Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013653
(962 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003226.1| survival motor neuron protein [Canis lupus f... 333 3e-93
Alignment gi|XP_535011.2| PREDICTED: similar to Survival of motor neuron-... 58 1e-08
Alignment gi|XP_864410.1| PREDICTED: similar to Survival of motor neuron-... 58 1e-08
>ref|NP_001003226.1| survival motor neuron protein [Canis lupus familiaris].
Length = 287
Score = 333 bits (854), Expect(2) = 3e-93
Identities = 173/276 (62%), Positives = 181/276 (65%)
Frame = +3
Query: 90 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXX 269
+PE EDSVLFRRG GQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASD
Sbjct: 7 LPEPEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDKPKSTPK 66
Query: 270 XXXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 449
N T +LKQWKVGD+CSA+WSEDGCIYPATIASIDFKRETC+VVYTGYG
Sbjct: 67 RKPAKKNKSQKKNATTALKQWKVGDKCSAVWSEDGCIYPATIASIDFKRETCVVVYTGYG 126
Query: 450 NREEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPW 629
NREEQN+SDLLSP EV PGNKPNNIKSKAAPW
Sbjct: 127 NREEQNVSDLLSPACEVANNVEQDTQENENESQISTDESENSSRSPGNKPNNIKSKAAPW 186
Query: 630 NSFLXXXXXXXXXXXXXRKPGLKFNGXXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXXX 809
NSFL KPG+KF+G FLSCWL
Sbjct: 187 NSFLPPPPPMSGSGLGPGKPGVKFSG-PPPPPPPPHFLSCWLPPFPSGPPIIPPPPPICP 245
Query: 810 DSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 917
DSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG
Sbjct: 246 DSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 281
Score = 28.1 bits (61), Expect(2) = 3e-93
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 890 GFQTKSKRGRCSHFN 934
GF+ K GRCSHFN
Sbjct: 273 GFKQNQKEGRCSHFN 287
>ref|XP_535011.2| PREDICTED: similar to Survival of motor neuron-related splicing
factor 30 (SMN-related protein) (30 kDa splicing factor
SMNrp) (Survival motor neuron domain containing protein
1) isoform 1 [Canis familiaris].
Length = 238
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/57 (47%), Positives = 33/57 (57%)
Frame = +3
Query: 309 TTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDL 479
+T WKVGD+C AIWSEDG Y A I ID + T + + GYGN E L +L
Sbjct: 66 STQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL 122
>ref|XP_864410.1| PREDICTED: similar to Survival of motor neuron-related splicing
factor 30 (SMN-related protein) (30 kDa splicing factor
SMNrp) (Survival motor neuron domain containing protein
1) isoform 2 [Canis familiaris].
Length = 199
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/57 (47%), Positives = 33/57 (57%)
Frame = +3
Query: 309 TTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDL 479
+T WKVGD+C AIWSEDG Y A I ID + T + + GYGN E L +L
Sbjct: 27 STQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL 83
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,568,120
Number of extensions: 627844
Number of successful extensions: 1445
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1442
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 217
Effective length of database: 15,440,896
Effective search space: 3350674432
Effective search space used: 3350674432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013653
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013653
(962 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_783632.1| survival motor neuron protein [Bos taurus]. 311 2e-85
Alignment gi|NP_001030414.1| survival of motor neuron-related-splicing fa... 58 1e-08
>ref|NP_783632.1| survival motor neuron protein [Bos taurus].
