Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013655
(1341 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069551.1| phosphomannomutase 1 [Bos taurus]. 517 e-146
Alignment gi|NP_001030267.1| phosphomannomutase 2 [Bos taurus]. 345 4e-95
>ref|NP_001069551.1| phosphomannomutase 1 [Bos taurus].
Length = 262
Score = 517 bits (1331), Expect = e-146
Identities = 252/257 (98%), Positives = 255/257 (99%)
Frame = +1
Query: 343 EGARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGE 522
EGARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGE
Sbjct: 6 EGARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGE 65
Query: 523 GDEVVEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKR 702
GDEV+EKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCL YMALLRLPKKR
Sbjct: 66 GDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLRYMALLRLPKKR 125
Query: 703 GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG 882
GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG
Sbjct: 126 GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG 185
Query: 883 MISFDVFPEGWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQD 1062
MISFDVFPEGWDKRYCLD LDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQD
Sbjct: 186 MISFDVFPEGWDKRYCLDSLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQD 245
Query: 1063 TVQRCREIFFPETAHEA 1113
TVQRCRE+FFPETAH+A
Sbjct: 246 TVQRCRELFFPETAHKA 262
>ref|NP_001030267.1| phosphomannomutase 2 [Bos taurus].
Length = 246
Score = 345 bits (886), Expect = 4e-95
Identities = 163/240 (67%), Positives = 201/240 (83%)
Frame = +1
Query: 370 LCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVVEKFD 549
LCLFDVDGTLT RQKI ++ FLQKLR +++IGVVGGSD+ K+ EQLG D+V++K+D
Sbjct: 8 LCLFDVDGTLTAPRQKITKDMDCFLQKLRQKIKIGVVGGSDFEKVQEQLG--DDVIKKYD 65
Query: 550 YVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKRGTFIEFRNG 729
YVF ENG V Y+ G+LL KQ IQ HLGE L+QDLIN+CL Y+A ++LPKKRGTFIEFRNG
Sbjct: 66 YVFPENGLVAYRDGKLLCKQNIQGHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNG 125
Query: 730 MLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPE 909
MLN+SPIGRSC+ EERIEF ELD+KE IR+KFVE L+ EFAGKGL FS GG ISFDVFP+
Sbjct: 126 MLNVSPIGRSCSQEERIEFYELDQKENIRQKFVEDLRKEFAGKGLTFSIGGQISFDVFPD 185
Query: 910 GWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQDTVQRCREIF 1089
GWDKRYCL +++D + TI+FFG++T PGGND EI+TDPRTVG++V +P+DT + C E+F
Sbjct: 186 GWDKRYCLGHVEKDGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVAAPEDTRRICEELF 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,010,373
Number of extensions: 2328873
Number of successful extensions: 14199
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13815
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 342
Effective length of database: 14,207,134
Effective search space: 4858839828
Effective search space used: 4858839828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013655
(1341 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531715.2| PREDICTED: similar to Phosphomannomutase 1 (PMM... 473 e-133
Alignment gi|XP_547133.2| PREDICTED: similar to Phosphomannomutase 2 (PMM... 341 1e-93
>ref|XP_531715.2| PREDICTED: similar to Phosphomannomutase 1 (PMM 1) (PMMH-22) [Canis
familiaris].
Length = 253
Score = 473 bits (1218), Expect = e-133
Identities = 233/250 (93%), Positives = 239/250 (95%), Gaps = 3/250 (1%)
Frame = +1
Query: 373 CLFD---VDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVVEK 543
C FD ++ +T A++KIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEV+EK
Sbjct: 4 CYFDPPFINEAVTKAKKKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVIEK 63
Query: 544 FDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKRGTFIEFR 723
FDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCL YMALLRLPKKRGTFIEFR
Sbjct: 64 FDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLRYMALLRLPKKRGTFIEFR 123
Query: 724 NGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVF 903
NGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVF
Sbjct: 124 NGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVF 183
Query: 904 PEGWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQDTVQRCRE 1083
PEGWDKRYCLD LDQD FDTIHFFGNETSPGGNDFEIY DPRTVGHSVVSPQDTVQRCRE
Sbjct: 184 PEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIYADPRTVGHSVVSPQDTVQRCRE 243
Query: 1084 IFFPETAHEA 1113
IFFPETAHEA
Sbjct: 244 IFFPETAHEA 253
>ref|XP_547133.2| PREDICTED: similar to Phosphomannomutase 2 (PMM 2) [Canis
familiaris].
