 4
Length of query: 394
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 290
Effective length of database: 14,240,222
Effective search space: 4129664380
Effective search space used: 4129664380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013652
(1182 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-li... 343 1e-94
Alignment gi|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa]. 343 1e-94
Alignment gi|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa]. 196 2e-50
Alignment gi|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa]. 49 5e-06
Alignment gi|NP_001090945.1| proteasome subunit beta type-7 precursor [Su... 48 9e-06
>ref|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-like [Sus scrofa].
Length = 219
Score = 343 bits (879), Expect = 1e-94
Identities = 176/219 (80%), Positives = 176/219 (80%)
Frame = +1
Query: 256 MLRAGGPTGDLPRAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHR 435
MLRAGGPTGDLPRAGEVHTGTTIMAVEFD EAVVNRVFDKLSPLHHR
Sbjct: 1 MLRAGGPTGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHR 60
Query: 436 IYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV 615
IYC YQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV
Sbjct: 61 IYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV 120
Query: 616 AGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIA 795
AGWDQREGGQVYGTMGGMLIRQPFA VDAAYKPGMSPEECRRFTTNAIA
Sbjct: 121 AGWDQREGGQVYGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180
Query: 796 LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 912
LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
Sbjct: 181 LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219
>ref|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa].
Length = 219
Score = 343 bits (879), Expect = 1e-94
Identities = 176/219 (80%), Positives = 176/219 (80%)
Frame = +1
Query: 256 MLRAGGPTGDLPRAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHR 435
MLRAGGPTGDLPRAGEVHTGTTIMAVEFD EAVVNRVFDKLSPLHHR
Sbjct: 1 MLRAGGPTGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHR 60
Query: 436 IYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV 615
IYC YQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV
Sbjct: 61 IYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV 120
Query: 616 AGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIA 795
AGWDQREGGQVYGTMGGMLIRQPFA VDAAYKPGMSPEECRRFTTNAIA
Sbjct: 121 AGWDQREGGQVYGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180
Query: 796 LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 912
LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
Sbjct: 181 LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219
>ref|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa].
Length = 241
Score = 196 bits (499), Expect = 2e-50
Identities = 105/223 (47%), Positives = 133/223 (59%), Gaps = 3/223 (1%)
Frame = +1
Query: 244 RGTGMLRAGGPTGDLP--RAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKL 417
RG G+ A GP P EV TGTTIMAV+FD + NRV DKL
Sbjct: 11 RGAGLAPAWGPEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKL 70
Query: 418 SPLHHRIYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDL 597
+P+H RI+C YQL H +EL EPPLV AA++ + + Y+YREDL
Sbjct: 71 TPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDL 130
Query: 598 SAHLMVAGWDQREGGQVYGT-MGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRR 774
A ++VAGWD +EGGQVY MGGM++RQ FA VDA Y+ GM+ EEC +
Sbjct: 131 MAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAIGGSGSSYIYGYVDATYREGMTKEECLQ 190
Query: 775 FTTNAIALAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKF 903
FT NA+ALAM RDGSSGGVI L I +GV+ +V+LG+++PKF
Sbjct: 191 FTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKF 233
>ref|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa].
Length = 273
Score = 48.9 bits (115), Expect = 5e-06
Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 1/185 (0%)
Frame = +1
Query: 310 TGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXXXXXXXXXX 489
TGTTI + F V ++ +K+ + +IYC
Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM 97
Query: 490 XXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-MGG 666
+ELH + P V ++R ++Y+ + A L+V G D G Q+Y G
Sbjct: 98 AASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHPHG 156
Query: 667 MLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIYLVT 846
R PF ++ ++P M+ E + AI + D SGG +
Sbjct: 157 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACV 216
Query: 847 ITAAG 861
I G
Sbjct: 217 IMGTG 221
>ref|NP_001090945.1| proteasome subunit beta type-7 precursor [Sus scrofa].
