Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013667
(1243 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014852.1| p21-activated protein kinase-interacting pro... 595 e-170
Alignment gi|XP_002696296.1| PREDICTED: F-box and WD repeat domain contai... 76 7e-14
Alignment gi|XP_612428.5| PREDICTED: F-box and WD repeat domain containin... 76 7e-14
Alignment gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus]. 74 3e-13
Alignment gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta... 74 4e-13
Alignment gi|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos t... 72 1e-12
Alignment gi|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus]. 70 4e-12
Alignment gi|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partia... 70 4e-12
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 69 9e-12
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 69 1e-11
>ref|NP_001014852.1| p21-activated protein kinase-interacting protein 1 [Bos taurus].
Length = 392
Score = 595 bits (1533), Expect = e-170
Identities = 287/318 (90%), Positives = 304/318 (95%)
Frame = +1
Query: 289 MEVVAGCYEQVLFGFAVHPEPETSGSHERKWTPVADFTHHAHTASLSAVAVNSRFVVTGS 468
MEVVAGCYEQVLFGFAVHPEP G H +W PVADFTHHAHTASLSAVAVNSRFVVTGS
Sbjct: 1 MEVVAGCYEQVLFGFAVHPEPVGDG-HRERWAPVADFTHHAHTASLSAVAVNSRFVVTGS 59
Query: 469 KDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSI 648
KDETIHIYDMKKKVDHGAL+HHNGTITCLKF+GNRHLISGAEDGLICVWDA++WECLKSI
Sbjct: 60 KDETIHIYDMKKKVDHGALMHHNGTITCLKFHGNRHLISGAEDGLICVWDARRWECLKSI 119
Query: 649 KAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKY 828
+AHKGHVTFLSIHPSG+LALSVGTDKTLRTWNLVEGRSAFIKNIKQ+AHIVEWSP+GEKY
Sbjct: 120 RAHKGHVTFLSIHPSGRLALSVGTDKTLRTWNLVEGRSAFIKNIKQSAHIVEWSPKGEKY 179
Query: 829 VVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLS 1008
VVVILN+ID+Y+LDTASVSGTITN +RVSSVTFLSESVL VAGDEEVVRFFDCDSLTCLS
Sbjct: 180 VVVILNRIDVYQLDTASVSGTITNERRVSSVTFLSESVLTVAGDEEVVRFFDCDSLTCLS 239
Query: 1009 EFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCEINTNARLTCL 1188
EFKAHENRVKD+FSFETPEHHV+VTASSDGFIKMWKL++DKKVSPSLLCEINTNARLTCL
Sbjct: 240 EFKAHENRVKDMFSFETPEHHVLVTASSDGFIKMWKLKQDKKVSPSLLCEINTNARLTCL 299
Query: 1189 GVWLGNVTDTKESMPPAA 1242
GVWL TDTKES P AA
Sbjct: 300 GVWLDRRTDTKESPPAAA 317
>ref|XP_002696296.1| PREDICTED: F-box and WD repeat domain containing 11 [Bos taurus].
Length = 542
Score = 75.9 bits (185), Expect = 7e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 253 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 311
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 312 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 369
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 370 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 426
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 427 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 482
Query: 1150 LC 1155
LC
Sbjct: 483 LC 484
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 398 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 456
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 457 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 514
Query: 733 RTWNLV 750
W+ +
Sbjct: 515 LIWDFL 520
>ref|XP_612428.5| PREDICTED: F-box and WD repeat domain containing 11 isoform 1 [Bos
taurus].
Length = 542
Score = 75.9 bits (185), Expect = 7e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 253 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 311
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 312 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 369
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 370 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 426
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 427 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 482
Query: 1150 LC 1155
LC
Sbjct: 483 LC 484
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 398 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 456
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 457 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 514
Query: 733 RTWNLV 750
W+ +
Sbjct: 515 LIWDFL 520
>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
Length = 330
Score = 73.9 bits (180), Expect = 3e-13
Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 13/251 (5%)
Frame = +1
Query: 400 THHAHTASLSAVA--VNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNR 573
T H +S VA +S +V+ S D+T+ I+D++ L H+ + C F
Sbjct: 78 TLKGHNLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPS 137
Query: 574 HLI-SGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLV 750
+LI SG+ D + +W+ K +CLK++ AH V+ + + SG L +S D R W+
Sbjct: 138 NLIISGSFDESVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAA 197
Query: 751 EGR--SAFIKNIKQNAHIVEWSPRGEKYVVVIL-NKIDIYRLDTASVSGTITNAKRVSSV 921
G+ A + + V++SP G+ ++ L N + ++ T T K
Sbjct: 198 SGQCLKALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYC 257
Query: 922 TFLSESVLA----VAGDEE-VVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTA 1086
F S SV V+G E+ +V ++ + + + + H + V + + P ++I +A
Sbjct: 258 VFASFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV--ISAACHPTENIIASA 315
Query: 1087 S--SDGFIKMW 1113
+ +D +K+W
Sbjct: 316 ALGNDKTVKLW 326
Score = 67.8 bits (164), Expect = 2e-11
Identities = 58/253 (22%), Positives = 111/253 (43%), Gaps = 11/253 (4%)
Frame = +1
Query: 397 FTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGN 570
FT HT ++S+V + N ++ + S D+ I I+ L HN I+ + + +
Sbjct: 35 FTLEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTLKGHNLEISDVAWSSD 94
Query: 571 R-HLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNL 747
L+S ++D + +WD + +CLK++K H +V + +P L +S D++++ W +
Sbjct: 95 SSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDESVKIWEV 154
Query: 748 VEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNA------KR 909
G+ +K + ++ V +++ D + SG A
Sbjct: 155 KTGKC--LKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKALVDDDNPP 212
Query: 910 VSSVTFL-SESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVF-SFETPEHHVIVT 1083
VS V F + + +A + ++ +D CL + H+N VF SF IV+
Sbjct: 213 VSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCVFASFSVTGGKWIVS 272
Query: 1084 ASSDGFIKMWKLE 1122
S D + +W L+
Sbjct: 273 GSEDNLVYIWNLQ 285
>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
Length = 627
Score = 73.6 bits (179), Expect = 4e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 376 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 434
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 435 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 488
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 489 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 512
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 513 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 571
Query: 1120 E 1122
+
Sbjct: 572 K 572
Score = 70.9 bits (172), Expect = 2e-12
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Frame = +1
Query: 529 HHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H + ITCL+F GNR ++SG++D + VW A +CL+++ H G V S + +
Sbjct: 299 HDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIII 355
Query: 709 SVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILN--KIDIYRLDTASV 882
S TD+TL+ WN G I + + V EK VV + ++ ++T
Sbjct: 356 SGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 413
Query: 883 SGTIT-NAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFET 1059
+ + V V + V++ A D +V+ +D ++ TCL + H NR V+S +
Sbjct: 414 LHVLMGHVAAVRCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNR---VYSLQF 469
Query: 1060 PEHHVIVTASSDGFIKMWKLE 1122
HV V+ S D I++W +E
Sbjct: 470 DGIHV-VSGSLDTSIRVWDVE 489
Score = 52.4 bits (124), Expect = 8e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 436 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 495
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 496 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 554
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 555 N--FVITSSDDGTVKLWDLKTGE--FIRNL 580
>ref|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos taurus].
Length = 569
Score = 72.0 bits (175), Expect = 1e-12
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+V+G +D TI I+D L H G++ CL+ Y R +I+G+ D + VWD E
Sbjct: 280 IVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQ-YDERVIITGSSDSTVRVWDVNTGE 338
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + + + ++ D+++ W++ ++ + + ++V
Sbjct: 339 MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 396
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 397 DFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 453
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L D +
Sbjct: 454 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGT 509
Query: 1150 LC 1155
LC
Sbjct: 510 LC 511
>ref|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus].
Length = 478
Score = 70.1 bits (170), Expect = 4e-12
Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 11/262 (4%)
Frame = +1
Query: 385 PVADFTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLK 558
PV + H A++++V + N + + TGS D + ++ ++ + V H IT ++
Sbjct: 8 PVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQ 67
Query: 559 F--YGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
F GN L S + D I +W K KAH V + G+ S DK++
Sbjct: 68 FSPLGNL-LASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSI 126
Query: 733 RTWNLVEGRSAFIKNIKQNAHIV---EWSPRGEKYVVVILNKIDIYRLDTASVSGTITNA 903
+ WN+ R F+ ++ ++ H V ++SP G V +K I DT + +
Sbjct: 127 KVWNMY--RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKT-IKIWDTTNKQCVNNFS 183
Query: 904 KRVSSVTFLS----ESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHH 1071
V F++ + +A AG + V+ +D L ++ H V V SF P +
Sbjct: 184 DFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCV-SFH-PSGN 241
Query: 1072 VIVTASSDGFIKMWKLEEDKKV 1137
++TASSDG +K+ L E + +
Sbjct: 242 YLITASSDGTLKILDLLEGRLI 263
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Frame = +1
Query: 388 VADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMK--KKVDHGALVHHNGTITCLKF 561
V +F+ A+ A N + + D T+ I+D++ K + H + H+G + C+ F
Sbjct: 179 VNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSF 236
Query: 562 Y-GNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRT 738
+ +LI+ + DG + + D + + +++ H G V +S G+L S G D +
Sbjct: 237 HPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQVLL 296
Query: 739 WNL----VEGRSAFIKNIKQ-----NAHIVEWSPR------GEKYVVVILNKIDIYRLDT 873
W + + +N+K+ H+++ PR G V I K+D+ L T
Sbjct: 297 WRTNFDELNYKDVSKRNLKRLHFDSPPHLLDIYPRTPHPHEGRIDTVEINPKLDVTDLQT 356
Query: 874 AS 879
++
Sbjct: 357 ST 358
>ref|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partial [Bos taurus].