Length = 246
Score = 341 bits (874), Expect = 1e-93
Identities = 163/240 (67%), Positives = 197/240 (82%)
Frame = +1
Query: 370 LCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVVEKFD 549
LCLFDVDGTLT RQKI E+ FLQ LR R++IGVVGGSD+ K+ EQLG ++VV+K+D
Sbjct: 8 LCLFDVDGTLTAPRQKITEEMDGFLQNLRQRIKIGVVGGSDFEKVQEQLG--NDVVKKYD 65
Query: 550 YVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKRGTFIEFRNG 729
YVF ENG V YK G+LL KQ IQ HLGE L+QDLIN+CL Y+A ++LPKKRGTFIEFRNG
Sbjct: 66 YVFPENGLVAYKDGKLLCKQNIQGHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNG 125
Query: 730 MLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPE 909
MLN+SPIGRSC+ EERIEF ELDKKE IR+KFV L+ EFAGKG+ FS GG IS DVFP+
Sbjct: 126 MLNVSPIGRSCSQEERIEFHELDKKENIRQKFVADLRKEFAGKGVTFSIGGQISIDVFPD 185
Query: 910 GWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQDTVQRCREIF 1089
GWDKRYCL ++ D + TI+FFG++T PGGND EI+TDPRTVG++V +P+DT + C E+F
Sbjct: 186 GWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVTAPEDTRRICEELF 245
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,847,882
Number of extensions: 2414647
Number of successful extensions: 15213
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14780
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 341
Effective length of database: 15,340,888
Effective search space: 5231242808
Effective search space used: 5231242808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013655
(1341 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171824.1| phosphomannomutase 1 [Sus scrofa]. 526 e-150
Alignment gi|XP_003124660.2| PREDICTED: phosphomannomutase 2-like [Sus sc... 72 5e-13
>ref|NP_001171824.1| phosphomannomutase 1 [Sus scrofa].
Length = 262
Score = 526 bits (1356), Expect = e-150
Identities = 257/257 (100%), Positives = 257/257 (100%)
Frame = +1
Query: 343 EGARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGE 522
EGARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGE
Sbjct: 6 EGARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGE 65
Query: 523 GDEVVEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKR 702
GDEVVEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKR
Sbjct: 66 GDEVVEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKR 125
Query: 703 GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG 882
GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG
Sbjct: 126 GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG 185
Query: 883 MISFDVFPEGWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQD 1062
MISFDVFPEGWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQD
Sbjct: 186 MISFDVFPEGWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQD 245
Query: 1063 TVQRCREIFFPETAHEA 1113
TVQRCREIFFPETAHEA
Sbjct: 246 TVQRCREIFFPETAHEA 262
>ref|XP_003124660.2| PREDICTED: phosphomannomutase 2-like [Sus scrofa].
Length = 72
Score = 72.4 bits (176), Expect = 5e-13
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +1
Query: 370 LCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLG 519
LCLFDVDGTLT RQKI ++ FLQ+LR +++IGVVGGSD+ K+ EQLG
Sbjct: 8 LCLFDVDGTLTAPRQKITEDMDCFLQELRQKIKIGVVGGSDFEKVQEQLG 57
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,271,762
Number of extensions: 1523589
Number of successful extensions: 9709
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9428
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,804,438
Effective search space: 3037531110
Effective search space used: 3037531110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013655
(1341 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038900.1| phosphomannomutase 1 [Mus musculus]. 507 e-144
Alignment gi|NP_058577.1| phosphomannomutase 2 [Mus musculus]. 337 1e-92
>ref|NP_038900.1| phosphomannomutase 1 [Mus musculus].