Length = 287
Score = 311 bits (796), Expect(2) = 2e-85
Identities = 167/275 (60%), Positives = 176/275 (64%)
Frame = +3
Query: 93 PEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXXX 272
PE EDSVLFRRG G+SDDSD+WDDTALIKAYDKAVASFKHALKNGDISEAS+
Sbjct: 9 PEPEDSVLFRRGTGESDDSDVWDDTALIKAYDKAVASFKHALKNGDISEASEKPKGTPKR 68
Query: 273 XXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGN 452
NTT+ KQWKVGD C AIWSEDGCIYPATIASIDFKRETC+VVYTGYGN
Sbjct: 69 KSAKNKSQRK-NTTSPSKQWKVGDNCCAIWSEDGCIYPATIASIDFKRETCVVVYTGYGN 127
Query: 453 REEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPWN 632
REEQNLSDLLSPTSEV P NKPNNI+S+AAPWN
Sbjct: 128 REEQNLSDLLSPTSEV-ANIEQNAQENENESQISTDESENSSRSPLNKPNNIRSRAAPWN 186
Query: 633 SFLXXXXXXXXXXXXXRKPGLKFNGXXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXXXD 812
SFL K GL F+G FLS WL D
Sbjct: 187 SFLPPPPHMPRSGLGPGKSGLNFSGPPPPPPPPPHFLSRWLPPFPAGPPMIPPPPPICPD 246
Query: 813 SLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 917
SLDDADALGSMLISWYMSGYHTGYYMGFKQ+QKEG
Sbjct: 247 SLDDADALGSMLISWYMSGYHTGYYMGFKQSQKEG 281
Score = 23.9 bits (50), Expect(2) = 2e-85
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 890 GFQTKSKRGRCSHFN 934
GF+ K GR SHFN
Sbjct: 273 GFKQSQKEGRYSHFN 287
>ref|NP_001030414.1| survival of motor neuron-related-splicing factor 30 [Bos taurus].
Length = 238
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/57 (47%), Positives = 33/57 (57%)
Frame = +3
Query: 309 TTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDL 479
+T WKVGD+C AIWSEDG Y A I ID + T + + GYGN E L +L
Sbjct: 66 STQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL 122
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,369,532
Number of extensions: 629289
Number of successful extensions: 1309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1307
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 218
Effective length of database: 14,306,398
Effective search space: 3118794764
Effective search space used: 3118794764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013653
(962 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124207.1| survival motor neuron protein [Sus scrofa]. 356 e-100
Alignment gi|NP_001159781.1| survival of motor neuron-related-splicing fa... 58 7e-09
>ref|NP_001124207.1| survival motor neuron protein [Sus scrofa].
Length = 293
Score = 356 bits (914), Expect(2) = e-100
Identities = 186/276 (67%), Positives = 188/276 (68%)
Frame = +3
Query: 90 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXX 269
VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASD
Sbjct: 12 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDKPKATPK 71
Query: 270 XXXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 449
NTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG
Sbjct: 72 RKPPKKNKSQKKNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 131
Query: 450 NREEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPW 629
+REEQNLSDLLSPTSEV PGNKPNNIKSKAAPW
Sbjct: 132 DREEQNLSDLLSPTSEVANNIEENAQENENESQISTDESESSSRSPGNKPNNIKSKAAPW 191
Query: 630 NSFLXXXXXXXXXXXXXRKPGLKFNGXXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXXX 809
NSFL RKPGLKFNG FLSCWL
Sbjct: 192 NSFLPPPPPMPGAGLGPRKPGLKFNGPPPPPPPPPHFLSCWLPPFPSGPPIIPPPPPICP 251
Query: 810 DSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 917
DSLDDADALGSMLISWYMSGYHTGYYMGF+QNQKEG
Sbjct: 252 DSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEG 287
Score = 28.1 bits (61), Expect(2) = e-100
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 890 GFQTKSKRGRCSHFN 934
GF+ K GRCSHFN
Sbjct: 279 GFRQNQKEGRCSHFN 293
>ref|NP_001159781.1| survival of motor neuron-related-splicing factor 30 [Sus scrofa].
Length = 238
Score = 58.2 bits (139), Expect = 7e-09
Identities = 27/57 (47%), Positives = 33/57 (57%)
Frame = +3
Query: 309 TTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDL 479
+T WKVGD+C AIWSEDG Y A I ID + T + + GYGN E L +L
Sbjct: 66 STQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL 122
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,052,369
Number of extensions: 429950
Number of successful extensions: 839
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 3
Length of query: 320
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,879,129
Effective search space: 1962287509
Effective search space used: 1962287509
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013653
(962 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035550.1| survival motor neuron protein [Mus musculus]. 291 2e-79
Alignment gi|NP_766017.1| survival of motor neuron-related-splicing facto... 54 1e-07
>ref|NP_035550.1| survival motor neuron protein [Mus musculus].
