Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013654
(1004 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695724.1| PREDICTED: Bleomycin hydrolase-like [Bos tau... 534 e-152
Alignment gi|XP_580618.4| PREDICTED: Bleomycin hydrolase-like [Bos taurus]. 534 e-152
>ref|XP_002695724.1| PREDICTED: Bleomycin hydrolase-like [Bos taurus].
Length = 459
Score = 534 bits (1375), Expect = e-152
Identities = 255/273 (93%), Positives = 263/273 (96%)
Frame = +1
Query: 184 GAMNEAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHTVH 363
GA AGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQH VH
Sbjct: 3 GAGIPAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHAVH 62
Query: 364 QEGKPVTNQKSSGRCWIFSCLNVMRLPFMRKLNIEEFEFSQSYLFFWDKVERCYFFLNAF 543
QEGKPVTNQKSSGRCWIFSCLNVMRLPFMR+ NIEEFEFSQSYLFFWDKVERCYFFLNAF
Sbjct: 63 QEGKPVTNQKSSGRCWIFSCLNVMRLPFMRRFNIEEFEFSQSYLFFWDKVERCYFFLNAF 122
Query: 544 VDTAQKKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMN 723
VDTAQKKEPEDGRLVQ+LLMNPANDGGQWDMLVNIVEKYGV+PKKCFPE++TTEATRRMN
Sbjct: 123 VDTAQKKEPEDGRLVQYLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPETYTTEATRRMN 182
Query: 724 DILNHKMREFCIRLRNLVHSGATKVEISATQDIMMEEIFRVVCICLGNPPETFTWEYRDK 903
DILNHKMREFCIRLRNLVHSGATK EISATQD MMEEIFRVVCICLGNPPETFTWEYRDK
Sbjct: 183 DILNHKMREFCIRLRNLVHSGATKEEISATQDSMMEEIFRVVCICLGNPPETFTWEYRDK 242
Query: 904 DKNYQKIGPITPLKFYRDHVQPLFNMEE*NCIV 1002
DKNYQKIGPITPLKFYR HV+PLFNME+ C+V
Sbjct: 243 DKNYQKIGPITPLKFYRQHVKPLFNMEDKICLV 275
>ref|XP_580618.4| PREDICTED: Bleomycin hydrolase-like [Bos taurus].
Length = 459
Score = 534 bits (1375), Expect = e-152
Identities = 255/273 (93%), Positives = 263/273 (96%)
Frame = +1
Query: 184 GAMNEAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHTVH 363
GA AGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQH VH
Sbjct: 3 GAGIPAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHAVH 62
Query: 364 QEGKPVTNQKSSGRCWIFSCLNVMRLPFMRKLNIEEFEFSQSYLFFWDKVERCYFFLNAF 543
QEGKPVTNQKSSGRCWIFSCLNVMRLPFMR+ NIEEFEFSQSYLFFWDKVERCYFFLNAF
Sbjct: 63 QEGKPVTNQKSSGRCWIFSCLNVMRLPFMRRFNIEEFEFSQSYLFFWDKVERCYFFLNAF 122
Query: 544 VDTAQKKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMN 723
VDTAQKKEPEDGRLVQ+LLMNPANDGGQWDMLVNIVEKYGV+PKKCFPE++TTEATRRMN
Sbjct: 123 VDTAQKKEPEDGRLVQYLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPETYTTEATRRMN 182
Query: 724 DILNHKMREFCIRLRNLVHSGATKVEISATQDIMMEEIFRVVCICLGNPPETFTWEYRDK 903
DILNHKMREFCIRLRNLVHSGATK EISATQD MMEEIFRVVCICLGNPPETFTWEYRDK
Sbjct: 183 DILNHKMREFCIRLRNLVHSGATKEEISATQDSMMEEIFRVVCICLGNPPETFTWEYRDK 242
Query: 904 DKNYQKIGPITPLKFYRDHVQPLFNMEE*NCIV 1002
DKNYQKIGPITPLKFYR HV+PLFNME+ C+V
Sbjct: 243 DKNYQKIGPITPLKFYRQHVKPLFNMEDKICLV 275
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,233,618
Number of extensions: 1197326
Number of successful extensions: 4922
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4907
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013654
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013654
(1004 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537755.2| PREDICTED: similar to Bleomycin hydrolase (BLM ... 553 e-157
>ref|XP_537755.2| PREDICTED: similar to Bleomycin hydrolase (BLM hydrolase) (BMH) (BH)
[Canis familiaris].