Length = 371
Score = 70.1 bits (170), Expect = 4e-12
Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 11/262 (4%)
Frame = +1
Query: 385 PVADFTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLK 558
PV + H A++++V + N + + TGS D + ++ ++ + V H IT ++
Sbjct: 8 PVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQ 67
Query: 559 F--YGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
F GN L S + D I +W K KAH V + G+ S DK++
Sbjct: 68 FSPLGNL-LASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSI 126
Query: 733 RTWNLVEGRSAFIKNIKQNAHIV---EWSPRGEKYVVVILNKIDIYRLDTASVSGTITNA 903
+ WN+ R F+ ++ ++ H V ++SP G V +K I DT + +
Sbjct: 127 KVWNMY--RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKT-IKIWDTTNKQCVNNFS 183
Query: 904 KRVSSVTFLS----ESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHH 1071
V F++ + +A AG + V+ +D L ++ H V V SF P +
Sbjct: 184 DFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCV-SFH-PSGN 241
Query: 1072 VIVTASSDGFIKMWKLEEDKKV 1137
++TASSDG +K+ L E + +
Sbjct: 242 YLITASSDGTLKILDLLEGRLI 263
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Frame = +1
Query: 388 VADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMK--KKVDHGALVHHNGTITCLKF 561
V +F+ A+ A N + + D T+ I+D++ K + H + H+G + C+ F
Sbjct: 179 VNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQV--HSGGVNCVSF 236
Query: 562 Y-GNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRT 738
+ +LI+ + DG + + D + + +++ H G V +S G+L S G D +
Sbjct: 237 HPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQVLL 296
Query: 739 WNL----VEGRSAFIKNIKQ-----NAHIVEWSPR------GEKYVVVILNKIDIYRLDT 873
W + + +N+K+ H+++ PR G V I K+D+ L T
Sbjct: 297 WRTNFDELNYKDVSKRNLKRLHFDSPPHLLDIYPRTPHPHEGRIDTVEINPKLDVTDLQT 356
Query: 874 AS 879
++
Sbjct: 357 ST 358
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 68.9 bits (167), Expect = 9e-12
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVA---DFTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMKKKVD 513
SGS + R W P AHTA++ +V + + VT S D+T+ ++ ++
Sbjct: 78 SGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKF 137
Query: 514 HGALVHHNGTITCLKFYGN-RHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHP 690
+L H + C KF + R ++S ++D + +WD EC+ S H G VT++ HP
Sbjct: 138 LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHP 197
Query: 691 SGKLALSVGTDKTLRTWNL 747
SG + G D T++ W++
Sbjct: 198 SGTCIAAAGMDNTVKVWDV 216
Score = 67.4 bits (163), Expect = 3e-11
Identities = 59/253 (23%), Positives = 114/253 (45%), Gaps = 8/253 (3%)
Frame = +1
Query: 397 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRH 576
F H + ++N++ + +GS D + ++ MK + H +TC+ F + H
Sbjct: 15 FKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGH 74
Query: 577 LI-SGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVE 753
L+ SG+ D + +W +AH V + G+ ++ DKT++ W+
Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWS--T 132
Query: 754 GRSAFIKNIKQNAHIV---EWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVT 924
R F+ ++ Q+ + V ++SP G + +V + + D S + + VT
Sbjct: 133 HRQKFLFSLSQHINWVRCAKFSPDG-RLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVT 191
Query: 925 FL----SESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASS 1092
++ S + +A AG + V+ +D + L ++ H V + SF P + +VTASS
Sbjct: 192 YVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAV-NALSFH-PSGNYLVTASS 249
Query: 1093 DGFIKMWKLEEDK 1131
D +K+ L E +
Sbjct: 250 DSTLKILDLMEGR 262
Score = 65.9 bits (159), Expect = 7e-11
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Frame = +1
Query: 364 SHERKWTPVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGT 543
+H +K+ + + H + + + + R +V+ S D+T+ ++D + + H G
Sbjct: 132 THRQKF--LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGF 189
Query: 544 ITCLKFYGNRHLISGAE-DGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGT 720
+T + F+ + I+ A D + VWD + L+ + H V LS HPSG ++ +
Sbjct: 190 VTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASS 249
Query: 721 DKTLRTWNLVEGRSAFIKNIKQN-AHIVEWSPRGEKY 828
D TL+ +L+EGR + + Q A V +S GE +
Sbjct: 250 DSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYF 286
Score = 55.8 bits (133), Expect = 8e-08
Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 5/219 (2%)
Frame = +1
Query: 532 HNGTITCLKFYGN-RHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H +T + F N + L SG+ D + VW K HK VT ++ PSG L
Sbjct: 18 HRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLLA 77
Query: 709 SVGTDKTLRTW-NLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILNK-IDIYRLDTASV 882
S DKT+R W V+G S + V + G+ +V +K + ++
Sbjct: 78 SGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKF 137
Query: 883 SGTIT-NAKRVSSVTFLSESVLAV-AGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFE 1056
+++ + V F + L V A D++ V+ +D S C+ + H V V F
Sbjct: 138 LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYV-DFH 196
Query: 1057 TPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCEINTNA 1173
P I A D +K+W + + + L NA
Sbjct: 197 -PSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNA 234
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 68.6 bits (166), Expect = 1e-11
Identities = 65/276 (23%), Positives = 125/276 (45%), Gaps = 16/276 (5%)
Frame = +1
Query: 343 PEPETSGSHERKWTPVAD-----FTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMK 501
P P +S + + K TPV FT HT ++S+V + N ++ + S D+ I I+
Sbjct: 17 PTPSSSAT-QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 75
Query: 502 KKVDHGALVHHNGTITCLKFYGNRHL-ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFL 678
+ H I+ + + + +L +S ++D + +WD +CLK++K H +V
Sbjct: 76 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 135
Query: 679 SIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILNKID- 855
+ +P L +S D+++R W++ G+ +K + ++ V +++ + D
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 856 IYRL-DTASVSGTIT----NAKRVSSVTFLSESVLAVAGD-EEVVRFFDCDSLTCLSEFK 1017
+ R+ DTAS T + VS V F +A + ++ +D CL +
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 1018 AHENRVKDVF-SFETPEHHVIVTASSDGFIKMWKLE 1122
H+N +F +F IV+ S D + +W L+
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Score = 49.3 bits (116), Expect = 7e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Frame = +1
Query: 442 NSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCL----KFYGNRHLISGAEDGLIC 609
N ++++ + D T+ ++D K H C+ G + ++SG+ED L+
Sbjct: 225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 610 VWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVG--TDKTLRTW 741
+W+ + E ++ ++ H V + HP+ + S DKT++ W
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,657,037
Number of extensions: 1337373
Number of successful extensions: 5589
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 5216
Number of HSP's successfully gapped: 100
Length of query: 414
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,207,134
Effective search space: 4390004406
Effective search space used: 4390004406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013667
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013667
(1243 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535884.1| PREDICTED: similar to PAK1 interacting protein ... 595 e-170
Alignment gi|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 1... 76 8e-14
Alignment gi|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain pr... 76 8e-14
Alignment gi|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain pr... 76 8e-14
Alignment gi|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain pr... 76 8e-14
Alignment gi|XP_866580.1| PREDICTED: similar to F-box and WD-40 domain pr... 76 8e-14
Alignment gi|XP_866566.1| PREDICTED: similar to F-box and WD-40 domain pr... 76 8e-14
Alignment gi|XP_866552.1| PREDICTED: similar to F-box/WD-repeat protein 1... 76 8e-14
Alignment gi|XP_866538.1| PREDICTED: similar to F-box and WD-40 domain pr... 76 8e-14
Alignment gi|XP_539737.2| PREDICTED: similar to Apoptotic protease activa... 74 3e-13
>ref|XP_535884.1| PREDICTED: similar to PAK1 interacting protein 1 [Canis familiaris].