Length = 288
Score = 291 bits (745), Expect(2) = 2e-79
Identities = 156/275 (56%), Positives = 164/275 (59%), Gaps = 1/275 (0%)
Frame = +3
Query: 96 EAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXXXX 275
E ED+VLFRRG GQSDDSDIWDDTALIKAYDKAVASFKHALKNGDI E D
Sbjct: 11 EQEDTVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETPDKPKGTARRK 70
Query: 276 XXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNR 455
N T LKQWKVGD+CSA+WSEDGCIYPATI SIDFKRETC+VVYTGYGNR
Sbjct: 71 PAKKNKSQKKNATTPLKQWKVGDKCSAVWSEDGCIYPATITSIDFKRETCVVVYTGYGNR 130
Query: 456 EEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPWNS 635
EEQNLSDLLSPT EV + KSKAAPW S
Sbjct: 131 EEQNLSDLLSPTCEVANSTEQNTQENESQVSTDDSEHSSRSL---RSKAHSKSKAAPWTS 187
Query: 636 FLXXXXXXXXXXXXXRKPGLKFNG-XXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXXXD 812
FL KPGLKFNG FL CW+ D
Sbjct: 188 FLPPPPPMPGSGLGPGKPGLKFNGPPPPPPLPPPPFLPCWMPPFPSGPPIIPPPPPISPD 247
Query: 813 SLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 917
LDD DALGSMLISWYMSGYHTGYYMGF+QN+KEG
Sbjct: 248 CLDDTDALGSMLISWYMSGYHTGYYMGFRQNKKEG 282
Score = 23.9 bits (50), Expect(2) = 2e-79
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 890 GFQTKSKRGRCSHFN 934
GF+ K G+CSH N
Sbjct: 274 GFRQNKKEGKCSHTN 288
>ref|NP_766017.1| survival of motor neuron-related-splicing factor 30 [Mus musculus].
Length = 238
Score = 54.3 bits (129), Expect = 1e-07
Identities = 25/57 (43%), Positives = 32/57 (56%)
Frame = +3
Query: 309 TTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDL 479
+T WKVGD+C A+WSEDG Y A I ID + T + + YGN E L +L
Sbjct: 66 STQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNL 122
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,733,470
Number of extensions: 534168
Number of successful extensions: 1073
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 219
Effective length of database: 12,583,923
Effective search space: 2755879137
Effective search space used: 2755879137
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013653
(962 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000335.1| survival motor neuron protein isoform d [Homo s... 317 4e-87
Alignment gi|NP_059107.1| survival motor neuron protein isoform d [Homo s... 317 4e-87
Alignment gi|NP_075013.1| survival motor neuron protein isoform a [Homo s... 300 2e-81
Alignment gi|NP_075012.1| survival motor neuron protein isoform b [Homo s... 286 1e-77
Alignment gi|NP_075014.1| survival motor neuron protein isoform b [Homo s... 286 1e-77
Alignment gi|NP_075015.1| survival motor neuron protein isoform c [Homo s... 268 5e-72
Alignment gi|NP_005862.1| survival of motor neuron-related-splicing facto... 58 1e-08
>ref|NP_000335.1| survival motor neuron protein isoform d [Homo sapiens].
Length = 294
Score = 317 bits (813), Expect(2) = 4e-87
Identities = 170/277 (61%), Positives = 176/277 (63%), Gaps = 1/277 (0%)
Frame = +3
Query: 90 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXX 269
VPE EDSVLFRRG GQSDDSDIWDDTALIKAYDKAVASFKHALKNGDI E S
Sbjct: 12 VPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPK 71
Query: 270 XXXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 449
NT ASL+QWKVGD+CSAIWSEDGCIYPATIASIDFKRETC+VVYTGYG
Sbjct: 72 RKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYG 131
Query: 450 NREEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPW 629
NREEQNLSDLLSP EV PGNK +NIK K+APW
Sbjct: 132 NREEQNLSDLLSPICEV-ANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPW 190
Query: 630 NSFLXXXXXXXXXXXXXRKPGLKFNG-XXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXX 806
NSFL KPGLKFNG LSCWL
Sbjct: 191 NSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPIC 250
Query: 807 XDSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 917
DSLDDADALGSMLISWYMSGYHTGYYMGF+QNQKEG
Sbjct: 251 PDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEG 287
Score = 23.5 bits (49), Expect(2) = 4e-87
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 890 GFQTKSKRGRCSH 928
GF+ K GRCSH
Sbjct: 279 GFRQNQKEGRCSH 291
>ref|NP_059107.1| survival motor neuron protein isoform d [Homo sapiens].