Length = 654
Score = 553 bits (1424), Expect = e-157
Identities = 262/286 (91%), Positives = 275/286 (96%)
Frame = +1
Query: 145 EDPETTVPRPGSVGAMNEAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRAT 324
E+PETTVP+PG+V MN AGLN EKVAAL+QKLNSDPQFVLAQNVGTTHDLLDICLKRAT
Sbjct: 185 ENPETTVPQPGAVATMNNAGLNPEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRAT 244
Query: 325 VQGTQHVFQHTVHQEGKPVTNQKSSGRCWIFSCLNVMRLPFMRKLNIEEFEFSQSYLFFW 504
VQG QHVFQH V QEGKPVTNQKSSGRCWIFSCLNVMRLPFM+KLNIEEFEFSQSYLFFW
Sbjct: 245 VQGAQHVFQHAVTQEGKPVTNQKSSGRCWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFW 304
Query: 505 DKVERCYFFLNAFVDTAQKKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVVPKKCF 684
DKVERCYFFLNAFVDTAQKKEPEDGRLVQ+LLMNPANDGGQWDMLVNIVEKYGVVPKKCF
Sbjct: 305 DKVERCYFFLNAFVDTAQKKEPEDGRLVQYLLMNPANDGGQWDMLVNIVEKYGVVPKKCF 364
Query: 685 PESHTTEATRRMNDILNHKMREFCIRLRNLVHSGATKVEISATQDIMMEEIFRVVCICLG 864
PES+TTEATRRMNDILNHKMREFCIRLRNLVHSGATK EISATQD+MMEEIFRVVCICLG
Sbjct: 365 PESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLG 424
Query: 865 NPPETFTWEYRDKDKNYQKIGPITPLKFYRDHVQPLFNMEE*NCIV 1002
NPPETFTWEYRDKDKNYQ+IGPITPL+FYR+HV+PLFNME C+V
Sbjct: 425 NPPETFTWEYRDKDKNYQRIGPITPLEFYREHVKPLFNMENKICLV 470
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,070,983
Number of extensions: 1239296
Number of successful extensions: 5018
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4998
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013654
(1004 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131849.2| PREDICTED: bleomycin hydrolase-like [Sus scr... 384 e-107
Alignment gi|XP_003131850.2| PREDICTED: bleomycin hydrolase-like [Sus scr... 119 3e-27
>ref|XP_003131849.2| PREDICTED: bleomycin hydrolase-like [Sus scrofa].
Length = 289
Score = 384 bits (987), Expect = e-107
Identities = 184/186 (98%), Positives = 186/186 (100%)
Frame = +1
Query: 190 MNEAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHTVHQE 369
MNEAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHTVHQE
Sbjct: 1 MNEAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHTVHQE 60
Query: 370 GKPVTNQKSSGRCWIFSCLNVMRLPFMRKLNIEEFEFSQSYLFFWDKVERCYFFLNAFVD 549
GKPVTNQKSSGRCWIFSCLNVMRLPFMRKLNIEEFEFSQSYLFFWDKVERCYFFLNAFVD
Sbjct: 61 GKPVTNQKSSGRCWIFSCLNVMRLPFMRKLNIEEFEFSQSYLFFWDKVERCYFFLNAFVD 120
Query: 550 TAQKKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMNDI 729
TAQKKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMNDI
Sbjct: 121 TAQKKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMNDI 180
Query: 730 LNHKMR 747
LNHK++
Sbjct: 181 LNHKVQ 186
>ref|XP_003131850.2| PREDICTED: bleomycin hydrolase-like [Sus scrofa].
Length = 242
Score = 119 bits (298), Expect = 3e-27
Identities = 53/57 (92%), Positives = 55/57 (96%)
Frame = +1
Query: 832 EIFRVVCICLGNPPETFTWEYRDKDKNYQKIGPITPLKFYRDHVQPLFNMEE*NCIV 1002
EIFRVVCICLGNPPETFTWEYRDKDKNYQKIGPITPLKFYRDHV+PLFNME+ CIV
Sbjct: 2 EIFRVVCICLGNPPETFTWEYRDKDKNYQKIGPITPLKFYRDHVKPLFNMEDKICIV 58
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,532,009
Number of extensions: 768253
Number of successful extensions: 3194
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3186
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013654
(1004 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848760.1| bleomycin hydrolase [Mus musculus]. 525 e-149
>ref|NP_848760.1| bleomycin hydrolase [Mus musculus].