Length = 277
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 1/187 (0%)
Frame = +1
Query: 310 TGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXXXXXXXXXX 489
TGTTI V + V ++ K+ + IYC
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQL 101
Query: 490 XXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTMG-G 666
LELH + P V+ A +++ + ++Y+ + A L++ G D G +Y G
Sbjct: 102 ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVT-GPHLYSIYPHG 160
Query: 667 MLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIYLVT 846
+ P+ + ++P M EE ++ + AIA + D SG I L
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 847 ITAAGVD 867
I+ + +D
Sbjct: 221 ISKSKLD 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,498,566
Number of extensions: 1100716
Number of successful extensions: 3949
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3923
Number of HSP's successfully gapped: 5
Length of query: 394
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,829,335
Effective search space: 2586995155
Effective search space used: 2586995155
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013652
(1182 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038613.1| proteasome subunit beta type-9 [Mus musculus]. 298 6e-81
Alignment gi|NP_032972.3| proteasome subunit beta type-6 precursor [Mus m... 186 4e-47
Alignment gi|NP_038668.2| proteasome subunit beta type-10 precursor [Mus ... 55 1e-07
Alignment gi|NP_035317.1| proteasome subunit beta type-7 precursor [Mus m... 50 5e-06
Alignment gi|NP_034854.2| proteasome subunit beta type-8 precursor [Mus m... 49 6e-06
>ref|NP_038613.1| proteasome subunit beta type-9 [Mus musculus].
Length = 219
Score = 298 bits (763), Expect = 6e-81
Identities = 155/219 (70%), Positives = 162/219 (73%)
Frame = +1
Query: 256 MLRAGGPTGDLPRAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHR 435
MLRAG PT R EVHTGTTIMAVEFD AVVNRVFDKLSPLH
Sbjct: 1 MLRAGAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQH 60
Query: 436 IYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV 615
I+C YQLELHG+ELEEPPLVLAAANVV+NISYKYREDL AHL+V
Sbjct: 61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120
Query: 616 AGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIA 795
AGWDQ EGGQVYGTMGGMLIRQPF VDAAYKPGM+PEECRRFTT+AI
Sbjct: 121 AGWDQCEGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAIT 180
Query: 796 LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 912
LAMNRDGSSGGVIYLVTITAAGVDHRVILG+ELPKFYDE
Sbjct: 181 LAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219
>ref|NP_032972.3| proteasome subunit beta type-6 precursor [Mus musculus].
Length = 238
Score = 186 bits (471), Expect = 4e-47
Identities = 100/223 (44%), Positives = 130/223 (58%), Gaps = 3/223 (1%)
Frame = +1
Query: 244 RGTGMLRAGGPTGDLP--RAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKL 417
R G A GP P EV TGTTIMAV+F+ + NRV DKL
Sbjct: 8 RRAGSAPAFGPEALTPDWENREVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKL 67
Query: 418 SPLHHRIYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDL 597
+P+H I+C YQL H +EL EPPLV AA++ + + Y+YREDL
Sbjct: 68 TPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDL 127
Query: 598 SAHLMVAGWDQREGGQVYGT-MGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRR 774
A +++AGWD +EGGQVY MGGM++RQ FA VDA Y+ GM+ +EC +
Sbjct: 128 MAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQ 187
Query: 775 FTTNAIALAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKF 903
FT NA+ALAM RDGSSGGVI L I +GV+ +V+LG+++PKF
Sbjct: 188 FTANALALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIPKF 230
>ref|NP_038668.2| proteasome subunit beta type-10 precursor [Mus musculus].
Length = 273
Score = 54.7 bits (130), Expect = 1e-07
Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 1/185 (0%)
Frame = +1
Query: 310 TGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXXXXXXXXXX 489
TGTTI + F V ++ +K+ + +IYC
Sbjct: 38 TGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRM 97
Query: 490 XXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-MGG 666
++ELH + P V ++R ++Y+ + A L+V G D G Q+Y G
Sbjct: 98 AASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHG 156
Query: 667 MLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIYLVT 846
R PF ++ ++P M+ E + AI + D SGG +
Sbjct: 157 SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACV 216
Query: 847 ITAAG 861
ITA G
Sbjct: 217 ITAGG 221
>ref|NP_035317.1| proteasome subunit beta type-7 precursor [Mus musculus].