Length = 294
Score = 317 bits (813), Expect(2) = 4e-87
Identities = 170/277 (61%), Positives = 176/277 (63%), Gaps = 1/277 (0%)
Frame = +3
Query: 90 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXX 269
VPE EDSVLFRRG GQSDDSDIWDDTALIKAYDKAVASFKHALKNGDI E S
Sbjct: 12 VPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPK 71
Query: 270 XXXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 449
NT ASL+QWKVGD+CSAIWSEDGCIYPATIASIDFKRETC+VVYTGYG
Sbjct: 72 RKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYG 131
Query: 450 NREEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPW 629
NREEQNLSDLLSP EV PGNK +NIK K+APW
Sbjct: 132 NREEQNLSDLLSPICEV-ANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPW 190
Query: 630 NSFLXXXXXXXXXXXXXRKPGLKFNG-XXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXX 806
NSFL KPGLKFNG LSCWL
Sbjct: 191 NSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPIC 250
Query: 807 XDSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 917
DSLDDADALGSMLISWYMSGYHTGYYMGF+QNQKEG
Sbjct: 251 PDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEG 287
Score = 23.5 bits (49), Expect(2) = 4e-87
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 890 GFQTKSKRGRCSH 928
GF+ K GRCSH
Sbjct: 279 GFRQNQKEGRCSH 291
>ref|NP_075013.1| survival motor neuron protein isoform a [Homo sapiens].
Length = 282
Score = 300 bits (767), Expect = 2e-81
Identities = 162/268 (60%), Positives = 167/268 (62%), Gaps = 1/268 (0%)
Frame = +3
Query: 90 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXX 269
VPE EDSVLFRRG GQSDDSDIWDDTALIKAYDKAVASFKHALKNGDI E S
Sbjct: 12 VPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPK 71
Query: 270 XXXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 449
NT ASL+QWKVGD+CSAIWSEDGCIYPATIASIDFKRETC+VVYTGYG
Sbjct: 72 RKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYG 131
Query: 450 NREEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPW 629
NREEQNLSDLLSP EV PGNK +NIK K+APW
Sbjct: 132 NREEQNLSDLLSPICEV-ANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPW 190
Query: 630 NSFLXXXXXXXXXXXXXRKPGLKFNG-XXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXX 806
NSFL KPGLKFNG LSCWL
Sbjct: 191 NSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPIC 250
Query: 807 XDSLDDADALGSMLISWYMSGYHTGYYM 890
DSLDDADALGSMLISWYMSGYHTGYYM
Sbjct: 251 PDSLDDADALGSMLISWYMSGYHTGYYM 278
>ref|NP_075012.1| survival motor neuron protein isoform b [Homo sapiens].
Length = 262
Score = 286 bits (731), Expect(2) = 1e-77
Identities = 159/276 (57%), Positives = 166/276 (60%)
Frame = +3
Query: 90 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXX 269
VPE EDSVLFRRG GQSDDSDIWDDTALIKAYDKAVASFKHALKNGDI E S
Sbjct: 12 VPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPK 71
Query: 270 XXXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 449
NT ASL+QWKVGD+CSAIWSEDGCIYPATIASIDFKRETC+VVYTGYG
Sbjct: 72 RKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYG 131
Query: 450 NREEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPW 629
NREEQNLSDLLSP EV PGNK +NIK K+APW
Sbjct: 132 NREEQNLSDLLSPICEV-ANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPW 190
Query: 630 NSFLXXXXXXXXXXXXXRKPGLKFNGXXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXXX 809
NSFL PG +
Sbjct: 191 NSFLPPPPP---------MPGPRLG----------------------PGKIIPPPPPICP 219
Query: 810 DSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 917
DSLDDADALGSMLISWYMSGYHTGYYMGF+QNQKEG
Sbjct: 220 DSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEG 255
Score = 23.5 bits (49), Expect(2) = 1e-77
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 890 GFQTKSKRGRCSH 928
GF+ K GRCSH
Sbjct: 247 GFRQNQKEGRCSH 259
>ref|NP_075014.1| survival motor neuron protein isoform b [Homo sapiens].
