Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013665
(922 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534737.2| PREDICTED: similar to smoothelin isoform c isof... 207 9e-54
Alignment gi|XP_852567.1| PREDICTED: similar to smoothelin isoform a isof... 207 9e-54
Alignment gi|XP_865930.1| PREDICTED: similar to smoothelin isoform b isof... 207 9e-54
>ref|XP_534737.2| PREDICTED: similar to smoothelin isoform c isoform 1 [Canis
familiaris].
Length = 915
Score = 207 bits (528), Expect = 9e-54
Identities = 121/234 (51%), Positives = 130/234 (55%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADE LAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELQREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELTALLRGA EY
Sbjct: 61 NKENWLHSQQQEAEQRAALARLAGRLESMNDVEELTALLRGAGEYEERKLIRAAIRRIRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRLCSGRPN GSRE+SKGRA+HRLE+CEV + ++QE EVPEPTP P GT
Sbjct: 121 QEIEAATLAGRLCSGRPNGGSREESKGRAAHRLEQCEVPEQEKQEQHTEVPEPTPTPQGT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
SRDVTTVTLLLRAP G A+AQ PAAE +GSP
Sbjct: 181 SRDVTTVTLLLRAPPGGTPSLPASPVSSPTTASPEPPLEPAEAQCPAAETVGSP 234
>ref|XP_852567.1| PREDICTED: similar to smoothelin isoform a isoform 2 [Canis
familiaris].
Length = 938
Score = 207 bits (528), Expect = 9e-54
Identities = 121/234 (51%), Positives = 130/234 (55%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADE LAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELQREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELTALLRGA EY
Sbjct: 61 NKENWLHSQQQEAEQRAALARLAGRLESMNDVEELTALLRGAGEYEERKLIRAAIRRIRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRLCSGRPN GSRE+SKGRA+HRLE+CEV + ++QE EVPEPTP P GT
Sbjct: 121 QEIEAATLAGRLCSGRPNGGSREESKGRAAHRLEQCEVPEQEKQEQHTEVPEPTPTPQGT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
SRDVTTVTLLLRAP G A+AQ PAAE +GSP
Sbjct: 181 SRDVTTVTLLLRAPPGGTPSLPASPVSSPTTASPEPPLEPAEAQCPAAETVGSP 234
>ref|XP_865930.1| PREDICTED: similar to smoothelin isoform b isoform 3 [Canis
familiaris].
Length = 913
Score = 207 bits (528), Expect = 9e-54
Identities = 121/234 (51%), Positives = 130/234 (55%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADE LAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELQREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELTALLRGA EY
Sbjct: 61 NKENWLHSQQQEAEQRAALARLAGRLESMNDVEELTALLRGAGEYEERKLIRAAIRRIRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRLCSGRPN GSRE+SKGRA+HRLE+CEV + ++QE EVPEPTP P GT
Sbjct: 121 QEIEAATLAGRLCSGRPNGGSREESKGRAAHRLEQCEVPEQEKQEQHTEVPEPTPTPQGT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
SRDVTTVTLLLRAP G A+AQ PAAE +GSP
Sbjct: 181 SRDVTTVTLLLRAPPGGTPSLPASPVSSPTTASPEPPLEPAEAQCPAAETVGSP 234
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,573,587
Number of extensions: 935598
Number of successful extensions: 3590
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3570
Number of HSP's successfully gapped: 3
Length of query: 307
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 205
Effective length of database: 15,474,232
Effective search space: 3172217560
Effective search space used: 3172217560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013665
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013665
(922 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070347.1| smoothelin [Bos taurus]. 195 5e-50
>ref|NP_001070347.1| smoothelin [Bos taurus].