Length = 455
Score = 525 bits (1351), Expect = e-149
Identities = 248/271 (91%), Positives = 259/271 (95%)
Frame = +1
Query: 190 MNEAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHTVHQE 369
MN AGLNSEKV+AL+QKLNSDPQFVLAQNVGTTHDLLDICL+RATVQG QHVFQH V QE
Sbjct: 1 MNNAGLNSEKVSALIQKLNSDPQFVLAQNVGTTHDLLDICLRRATVQGAQHVFQHVVPQE 60
Query: 370 GKPVTNQKSSGRCWIFSCLNVMRLPFMRKLNIEEFEFSQSYLFFWDKVERCYFFLNAFVD 549
GKPVTNQKSSGRCWIFSCLNVMRLPFM+K NIEEFEFSQSYLFFWDKVERCYFFLNAFVD
Sbjct: 61 GKPVTNQKSSGRCWIFSCLNVMRLPFMKKFNIEEFEFSQSYLFFWDKVERCYFFLNAFVD 120
Query: 550 TAQKKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMNDI 729
TAQKKEPEDGRLVQ+LLMNP NDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMNDI
Sbjct: 121 TAQKKEPEDGRLVQYLLMNPTNDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMNDI 180
Query: 730 LNHKMREFCIRLRNLVHSGATKVEISATQDIMMEEIFRVVCICLGNPPETFTWEYRDKDK 909
LNHKMREFCIRLRNLVHSGATK EIS+TQD MMEEIFRVVCICLGNPPETFTWEYRDKDK
Sbjct: 181 LNHKMREFCIRLRNLVHSGATKGEISSTQDAMMEEIFRVVCICLGNPPETFTWEYRDKDK 240
Query: 910 NYQKIGPITPLKFYRDHVQPLFNMEE*NCIV 1002
NY KIGPITPL+FY++HV+PLFNME+ C V
Sbjct: 241 NYHKIGPITPLQFYKEHVKPLFNMEDKICFV 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,886,725
Number of extensions: 1022456
Number of successful extensions: 3970
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3959
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013654
(1004 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000377.1| bleomycin hydrolase [Homo sapiens]. 525 e-149
>ref|NP_000377.1| bleomycin hydrolase [Homo sapiens].
Length = 455
Score = 525 bits (1353), Expect = e-149
Identities = 248/271 (91%), Positives = 263/271 (97%)
Frame = +1
Query: 190 MNEAGLNSEKVAALLQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQGTQHVFQHTVHQE 369
M+ +GLNSEKVAAL+QKLNSDPQFVLAQNVGTTHDLLDICLKRATVQ QHVFQH V QE
Sbjct: 1 MSSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQE 60
Query: 370 GKPVTNQKSSGRCWIFSCLNVMRLPFMRKLNIEEFEFSQSYLFFWDKVERCYFFLNAFVD 549
GKP+TNQKSSGRCWIFSCLNVMRLPFM+KLNIEEFEFSQSYLFFWDKVERCYFFL+AFVD
Sbjct: 61 GKPITNQKSSGRCWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVD 120
Query: 550 TAQKKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMNDI 729
TAQ+KEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGV+PKKCFPES+TTEATRRMNDI
Sbjct: 121 TAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDI 180
Query: 730 LNHKMREFCIRLRNLVHSGATKVEISATQDIMMEEIFRVVCICLGNPPETFTWEYRDKDK 909
LNHKMREFCIRLRNLVHSGATK EISATQD+MMEEIFRVVCICLGNPPETFTWEYRDKDK
Sbjct: 181 LNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDK 240
Query: 910 NYQKIGPITPLKFYRDHVQPLFNMEE*NCIV 1002
NYQKIGPITPL+FYR+HV+PLFNME+ C+V
Sbjct: 241 NYQKIGPITPLEFYREHVKPLFNMEDKICLV 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,273,062
Number of extensions: 1217784
Number of successful extensions: 4872
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4843
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013654
(1004 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 404 e-110
>Sscrofa_Chr12
|| Length = 63588571
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 198 agcaggactgaattcggagaaggtagctgctctgcttcagaaactgaattccgaccccca 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48192214 agcaggactgaattcggagaaggtagctgctctgcttcagaaactgaattccgaccccca 48192155
Query: 258 gttcgtactggcccagaatgtcggcaccacccacgatctgctggacatctgtctgaagag 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48192154 gttcgtactggcccagaatgtcggcaccacccacgatctgctggacatctgtctgaagag 48192095
