Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013666
(1263 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001250965.1| PREDICTED: IQ motif containing GTPase activa... 169 5e-42
Alignment gi|XP_002690482.1| PREDICTED: IQ motif containing GTPase activa... 70 3e-12
Alignment gi|XP_002696617.1| PREDICTED: IQ motif containing GTPase activa... 65 1e-10
Alignment gi|NP_001092350.1| ras GTPase-activating-like protein IQGAP3 [B... 55 1e-07
>ref|XP_001250965.1| PREDICTED: IQ motif containing GTPase activating protein 2 [Bos
taurus].
Length = 336
Score = 169 bits (428), Expect = 5e-42
Identities = 91/125 (72%), Positives = 94/125 (75%), Gaps = 3/125 (2%)
Frame = +3
Query: 63 EQAREESSLLLGCQRXXXXXXXDEGTPRERGAQLGAA---SEKPDTSAPAGRGAASLASE 233
E+AREESSLL GCQR DEG P + GA LG SEKPDTSAPAGRGAASLASE
Sbjct: 102 ERAREESSLLPGCQRAAAAAGADEGAPSQPGAYLGRPGGHSEKPDTSAPAGRGAASLASE 161
Query: 234 GXXXXXXXXXXXXLRRMPHEEQASLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHL 413
G RRMPHE+Q SLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHL
Sbjct: 162 GSRGGRAPGGPPEPRRMPHEDQPSLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHL 221
Query: 414 EEAKR 428
EEAKR
Sbjct: 222 EEAKR 226
>ref|XP_002690482.1| PREDICTED: IQ motif containing GTPase activating protein 2 [Bos
taurus].
Length = 1617
Score = 70.5 bits (171), Expect = 3e-12
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +3
Query: 327 SIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
+IVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR
Sbjct: 58 AIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 91
>ref|XP_002696617.1| PREDICTED: IQ motif containing GTPase activating protein 1 [Bos
taurus].
Length = 1657
Score = 65.5 bits (158), Expect = 1e-10
Identities = 28/34 (82%), Positives = 34/34 (100%)
Frame = +3
Query: 327 SIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
+++D+ERL+AEEMDERRRQN+AYEYLCHLEEAKR
Sbjct: 19 TVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKR 52
>ref|NP_001092350.1| ras GTPase-activating-like protein IQGAP3 [Bos taurus].
Length = 1635
Score = 55.5 bits (132), Expect = 1e-07
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = +3
Query: 342 ERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
ERL+AEEMDE+RRQNIAY+YLC LEEAKR
Sbjct: 14 ERLTAEEMDEQRRQNIAYQYLCRLEEAKR 42
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,359,239
Number of extensions: 1194041
Number of successful extensions: 3904
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3819
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013666
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013666
(1263 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536199.2| PREDICTED: similar to Ras GTPase-activating-lik... 76 6e-14
Alignment gi|XP_536318.2| PREDICTED: similar to Ras GTPase-activating-lik... 72 1e-12
Alignment gi|XP_547533.2| PREDICTED: similar to IQ motif containing GTPas... 55 1e-07
>ref|XP_536199.2| PREDICTED: similar to Ras GTPase-activating-like protein IQGAP1
(p195) [Canis familiaris].
Length = 1657
Score = 76.3 bits (186), Expect = 6e-14
Identities = 33/39 (84%), Positives = 38/39 (97%)
Frame = +3
Query: 312 RPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
RP YGS++D+ERL+AEEMDERRRQN+AYEYLCHLEEAKR
Sbjct: 14 RPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKR 52
>ref|XP_536318.2| PREDICTED: similar to Ras GTPase-activating-like protein IQGAP2
[Canis familiaris].
Length = 1641
Score = 71.6 bits (174), Expect = 1e-12
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +3
Query: 324 GSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
G+IVDDERLSAEEMDERRRQN+AYEYLCHLEEAKR
Sbjct: 81 GAIVDDERLSAEEMDERRRQNMAYEYLCHLEEAKR 115
>ref|XP_547533.2| PREDICTED: similar to IQ motif containing GTPase activating protein
3 [Canis familiaris].
Length = 1692
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +3
Query: 342 ERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
ERL+AEEMDE+RRQN+AY+YLC LEEAKR
Sbjct: 75 ERLTAEEMDEQRRQNVAYQYLCRLEEAKR 103
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,289,431
Number of extensions: 1210584
Number of successful extensions: 3901
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3840
Number of HSP's successfully gapped: 3
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013666
(1263 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360744.1| PREDICTED: LOW QUALITY PROTEIN: ras GTPase-a... 66 5e-11
Alignment gi|XP_003125744.2| PREDICTED: ras GTPase-activating-like protei... 55 8e-08
>ref|XP_003360744.1| PREDICTED: LOW QUALITY PROTEIN: ras GTPase-activating-like protein
IQGAP1 [Sus scrofa].