Length = 277
Score = 49.7 bits (117), Expect = 5e-06
Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 1/195 (0%)
Frame = +1
Query: 286 LPRAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXX 465
LP+A + TGTTI V + V ++ K+ + IYC
Sbjct: 36 LPKARK--TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAA 93
Query: 466 XXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQ 645
LELH + P V+ A +++ + ++Y+ + A L++ G D G
Sbjct: 94 DTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVT-GPH 152
Query: 646 VYGTMG-GMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSS 822
+Y G + P+ + ++P M EE ++ + AIA + D S
Sbjct: 153 LYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGS 212
Query: 823 GGVIYLVTITAAGVD 867
G I L I+ + +D
Sbjct: 213 GSNIDLCVISKSKLD 227
>ref|NP_034854.2| proteasome subunit beta type-8 precursor [Mus musculus].
Length = 276
Score = 49.3 bits (116), Expect = 6e-06
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +1
Query: 541 VLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXX 717
V AA+ ++ N+ +YR LS M+ GWD++ G Y G +
Sbjct: 148 VSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYA 207
Query: 718 XXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVI 834
+D+ Y+ +SPEE AIA A +RD SGGV+
Sbjct: 208 YGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVV 246
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,011,169
Number of extensions: 1418040
Number of successful extensions: 4345
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4334
Number of HSP's successfully gapped: 5
Length of query: 394
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 291
Effective length of database: 12,523,851
Effective search space: 3644440641
Effective search space used: 3644440641
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013652
(1182 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo... 329 3e-90
Alignment gi|NP_002789.1| proteasome subunit beta type-6 precursor [Homo ... 196 5e-50
Alignment gi|NP_002792.1| proteasome subunit beta type-10 precursor [Homo... 55 2e-07
Alignment gi|NP_683720.2| proteasome subunit beta type-8 isoform E2 propr... 52 1e-06
Alignment gi|NP_004150.1| proteasome subunit beta type-8 isoform E1 propr... 52 1e-06
>ref|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo sapiens].
Length = 219
Score = 329 bits (843), Expect = 3e-90
Identities = 169/219 (77%), Positives = 173/219 (78%)
Frame = +1
Query: 256 MLRAGGPTGDLPRAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHR 435
MLRAG PTGDLPRAGEVHTGTTIMAVEFD EAVVNRVFDKLSPLH R
Sbjct: 1 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHER 60
Query: 436 IYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMV 615
IYC YQLELHG+ELEEPPLVLAAANVVRNISYKYREDLSAHLMV
Sbjct: 61 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV 120
Query: 616 AGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIA 795
AGWDQREGGQVYGT+GGML RQPFA VDAAYKPGMSPEECRRFTT+AIA
Sbjct: 121 AGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA 180
Query: 796 LAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 912
LAM+RDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
Sbjct: 181 LAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219
>ref|NP_002789.1| proteasome subunit beta type-6 precursor [Homo sapiens].
Length = 239
Score = 196 bits (497), Expect = 5e-50
Identities = 104/223 (46%), Positives = 133/223 (59%), Gaps = 3/223 (1%)
Frame = +1
Query: 244 RGTGMLRAGGPTGDLP--RAGEVHTGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKL 417
RG G A GP P + EV TGTTIMAV+FD + NRV DKL
Sbjct: 9 RGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKL 68
Query: 418 SPLHHRIYCXXXXXXXXXXXXXXXXXYQLELHGMELEEPPLVLAAANVVRNISYKYREDL 597
+P+H RI+C YQL H +EL EPPLV AA++ + + Y+YREDL
Sbjct: 69 TPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDL 128
Query: 598 SAHLMVAGWDQREGGQVYGT-MGGMLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRR 774
A +++AGWD +EGGQVY MGGM++RQ FA VDA Y+ GM+ EEC +
Sbjct: 129 MAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQ 188
Query: 775 FTTNAIALAMNRDGSSGGVIYLVTITAAGVDHRVILGNELPKF 903
FT NA+ALAM RDGSSGGVI L I +GV+ +V+LG+++PKF
Sbjct: 189 FTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKF 231
>ref|NP_002792.1| proteasome subunit beta type-10 precursor [Homo sapiens].