Length = 262
Score = 286 bits (731), Expect(2) = 1e-77
Identities = 159/276 (57%), Positives = 166/276 (60%)
Frame = +3
Query: 90 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXX 269
VPE EDSVLFRRG GQSDDSDIWDDTALIKAYDKAVASFKHALKNGDI E S
Sbjct: 12 VPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPK 71
Query: 270 XXXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 449
NT ASL+QWKVGD+CSAIWSEDGCIYPATIASIDFKRETC+VVYTGYG
Sbjct: 72 RKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYG 131
Query: 450 NREEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPW 629
NREEQNLSDLLSP EV PGNK +NIK K+APW
Sbjct: 132 NREEQNLSDLLSPICEV-ANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPW 190
Query: 630 NSFLXXXXXXXXXXXXXRKPGLKFNGXXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXXX 809
NSFL PG +
Sbjct: 191 NSFLPPPPP---------MPGPRLG----------------------PGKIIPPPPPICP 219
Query: 810 DSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEG 917
DSLDDADALGSMLISWYMSGYHTGYYMGF+QNQKEG
Sbjct: 220 DSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEG 255
Score = 23.5 bits (49), Expect(2) = 1e-77
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 890 GFQTKSKRGRCSH 928
GF+ K GRCSH
Sbjct: 247 GFRQNQKEGRCSH 259
>ref|NP_075015.1| survival motor neuron protein isoform c [Homo sapiens].
Length = 250
Score = 268 bits (685), Expect = 5e-72
Identities = 151/267 (56%), Positives = 157/267 (58%)
Frame = +3
Query: 90 VPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDXXXXXXX 269
VPE EDSVLFRRG GQSDDSDIWDDTALIKAYDKAVASFKHALKNGDI E S
Sbjct: 12 VPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPK 71
Query: 270 XXXXXXXXXXXXNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYG 449
NT ASL+QWKVGD+CSAIWSEDGCIYPATIASIDFKRETC+VVYTGYG
Sbjct: 72 RKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYG 131
Query: 450 NREEQNLSDLLSPTSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNKPNNIKSKAAPW 629
NREEQNLSDLLSP EV PGNK +NIK K+APW
Sbjct: 132 NREEQNLSDLLSPICEV-ANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPW 190
Query: 630 NSFLXXXXXXXXXXXXXRKPGLKFNGXXXXXXXXXXFLSCWLXXXXXXXXXXXXXXXXXX 809
NSFL PG +
Sbjct: 191 NSFLPPPPP---------MPGPRLG----------------------PGKIIPPPPPICP 219
Query: 810 DSLDDADALGSMLISWYMSGYHTGYYM 890
DSLDDADALGSMLISWYMSGYHTGYYM
Sbjct: 220 DSLDDADALGSMLISWYMSGYHTGYYM 246
>ref|NP_005862.1| survival of motor neuron-related-splicing factor 30 [Homo sapiens].
Length = 238
Score = 57.8 bits (138), Expect = 1e-08
Identities = 26/57 (45%), Positives = 33/57 (57%)
Frame = +3
Query: 309 TTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDL 479
+T WKVGD+C A+WSEDG Y A I ID + T + + GYGN E L +L
Sbjct: 66 STQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL 122
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,144,860
Number of extensions: 621057
Number of successful extensions: 1406
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1391
Number of HSP's successfully gapped: 14
Length of query: 320
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 217
Effective length of database: 14,901,872
Effective search space: 3233706224
Effective search space used: 3233706224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013653
(962 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 932 0.0
Sscrofa_Chr02 660 0.0
Sscrofa_Chr16 402 e-109
Sscrofa_ChrX 137 1e-29
>Sscrofa_Chr13
|| Length = 218635234
Score = 932 bits (470), Expect = 0.0
Identities = 593/635 (93%), Gaps = 6/635 (0%)
Strand = Plus / Minus
Query: 70 gcggtggcggcggcagcggtgttcctgaggcggaggactcggtgctgttccggcgcggtg 129
|||||| ||| ||||||||| |||||||||| |||||||||||| ||||||| | ||
Sbjct: 182834007 gcggtgacggtggcagcggtattcctgaggcagaggactcggtggggttccggaggggca 182833948
Query: 130 caggccagagtgatgattcggacatttgggatgatacagcgttgataaaagcttatgata 189