Length = 904
Score = 195 bits (495), Expect = 5e-50
Identities = 120/235 (51%), Positives = 128/235 (54%), Gaps = 1/235 (0%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADETLAGLDEGALRKLLEVT D SKRFRAERQD
Sbjct: 1 MADETLAGLDEGALRKLLEVTTDLAERRRIRSAIRELQRQELEREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELTALLRGA EY
Sbjct: 61 NKENWLHSQQREAEQRAALARLAGRLESMNDVEELTALLRGAAEYEERKLIRAAIRRVRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRL SGRPNSGSREDSKG+A+ RLE CEV KP+EQ+ Q EVPEPTP P+ +
Sbjct: 121 QEIEAATLAGRLYSGRPNSGSREDSKGQAARRLEPCEVPKPEEQKQQVEVPEPTPTPSSS 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXA-KAQGPAAEALGSP 920
SRDVTTVTLLLRAP A +A PA EALGSP
Sbjct: 181 SRDVTTVTLLLRAPPRDTPSPPASADGSPTTTSPEPPLEPAEEALCPAPEALGSP 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,290,462
Number of extensions: 911841
Number of successful extensions: 3660
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3651
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,306,398
Effective search space: 2932811590
Effective search space used: 2932811590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013665
(922 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133017.1| PREDICTED: smoothelin [Sus scrofa]. 251 5e-67
Alignment gi|XP_001925250.1| PREDICTED: smoothelin isoform 1 [Sus scrofa]. 251 5e-67
>ref|XP_003133017.1| PREDICTED: smoothelin [Sus scrofa].
Length = 937
Score = 251 bits (640), Expect = 5e-67
Identities = 143/234 (61%), Positives = 143/234 (61%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADETLAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADETLAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SMSDVEELTALLRGAPEY
Sbjct: 61 NKENWLHSQQREAEQRAALARLAGRLESMSDVEELTALLRGAPEYEERKLIRAAIRRIRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT
Sbjct: 121 QEIEAATLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
SRDVTTVTLLLRAPLG AKAQGPAAEALGSP
Sbjct: 181 SRDVTTVTLLLRAPLGSTPSSPASPESSPSTTSPEPPLESAKAQGPAAEALGSP 234
>ref|XP_001925250.1| PREDICTED: smoothelin isoform 1 [Sus scrofa].
Length = 912
Score = 251 bits (640), Expect = 5e-67
Identities = 143/234 (61%), Positives = 143/234 (61%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADETLAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADETLAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SMSDVEELTALLRGAPEY
Sbjct: 61 NKENWLHSQQREAEQRAALARLAGRLESMSDVEELTALLRGAPEYEERKLIRAAIRRIRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT
Sbjct: 121 QEIEAATLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
SRDVTTVTLLLRAPLG AKAQGPAAEALGSP
Sbjct: 181 SRDVTTVTLLLRAPLGSTPSSPASPESSPSTTSPEPPLESAKAQGPAAEALGSP 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,268,687
Number of extensions: 592610
Number of successful extensions: 2300
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2286
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 208
Effective length of database: 8,879,129
Effective search space: 1846858832
Effective search space used: 1846858832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013665
(922 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038898.2| smoothelin [Mus musculus]. 170 2e-42
Alignment gi|NP_001152756.1| smoothelin [Mus musculus]. 170 2e-42
>ref|NP_038898.2| smoothelin [Mus musculus].
Length = 921
Score = 170 bits (430), Expect = 2e-42
Identities = 106/230 (46%), Positives = 117/230 (50%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADE LAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELT LLR A EY
Sbjct: 61 NKENWLHSQQREAEQQAALARLAGRLESMNDVEELTTLLRSAGEYEERKLIRAAIRRVRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRLCS P+SG REDS+ +A+H L+ +V +P++QE Q EV EPTP P T
Sbjct: 121 QEIKAATLAGRLCSRLPSSGPREDSRRQAAHTLDPGKVPEPEQQEQQTEVLEPTPTPEDT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEA 908
S+DVTTVTLLLRAP G A AQ PA EA
Sbjct: 181 SQDVTTVTLLLRAPPGGRPSSPASPHNSPTSASPEPLLEPAGAQCPAVEA 230
>ref|NP_001152756.1| smoothelin [Mus musculus].