Length = 262
Score = 507 bits (1305), Expect = e-144
Identities = 246/257 (95%), Positives = 252/257 (98%)
Frame = +1
Query: 343 EGARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGE 522
EGARRKER+LCLFDVDGTLTPARQKIDPEV+AFLQKLRSRVQIGVVGGSDYSKIAEQLGE
Sbjct: 6 EGARRKERILCLFDVDGTLTPARQKIDPEVSAFLQKLRSRVQIGVVGGSDYSKIAEQLGE 65
Query: 523 GDEVVEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKR 702
GDEV+EKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCL YMALLRLPKKR
Sbjct: 66 GDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKR 125
Query: 703 GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG 882
GTFIEFRNGMLN+SPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG
Sbjct: 126 GTFIEFRNGMLNVSPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG 185
Query: 883 MISFDVFPEGWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQD 1062
MISFDVFPEGWDKRYCLD LD+D FD IHFFGNETSPGGNDFEIY DPRTVGHSVVSPQD
Sbjct: 186 MISFDVFPEGWDKRYCLDSLDEDSFDIIHFFGNETSPGGNDFEIYADPRTVGHSVVSPQD 245
Query: 1063 TVQRCREIFFPETAHEA 1113
TVQRCRE+FFPETAHEA
Sbjct: 246 TVQRCRELFFPETAHEA 262
>ref|NP_058577.1| phosphomannomutase 2 [Mus musculus].
Length = 242
Score = 337 bits (864), Expect = 1e-92
Identities = 163/240 (67%), Positives = 196/240 (81%)
Frame = +1
Query: 370 LCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVVEKFD 549
LCLFD+DGTLT RQKI E+ FLQKLR + +IGVVGGSD+ K+ EQLG ++VVEK+D
Sbjct: 4 LCLFDMDGTLTAPRQKITEEMDGFLQKLRQKTKIGVVGGSDFEKLQEQLG--NDVVEKYD 61
Query: 550 YVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKRGTFIEFRNG 729
YVF ENG V YK G+LL KQ IQ HLGE+++QDLIN+CL Y+A ++LPKKRGTFIEFRNG
Sbjct: 62 YVFPENGLVAYKDGKLLCKQNIQGHLGEDVIQDLINYCLSYIANIKLPKKRGTFIEFRNG 121
Query: 730 MLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPE 909
MLN+SPIGRSC+ EERIEF ELDKKE IR+KFV L+ EFAGKGL FS GG IS DVFPE
Sbjct: 122 MLNVSPIGRSCSQEERIEFYELDKKEHIRQKFVADLRKEFAGKGLTFSIGGQISIDVFPE 181
Query: 910 GWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQDTVQRCREIF 1089
GWDKRYCL L+ + TI+FFG++T PGGND EI+TDPRTVG++V +P+DT + C +F
Sbjct: 182 GWDKRYCLRHLEHAGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVTAPEDTRRICEGLF 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,509,080
Number of extensions: 1869361
Number of successful extensions: 10411
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10085
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 342
Effective length of database: 12,463,779
Effective search space: 4262612418
Effective search space used: 4262612418
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013655
(1341 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002667.2| phosphomannomutase 1 [Homo sapiens]. 505 e-143
Alignment gi|NP_000294.1| phosphomannomutase 2 [Homo sapiens]. 342 6e-94
>ref|NP_002667.2| phosphomannomutase 1 [Homo sapiens].
Length = 262
Score = 505 bits (1300), Expect = e-143
Identities = 247/257 (96%), Positives = 251/257 (97%)
Frame = +1
Query: 343 EGARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGE 522
+ ARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDY KIAEQLG+
Sbjct: 6 QAARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKIAEQLGD 65
Query: 523 GDEVVEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKR 702
GDEV+EKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCL YMALLRLPKKR
Sbjct: 66 GDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKR 125
Query: 703 GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG 882
GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG
Sbjct: 126 GTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGG 185
Query: 883 MISFDVFPEGWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQD 1062
MISFDVFPEGWDKRYCLD LDQD FDTIHFFGNETSPGGNDFEI+ DPRTVGHSVVSPQD
Sbjct: 186 MISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSPQD 245
Query: 1063 TVQRCREIFFPETAHEA 1113
TVQRCREIFFPETAHEA
Sbjct: 246 TVQRCREIFFPETAHEA 262
>ref|NP_000294.1| phosphomannomutase 2 [Homo sapiens].