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 182833947 caggccagagtgatgatttggacatttgggatgatacagcattgataaaagcttatgata 182833888
Query: 190 aagctgtggcttcatttaagcatgctctaaagaatggtgacatttccgaagcttcagata 249
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 182833887 aagctgtggcttcatttaagcacgctctaaagaatggcgacatttccgaagcttcagata 182833828
Query: 250 aaccaaaagccacacctaaaagaaaacctcctaagaagaataaaagccnnnnnnngaata 309
||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct: 182833827 aaccaaaagccacacctaaaagaaaacctcctaagaagaataaaaaccaaaaaaagaaca 182833768
Query: 310 ccacagcctccttgaagcagtggaaggttggtgacagatgttctgccatttggtcggaag 369
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182833767 acacagcttccttgaagcagtggaaggttggtgacagatgttctgccatttggtcggaag 182833708
Query: 370 atggctgcatttacccagctaccattgcttcgattgattttaagagagaaacctgtattg 429
||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 182833707 atggctgcatttacccagctaccattgattcta-----tttaagagagaaacctgtattg 182833653
Query: 430 tggtttacactggatatggaaatagagaagagcaaaatctgtctgatttactttccccca 489
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 182833652 tggtttacactggatatggacatagagaagagcaaaatctgtatgatttactttccccca 182833593
Query: 490 cctctgaagtagctaataatatagaagagaatgctcaggagaatgaaaatgaaagtcaaa 549
| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 182833592 cttctgaagtagctaataatacagaagagaatgctcaggagaacgaaaatgaaagtcaaa 182833533
Query: 550 tttccacagatgaaagtgagagctcctcca-gatctcctggaaataagccaaataacatc 608
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 182833532 tttccacagatgaaagtgagagctcctccagggtctcctggaaataagccaaataacatc 182833473
Query: 609 aagtcaaaagctgctccatggaactcttttctccctccaccaccccctatgccaggagca 668
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 182833472 aagtcaaaagcttctccatggaacacttttctccctccaccaccccctatgccaggagca 182833413
Query: 669 ggtcttggaccaagaaagccaggtctaaaattcaa 703
||||||||||||||||||||| |||||||||||||
Sbjct: 182833412 ggtcttggaccaagaaagccaagtctaaaattcaa 182833378
Score = 297 bits (150), Expect = 6e-78
Identities = 198/214 (92%), Gaps = 2/214 (0%)
Strand = Plus / Minus
Query: 736 acttcctgtcatgctggctgcctccgtttccttctggaccaccaataattnnnnnnnnac 795
||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 182833334 acttcctgtcatgctggctgcctccatttccttctggaccaccaataattcccccaccac 182833275
Query: 796 ctcctatatgtccagattctctggatgatgctgatgctttgggaagtatgttaatctctt 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182833274 ctcctatatgtccagattctctggatgatgctgatgctttgggaagtatgttaatctctt 182833215
Query: 856 ggtacatgagtggctatcatactggttactatatgggtttcaaacaaaatcaaaaag-ag 914
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 182833214 ggtacatgagtggctatcatactggttactctatgggtttcacacaaaatcgaaaagaag 182833155
Query: 915 ggagatgctcacatttcaattaa-gagtaaatca 947
| || |||||||||||||||||| ||||||||||
Sbjct: 182833154 gaaggtgctcacatttcaattaaggagtaaatca 182833121
>Sscrofa_Chr02
|| Length = 162569375
Score = 660 bits (333), Expect = 0.0
Identities = 450/490 (91%), Gaps = 1/490 (0%)
Strand = Plus / Plus
Query: 214 ctctaaagaatggtgacatttccgaagcttcagataaaccaaaagccacacctaaaagaa 273
||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 159523247 ctctaaagaatagtgacatttctgaagcttcagataaaccaaaaggcacacctaaaagat 159523306
Query: 274 aacctcctaagaagaataaaagccnnnnnnngaataccacagcctccttgaagcagtgga 333
||||| |||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct: 159523307 aacctgctaagaagaataaaagccaaaaaaataataccatagctcccttgaagcagtgga 159523366
Query: 334 aggttggtgacagatgttctgccatttggtcggaagatggctgcatttacccagctacca 393
||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 159523367 aggttggtgacagatattctgctgtttggttggaagatggctgcatttacccagctacca 159523426
Query: 394 ttgcttcgattgattttaagagagaaacctgtattgtggtttacactggatatggaaata 453
|||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct: 159523427 ttgctttgattgattttaagagagaaacctgtattgtgttttacaatgtatatggaaata 159523486