Length = 921
Score = 170 bits (430), Expect = 2e-42
Identities = 106/230 (46%), Positives = 117/230 (50%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADE LAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELT LLR A EY
Sbjct: 61 NKENWLHSQQREAEQQAALARLAGRLESMNDVEELTTLLRSAGEYEERKLIRAAIRRVRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRLCS P+SG REDS+ +A+H L+ +V +P++QE Q EV EPTP P T
Sbjct: 121 QEIKAATLAGRLCSRLPSSGPREDSRRQAAHTLDPGKVPEPEQQEQQTEVLEPTPTPEDT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEA 908
S+DVTTVTLLLRAP G A AQ PA EA
Sbjct: 181 SQDVTTVTLLLRAPPGGRPSSPASPHNSPTSASPEPLLEPAGAQCPAVEA 230
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,636,963
Number of extensions: 737929
Number of successful extensions: 3074
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3056
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 206
Effective length of database: 12,583,923
Effective search space: 2592288138
Effective search space used: 2592288138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013665
(922 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193946.1| smoothelin isoform d [Homo sapiens]. 228 8e-60
Alignment gi|NP_599032.2| smoothelin isoform a [Homo sapiens]. 193 2e-49
Alignment gi|NP_599031.1| smoothelin isoform b [Homo sapiens]. 193 2e-49
Alignment gi|NP_008863.3| smoothelin isoform c [Homo sapiens]. 193 2e-49
Alignment gi|NP_001193947.1| smoothelin isoform e [Homo sapiens]. 164 1e-40
>ref|NP_001193946.1| smoothelin isoform d [Homo sapiens].
Length = 1002
Score = 228 bits (580), Expect = 8e-60
Identities = 136/261 (52%), Positives = 149/261 (57%)
Frame = +3
Query: 138 EFPELVSGATSTGELTRRGRTELGATKMADETLAGLDEGALRKLLEVTADXXXXXXXXXX 317
EF ELV+GAT TG+LTR+ TELGA++MADE LAGLDEGALRKLLEVTAD
Sbjct: 28 EFSELVTGATGTGDLTRKEPTELGASEMADEALAGLDEGALRKLLEVTADLAERRRIRSA 87
Query: 318 XXXXXXXXXXXXXXXXXSKRFRAERQDNKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVE 497
SKRFRAERQDNKENWLHS SM+DVE
Sbjct: 88 IRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQRAALARLAGQLESMNDVE 147
Query: 498 ELTALLRGAPEYXXXXXXXXXXXXXXXXXXXXXTLAGRLCSGRPNSGSREDSKGRASHRL 677
ELTALLR A EY TLAGRL SGRPNSGSREDSKG A+HRL
Sbjct: 148 ELTALLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLYSGRPNSGSREDSKGLAAHRL 207
Query: 678 ERCEVLKPQEQEHQAEVPEPTPAPNGTSRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXX 857
E+CEV + +EQE QAEV +PTP P GTS+DVTTVTLLLRAP G
Sbjct: 208 EQCEVPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPAS 267
Query: 858 XXXXXXXAKAQGPAAEALGSP 920
A+AQ AE GSP
Sbjct: 268 PEPPLEPAEAQCLTAEVPGSP 288
>ref|NP_599032.2| smoothelin isoform a [Homo sapiens].
Length = 940
Score = 193 bits (490), Expect = 2e-49
Identities = 118/234 (50%), Positives = 126/234 (53%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADE LAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELTALLR A EY
Sbjct: 61 NKENWLHSQQREAEQRAALARLAGQLESMNDVEELTALLRSAGEYEERKLIRAAIRRVRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRL SGRPNSGSREDSKG A+HRLE+CEV + +EQE QAEV +PTP P GT
Sbjct: 121 QEIEAATLAGRLYSGRPNSGSREDSKGLAAHRLEQCEVPEREEQEQQAEVSKPTPTPEGT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
S+DVTTVTLLLRAP G A+AQ AE GSP
Sbjct: 181 SQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSP 234
>ref|NP_599031.1| smoothelin isoform b [Homo sapiens].