Length = 391
Score = 595 bits (1535), Expect = e-170
Identities = 285/319 (89%), Positives = 304/319 (95%), Gaps = 1/319 (0%)
Frame = +1
Query: 289 MEVVAGCYEQVLFGFAVHPEPETSGSH-ERKWTPVADFTHHAHTASLSAVAVNSRFVVTG 465
ME+VAGCYEQVLFGFA+ EP+ G H E+KWT VADFTHHAHTASLSAVAVNSRFVVTG
Sbjct: 1 MELVAGCYEQVLFGFAIRREPDAGGEHREQKWTAVADFTHHAHTASLSAVAVNSRFVVTG 60
Query: 466 SKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKS 645
SKDETIHIYDMKKK+DHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKS
Sbjct: 61 SKDETIHIYDMKKKIDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKS 120
Query: 646 IKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEK 825
IKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGE+
Sbjct: 121 IKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGER 180
Query: 826 YVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCL 1005
Y+VVILNKI++Y+LDTASVSGTITN KR+SSVTFLSESVLAVAGDEEVVRFFDCDSLTC+
Sbjct: 181 YIVVILNKINVYQLDTASVSGTITNEKRISSVTFLSESVLAVAGDEEVVRFFDCDSLTCV 240
Query: 1006 SEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCEINTNARLTC 1185
EFKAHENRVKD+FSFE PEHH+IVTASSDGFIKMWKL++DKKV PSLLCE+ TNARLTC
Sbjct: 241 CEFKAHENRVKDIFSFEDPEHHIIVTASSDGFIKMWKLKQDKKVPPSLLCEVKTNARLTC 300
Query: 1186 LGVWLGNVTDTKESMPPAA 1242
LGVWL VTDT+ES+P AA
Sbjct: 301 LGVWLDRVTDTQESLPSAA 319
>ref|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat
protein 1B) (F-box and WD-repeats protein beta-TrCP2)
isoform 8 [Canis familiaris].
Length = 542
Score = 75.9 bits (185), Expect = 8e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 253 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 311
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 312 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 369
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 370 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 426
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 427 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 482
Query: 1150 LC 1155
LC
Sbjct: 483 LC 484
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 398 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 456
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 457 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 514
Query: 733 RTWNLV 750
W+ +
Sbjct: 515 LIWDFL 520
>ref|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2
[Canis familiaris].
Length = 563
Score = 75.9 bits (185), Expect = 8e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 274 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 332
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 333 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 390
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 391 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 447
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 448 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 503
Query: 1150 LC 1155
LC
Sbjct: 504 LC 505
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 419 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 477
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 478 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 535
Query: 733 RTWNLV 750
W+ +
Sbjct: 536 LIWDFL 541
>ref|XP_866601.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 7
[Canis familiaris].
Length = 531
Score = 75.9 bits (185), Expect = 8e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 242 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 300
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 301 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 358
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 359 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 415
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 416 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 471
Query: 1150 LC 1155
LC
Sbjct: 472 LC 473
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 387 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 445
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 446 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 503
Query: 733 RTWNLV 750
W+ +
Sbjct: 504 LIWDFL 509
>ref|XP_536431.2| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform B
isoform 1 [Canis familiaris].
Length = 529
Score = 75.9 bits (185), Expect = 8e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 240 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 298
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 299 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 356
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 357 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 413
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 414 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 469
Query: 1150 LC 1155
LC
Sbjct: 470 LC 471
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 385 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 443
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 444 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 501
Query: 733 RTWNLV 750
W+ +
Sbjct: 502 LIWDFL 507
>ref|XP_866580.1| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform B
isoform 6 [Canis familiaris].
Length = 510
Score = 75.9 bits (185), Expect = 8e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 221 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 279
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 280 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 337
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 338 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 394
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 395 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 450
Query: 1150 LC 1155
LC
Sbjct: 451 LC 452
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 366 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 424
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 425 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 482
Query: 733 RTWNLV 750
W+ +
Sbjct: 483 LIWDFL 488
>ref|XP_866566.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 5
[Canis familiaris].
Length = 485
Score = 75.9 bits (185), Expect = 8e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 196 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 254
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 255 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 312
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 313 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 369
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 370 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 425
Query: 1150 LC 1155
LC
Sbjct: 426 LC 427
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 341 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 399
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 400 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 457
Query: 733 RTWNLV 750
W+ +
Sbjct: 458 LIWDFL 463
>ref|XP_866552.1| PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat
protein 1B) (F-box and WD-repeats protein beta-TrCP2)
isoform 4 [Canis familiaris].
Length = 444
Score = 75.9 bits (185), Expect = 8e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 155 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 213
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 214 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 271
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 272 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 328
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 329 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 384
Query: 1150 LC 1155
LC
Sbjct: 385 LC 386
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 300 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 358
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 359 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 416
Query: 733 RTWNLV 750
W+ +
Sbjct: 417 LIWDFL 422
>ref|XP_866538.1| PREDICTED: similar to F-box and WD-40 domain protein 1B isoform A
isoform 3 [Canis familiaris].
Length = 508
Score = 75.9 bits (185), Expect = 8e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 219 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 277
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 278 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 335
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 336 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 392
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 393 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 448
Query: 1150 LC 1155
LC
Sbjct: 449 LC 450
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 364 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 422
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 423 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 480
Query: 733 RTWNLV 750
W+ +
Sbjct: 481 LIWDFL 486
>ref|XP_539737.2| PREDICTED: similar to Apoptotic protease activating factor 1 (Apaf-1)
isoform 1 [Canis familiaris].
Length = 1250
Score = 73.9 bits (180), Expect = 3e-13
Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 24/268 (8%)
Frame = +1
Query: 406 HAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVH----HNGTITCLKFYGNR 573
H A + + RF+ T S D+ + I++ G LVH H+ + C F N
Sbjct: 657 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT----GGLVHVYDEHSEQVNCCHFTNNS 712
Query: 574 H---LISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWN 744
H L + + D + +WD + EC ++ H V P KL S D TL+ W+
Sbjct: 713 HYLLLATASSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 772
Query: 745 LVEGRSAFIKNIKQ----------NAHIV----EWSPRGEKYVVVILNKIDIYRLDTASV 882
+ N+KQ + ++ WS G + +V NKI ++ + T +
Sbjct: 773 VKSANERKSINVKQFFLNSEEPQEDMEVIVKCCSWSADGTRIMVAAKNKIFLFDIHTGGL 832
Query: 883 SGTITNA--KRVSSVTFLSESVLA-VAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSF 1053
I + F ++ LA VA + V ++ DS +++ + H + V V
Sbjct: 833 LAEIHTGHHSTIQYCDFSPQNHLAVVALSQCCVELWNMDSCLKVADCRGHLSWVHCVMF- 891
Query: 1054 ETPEHHVIVTASSDGFIKMWKLEEDKKV 1137
+P+ +T+S D I++W E KKV
Sbjct: 892 -SPDGSSFLTSSDDQTIRLW---ETKKV 915
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,707,724
Number of extensions: 1373310
Number of successful extensions: 6080
Number of sequences better than 1.0e-05: 84
Number of HSP's gapped: 5576
Number of HSP's successfully gapped: 154
Length of query: 414
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 309
Effective length of database: 15,374,224
Effective search space: 4750635216
Effective search space used: 4750635216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013667
(1243 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926235.1| PREDICTED: p21-activated protein kinase-inte... 645 0.0
Alignment gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei... 74 2e-13
Alignment gi|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protei... 74 2e-13
Alignment gi|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protei... 74 2e-13
Alignment gi|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protei... 72 8e-13
Alignment gi|XP_003126748.2| PREDICTED: apoptotic protease-activating fac... 70 2e-12
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 69 4e-12
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 67 2e-11
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 67 2e-11
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 64 2e-10
>ref|XP_001926235.1| PREDICTED: p21-activated protein kinase-interacting protein 1 [Sus
scrofa].
Length = 395
Score = 645 bits (1665), Expect = 0.0
Identities = 314/318 (98%), Positives = 316/318 (99%)
Frame = +1
Query: 289 MEVVAGCYEQVLFGFAVHPEPETSGSHERKWTPVADFTHHAHTASLSAVAVNSRFVVTGS 468
MEVVAGCYEQVLFGFAVHPEPETSGSHERKWTPVADFTHHAHTASLSAVAVNSRFVVTGS
Sbjct: 1 MEVVAGCYEQVLFGFAVHPEPETSGSHERKWTPVADFTHHAHTASLSAVAVNSRFVVTGS 60
Query: 469 KDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSI 648
KDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSI
Sbjct: 61 KDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSI 120
Query: 649 KAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKY 828
KAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKY
Sbjct: 121 KAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKY 180
Query: 829 VVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLS 1008
VVV+LNKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLS
Sbjct: 181 VVVVLNKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLS 240
Query: 1009 EFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCEINTNARLTCL 1188
EFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCE+NTNARLTCL
Sbjct: 241 EFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCEVNTNARLTCL 300
Query: 1189 GVWLGNVTDTKESMPPAA 1242
GVWL VTDTKESMPPAA
Sbjct: 301 GVWLDTVTDTKESMPPAA 318
>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
scrofa].
Length = 589
Score = 73.6 bits (179), Expect = 2e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 338 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 396
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 397 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 450
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 451 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 474
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 475 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 533
Query: 1120 E 1122
+
Sbjct: 534 K 534
Score = 52.4 bits (124), Expect = 5e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 398 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 457
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 458 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 516
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 517 N--FVITSSDDGTVKLWDLKTGE--FIRNL 542
>ref|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 2 [Sus
scrofa].
Length = 705
Score = 73.6 bits (179), Expect = 2e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 454 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 512
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 513 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 566
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 567 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 590
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 591 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 649
Query: 1120 E 1122
+
Sbjct: 650 K 650
Score = 52.4 bits (124), Expect = 5e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 514 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 573
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 574 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 632
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 633 N--FVITSSDDGTVKLWDLKTGE--FIRNL 658
>ref|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 1 [Sus
scrofa].