Length = 273
Score = 54.7 bits (130), Expect = 2e-07
Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 1/185 (0%)
Frame = +1
Query: 310 TGTTIMAVEFDXXXXXXXXXXXXXXEAVVNRVFDKLSPLHHRIYCXXXXXXXXXXXXXXX 489
TGTTI + F V ++ +K+ + +IYC
Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM 97
Query: 490 XXYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-MGG 666
++ELH + P V ++R ++Y+ + A L+V G D G Q+YG G
Sbjct: 98 VASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LTGPQLYGVHPHG 156
Query: 667 MLIRQPFAXXXXXXXXXXXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIYLVT 846
R PF ++ ++P M+ E + A+ + D SGG +
Sbjct: 157 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACV 216
Query: 847 ITAAG 861
IT G
Sbjct: 217 ITKTG 221
>ref|NP_683720.2| proteasome subunit beta type-8 isoform E2 proprotein [Homo
sapiens].
Length = 276
Score = 51.6 bits (122), Expect = 1e-06
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +1
Query: 541 VLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXX 717
V AA+ ++ N+ +YR LS M+ GWD++ G Y G +
Sbjct: 148 VSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYA 207
Query: 718 XXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVI 834
+D+ Y+P +SPEE AIA A +RD SGGV+
Sbjct: 208 YGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVV 246
>ref|NP_004150.1| proteasome subunit beta type-8 isoform E1 proprotein [Homo
sapiens].
Length = 272
Score = 51.6 bits (122), Expect = 1e-06
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +1
Query: 541 VLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGTMGGMLIRQPFAXXXXXXXXX 717
V AA+ ++ N+ +YR LS M+ GWD++ G Y G +
Sbjct: 144 VSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYA 203
Query: 718 XXXVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVI 834
+D+ Y+P +SPEE AIA A +RD SGGV+
Sbjct: 204 YGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVV 242
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,548,719
Number of extensions: 1717443
Number of successful extensions: 5607
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5588
Number of HSP's successfully gapped: 5
Length of query: 394
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 289
Effective length of database: 14,835,944
Effective search space: 4287587816
Effective search space used: 4287587816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013652
(1182 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 739 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 739 bits (373), Expect = 0.0
Identities = 392/397 (98%), Gaps = 1/397 (0%)
Strand = Plus / Plus
Query: 787 gctattgctctggccatgaaccgggatggctctagcgggggtgtcatctatctggtcacc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288607 gctattgctctggccatgaaccgggatggctctagcgggggtgtcatctatctggtcacc 29288666
Query: 847 attacagctgctggtgtggaccatcgagtaatcttgggcaatgagctgccaaaattctat 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288667 attacagctgctggtgtggaccatcgagtaatcttgggcaatgagctgccaaaattctat 29288726
Query: 907 gacgagtgactcttcctcagacctccctgctgtattttgtaataaacgttctgggcccgg 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288727 gacgagtgactcttcctcagacctccctgctgtattttgtaataaacgttctgggcccgg 29288786
Query: 967 aaaatggtatggtcagtgggtgctcggcgagatgaagcttgggaagggagcttcttccct 1026
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288787 aacctggtatggtcagtgggtgctcggcgagatgaagcttgggaagggagcttcttccct 29288846
Query: 1027 cacagatggtagcttatcctttttattcttttgtgcccagcttgcaaacatctttcccag 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288847 cacagatggtagcttatcctttttattcttttgtgcccagcttgcaaacatctttcccag 29288906
Query: 1087 aggaaagtgcatcgggaggatgctggaactaggaagaaccctatacgtgacaggccatca 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288907 aggaaagtgcatcgggaggatgctggaactaggaagaaccctatacgtgacaggccatca 29288966
Query: 1147 tgtattgagtgattttgaaatatt-taaatgatataa 1182
||| |||||||||||||||||||| |||||||||||
Sbjct: 29288967 tgttttgagtgattttgaaatattaaaaatgatataa 29289003
Score = 739 bits (373), Expect = 0.0
Identities = 392/397 (98%), Gaps = 1/397 (0%)