Query: 318 ggccacggtccagggtactcagcatgtgttccagcacacggtgcatcaggagggcaagcc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48192094 ggccacggtccagggtactcagcatgtgttccagcacacggtgcatcaggagggcaagcc 48192035
Query: 378 agtcaccaaccagaagagctcagg 401
||||||||||||||||||||||||
Sbjct: 48192034 agtcaccaaccagaagagctcagg 48192011
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 1 gttttgtccctccgcggaccccgtttccctcgccctcagccctccgccgccaccgagccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48192736 gttttgtccctccgcggaccccgtttccctcgccctcagccctccgccgccaccgagccg 48192677
Query: 61 gtttcctctttccggcgccccgggtgcgagaggctggtccagccgcttgggttagcgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48192676 gtttcctctttccggcgccccgggtgcgagaggctggtccagccgcttgggttagcgagt 48192617
Query: 121 cgctctgctgtccggctcttgtctgaggaccccgaaactaccgttccccggccaggcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48192616 cgctctgctgtccggctcttgtctgaggaccccgaaactaccgttccccggccaggcagc 48192557
Query: 181 gtgggcgccatgaacgaagcagg 203
|||||||||||||||||||||||
Sbjct: 48192556 gtgggcgccatgaacgaagcagg 48192534
Score = 291 bits (147), Expect = 4e-76
Identities = 152/154 (98%)
Strand = Plus / Plus
Query: 833 agatattcagagtggtgtgcatctgtctgggtaatccaccggagacattcacctgggaat 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48149956 agatattcagagtggtgtgcatctgtctgggtaatccaccggagacattcacctgggaat 48150015
Query: 893 atcgagacaaagacaaaaactatcagaagattggccccataacacccttgaagttttaca 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48150016 atcgagacaaagacaaaaactatcagaagattggccccataacacccttgaagttttaca 48150075
Query: 953 gggatcatgtncagccactcttcaacatggaaga 986
|||||||||| ||||||||||||||||||||||
Sbjct: 48150076 gggatcatgtcaagccactcttcaacatggaaga 48150109
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 509 aggttgaacgctgttatttcttcttaaatgcttttgtggatacagcccagaaaaaggagc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48187570 aggttgaacgctgttatttcttcttaaatgcttttgtggatacagcccagaaaaaggagc 48187511
Query: 569 ctgaggatggtaggctggtgcagtttctgcttatgaatcctgcaaatgatggtggacaat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48187510 ctgaggatggtaggctggtgcagtttctgcttatgaatcctgcaaatgatggtggacaat 48187451
Query: 629 gggatatgcttgtcaatattgttg 652
||||||||||||||||||||||||
Sbjct: 48187450 gggatatgcttgtcaatattgttg 48187427
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 397 tcaggacgatgctggatcttctcctgtctgaatgttatgagacttccattcatgagaaaa 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48188491 tcaggacgatgctggatcttctcctgtctgaatgttatgagacttccattcatgagaaaa 48188432
Query: 457 ttaaatattgaagaatttgagtttagtcagtcttacctctttttctgggacaaggt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48188431 ttaaatattgaagaatttgagtttagtcagtcttacctctttttctgggacaaggt 48188376
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 652 gaaaaatatggtgtcgtccctaagaagtgcttccctgaatctcatacgacagaggcaacc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48186452 gaaaaatatggtgtcgtccctaagaagtgcttccctgaatctcatacgacagaggcaacc 48186393
Query: 712 agaagaatgaatgatattctgaatcacaag 741
||||||||||||||||||||||||||||||
Sbjct: 48186392 agaagaatgaatgatattctgaatcacaag 48186363
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,261,422
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 6
Length of query: 1004
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 983
Effective length of database: 2,808,413,156
Effective search space: 2760670132348
Effective search space used: 2760670132348
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)