Length = 627
Score = 73.6 bits (179), Expect = 2e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 376 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 434
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 435 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 488
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 489 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 512
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 513 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 571
Query: 1120 E 1122
+
Sbjct: 572 K 572
Score = 52.4 bits (124), Expect = 5e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 436 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 495
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 496 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 554
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 555 N--FVITSSDDGTVKLWDLKTGE--FIRNL 580
>ref|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protein 1A, partial [Sus
scrofa].
Length = 497
Score = 71.6 bits (174), Expect = 8e-13
Identities = 52/228 (22%), Positives = 103/228 (45%), Gaps = 6/228 (2%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+V+G +D TI I+D L H G++ CL+ Y R +I+G+ D + VWD E
Sbjct: 208 IVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQ-YDERVIITGSSDSTVRVWDVNTGE 266
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + + + ++ D+++ W++ ++ + + ++V
Sbjct: 267 MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 324
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 325 DFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 381
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+D + CL + HE V+ + F+ IV+ + DG IK+W L
Sbjct: 382 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDL 425
>ref|XP_003126748.2| PREDICTED: apoptotic protease-activating factor 1 isoform 3, partial
[Sus scrofa].
Length = 1012
Score = 70.5 bits (171), Expect = 2e-12
Identities = 60/265 (22%), Positives = 107/265 (40%), Gaps = 21/265 (7%)
Frame = +1
Query: 406 HAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRH--- 576
H A + + RF+ T S D+ + I++ + H+ + C F N +
Sbjct: 419 HEDEVLCCAFSADDRFIATCSVDKKVKIWNSVTGELVQSYDEHSEQVNCCHFTNNSNHLL 478
Query: 577 LISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEG 756
L +G+ D + +WD + EC ++ H V+ P KL S D TL+ W++
Sbjct: 479 LATGSSDYFLKLWDLNQKECRNTMFGHTNSVSHCRFSPDDKLLASCSADGTLKLWDVKSA 538
Query: 757 RSAFIKNIKQ--------------NAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTI 894
N+KQ WS G VV NK+ ++ + T + I
Sbjct: 539 NERKSINVKQFFLNSEESQEDMEVMVKCCSWSADGASLVVAAKNKVLLFNIHTGGLLAEI 598
Query: 895 TNAKRVSSVTFL----SESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETP 1062
S++ + S + VA + V ++ DS +++ + H + V + +P
Sbjct: 599 HTGHH-STIQYCDFSPSNHLAVVALSQYCVELWNMDSCLKVADCRGHLSWVH--CAMFSP 655
Query: 1063 EHHVIVTASSDGFIKMWKLEEDKKV 1137
+ +T+S D I++W E KKV
Sbjct: 656 DGSSFLTSSDDETIRLW---ETKKV 677
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 69.3 bits (168), Expect = 4e-12
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVA---DFTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMKKKVD 513
SGS + R W P AHTA++ +V + + VT S D+TI ++ ++
Sbjct: 78 SGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTIKVWSTHRQKF 137
Query: 514 HGALVHHNGTITCLKFYGN-RHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHP 690
+L H + C KF + R ++S ++D + +WD EC+ S H G VT++ HP
Sbjct: 138 LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHP 197
Query: 691 SGKLALSVGTDKTLRTWNL 747
SG + G D T++ W++
Sbjct: 198 SGTCVAAAGMDNTVKVWDV 216
Score = 65.5 bits (158), Expect = 6e-11
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Frame = +1
Query: 364 SHERKWTPVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGT 543
+H +K+ + + H + + + + R +V+ S D+T+ ++D + + H G
Sbjct: 132 THRQKF--LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGF 189
Query: 544 ITCLKFYGNRHLISGAE-DGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGT 720
+T + F+ + ++ A D + VWD + L+ + H V LS HPSG ++ +
Sbjct: 190 VTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASS 249
Query: 721 DKTLRTWNLVEGRSAFIKNIKQN-AHIVEWSPRGEKY 828
D TL+ +L+EGR + + Q A V +S GE +
Sbjct: 250 DSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYF 286
Score = 65.1 bits (157), Expect = 8e-11
Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 8/253 (3%)
Frame = +1
Query: 397 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRH 576
F H + + N + + +GS D + ++ MK + H +TC+ F + H
Sbjct: 15 FKGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGH 74
Query: 577 LI-SGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVE 753
L+ SG+ D + +W +AH V + G+ ++ DKT++ W+
Sbjct: 75 LLASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTIKVWS--T 132
Query: 754 GRSAFIKNIKQNAHIV---EWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVT 924
R F+ ++ Q+ + V ++SP G + +V + + D S + + VT
Sbjct: 133 HRQKFLFSLSQHINWVRCAKFSPDG-RLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVT 191
Query: 925 FL----SESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASS 1092
++ S + +A AG + V+ +D + L ++ H V + SF P + +VTASS
Sbjct: 192 YVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAV-NALSFH-PSGNYLVTASS 249
Query: 1093 DGFIKMWKLEEDK 1131
D +K+ L E +
Sbjct: 250 DSTLKILDLMEGR 262
Score = 60.1 bits (144), Expect = 3e-09
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 5/219 (2%)
Frame = +1
Query: 532 HNGTITCLKFYGN-RHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H +TC+ F N + L SG+ D + VW K HK VT ++ PSG L
Sbjct: 18 HRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLA 77
Query: 709 SVGTDKTLRTW-NLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILNK-IDIYRLDTASV 882
S DKT+R W ++G S + V + G+ +V +K I ++
Sbjct: 78 SGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTIKVWSTHRQKF 137
Query: 883 SGTIT-NAKRVSSVTFLSESVLAV-AGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFE 1056
+++ + V F + L V A D++ V+ +D S C+ + H V V F
Sbjct: 138 LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYV-DFH 196
Query: 1057 TPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCEINTNA 1173
P + A D +K+W + + + L NA
Sbjct: 197 -PSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNA 234
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 67.0 bits (162), Expect = 2e-11
Identities = 59/253 (23%), Positives = 117/253 (46%), Gaps = 11/253 (4%)
Frame = +1
Query: 397 FTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGN 570
FT HT ++S+V + N ++ + S D+ I I+ AL H+ I+ + + +
Sbjct: 35 FTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKALKGHSLEISDVAWSSD 94
Query: 571 R-HLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNL 747
L+S ++D + +WD + +CLK++K H +V + +P L +S D++++ W +
Sbjct: 95 SGRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDESVKIWEV 154
Query: 748 VEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILNKID-IYRL-DTASVSGTIT----NAKR 909
GR +K + ++ V K +++ D + R+ D AS T +
Sbjct: 155 KTGRC--LKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVDDDNPP 212
Query: 910 VSSVTFL-SESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVF-SFETPEHHVIVT 1083
+S V F + + +A + ++ +D CL + H+N +F +F IV+
Sbjct: 213 ISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTSGKWIVS 272
Query: 1084 ASSDGFIKMWKLE 1122
S D + +W L+
Sbjct: 273 GSEDNLVYIWNLQ 285
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 67.0 bits (162), Expect = 2e-11
Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 16/276 (5%)
Frame = +1
Query: 343 PEPETSGSHERKWTPVAD-----FTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMK 501
P P + + + K TPV FT HT ++S+V + N ++ + S D+ I I+
Sbjct: 17 PAPSAAAT-QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 75
Query: 502 KKVDHGALVHHNGTITCLKFYGNRHL-ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFL 678
+ H I+ + + + +L +S ++D + +WD +CLK++K H +V
Sbjct: 76 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 135
Query: 679 SIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILNKID- 855
+ +P L +S D+++R W++ G+ +K + ++ V +++ + D
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 856 IYRL-DTASVSGTIT----NAKRVSSVTFLSESVLAVAGD-EEVVRFFDCDSLTCLSEFK 1017
+ R+ DTAS T + VS V F +A + ++ +D CL +
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 1018 AHENRVKDVF-SFETPEHHVIVTASSDGFIKMWKLE 1122
H+N +F +F IV+ S D + +W L+
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Score = 49.3 bits (116), Expect = 4e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Frame = +1
Query: 442 NSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCL----KFYGNRHLISGAEDGLIC 609
N ++++ + D T+ ++D K H C+ G + ++SG+ED L+
Sbjct: 225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 610 VWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVG--TDKTLRTW 741
+W+ + E ++ ++ H V + HP+ + S DKT++ W
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 63.9 bits (154), Expect = 2e-10
Identities = 30/98 (30%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +1
Query: 451 FVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFY-GNRHLISGAEDGLICVWDAKK 627
F+++GS+D+TI ++D+ + LV H+ + + F+ G + ++S A+D + VWD K
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 628 WECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTW 741
C+K++ AH+ VT L H + ++ D+T++ W
Sbjct: 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 59.3 bits (142), Expect = 4e-09
Identities = 58/268 (21%), Positives = 114/268 (42%), Gaps = 29/268 (10%)
Frame = +1
Query: 400 THHAHTASLSAVAVN--SRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNR 573
T HT S+ ++ + + + + S D TI ++D + + H+ ++ + N
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 574 -HLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLV 750
H++S A D I +W+ + C+K+ H+ V + + G L S D+T+R W V
Sbjct: 205 DHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW--V 262
Query: 751 EGRSAFIKNIKQNAHIVE---WSP----------------RGEKYVVVILN-----KIDI 858
++++ H+VE W+P + K +L+ I +
Sbjct: 263 VATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 859 YRLDTASVSGTITNAKR-VSSVTFLSESVLAVA-GDEEVVRFFDCDSLTCLSEFKAHENR 1032
+ + T T+ V V F S ++ D++ +R +D + C+ AHE+
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF 382
Query: 1033 VKDVFSFETPEHHVIVTASSDGFIKMWK 1116
V + +T + +VT S D +K+W+
Sbjct: 383 VTSLDFHKTAPY--VVTGSVDQTVKVWE 408