Strand = Plus / Plus
Query: 787 gctattgctctggccatgaaccgggatggctctagcgggggtgtcatctatctggtcacc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29443728 gctattgctctggccatgaaccgggatggctctagcgggggtgtcatctatctggtcacc 29443787
Query: 847 attacagctgctggtgtggaccatcgagtaatcttgggcaatgagctgccaaaattctat 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29443788 attacagctgctggtgtggaccatcgagtaatcttgggcaatgagctgccaaaattctat 29443847
Query: 907 gacgagtgactcttcctcagacctccctgctgtattttgtaataaacgttctgggcccgg 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29443848 gacgagtgactcttcctcagacctccctgctgtattttgtaataaacgttctgggcccgg 29443907
Query: 967 aaaatggtatggtcagtgggtgctcggcgagatgaagcttgggaagggagcttcttccct 1026
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29443908 aacctggtatggtcagtgggtgctcggcgagatgaagcttgggaagggagcttcttccct 29443967
Query: 1027 cacagatggtagcttatcctttttattcttttgtgcccagcttgcaaacatctttcccag 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29443968 cacagatggtagcttatcctttttattcttttgtgcccagcttgcaaacatctttcccag 29444027
Query: 1087 aggaaagtgcatcgggaggatgctggaactaggaagaaccctatacgtgacaggccatca 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29444028 aggaaagtgcatcgggaggatgctggaactaggaagaaccctatacgtgacaggccatca 29444087
Query: 1147 tgtattgagtgattttgaaatatt-taaatgatataa 1182
||| |||||||||||||||||||| |||||||||||
Sbjct: 29444088 tgttttgagtgattttgaaatattaaaaatgatataa 29444124
Score = 617 bits (311), Expect = e-174
Identities = 311/311 (100%)
Strand = Plus / Plus
Query: 5 tttccttgcctcctcttgcgggatccaatggtctggactttttcaccccagccctttggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283634 tttccttgcctcctcttgcgggatccaatggtctggactttttcaccccagccctttggt 29283693
Query: 65 agggatcttacgtcatctgtctccgggcagacctgcaccacacaggttggcgcaggggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283694 agggatcttacgtcatctgtctccgggcagacctgcaccacacaggttggcgcaggggtg 29283753
Query: 125 cgaagccgcaaggagcggacccgggcgccccctggcgggcgtggtgaaggggcggggctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283754 cgaagccgcaaggagcggacccgggcgccccctggcgggcgtggtgaaggggcggggctg 29283813
Query: 185 taaggcagctcaccccgtgctgtcccaggtcggaaaccagtgcccaaggcagcgaggagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283814 taaggcagctcaccccgtgctgtcccaggtcggaaaccagtgcccaaggcagcgaggagc 29283873
Query: 245 gtggcaccgggatgctgcgggctggaggacctactggggacttaccccgggccggagaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283874 gtggcaccgggatgctgcgggctggaggacctactggggacttaccccgggccggagaag 29283933
Query: 305 tccacactggg 315
|||||||||||
Sbjct: 29283934 tccacactggg 29283944
Score = 617 bits (311), Expect = e-174
Identities = 311/311 (100%)
Strand = Plus / Plus
Query: 5 tttccttgcctcctcttgcgggatccaatggtctggactttttcaccccagccctttggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438755 tttccttgcctcctcttgcgggatccaatggtctggactttttcaccccagccctttggt 29438814
Query: 65 agggatcttacgtcatctgtctccgggcagacctgcaccacacaggttggcgcaggggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438815 agggatcttacgtcatctgtctccgggcagacctgcaccacacaggttggcgcaggggtg 29438874
Query: 125 cgaagccgcaaggagcggacccgggcgccccctggcgggcgtggtgaaggggcggggctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438875 cgaagccgcaaggagcggacccgggcgccccctggcgggcgtggtgaaggggcggggctg 29438934
Query: 185 taaggcagctcaccccgtgctgtcccaggtcggaaaccagtgcccaaggcagcgaggagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438935 taaggcagctcaccccgtgctgtcccaggtcggaaaccagtgcccaaggcagcgaggagc 29438994
Query: 245 gtggcaccgggatgctgcgggctggaggacctactggggacttaccccgggccggagaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438995 gtggcaccgggatgctgcgggctggaggacctactggggacttaccccgggccggagaag 29439054
Query: 305 tccacactggg 315
|||||||||||
Sbjct: 29439055 tccacactggg 29439065
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 642 ccaggtatatggaaccatgggaggaatgctgattcgacagccctttgccatcggtggctc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29287945 ccaggtatatggaaccatgggaggaatgctgattcgacagccctttgccatcggtggctc 29288004