Length = 1670
Score = 65.9 bits (159), Expect = 5e-11
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = +3
Query: 318 RYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
+ +++D+ERL+AEEMDERRRQN+AYEYLCHLEEAKR
Sbjct: 20 KISTVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKR 56
>ref|XP_003125744.2| PREDICTED: ras GTPase-activating-like protein IQGAP3 [Sus scrofa].
Length = 1640
Score = 55.1 bits (131), Expect = 8e-08
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +3
Query: 342 ERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
ERL+AEEMDE+RRQN+AY+YLC LEEAKR
Sbjct: 14 ERLTAEEMDEQRRQNVAYQYLCRLEEAKR 42
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,509,519
Number of extensions: 807659
Number of successful extensions: 2565
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2539
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013666
(1263 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081987.1| ras GTPase-activating-like protein IQGAP2 [Mus ... 99 9e-21
Alignment gi|NP_057930.2| ras GTPase-activating-like protein IQGAP1 [Mus ... 76 5e-14
Alignment gi|NP_001028656.1| IQ motif containing GTPase activating protei... 55 1e-07
>ref|NP_081987.1| ras GTPase-activating-like protein IQGAP2 [Mus musculus].
Length = 1575
Score = 98.6 bits (244), Expect = 9e-21
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = +3
Query: 282 MPHEEQASLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
MPHEE SLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR
Sbjct: 1 MPHEELPSLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 49
>ref|NP_057930.2| ras GTPase-activating-like protein IQGAP1 [Mus musculus].
Length = 1657
Score = 76.3 bits (186), Expect = 5e-14
Identities = 33/39 (84%), Positives = 38/39 (97%)
Frame = +3
Query: 312 RPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
RP YGS++D+ERL+AEEMDERRRQN+AYEYLCHLEEAKR
Sbjct: 14 RPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKR 52
>ref|NP_001028656.1| IQ motif containing GTPase activating protein 3 [Mus musculus].
Length = 1632
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +3
Query: 342 ERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
ERL+AEEMDE+RRQN+AY+YLC LEEAKR
Sbjct: 14 ERLTAEEMDEQRRQNVAYQYLCRLEEAKR 42
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,220,914
Number of extensions: 989138
Number of successful extensions: 2886
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2857
Number of HSP's successfully gapped: 3
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013666
(1263 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006624.2| ras GTPase-activating-like protein IQGAP2 [Homo... 99 1e-20
Alignment gi|NP_003861.1| ras GTPase-activating-like protein IQGAP1 [Homo... 76 6e-14
Alignment gi|NP_839943.2| ras GTPase-activating-like protein IQGAP3 [Homo... 55 1e-07
>ref|NP_006624.2| ras GTPase-activating-like protein IQGAP2 [Homo sapiens].
Length = 1575
Score = 98.6 bits (244), Expect = 1e-20
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = +3
Query: 282 MPHEEQASLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
MPHEE SLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR
Sbjct: 1 MPHEELPSLQRPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 49
>ref|NP_003861.1| ras GTPase-activating-like protein IQGAP1 [Homo sapiens].
Length = 1657
Score = 76.3 bits (186), Expect = 6e-14
Identities = 33/39 (84%), Positives = 38/39 (97%)
Frame = +3
Query: 312 RPRYGSIVDDERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
RP YGS++D+ERL+AEEMDERRRQN+AYEYLCHLEEAKR
Sbjct: 14 RPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKR 52
>ref|NP_839943.2| ras GTPase-activating-like protein IQGAP3 [Homo sapiens].