Score = 55.5 bits (132), Expect = 6e-08
Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Frame = +1
Query: 385 PVADFTHHAHTASLSAVAVNSRF--VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLK 558
P + H + ++ V + F +V+ S+D TI ++D + L H ++ +
Sbjct: 98 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 157
Query: 559 F-YGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLR 735
F + + L S + D I +WD + +EC++++ H +V+ ++I P+G +S DKT++
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIK 217
Query: 736 TWNLVEG 756
W + G
Sbjct: 218 MWEVQTG 224
Score = 53.5 bits (127), Expect = 2e-07
Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 21/159 (13%)
Frame = +1
Query: 388 VADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYG 567
V FT H + + + + S D+T+ ++ + K L H + C+ +
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286
Query: 568 NRH---------------------LISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSI 684
L+SG+ D I +WD CL ++ H V +
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346
Query: 685 HPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIV 801
H GK LS DKTLR W+ R +K + + H V
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNKRC--MKTLNAHEHFV 383
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,303,386
Number of extensions: 856361
Number of successful extensions: 3738
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 3488
Number of HSP's successfully gapped: 81
Length of query: 414
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,829,335
Effective search space: 2763581855
Effective search space used: 2763581855
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013667
(1243 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080826.2| p21-activated protein kinase-interacting protei... 521 e-148
Alignment gi|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musc... 76 5e-14
Alignment gi|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 ... 74 3e-13
Alignment gi|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform... 74 3e-13
Alignment gi|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform... 74 3e-13
Alignment gi|NP_001036023.1| apoptotic protease-activating factor 1 [Mus ... 72 7e-13
Alignment gi|NP_033814.2| apoptotic protease-activating factor 1 [Mus mus... 72 7e-13
Alignment gi|NP_001032847.2| F-box/WD repeat-containing protein 1A isofor... 72 9e-13
Alignment gi|NP_033901.1| F-box/WD repeat-containing protein 1A isoform b... 72 9e-13
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 70 3e-12
>ref|NP_080826.2| p21-activated protein kinase-interacting protein 1 [Mus musculus].
Length = 382
Score = 521 bits (1341), Expect = e-148
Identities = 246/318 (77%), Positives = 278/318 (87%)
Frame = +1
Query: 289 MEVVAGCYEQVLFGFAVHPEPETSGSHERKWTPVADFTHHAHTASLSAVAVNSRFVVTGS 468
ME+VAG YEQVLFGF V P SG H+ WTPVADFTHH+HTASLS +A NSR+VV+GS
Sbjct: 1 MELVAGSYEQVLFGFTVQRGPAKSG-HQETWTPVADFTHHSHTASLSVLASNSRYVVSGS 59
Query: 469 KDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSI 648
KDETIHIYDMK+KV+HGALVHH GT+TCLKF+GN+HLISGAEDG IC+WD K+W+CLK+
Sbjct: 60 KDETIHIYDMKRKVEHGALVHHAGTVTCLKFHGNQHLISGAEDGHICIWDVKRWKCLKTF 119
Query: 649 KAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKY 828
KAH+GHVTFLSIHPSGKLALSVGTDKTLRTWNL+EGRSAFIKNIK+NAHIVEWSP G KY
Sbjct: 120 KAHRGHVTFLSIHPSGKLALSVGTDKTLRTWNLIEGRSAFIKNIKENAHIVEWSPSGGKY 179
Query: 829 VVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLS 1008
+VV+ NK+D+YRL TASVSGTITN KR+SSVTFLS+SVLAVAGDEEVVR FDCDSL CL
Sbjct: 180 IVVVQNKVDVYRLGTASVSGTITNGKRISSVTFLSDSVLAVAGDEEVVRIFDCDSLECLC 239
Query: 1009 EFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCEINTNARLTCL 1188
EF+AHENRVKD+ SFE P+HHV+VTAS+DGFIKMW L +DKKV PSLLCE T ARLTCL
Sbjct: 240 EFRAHENRVKDMVSFEVPDHHVLVTASNDGFIKMWTLPQDKKVPPSLLCEAKTGARLTCL 299
Query: 1189 GVWLGNVTDTKESMPPAA 1242
VWL + S+PPAA
Sbjct: 300 TVWLDRAANGMASLPPAA 317
>ref|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musculus].
Length = 563
Score = 76.3 bits (186), Expect = 5e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 274 IISGLRDNSIKIWDKSSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 332
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 333 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 390
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 391 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 447
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 448 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 503
Query: 1150 LC 1155
LC
Sbjct: 504 LC 505
Score = 54.7 bits (130), Expect = 1e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 419 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 477
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 478 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 535
Query: 733 RTWNLV 750
W+ +
Sbjct: 536 LIWDFL 541
>ref|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].
Length = 629
Score = 73.6 bits (179), Expect = 3e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 378 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 436
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 437 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 490
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 491 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 514
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 515 ILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 573
Query: 1120 E 1122
+
Sbjct: 574 K 574
Score = 70.9 bits (172), Expect = 2e-12
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Frame = +1
Query: 529 HHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H + ITCL+F GNR ++SG++D + VW A +CL+++ H G V S + +
Sbjct: 301 HDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIII 357
Query: 709 SVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILN--KIDIYRLDTASV 882
S TD+TL+ WN G I + + V EK VV + ++ ++T
Sbjct: 358 SGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 415
Query: 883 SGTIT-NAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFET 1059
+ + V V + V++ A D +V+ +D ++ TCL + H NR V+S +
Sbjct: 416 LHVLMGHVAAVRCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNR---VYSLQF 471
Query: 1060 PEHHVIVTASSDGFIKMWKLE 1122
HV V+ S D I++W +E
Sbjct: 472 DGIHV-VSGSLDTSIRVWDVE 491
Score = 52.4 bits (124), Expect = 7e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 438 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 497
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 498 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNK 556
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 557 N--FVITSSDDGTVKLWDLKTGE--FIRNL 582
>ref|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 73.6 bits (179), Expect = 3e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 459 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 517
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 518 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 571
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 572 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 595
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 596 ILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 654
Query: 1120 E 1122
+
Sbjct: 655 K 655
Score = 70.9 bits (172), Expect = 2e-12
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Frame = +1
Query: 529 HHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H + ITCL+F GNR ++SG++D + VW A +CL+++ H G V S + +
Sbjct: 382 HDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIII 438
Query: 709 SVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILN--KIDIYRLDTASV 882
S TD+TL+ WN G I + + V EK VV + ++ ++T
Sbjct: 439 SGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 496
Query: 883 SGTIT-NAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFET 1059
+ + V V + V++ A D +V+ +D ++ TCL + H NR V+S +
Sbjct: 497 LHVLMGHVAAVRCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNR---VYSLQF 552
Query: 1060 PEHHVIVTASSDGFIKMWKLE 1122
HV V+ S D I++W +E
Sbjct: 553 DGIHV-VSGSLDTSIRVWDVE 572
Score = 52.4 bits (124), Expect = 7e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 519 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 578
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 579 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNK 637
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 638 N--FVITSSDDGTVKLWDLKTGE--FIRNL 663
>ref|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 73.6 bits (179), Expect = 3e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 459 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 517
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 518 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 571
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 572 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 595
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 596 ILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 654
Query: 1120 E 1122
+
Sbjct: 655 K 655
Score = 70.9 bits (172), Expect = 2e-12
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Frame = +1
Query: 529 HHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H + ITCL+F GNR ++SG++D + VW A +CL+++ H G V S + +
Sbjct: 382 HDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIII 438
Query: 709 SVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILN--KIDIYRLDTASV 882
S TD+TL+ WN G I + + V EK VV + ++ ++T
Sbjct: 439 SGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 496
Query: 883 SGTIT-NAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFET 1059
+ + V V + V++ A D +V+ +D ++ TCL + H NR V+S +
Sbjct: 497 LHVLMGHVAAVRCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNR---VYSLQF 552
Query: 1060 PEHHVIVTASSDGFIKMWKLE 1122
HV V+ S D I++W +E
Sbjct: 553 DGIHV-VSGSLDTSIRVWDVE 572
Score = 52.4 bits (124), Expect = 7e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 519 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 578
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 579 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNK 637
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 638 N--FVITSSDDGTVKLWDLKTGE--FIRNL 663
>ref|NP_001036023.1| apoptotic protease-activating factor 1 [Mus musculus].