Query: 454 gagaagagcaaaatctgtctgatttactttcccccacctctgaagtagctaataatatag 513
||||| ||||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct: 159523487 gagaaaagcaaaatctgtctgatttactttcccgg-ccttggatgtagctaacaatatag 159523545
Query: 514 aagagaatgctcaggagaatgaaaatgaaagtcaaatttccacagatgaaagtgagagct 573
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159523546 aagagaatgctctggagaatgaaaatgaaagtcaaatttccacagatgaaagtgagagct 159523605
Query: 574 cctccagatctcctggaaataagccaaataacatcaagtcaaaagctgctccatggaact 633
| |||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||
Sbjct: 159523606 catccagatctcctggaagtaagtcaagtaacataaagtcaaaagctgctccatggaact 159523665
Query: 634 cttttctccctccaccaccccctatgccaggagcaggtcttggaccaagaaagccaggtc 693
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 159523666 cttttctccttccaccactccctatgccaggagcaggtcttggaccaagaaagccaggtc 159523725
Query: 694 taaaattcaa 703
||||||||||
Sbjct: 159523726 taaaattcaa 159523735
Score = 260 bits (131), Expect = 1e-66
Identities = 195/215 (90%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 736 acttcctgtcatgctggctgcctccgtttccttctggaccaccaataattnnnnnnnn-a 794
||||||||| ||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 159523774 acttcctgttatgctggctgcctccatttccttctggaccaccaataattcccccacaca 159523833
Query: 795 cctcctatatgtccagattctctggatgatgctgatgctttgggaagtatgttaatctct 854
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 159523834 cctcctatatgaccagattctctggatgatgctgatgctttgagaagtatgttaatctct 159523893
Query: 855 tggtacatgagtggctatcatactggttactatatgggtttcaaacaaaatcaaaaag-a 913
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 159523894 cagtacatgaatggctatcatactggttactatatgggtttcaaacaaaatcaaaaagaa 159523953
Query: 914 gggagatgctcacatttcaattaa-gagtaaatca 947
|| || |||||||||||||||||| ||||||||||
Sbjct: 159523954 ggaaggtgctcacatttcaattaaggagtaaatca 159523988
>Sscrofa_Chr16
|| Length = 86898991
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 328 agtggaaggttggtgacagatgttctgccatttggtcggaagatggctgcatttacccag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51708058 agtggaaggttggtgacagatgttctgccatttggtcggaagatggctgcatttacccag 51707999
Query: 388 ctaccattgcttcgattgattttaagagagaaacctgtattgtggtttacactggatatg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51707998 ctaccattgcttcgattgattttaagagagaaacctgtattgtggtttacactggatatg 51707939
Query: 448 gaaatagagaagagcaaaatctgtctgatttactttcccccacctctgaagtagctaata 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51707938 gaaatagagaagagcaaaatctgtctgatttactttcccccacctctgaagtagctaata 51707879
Query: 508 atatagaagagaatgctcaggag 530
|||||||||||||||||||||||
Sbjct: 51707878 atatagaagagaatgctcaggag 51707856
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 529 agaatgaaaatgaaagtcaaatttccacagatgaaagtgagagctcctccagatctcctg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51707714 agaatgaaaatgaaagtcaaatttccacagatgaaagtgagagctcctccagatctcctg 51707655
Query: 589 gaaataagccaaataacatcaagtcaaaagctgctccatggaactcttttctccctccac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51707654 gaaataagccaaataacatcaagtcaaaagctgctccatggaactcttttctccctccac 51707595
Query: 649 caccccctatgccaggagcaggtcttggaccaagaaag 686
||||||||||||||||||||||||||||||||||||||
Sbjct: 51707594 caccccctatgccaggagcaggtcttggaccaagaaag 51707557
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 8 actcgcggagggactgagcccacgccgcgcacccagcagtaggcgcgccatggcgatggg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51724249 actcgcggagggactgagcccacgccgcgcacccagcagtaggcgcgccatggcgatggg 51724190
Query: 68 cggcggtggcggcggcagcggtgttcctgaggcggaggactcggtgctgttccggcgcgg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51724189 cggcggtggcggcggcagcggtgttcctgaggcggaggactcggtgctgttccggcgcgg 51724130
Query: 128 tgcaggccag 137
||||||||||
Sbjct: 51724129 tgcaggccag 51724120
Score = 200 bits (101), Expect = 1e-48
Identities = 115/122 (94%)