Length = 915
Score = 193 bits (490), Expect = 2e-49
Identities = 118/234 (50%), Positives = 126/234 (53%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADE LAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELTALLR A EY
Sbjct: 61 NKENWLHSQQREAEQRAALARLAGQLESMNDVEELTALLRSAGEYEERKLIRAAIRRVRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRL SGRPNSGSREDSKG A+HRLE+CEV + +EQE QAEV +PTP P GT
Sbjct: 121 QEIEAATLAGRLYSGRPNSGSREDSKGLAAHRLEQCEVPEREEQEQQAEVSKPTPTPEGT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
S+DVTTVTLLLRAP G A+AQ AE GSP
Sbjct: 181 SQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSP 234
>ref|NP_008863.3| smoothelin isoform c [Homo sapiens].
Length = 917
Score = 193 bits (490), Expect = 2e-49
Identities = 118/234 (50%), Positives = 126/234 (53%)
Frame = +3
Query: 219 MADETLAGLDEGALRKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQD 398
MADE LAGLDEGALRKLLEVTAD SKRFRAERQD
Sbjct: 1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQD 60
Query: 399 NKENWLHSXXXXXXXXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXX 578
NKENWLHS SM+DVEELTALLR A EY
Sbjct: 61 NKENWLHSQQREAEQRAALARLAGQLESMNDVEELTALLRSAGEYEERKLIRAAIRRVRA 120
Query: 579 XXXXXXTLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGT 758
TLAGRL SGRPNSGSREDSKG A+HRLE+CEV + +EQE QAEV +PTP P GT
Sbjct: 121 QEIEAATLAGRLYSGRPNSGSREDSKGLAAHRLEQCEVPEREEQEQQAEVSKPTPTPEGT 180
Query: 759 SRDVTTVTLLLRAPLGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
S+DVTTVTLLLRAP G A+AQ AE GSP
Sbjct: 181 SQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSP 234
>ref|NP_001193947.1| smoothelin isoform e [Homo sapiens].
Length = 971
Score = 164 bits (414), Expect = 1e-40
Identities = 103/220 (46%), Positives = 111/220 (50%)
Frame = +3
Query: 261 RKLLEVTADXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRFRAERQDNKENWLHSXXXXXX 440
R LEVTAD SKRFRAERQDNKENWLHS
Sbjct: 71 RGRLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAE 130
Query: 441 XXXXXXXXXXXXXSMSDVEELTALLRGAPEYXXXXXXXXXXXXXXXXXXXXXTLAGRLCS 620
SM+DVEELTALLR A EY TLAGRL S
Sbjct: 131 QRAALARLAGQLESMNDVEELTALLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLYS 190
Query: 621 GRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGTSRDVTTVTLLLRAP 800
GRPNSGSREDSKG A+HRLE+CEV + +EQE QAEV +PTP P GTS+DVTTVTLLLRAP
Sbjct: 191 GRPNSGSREDSKGLAAHRLEQCEVPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAP 250
Query: 801 LGXXXXXXXXXXXXXXXXXXXXXXXXAKAQGPAAEALGSP 920
G A+AQ AE GSP
Sbjct: 251 PGSTSSSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSP 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,894,019
Number of extensions: 909000
Number of successful extensions: 3581
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3554
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,934,836
Effective search space: 3061641380
Effective search space used: 3061641380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013665
(922 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 466 e-128
>Sscrofa_Chr14
|| Length = 153851969
Score = 466 bits (235), Expect = e-128
Identities = 235/235 (100%)
Strand = Plus / Plus
Query: 688 aggtgctgaagccacaggaacaagagcaccaggcagaggtcccagagccaaccccagccc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999474 aggtgctgaagccacaggaacaagagcaccaggcagaggtcccagagccaaccccagccc 50999533
Query: 748 caaatggcaccagccgggatgtgaccacagtgacactcctgctgcgggccccacttggga 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999534 caaatggcaccagccgggatgtgaccacagtgacactcctgctgcgggccccacttggga 50999593
Query: 808 gcacacccagctcacctgcctcacctgaaagttcgcccagcactacctctcctgagcctc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999594 gcacacccagctcacctgcctcacctgaaagttcgcccagcactacctctcctgagcctc 50999653