Length = 1249
Score = 72.4 bits (176), Expect = 7e-13
Identities = 63/273 (23%), Positives = 116/273 (42%), Gaps = 25/273 (9%)
Frame = +1
Query: 394 DFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVH----HNGTITCLKF 561
D H A + + ++ T S D+ + I+D G LVH H+ + C F
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT----GKLVHTYDEHSEQVNCCHF 707
Query: 562 YG-NRHLI--SGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+ HL+ +G+ D + +WD + EC ++ H V P +L S D TL
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 733 RTWNLVEGRSAFIKNIK----------QNAHIV----EWSPRGEKYVVVILNKIDIYRLD 870
R W++ N+K ++ ++ WS G+K +V NK+ ++ +
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827
Query: 871 TASVSGTITNAKRVSSVTFLS----ESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVK 1038
T+ + I S++ + + + +A + V ++ DS +++ + H + V
Sbjct: 828 TSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 1039 DVFSFETPEHHVIVTASSDGFIKMWKLEEDKKV 1137
V +P+ +TAS D I++W E KKV
Sbjct: 887 GVMF--SPDGSSFLTASDDQTIRVW---ETKKV 914
>ref|NP_033814.2| apoptotic protease-activating factor 1 [Mus musculus].
Length = 1249
Score = 72.4 bits (176), Expect = 7e-13
Identities = 63/273 (23%), Positives = 116/273 (42%), Gaps = 25/273 (9%)
Frame = +1
Query: 394 DFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVH----HNGTITCLKF 561
D H A + + ++ T S D+ + I+D G LVH H+ + C F
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT----GKLVHTYDEHSEQVNCCHF 707
Query: 562 YG-NRHLI--SGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+ HL+ +G+ D + +WD + EC ++ H V P +L S D TL
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 733 RTWNLVEGRSAFIKNIK----------QNAHIV----EWSPRGEKYVVVILNKIDIYRLD 870
R W++ N+K ++ ++ WS G+K +V NK+ ++ +
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827
Query: 871 TASVSGTITNAKRVSSVTFLS----ESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVK 1038
T+ + I S++ + + + +A + V ++ DS +++ + H + V
Sbjct: 828 TSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 1039 DVFSFETPEHHVIVTASSDGFIKMWKLEEDKKV 1137
V +P+ +TAS D I++W E KKV
Sbjct: 887 GVMF--SPDGSSFLTASDDQTIRVW---ETKKV 914
>ref|NP_001032847.2| F-box/WD repeat-containing protein 1A isoform a [Mus musculus].
Length = 605
Score = 72.0 bits (175), Expect = 9e-13
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+V+G +D TI I+D L H G++ CL+ Y R +I+G+ D + VWD E
Sbjct: 316 IVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQ-YDERVIITGSSDSTVRVWDVNAGE 374
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + + + ++ D+++ W++ ++ + + ++V
Sbjct: 375 MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 432
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 433 DFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 489
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L D +
Sbjct: 490 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLMAALDPRAPAGT 545
Query: 1150 LC 1155
LC
Sbjct: 546 LC 547
>ref|NP_033901.1| F-box/WD repeat-containing protein 1A isoform b [Mus musculus].
Length = 569
Score = 72.0 bits (175), Expect = 9e-13
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+V+G +D TI I+D L H G++ CL+ Y R +I+G+ D + VWD E
Sbjct: 280 IVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQ-YDERVIITGSSDSTVRVWDVNAGE 338
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + + + ++ D+++ W++ ++ + + ++V
Sbjct: 339 MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 396
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 397 DFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 453
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L D +
Sbjct: 454 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLMAALDPRAPAGT 509
Query: 1150 LC 1155
LC
Sbjct: 510 LC 511
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 70.1 bits (170), Expect = 3e-12
Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 8/253 (3%)
Frame = +1
Query: 397 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRH 576
F H + ++N++ + +GS D T+ I+ MK + H +TC+ F + H
Sbjct: 15 FKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGH 74
Query: 577 LI-SGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVE 753
L+ SG+ D + +W +AH V + G+ ++ DKT++ W+
Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWS--T 132
Query: 754 GRSAFIKNIKQNAHIV---EWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVT 924
R F+ ++ Q+ + V ++SP G + +V + + D S + + VT
Sbjct: 133 HRQRFLFSLTQHINWVRCAKFSPDG-RLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVT 191
Query: 925 FL----SESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASS 1092
++ S + +A AG + V+ +D + L ++ H V + SF P + ++TASS
Sbjct: 192 YVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAV-NALSFH-PSGNYLITASS 249
Query: 1093 DGFIKMWKLEEDK 1131
D +K+ L E +
Sbjct: 250 DSTLKILDLMEGR 262
Score = 70.1 bits (170), Expect = 3e-12
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVA---DFTHHAHTASLSAV--AVNSRFVVTGSKDETIHIYDMKKKVD 513
SGS + R W P AHTA++ +V + + +VT S D+T+ ++ ++
Sbjct: 78 SGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRF 137
Query: 514 HGALVHHNGTITCLKFYGN-RHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHP 690
+L H + C KF + R ++S ++D + +WD EC+ S H G VT++ HP
Sbjct: 138 LFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHP 197
Query: 691 SGKLALSVGTDKTLRTWN 744
SG + G D T++ W+
Sbjct: 198 SGTCIAAAGMDNTVKVWD 215
Score = 68.6 bits (166), Expect = 1e-11
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T H + + + + R +V+ S D+T+ ++D + + H G +T + F+ +
Sbjct: 142 TQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTC 201
Query: 580 ISGAE-DGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEG 756
I+ A D + VWDA+ L+ + H V LS HPSG ++ +D TL+ +L+EG
Sbjct: 202 IAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLITASSDSTLKILDLMEG 261
Query: 757 RSAFIKNIKQN-AHIVEWSPRGEKY 828
R + + Q A V +S GE +
Sbjct: 262 RLLYTLHGHQGPATTVAFSRTGEYF 286
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,463,204
Number of extensions: 1149250
Number of successful extensions: 4694
Number of sequences better than 1.0e-05: 58
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 95
Length of query: 414
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 310
Effective length of database: 12,493,815
Effective search space: 3873082650
Effective search space used: 3873082650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013667
(1243 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060376.2| p21-activated protein kinase-interacting protei... 590 e-169
Alignment gi|NP_863651.1| apoptotic protease-activating factor 1 isoform ... 79 9e-15
Alignment gi|NP_037361.1| apoptotic protease-activating factor 1 isoform ... 79 9e-15
Alignment gi|NP_036432.2| F-box/WD repeat-containing protein 11 isoform C... 76 7e-14
Alignment gi|NP_387449.2| F-box/WD repeat-containing protein 11 isoform A... 76 7e-14
Alignment gi|NP_387448.2| F-box/WD repeat-containing protein 11 isoform B... 76 7e-14
Alignment gi|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform... 74 4e-13
Alignment gi|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 ... 74 4e-13
Alignment gi|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 ... 74 4e-13
Alignment gi|NP_003930.1| F-box/WD repeat-containing protein 1A isoform 2... 72 1e-12
>ref|NP_060376.2| p21-activated protein kinase-interacting protein 1 [Homo sapiens].
Length = 392
Score = 590 bits (1522), Expect = e-169
Identities = 284/318 (89%), Positives = 301/318 (94%)
Frame = +1
Query: 289 MEVVAGCYEQVLFGFAVHPEPETSGSHERKWTPVADFTHHAHTASLSAVAVNSRFVVTGS 468
ME+VAGCYEQVLFGFAVHPEPE G HE+ WT VADFTHHAHTASLSAVAVNSRFVVTGS
Sbjct: 1 MELVAGCYEQVLFGFAVHPEPEACGDHEQ-WTLVADFTHHAHTASLSAVAVNSRFVVTGS 59
Query: 469 KDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSI 648
KDETIHIYDMKKK++HGALVHH+GTITCLKFYGNRHLISGAEDGLIC+WDAKKWECLKSI
Sbjct: 60 KDETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSI 119
Query: 649 KAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKY 828
KAHKG VTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGE+Y
Sbjct: 120 KAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQY 179
Query: 829 VVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLS 1008
VV+I NKIDIY+LDTAS+SGTITN KR+SSV FLSESVLAVAGDEEV+RFFDCDSL CL
Sbjct: 180 VVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLC 239
Query: 1009 EFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLLCEINTNARLTCL 1188
EFKAHENRVKD+FSFE PEHHVIV+ASSDGFIKMWKL++DKKV PSLLCEINTNARLTCL
Sbjct: 240 EFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCL 299
Query: 1189 GVWLGNVTDTKESMPPAA 1242
GVWL V D KES+PPAA
Sbjct: 300 GVWLDKVADMKESLPPAA 317
>ref|NP_863651.1| apoptotic protease-activating factor 1 isoform c [Homo sapiens].