Length = 246
Score = 342 bits (876), Expect = 6e-94
Identities = 164/240 (68%), Positives = 199/240 (82%)
Frame = +1
Query: 370 LCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVVEKFD 549
LCLFDVDGTLT RQKI E+ FLQKLR +++IGVVGGSD+ K+ EQLG ++VVEK+D
Sbjct: 8 LCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQEQLG--NDVVEKYD 65
Query: 550 YVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLHYMALLRLPKKRGTFIEFRNG 729
YVF ENG V YK G+LL +Q IQ+HLGE L+QDLIN+CL Y+A ++LPKKRGTFIEFRNG
Sbjct: 66 YVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNG 125
Query: 730 MLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPE 909
MLN+SPIGRSC+ EERIEF ELDKKE IR+KFV L+ EFAGKGL FS GG ISFDVFP+
Sbjct: 126 MLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPD 185
Query: 910 GWDKRYCLDCLDQDCFDTIHFFGNETSPGGNDFEIYTDPRTVGHSVVSPQDTVQRCREIF 1089
GWDKRYCL ++ D + TI+FFG++T PGGND EI+TDPRT+G+SV +P+DT + C +F
Sbjct: 186 GWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTAPEDTRRICELLF 245
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,013,992
Number of extensions: 2312299
Number of successful extensions: 13589
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13190
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 341
Effective length of database: 14,802,980
Effective search space: 5047816180
Effective search space used: 5047816180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013655
(1341 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 630 e-178
Sscrofa_Chr03 62 8e-07
>Sscrofa_Chr05
|| Length = 111506441
Score = 630 bits (318), Expect = e-178
Identities = 344/350 (98%), Gaps = 2/350 (0%)
Strand = Plus / Plus
Query: 994 ggcgggaacgactttgaaatctacaccgacccccggaccgttggccacagcgtggtgtcc 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4347163 ggcgggaacgactttgaaatctacaccgacccccggaccgttggccacagcgtggtgtcc 4347222
Query: 1054 ccgcaggacactgtgcagcgatgccgtgagatctttttcccagagacggctcacgaggcg 1113
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 4347223 ccgcaggacaccgtgcagcgatgccgggagatatttttcccagagacggctcacgaggcg 4347282
Query: 1114 tgaccaggggccctcgggacttccagaaagctctgcctaggcctgaagagagcccctggc 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4347283 tgaccaggggccctcgggacttccagaaagctctgcctaggcctgaagagagcccctggc 4347342
Query: 1174 cctggtgtgtcggggaaaggcagggggcaccggaacccctcctgttacctgctgaaggcc 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4347343 cctggtgtgtcggggaaaggcagggggcaccggaacccctcctgttacctgctgaaggcc 4347402
Query: 1234 cacctccgtgggcccagggtcta-ggggacagccacccccagcccgtctgcccctgtggg 1292
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4347403 cacctccgtgggcccagggtctagggggacagccacccccagcccgtctgcccctgtggg 4347462
Query: 1293 actggcccccgtcct-caacccagggccctggctacagctgctgcccgca 1341
||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 4347463 actggcccccgtcctccaccccagggccctggctacagctgctgcccgca 4347512
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 2 ctcacttcccgccggacccaagtcagacccgggcccaggcccagcctccatctggtttgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336780 ctcacttcccgccggacccaagtcagacccgggcccaggcccagcctccatctggtttgc 4336839
Query: 62 aaaaatccgaaggaccctgccgggctttgctccgccctatgctacgccccttctccgcct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336840 aaaaatccgaaggaccctgccgggctttgctccgccctatgctacgccccttctccgcct 4336899
Query: 122 ggtaccatcagaattaacctcccgagtgagctcaggccccacccctgcccggtaccccgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336900 ggtaccatcagaattaacctcccgagtgagctcaggccccacccctgcccggtaccccgg 4336959
Query: 182 gagaacgt 189
||||||||
Sbjct: 4336960 gagaacgt 4336967
Score = 305 bits (154), Expect = 3e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 257 gtctagcgtcttccccacgcggctccggcggccgcatccttcgactcagctccgtgagct 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337035 gtctagcgtcttccccacgcggctccggcggccgcatccttcgactcagctccgtgagct 4337094