Query: 868 cactggagtctgccaaggcccagggccctgctgccgaggctctgggcagccctga 922
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50999654 cactggagtctgccaaggcccagggccctgctgccgaggctctgggcagccctga 50999708
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 269 gttggaggtcacagcggatctggcagagcggcgacgcatccgttcggccattcgggagtt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50997575 gttggaggtcacagcggatctggcagagcggcgacgcatccgttcggccattcgggagtt 50997634
Query: 329 gcagcggcaggagttggagcgcgaggaggaagccctggcatccaagcgcttccgcgctga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50997635 gcagcggcaggagttggagcgcgaggaggaagccctggcatccaagcgcttccgcgctga 50997694
Query: 389 gcggcaggacaacaaggagaactggctgca 418
||||||||||||||||||||||||||||||
Sbjct: 50997695 gcggcaggacaacaaggagaactggctgca 50997724
Score = 274 bits (138), Expect = 8e-71
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 gcagaatcccagggacggttgctgagcgggtctgggatcccggtcgcggcgccttccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50990999 gcagaatcccagggacggttgctgagcgggtctgggatcccggtcgcggcgccttccgcc 50991058
Query: 61 tgaccgctcctagtccatctgttggataccaaaagacctaacctgagcccgcgccggacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50991059 tgaccgctcctagtccatctgttggataccaaaagacctaacctgagcccgcgccggacg 50991118
Query: 121 ggcgggccgggctgagag 138
||||||||||||||||||
Sbjct: 50991119 ggcgggccgggctgagag 50991136
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 137 agaattccctgagctggtgtcaggtgccacaagcactggggaactcaccaggagaggacg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50992884 agaattccctgagctggtgtcaggtgccacaagcactggggaactcaccaggagaggacg 50992943
Query: 197 gacggagctaggggccaccaagatggcggacgaaaccttagctgggctggatgagggagc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50992944 gacggagctaggggccaccaagatggcggacgaaaccttagctgggctggatgagggagc 50993003
Query: 257 cctgcggaagctg 269
|||||||||||||
Sbjct: 50993004 cctgcggaagctg 50993016
Score = 202 bits (102), Expect = 2e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 590 agctgccaccttggctggaaggctgtgcagcgggcgtcccaacagtggctcaagggagga 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998508 agctgccaccttggctggaaggctgtgcagcgggcgtcccaacagtggctcaagggagga 50998567
Query: 650 cagcaaggggcgggcatcacacaggctggaacggtgtgaggt 691
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998568 cagcaaggggcgggcatcacacaggctggaacggtgtgaggt 50998609
Score = 186 bits (94), Expect = 1e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 419 ctctcagcagcgggaggctgagcagcgggctgctctggcacggctggcaggacggctgga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998121 ctctcagcagcgggaggctgagcagcgggctgctctggcacggctggcaggacggctgga 50998180
Query: 479 gtccatgagtgatgtggaggagctgaccgctctg 512
||||||||||||||||||||||||||||||||||
Sbjct: 50998181 gtccatgagtgatgtggaggagctgaccgctctg 50998214
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 512 gctacgaggtgcccctgagtatgaggaacgcaagctgatccgagctgccatccgccgcat 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50998306 gctacgaggtgcccctgagtatgaggaacgcaagctgatccgagctgccatccgccgcat 50998365
Query: 572 ccgggcccaggagattgaag 591
||||||||||||||||||||
Sbjct: 50998366 ccgggcccaggagattgaag 50998385
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,684,455
Number of extensions: 148
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 7
Length of query: 922
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 901
Effective length of database: 2,808,413,156
Effective search space: 2530380253556
Effective search space used: 2530380253556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)