Length = 1248
Score = 79.0 bits (193), Expect = 9e-15
Identities = 66/273 (24%), Positives = 118/273 (43%), Gaps = 24/273 (8%)
Frame = +1
Query: 406 HAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVH----HNGTITCLKFYGNR 573
H A + + RF+ T S D+ + I++ G LVH H+ + C F +
Sbjct: 656 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT----GELVHTYDEHSEQVNCCHFTNSS 711
Query: 574 H---LISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWN 744
H L +G+ D + +WD + EC ++ H V P KL S D TL+ W+
Sbjct: 712 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 771
Query: 745 LVEGRSAFIKNIKQ----------NAHIV----EWSPRGEKYVVVILNKIDIYRLDTASV 882
N+KQ + ++ WS G + +V NKI ++ + T+ +
Sbjct: 772 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGL 831
Query: 883 SGTITNA--KRVSSVTFLSESVLA-VAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSF 1053
G I + F ++ LA VA + V ++ DS + +++ + H + V V
Sbjct: 832 LGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMF- 890
Query: 1054 ETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLL 1152
+P+ +T+S D I++W+ ++ K S +L
Sbjct: 891 -SPDGSSFLTSSDDQTIRLWETKKVCKNSAVML 922
Score = 49.7 bits (117), Expect = 6e-06
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Frame = +1
Query: 394 DFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNR 573
DF H T ++ ++ + S D+T I+ + L HNG + C F +
Sbjct: 1080 DFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDS 1139
Query: 574 HLI-SGAEDGLICVWDAKKWECL--------KSIKAHKGHVTFLSIHPSGKLALSVGTDK 726
L+ +G ++G I +W+ E L + H G VT L P GK+ +S G
Sbjct: 1140 TLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--G 1197
Query: 727 TLRTWNLVEGRSA--FIKNIKQNAHIVEWSPRGEKYVVV 837
++ WN+V G S+ F N N + SP + YV V
Sbjct: 1198 YIKWWNVVTGESSQTFYTN-GTNLKKIHVSPDFKTYVTV 1235
>ref|NP_037361.1| apoptotic protease-activating factor 1 isoform a [Homo sapiens].
Length = 1237
Score = 79.0 bits (193), Expect = 9e-15
Identities = 66/273 (24%), Positives = 118/273 (43%), Gaps = 24/273 (8%)
Frame = +1
Query: 406 HAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVH----HNGTITCLKFYGNR 573
H A + + RF+ T S D+ + I++ G LVH H+ + C F +
Sbjct: 645 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT----GELVHTYDEHSEQVNCCHFTNSS 700
Query: 574 H---LISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWN 744
H L +G+ D + +WD + EC ++ H V P KL S D TL+ W+
Sbjct: 701 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 760
Query: 745 LVEGRSAFIKNIKQ----------NAHIV----EWSPRGEKYVVVILNKIDIYRLDTASV 882
N+KQ + ++ WS G + +V NKI ++ + T+ +
Sbjct: 761 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGL 820
Query: 883 SGTITNA--KRVSSVTFLSESVLA-VAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSF 1053
G I + F ++ LA VA + V ++ DS + +++ + H + V V
Sbjct: 821 LGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMF- 879
Query: 1054 ETPEHHVIVTASSDGFIKMWKLEEDKKVSPSLL 1152
+P+ +T+S D I++W+ ++ K S +L
Sbjct: 880 -SPDGSSFLTSSDDQTIRLWETKKVCKNSAVML 911
Score = 49.7 bits (117), Expect = 6e-06
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Frame = +1
Query: 394 DFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNR 573
DF H T ++ ++ + S D+T I+ + L HNG + C F +
Sbjct: 1069 DFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDS 1128
Query: 574 HLI-SGAEDGLICVWDAKKWECL--------KSIKAHKGHVTFLSIHPSGKLALSVGTDK 726
L+ +G ++G I +W+ E L + H G VT L P GK+ +S G
Sbjct: 1129 TLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--G 1186
Query: 727 TLRTWNLVEGRSA--FIKNIKQNAHIVEWSPRGEKYVVV 837
++ WN+V G S+ F N N + SP + YV V
Sbjct: 1187 YIKWWNVVTGESSQTFYTN-GTNLKKIHVSPDFKTYVTV 1224
>ref|NP_036432.2| F-box/WD repeat-containing protein 11 isoform C [Homo sapiens].
Length = 542
Score = 75.9 bits (185), Expect = 7e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 253 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 311
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 312 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 369
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 370 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 426
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 427 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 482
Query: 1150 LC 1155
LC
Sbjct: 483 LC 484
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 398 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 456
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 457 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 514
Query: 733 RTWNLV 750
W+ +
Sbjct: 515 LIWDFL 520
>ref|NP_387449.2| F-box/WD repeat-containing protein 11 isoform A [Homo sapiens].
Length = 508
Score = 75.9 bits (185), Expect = 7e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 219 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 277
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 278 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 335
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 336 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 392
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 393 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 448
Query: 1150 LC 1155
LC
Sbjct: 449 LC 450
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 364 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 422
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 423 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 480
Query: 733 RTWNLV 750
W+ +
Sbjct: 481 LIWDFL 486
>ref|NP_387448.2| F-box/WD repeat-containing protein 11 isoform B [Homo sapiens].
Length = 529
Score = 75.9 bits (185), Expect = 7e-14
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+++G +D +I I+D L H G++ CL+ Y R +++G+ D + VWD E
Sbjct: 240 IISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQ-YDERVIVTGSSDSTVRVWDVNTGE 298
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + S L ++ D+++ W++ ++ + + ++V
Sbjct: 299 VLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVV 356
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 357 DFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 413
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L+ D + S
Sbjct: 414 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLQAALDPRAPAST 469
Query: 1150 LC 1155
LC
Sbjct: 470 LC 471
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + H ++ + R VV+GS D TI ++D++ L H + C++F N+ +
Sbjct: 385 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRI 443
Query: 580 ISGAEDGLICVWDAK---------KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTL 732
+SGA DG I VWD + CL+++ H G V L +S D T+
Sbjct: 444 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTI 501
Query: 733 RTWNLV 750
W+ +
Sbjct: 502 LIWDFL 507
>ref|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].
Length = 589
Score = 73.6 bits (179), Expect = 4e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 338 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 396
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 397 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 450
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 451 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 474
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 475 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 533
Query: 1120 E 1122
+
Sbjct: 534 K 534
Score = 70.9 bits (172), Expect = 2e-12
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Frame = +1
Query: 529 HHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H + ITCL+F GNR ++SG++D + VW A +CL+++ H G V S + +
Sbjct: 261 HDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIII 317
Query: 709 SVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILN--KIDIYRLDTASV 882
S TD+TL+ WN G I + + V EK VV + ++ ++T
Sbjct: 318 SGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 375
Query: 883 SGTIT-NAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFET 1059
+ + V V + V++ A D +V+ +D ++ TCL + H NR V+S +
Sbjct: 376 LHVLMGHVAAVRCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNR---VYSLQF 431
Query: 1060 PEHHVIVTASSDGFIKMWKLE 1122
HV V+ S D I++W +E
Sbjct: 432 DGIHV-VSGSLDTSIRVWDVE 451
Score = 52.4 bits (124), Expect = 9e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 398 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 457
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 458 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 516
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 517 N--FVITSSDDGTVKLWDLKTGE--FIRNL 542
>ref|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 [Homo sapiens].
Length = 707
Score = 73.6 bits (179), Expect = 4e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 456 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 514
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 515 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 568
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 569 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 592
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 593 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 651
Query: 1120 E 1122
+
Sbjct: 652 K 652
Score = 70.9 bits (172), Expect = 2e-12
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Frame = +1
Query: 529 HHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H + ITCL+F GNR ++SG++D + VW A +CL+++ H G V S + +
Sbjct: 379 HDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIII 435
Query: 709 SVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILN--KIDIYRLDTASV 882
S TD+TL+ WN G I + + V EK VV + ++ ++T
Sbjct: 436 SGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 493
Query: 883 SGTIT-NAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFET 1059
+ + V V + V++ A D +V+ +D ++ TCL + H NR V+S +
Sbjct: 494 LHVLMGHVAAVRCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNR---VYSLQF 549
Query: 1060 PEHHVIVTASSDGFIKMWKLE 1122
HV V+ S D I++W +E
Sbjct: 550 DGIHV-VSGSLDTSIRVWDVE 569
Score = 52.4 bits (124), Expect = 9e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 516 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 575
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 576 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 634
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 635 N--FVITSSDDGTVKLWDLKTGE--FIRNL 660
>ref|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 [Homo sapiens].