Query: 702 tggcagcacctacatctacggttatgtggacgcggcatataagccaggcatgtcccctga 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288005 tggcagcacctacatctacggttatgtggacgcggcatataagccaggcatgtcccctga 29288064
Query: 762 ggagtgcaggcgcttcaccacaaatg 787
||||||||||||||||||||||||||
Sbjct: 29288065 ggagtgcaggcgcttcaccacaaatg 29288090
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 642 ccaggtatatggaaccatgggaggaatgctgattcgacagccctttgccatcggtggctc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29443066 ccaggtatatggaaccatgggaggaatgctgattcgacagccctttgccatcggtggctc 29443125
Query: 702 tggcagcacctacatctacggttatgtggacgcggcatataagccaggcatgtcccctga 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29443126 tggcagcacctacatctacggttatgtggacgcggcatataagccaggcatgtcccctga 29443185
Query: 762 ggagtgcaggcgcttcaccacaaatg 787
||||||||||||||||||||||||||
Sbjct: 29443186 ggagtgcaggcgcttcaccacaaatg 29443211
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 383 gagaggcggtggtaaaccgagtgtttgacaagctgtcccccctgcatcatcgaatctact 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29286780 gagaggcggtggtaaaccgagtgtttgacaagctgtcccccctgcatcatcgaatctact 29286839
Query: 443 gtgcgctctctggctcagccgctgatgctcaggccatagcggacatggccgcctaccagc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29286840 gtgcgctctctggctcagccgctgatgctcaggccatagcggacatggccgcctaccagc 29286899
Query: 503 tggagctccatgg 515
|||||||||||||
Sbjct: 29286900 tggagctccatgg 29286912
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 515 gaatggaactggaagaacctccacttgttctggctgctgcaaacgtggtgaggaacatca 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29287568 gaatggaactggaagaacctccacttgttctggctgctgcaaacgtggtgaggaacatca 29287627
Query: 575 gctataaatatcgggaggacctatctgcacatctcatggtagccggctgggaccaacgtg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29287628 gctataaatatcgggaggacctatctgcacatctcatggtagccggctgggaccaacgtg 29287687
Query: 635 aagggggccaggt 647
|||||||||||||
Sbjct: 29287688 aagggggccaggt 29287700
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 383 gagaggcggtggtaaaccgagtgtttgacaagctgtcccccctgcatcatcgaatctact 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29441901 gagaggcggtggtaaaccgagtgtttgacaagctgtcccccctgcatcatcgaatctact 29441960
Query: 443 gtgcgctctctggctcagccgctgatgctcaggccatagcggacatggccgcctaccagc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29441961 gtgcgctctctggctcagccgctgatgctcaggccatagcggacatggccgcctaccagc 29442020
Query: 503 tggagctccatgg 515
|||||||||||||
Sbjct: 29442021 tggagctccatgg 29442033
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 515 gaatggaactggaagaacctccacttgttctggctgctgcaaacgtggtgaggaacatca 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29442689 gaatggaactggaagaacctccacttgttctggctgctgcaaacgtggtgaggaacatca 29442748
Query: 575 gctataaatatcgggaggacctatctgcacatctcatggtagccggctgggaccaacgtg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29442749 gctataaatatcgggaggacctatctgcacatctcatggtagccggctgggaccaacgtg 29442808
Query: 635 aagggggccaggt 647
|||||||||||||
Sbjct: 29442809 aagggggccaggt 29442821
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 315 gacaaccatcatggcggtggagtttgatgggggcgtcgtggtgggatctgattcccgggt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285762 gacaaccatcatggcggtggagtttgatgggggcgtcgtggtgggatctgattcccgggt 29285821
Query: 375 gtctgcagg 383
|||||||||
Sbjct: 29285822 gtctgcagg 29285830
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 315 gacaaccatcatggcggtggagtttgatgggggcgtcgtggtgggatctgattcccgggt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29440883 gacaaccatcatggcggtggagtttgatgggggcgtcgtggtgggatctgattcccgggt 29440942
Query: 375 gtctgcagg 383
|||||||||
Sbjct: 29440943 gtctgcagg 29440951
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,001,583
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 12
Length of query: 1182
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1161
Effective length of database: 2,808,413,156
Effective search space: 3260567674116
Effective search space used: 3260567674116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)