Length = 1631
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +3
Query: 342 ERLSAEEMDERRRQNIAYEYLCHLEEAKR 428
ERL+AEEMDE+RRQN+AY+YLC LEEAKR
Sbjct: 14 ERLTAEEMDEQRRQNVAYQYLCRLEEAKR 42
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,246,925
Number of extensions: 1176892
Number of successful extensions: 3754
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3689
Number of HSP's successfully gapped: 3
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013666
(1263 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1669 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1669 bits (842), Expect = 0.0
Identities = 923/942 (97%), Gaps = 7/942 (0%)
Strand = Plus / Plus
Query: 328 ctatcgtggacgatgaaagactctccgcagaggagatggatgagaggaggcggcagaata 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978297 ctatcgtggacgatgaaagactctccgcagaggagatggatgagaggaggcggcagaata 86978356
Query: 388 tcgcttatgaatatttgtgccacctggaggaagccaagaggtaagattgagacttagtcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978357 tcgcttatgaatatttgtgccacctggaggaagccaagaggtaagattgagacttagtcc 86978416
Query: 448 attggtgcaccttctcttggaaatgagccctatttttaataactcatttgcagtcttgat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978417 attggtgcaccttctcttggaaatgagccctatttttaataactcatttgcagtcttgat 86978476
Query: 508 agacaagaaatgggagcggaaccacctgccttttgttaatggaagaattgagaaaaggat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978477 agacaagaaatgggagcggaaccacctgccttttgttaatggaagaattgagaaaaggat 86978536
Query: 568 gctgcctcagccgaggtcaaggcattagggaggcaactcttcttttttcttcttcagagc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978537 gctgcctcagccgaggtcaaggcattagggaggcaactcttcttttttcttcttcagagc 86978596
Query: 628 ctcgcaggaaacctctaggcatattgcaggttatgtcacaatttctcctttcactggctt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978597 ctcgcaggaaacctctaggcatattgcaggttatgtcacaatttctcctttcactggctt 86978656
Query: 688 ggatgtgggggagcagcagagacttaaatcgactttcttttcctccagaccttcctcata 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978657 ggatgtgggggagcagcagagacttaaatcgactttcttttcctccagaccttcctcata 86978716
Query: 748 tctttctcccaaccctactccaatgctgatgatcattgctattattattaagtaacctac 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978717 tctttctcccaaccctactccaatgctgatgatcattgctattattattaagtaacctac 86978776
Query: 808 gatgatatatttctacatgaccagtagaaaacatagcatttcgaaccgaagtccattgat 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978777 gatgatatatttctacatgaccagtagaaaacatagcatttcgaaccgaagtccattgat 86978836
Query: 868 aactcagctggagtaggtttatggcaacagtcttcttttgaacccagcggtgtgtaacta 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978837 aactcagctggagtaggtttatggcaacagtcttcttttgaacccagcggtgtgtaacta 86978896
Query: 928 cctaagatatattgtctctaaaatcacattgactctttgtgactttttagattgcaagtn 987
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 86978897 cctaagatatattgtctctaaaatcacattgactctttgtgactttttagattacaagtc 86978956
Query: 988 catgttgggttgtctcangagaaagtgaagataaggaaacatttgcacttaggcctctgt 1047
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86978957 aatgttgggttgtctcaggagaaagtgaagataaggaaacatttgcacttaggcctctgt 86979016
Query: 1048 atcagggaactcagaaccttgtcctttgctgggtggatactgcagtgcccattcgccatg 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86979017 atcagggaactcagaaccttgtcctttgctgggtggatactgcagtgcccattcgccatg 86979076
Query: 1108 gggtagattctgattttatgctctgggctgggatcnnagcacagtattgttccagggaca 1167
|| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 86979077 ggttagattctgatttaatgctctgggctgggatcaagcaacagtattgttccagggaca 86979136
Query: 1168 gatacgtttcagctctcttatctctctag-aaataaac-cctggttaatgggtcg-tggt 1224
||||||||||||||||||||||||||||| |||||||| | |||||||| ||||| ||||
Sbjct: 86979137 gatacgtttcagctctcttatctctctagaaaataaacacttggttaat-ggtcgttggt 86979195
Query: 1225 g-tcatgacctctga-cactgat-aatagctgcttacagatc 1263
| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 86979196 gttcatgacctctgaccactgataaatagctgcttacagatc 86979237
Score = 470 bits (237), Expect = e-130
Identities = 237/237 (100%)
Strand = Plus / Plus
Query: 1 taacggggccgggctggaggagaaaggaaacctgtccgggaggcggcggcggcggcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86916888 taacggggccgggctggaggagaaaggaaacctgtccgggaggcggcggcggcggcagcc 86916947
Query: 61 gggagcaagcgagggaggagagttcacttttgctcgggtgtcagcgcgcggcggccgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86916948 gggagcaagcgagggaggagagttcacttttgctcgggtgtcagcgcgcggcggccgcag 86917007
Query: 121 cgggcgctgacgagggaacaccgagagagcggggcgcccaactcggggcggccagcgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86917008 cgggcgctgacgagggaacaccgagagagcggggcgcccaactcggggcggccagcgaga 86917067
Query: 181 agccggatacgagcgcgccggcggggcgcggagcggcgagcctggctagcgagggga 237
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Sbjct: 86917068 agccggatacgagcgcgccggcggggcgcggagcggcgagcctggctagcgagggga 86917124
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 271 agctgcgtaggatgccccacgaggagcaggcgtccctgcagagaccccgctatggct 327
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Sbjct: 86917158 agctgcgtaggatgccccacgaggagcaggcgtccctgcagagaccccgctatggct 86917214
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,184,441
Number of extensions: 824
Number of successful extensions: 824
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 3
Length of query: 1263
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1242
Effective length of database: 2,808,413,156
Effective search space: 3488049139752
Effective search space used: 3488049139752
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)