Strand = Plus / Minus
Query: 208 agcatgctctaaagaatggtgacatttccgaagcttcagataaaccaaaagccacaccta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51710655 agcatgctctaaagaatggtgacatttccgaagcttcagataaaccaaaagccacaccta 51710596
Query: 268 aaagaaaacctcctaagaagaataaaagccnnnnnnngaataccacagcctccttgaagc 327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 51710595 aaagaaaacctcctaagaagaataaaagccaaaaaaagaataccacagcctccttgaagc 51710536
Query: 328 ag 329
||
Sbjct: 51710535 ag 51710534
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 794 acctcctatatgtccagattctctggatgatgctgatgctttgggaagtatgttaatctc 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51704440 acctcctatatgtccagattctctggatgatgctgatgctttgggaagtatgttaatctc 51704381
Query: 854 ttggtacatgagtggctatcatactggttactatatgg 891
||||||||||||||||||||||||||||||||||||||
Sbjct: 51704380 ttggtacatgagtggctatcatactggttactatatgg 51704343
Score = 151 bits (76), Expect = 8e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 134 ccagagtgatgattcggacatttgggatgatacagcgttgataaaagcttatgataaagc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51713622 ccagagtgatgattcggacatttgggatgatacagcgttgataaaagcttatgataaagc 51713563
Query: 194 tgtggcttcatttaag 209
||||||||||||||||
Sbjct: 51713562 tgtggcttcatttaag 51713547
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 736 acttcctgtcatgctggctgcctccgtttccttctggaccacca 779
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51705852 acttcctgtcatgctggctgcctccgtttccttctggaccacca 51705809
Score = 75.8 bits (38), Expect = 4e-11
Identities = 48/50 (96%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 890 gggtttcaaacaaaatcaaaaag-agggagatgctcacatttcaattaag 938
||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 51698494 gggtttcaaacaaaatcaaaaagaaggaagatgctcacatttcaattaag 51698445
>Sscrofa_ChrX
|| Length = 144288218
Score = 137 bits (69), Expect = 1e-29
Identities = 185/226 (81%)
Strand = Plus / Plus
Query: 135 cagagtgatgattcggacatttgggatgatacagcgttgataaaagcttatgataaagct 194
||||||| |||||| |||| | |||||||||||| |||||||| ||| ||||||| |
Sbjct: 84299037 cagagtggtgattccaacatattggatgatacagcagtgataaaatcttgtgataaaaca 84299096
Query: 195 gtggcttcatttaagcatgctctaaagaatggtgacatttccgaagcttcagataaacca 254
|||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 84299097 ctggcttcatttaagcacactctaaaaaatggtgacatttctgaagcttcagataaacca 84299156
Query: 255 aaagccacacctaaaagaaaacctcctaagaagaataaaagccnnnnnnngaataccaca 314
|||| |||| ||||||||||| | ||| |||||||||||| ||||| ||||
Sbjct: 84299157 aaaggtgtacctgaaagaaaacctgccaaggagaataaaagccaaaataagaatagcaca 84299216
Query: 315 gcctccttgaagcagtggaaggttggtgacagatgttctgccattt 360
| ||||| ||||||||| |||| ||||| || |||||||||||
Sbjct: 84299217 actctcttgaggcagtggaaagttgatgacaaatattctgccattt 84299262
Score = 137 bits (69), Expect = 1e-29
Identities = 129/148 (87%), Gaps = 2/148 (1%)
Strand = Plus / Plus
Query: 472 ctgatttactttcccccacctctgaagtagctaataatatagaagagaatgctcaggaga 531
|||||| ||||||||| ||||||||||||| ||||||||||||| | |||| || ||||
Sbjct: 84299512 ctgattcactttccccaacctctgaagtagttaataatatagaaca--atgcacaagaga 84299569
Query: 532 atgaaaatgaaagtcaaatttccacagatgaaagtgagagctcctccagatctcctggaa 591
||||||||||||||||||||| |||| ||| | ||||| |||||||| ||| ||||||
Sbjct: 84299570 atgaaaatgaaagtcaaattttcacatatgtagatgagaactcctccaagtctgctggaa 84299629
Query: 592 ataagccaaataacatcaagtcaaaagc 619
|||| |||||||| ||||||||||||||
Sbjct: 84299630 ataaaccaaataatatcaagtcaaaagc 84299657
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,614,894
Number of extensions: 576
Number of successful extensions: 576
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 19
Length of query: 962
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 941
Effective length of database: 2,808,413,156
Effective search space: 2642716779796
Effective search space used: 2642716779796
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)