Length = 627
Score = 73.6 bits (179), Expect = 4e-13
Identities = 52/241 (21%), Positives = 107/241 (44%)
Frame = +1
Query: 400 THHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHL 579
T + HT+++ + ++ + VV+GS+D T+ ++D++ L+ H + C+++ G R +
Sbjct: 376 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-V 434
Query: 580 ISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGR 759
+SGA D ++ VWD + CL +++ H V S+ G +S D ++R W++
Sbjct: 435 VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV---- 488
Query: 760 SAFIKNIKQNAHIVEWSPRGEKYVVVILNKIDIYRLDTASVSGTITNAKRVSSVTFLSES 939
+T + T+T + ++S L ++
Sbjct: 489 ------------------------------------ETGNCIHTLTGHQSLTSGMELKDN 512
Query: 940 VLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKL 1119
+L + V+ +D + CL + V + ++ VI T+S DG +K+W L
Sbjct: 513 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 571
Query: 1120 E 1122
+
Sbjct: 572 K 572
Score = 70.9 bits (172), Expect = 2e-12
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Frame = +1
Query: 529 HHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKAHKGHVTFLSIHPSGKLAL 708
H + ITCL+F GNR ++SG++D + VW A +CL+++ H G V S + +
Sbjct: 299 HDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIII 355
Query: 709 SVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEKYVVVILN--KIDIYRLDTASV 882
S TD+TL+ WN G I + + V EK VV + ++ ++T
Sbjct: 356 SGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 413
Query: 883 SGTIT-NAKRVSSVTFLSESVLAVAGDEEVVRFFDCDSLTCLSEFKAHENRVKDVFSFET 1059
+ + V V + V++ A D +V+ +D ++ TCL + H NR V+S +
Sbjct: 414 LHVLMGHVAAVRCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNR---VYSLQF 469
Query: 1060 PEHHVIVTASSDGFIKMWKLE 1122
HV V+ S D I++W +E
Sbjct: 470 DGIHV-VSGSLDTSIRVWDVE 489
Score = 52.4 bits (124), Expect = 9e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +1
Query: 358 SGSHE---RKWTPVADFTHHA---HTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHG 519
SG+++ + W P + H HT + ++ + VV+GS D +I ++D++
Sbjct: 436 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 495
Query: 520 ALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWECLKSIKA---HKGHVTFLSIHP 690
L H + ++ N L+SG D + +WD K +CL++++ H+ VT L +
Sbjct: 496 TLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 554
Query: 691 SGKLALSVGTDKTLRTWNLVEGRSAFIKNI 780
+ ++ D T++ W+L G FI+N+
Sbjct: 555 N--FVITSSDDGTVKLWDLKTGE--FIRNL 580
>ref|NP_003930.1| F-box/WD repeat-containing protein 1A isoform 2 [Homo sapiens].
Length = 569
Score = 72.0 bits (175), Expect = 1e-12
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Frame = +1
Query: 454 VVTGSKDETIHIYDMKKKVDHGALVHHNGTITCLKFYGNRHLISGAEDGLICVWDAKKWE 633
+V+G +D TI I+D L H G++ CL+ Y R +I+G+ D + VWD E
Sbjct: 280 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ-YDERVIITGSSDSTVRVWDVNTGE 338
Query: 634 CLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNI----KQNAHIV 801
L ++ H V L + + + ++ D+++ W++ ++ + + ++V
Sbjct: 339 MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 396
Query: 802 EWSPRGEKYVVVIL--NKIDIYRLDTASVSGTITNAKRVSSVTFLSESVLAVAGDEEVVR 975
++ +KY+V I ++ T T+ KR + + ++ + +R
Sbjct: 397 DFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 453
Query: 976 FFDCDSLTCLSEFKAHENRVKDVFSFETPEHHVIVTASSDGFIKMWKLEE--DKKVSPSL 1149
+D + CL + HE V+ + F+ IV+ + DG IK+W L D +
Sbjct: 454 LWDIECGACLRVLEGHEELVRCI-RFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGT 509
Query: 1150 LC 1155
LC
Sbjct: 510 LC 511
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,919,102
Number of extensions: 1365129
Number of successful extensions: 5756
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 5325
Number of HSP's successfully gapped: 122
Length of query: 414
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,835,944
Effective search space: 4584306696
Effective search space used: 4584306696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013667
(1243 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 735 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 735 bits (371), Expect = 0.0
Identities = 371/371 (100%)
Strand = Plus / Plus
Query: 2 tgacacggggcttcctagaatatgcctgctgatcctccgtttgctttctccttgaaatga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7756837 tgacacggggcttcctagaatatgcctgctgatcctccgtttgctttctccttgaaatga 7756896
Query: 62 gactctcgccatgtggcgtcctttcttattctcctcttggtaattccgcgtgatcttcta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7756897 gactctcgccatgtggcgtcctttcttattctcctcttggtaattccgcgtgatcttcta 7756956
Query: 122 gtcccgaaatctctcccatggagtcaggcgcctaaaaggcagccccgcggtcttgacgta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7756957 gtcccgaaatctctcccatggagtcaggcgcctaaaaggcagccccgcggtcttgacgta 7757016
Query: 182 aatttgagcgccgacgcaagaaggaccccctctgccccttgcgtccgcttgcgtcactgc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7757017 aatttgagcgccgacgcaagaaggaccccctctgccccttgcgtccgcttgcgtcactgc 7757076
Query: 242 ccagctgcgccgagccccgctcgctgaggaggcacgtgcgctgctgaatggaggtggtgg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7757077 ccagctgcgccgagccccgctcgctgaggaggcacgtgcgctgctgaatggaggtggtgg 7757136
Query: 302 ctggttgctacgagcaggttctttttgggttcgctgtacacccggagcccgagacgagcg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7757137 ctggttgctacgagcaggttctttttgggttcgctgtacacccggagcccgagacgagcg 7757196
Query: 362 gcagccacgag 372
|||||||||||
Sbjct: 7757197 gcagccacgag 7757207
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 371 agcggaaatggactcccgtggccgacttcactcaccacgcccacacggcctccttgtcag 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7759890 agcggaaatggactcccgtggccgacttcactcaccacgcccacacggcctccttgtcag 7759949
Query: 431 cggtggccgtaaacagccgatttgttgtcactgggagcaaagatgaaaccattcacattt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7759950 cggtggccgtaaacagccgatttgttgtcactgggagcaaagatgaaaccattcacattt 7760009
Query: 491 atgacatgaaaaagaaggtagaccacggggctctagtgcatcacaacgg 539
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7760010 atgacatgaaaaagaaggtagaccacggggctctagtgcatcacaacgg 7760058
Score = 283 bits (143), Expect = 1e-73
Identities = 146/147 (99%)
Strand = Plus / Plus
Query: 788 atgctcacatagtggaatggtccccaagaggagagaagtatgtagttgtcatactgaata 847
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7764346 atgctcacatagtggaatggtccccaagaggagagaagtatgtagttgtcgtactgaata 7764405
Query: 848 aaatagacatctatcggcttgacactgcatctgtcagtggcaccatcacaaatgcgaaga 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7764406 aaatagacatctatcggcttgacactgcatctgtcagtggcaccatcacaaatgcgaaga 7764465
Query: 908 gagtgtcctcggttacttttctttcag 934
|||||||||||||||||||||||||||
Sbjct: 7764466 gagtgtcctcggttacttttctttcag 7764492
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 538 ggcacaataacttgcctgaaattttacggcaacaggcacttaatcagcggtgctgaggac 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7762687 ggcacaataacttgcctgaaattttacggcaacaggcacttaatcagcggtgctgaggac 7762746
Query: 598 ggactcatttgtgtctgggatgccaagaaatgggagtgcctaaagtcgataaaagcccac 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7762747 ggactcatttgtgtctgggatgccaagaaatgggagtgcctaaagtcgataaaagcccac 7762806
Query: 658 aa 659
||
Sbjct: 7762807 aa 7762808
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 934 gagtctgttcttgcagtggctggagatgaagaagttgtgaggttttttgactgtgattca 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7764590 gagtctgttcttgcagtggctggagatgaagaagttgtgaggttttttgactgtgattca 7764649
Query: 994 ctaacgtgcctctcagaatttaaagcccatgaaaacagg 1032
|||||||||||||||||||||||||||||||||||||||
Sbjct: 7764650 ctaacgtgcctctcagaatttaaagcccatgaaaacagg 7764688
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1030 agggtaaaagacgtgttcagttttgaaactccagagcatcatgttatcgttacagcatcg 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7766752 agggtaaaagacgtgttcagttttgaaactccagagcatcatgttatcgttacagcatcg 7766811
Query: 1090 agtgatggtttcatcaagatgtggaagctggaggagga 1127
||||||||||||||||||||||||||||||||||||||
Sbjct: 7766812 agtgatggtttcatcaagatgtggaagctggaggagga 7766849
Score = 178 bits (90), Expect = 5e-42
Identities = 108/114 (94%)
Strand = Plus / Plus
Query: 1130 agaaagtttccccatctttactgtgtgaaattaacaccaacgccaggctgacctgtcttg 1189
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 7768089 agaaagtttccccatctttactgtgtgaagtaaacaccaacgccaggctgacctgtcttg 7768148
Query: 1190 gagtgtggctgggaaacgtgacagacacgaaagaaagcatgcctccagctgcag 1243
|||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 7768149 gagtgtggctggacacggtgacagacacgaaagaaagcatgcctccagctgcag 7768202
Score = 141 bits (71), Expect = 1e-30
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 660 aggacacgtgaccttcctttccattcacccgtctggcaagttggccctgtctgtgggtac 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7762885 aggacacgtgaccttcctttccattcacccgtctggcaagttggctctgtctgtgggtac 7762944
Query: 720 agacaagacactaag 734
|||||||||||||||
Sbjct: 7762945 agacaagacactaag 7762959
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 733 agaacatggaatcttgtggaaggaagatcggcattcattaaaaatatcaagcaaa 787
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7763901 agaacatggaatcttgtggaaggaagatcggcattcattaaaaatatcaagcaaa 7763955
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,502,636
Number of extensions: 176
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 9
Length of query: 1243
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1222
Effective length of database: 2,808,413,156
Effective search space: 3431880876632
Effective search space used: 3431880876632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)