Query: 317 gagctgcaaccatggcggtcaccgctgagggcgcccgtaggaaggagcgcgtcctttgcc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4337095 gagctgcaaccatggcggtcaccgctgagggcgcccgtaggaaggagcgcgtcctctgcc 4337154
Query: 377 tgtttgacgtggacggtaccctcacgccggctcgccag 414
||||||||||||||||||||||||||||||||||||||
Sbjct: 4337155 tgtttgacgtggacggtaccctcacgccggctcgccag 4337192
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 412 cagaaaattgaccctgaggtggctgccttcctgcagaagctgcgcagtagggtgcagatc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339553 cagaaaattgaccctgaggtggctgccttcctgcagaagctgcgcagtagggtgcagatc 4339612
Query: 472 ggcgtggtgggcggctccgactactctaagattgccgagcagctgggagagggggatgaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339613 ggcgtggtgggcggctccgactactctaagattgccgagcagctgggagagggggatgaa 4339672
Query: 532 g 532
|
Sbjct: 4339673 g 4339673
Score = 228 bits (115), Expect = 6e-57
Identities = 118/119 (99%)
Strand = Plus / Plus
Query: 876 aggaggcatgatcagctttgacgtcttccctgagggctgggacaagcgctactgcctgga 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346665 aggaggcatgatcagctttgacgtcttccctgagggctgggacaagcgctactgcctgga 4346724
Query: 936 ctgcctggaccaggactgcttcgacaccatccacttctttgggaatgagaccagccctg 994
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4346725 ctgcctggaccaggactgctttgacaccatccacttctttgggaatgagaccagccctg 4346783
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 701 ggggaaccttcatcgagttccggaacggcatgctgaacatctcgcccatcggccgcagct 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4342212 ggggaaccttcatcgagttccggaacggcatgctgaacatctcgcccatcggccgcagct 4342271
Query: 761 gcaccctggaggagcgcatcgagttctccgagctggacaag 801
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 4342272 gcaccctggaggagcgcatcgagttctccgagctggacaag 4342312
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 607 cagaccatccagaaccacctgggcgaggaactcctgcaggacttgatcaatttctgcctc 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4341948 cagaccatccagaaccacctgggcgaggaactcctgcaggacttgatcaatttctgcctc 4342007
Query: 667 cactacatggccctgctcaggctgcccaagaagcgg 702
||||||||||||||||||||||||||||||||||||
Sbjct: 4342008 cactacatggccctgctcaggctgcccaagaagcgg 4342043
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 528 tgaagtcgtcgagaagtttgattatgtgtttgctgagaacggaaccgtgcagtataagca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4341747 tgaagtcgtcgagaagtttgattatgtgtttgctgagaacggaaccgtgcagtataagca 4341806
Query: 588 cggacgactactgtccaagcag 609
||||||||||||||||||||||
Sbjct: 4341807 cggacgactactgtccaagcag 4341828
Score = 149 bits (75), Expect = 5e-33
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 800 agaaggagaagatccgggagaagtttgtggaagccctgaaaacagagtttgccggcaaag 859
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4345972 agaaggagaagatccgggagaagtttgtggaagccctgaaaacagaatttgccggcaaag 4346031
Query: 860 ggctgaggttctcccgagg 878
|||||||||||||||||||
Sbjct: 4346032 ggctgaggttctcccgagg 4346050
>Sscrofa_Chr03
|| Length = 144787322
Score = 61.9 bits (31), Expect = 8e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 876 aggaggcatgatcagctttgacgtcttccctgagggctgggacaagcgctactgcctgg 934
||||||| |||||||||||| |||||||| || |||||||||||| | ||||||||||
Sbjct: 34798683 aggaggccagatcagctttgatgtcttccccgacggctgggacaagaggtactgcctgg 34798625
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,322,311
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 10
Length of query: 1341
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1320
Effective length of database: 2,808,413,156
Effective search space: 3707105365920
Effective search space used: 3707105365920
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)