Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013669
(998 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857209.1| PREDICTED: similar to tubulin tyrosine ligase-l... 447 e-126
Alignment gi|XP_857121.1| PREDICTED: similar to tubulin tyrosine ligase-l... 447 e-126
Alignment gi|XP_848798.1| PREDICTED: similar to tubulin tyrosine ligase-l... 447 e-126
Alignment gi|XP_538342.2| PREDICTED: similar to tubulin tyrosine ligase-l... 366 e-101
Alignment gi|XP_534378.2| PREDICTED: similar to tubulin tyrosine ligase l... 189 5e-48
Alignment gi|XP_868194.1| PREDICTED: similar to tubulin tyrosine ligase-l... 110 2e-24
Alignment gi|XP_868191.1| PREDICTED: similar to tubulin tyrosine ligase-l... 110 2e-24
Alignment gi|XP_854090.1| PREDICTED: similar to tubulin tyrosine ligase-l... 110 2e-24
Alignment gi|XP_868184.1| PREDICTED: similar to tubulin tyrosine ligase-l... 110 2e-24
Alignment gi|XP_536196.2| PREDICTED: similar to CG5987-PA [Canis familiar... 105 5e-23
>ref|XP_857209.1| PREDICTED: similar to tubulin tyrosine ligase-like family, member 1
isoform a isoform 6 [Canis familiaris].
Length = 394
Score = 447 bits (1150), Expect = e-126
Identities = 215/221 (97%), Positives = 219/221 (99%)
Frame = +2
Query: 335 MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 514
MAGKVKWVTDIEKSVLINNFEKRGWVQVTE+EDWNFYWMSVQTIRNVFSVETGYRLSDDQ
Sbjct: 1 MAGKVKWVTDIEKSVLINNFEKRGWVQVTENEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 60
Query: 515 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 694
IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDE+GKYLYLDFVPVTYMLPADY
Sbjct: 61 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDENGKYLYLDFVPVTYMLPADY 120
Query: 695 NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 874
NLFVEEFRKSPSSTWIMKPCG+AQGKGIFLINKLSQIKKWSRDSKTSSFV+QS KEAYVI
Sbjct: 121 NLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIKKWSRDSKTSSFVTQSTKEAYVI 180
Query: 875 SLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
SLYI NPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF
Sbjct: 181 SLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 221
>ref|XP_857121.1| PREDICTED: similar to tubulin tyrosine ligase-like 1 (predicted)
isoform 5 [Canis familiaris].
Length = 403
Score = 447 bits (1150), Expect = e-126
Identities = 215/221 (97%), Positives = 219/221 (99%)
Frame = +2
Query: 335 MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 514
MAGKVKWVTDIEKSVLINNFEKRGWVQVTE+EDWNFYWMSVQTIRNVFSVETGYRLSDDQ
Sbjct: 1 MAGKVKWVTDIEKSVLINNFEKRGWVQVTENEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 60
Query: 515 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 694
IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDE+GKYLYLDFVPVTYMLPADY
Sbjct: 61 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDENGKYLYLDFVPVTYMLPADY 120
Query: 695 NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 874
NLFVEEFRKSPSSTWIMKPCG+AQGKGIFLINKLSQIKKWSRDSKTSSFV+QS KEAYVI
Sbjct: 121 NLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIKKWSRDSKTSSFVTQSTKEAYVI 180
Query: 875 SLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
SLYI NPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF
Sbjct: 181 SLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 221
>ref|XP_848798.1| PREDICTED: similar to tubulin tyrosine ligase-like family, member 1
isoform a isoform 4 [Canis familiaris].
Length = 423
Score = 447 bits (1150), Expect = e-126
Identities = 215/221 (97%), Positives = 219/221 (99%)
Frame = +2
Query: 335 MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 514
MAGKVKWVTDIEKSVLINNFEKRGWVQVTE+EDWNFYWMSVQTIRNVFSVETGYRLSDDQ
Sbjct: 1 MAGKVKWVTDIEKSVLINNFEKRGWVQVTENEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 60
Query: 515 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 694
IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDE+GKYLYLDFVPVTYMLPADY
Sbjct: 61 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDENGKYLYLDFVPVTYMLPADY 120
Query: 695 NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 874
NLFVEEFRKSPSSTWIMKPCG+AQGKGIFLINKLSQIKKWSRDSKTSSFV+QS KEAYVI
Sbjct: 121 NLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIKKWSRDSKTSSFVTQSTKEAYVI 180
Query: 875 SLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
SLYI NPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF
Sbjct: 181 SLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 221
>ref|XP_538342.2| PREDICTED: similar to tubulin tyrosine ligase-like family, member 1
isoform a isoform 3 [Canis familiaris].
Length = 385
Score = 366 bits (939), Expect = e-101
Identities = 178/183 (97%), Positives = 181/183 (98%)
Frame = +2
Query: 449 MSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEK 628
MSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEK
Sbjct: 1 MSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEK 60
Query: 629 DESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIK 808
DE+GKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCG+AQGKGIFLINKLSQIK
Sbjct: 61 DENGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIK 120
Query: 809 KWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGF 988
KWSRDSKTSSFV+QS KEAYVISLYI NPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGF
Sbjct: 121 KWSRDSKTSSFVTQSTKEAYVISLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGF 180
Query: 989 CRF 997
CRF
Sbjct: 181 CRF 183
>ref|XP_534378.2| PREDICTED: similar to tubulin tyrosine ligase like family 9 [Canis
familiaris].
Length = 461
Score = 189 bits (479), Expect = 5e-48
Identities = 106/241 (43%), Positives = 140/241 (58%), Gaps = 32/241 (13%)
Frame = +2
Query: 371 KSVLINNF-----EKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQI-VNHFP 532
K+ L+N + GWV+V + +W+FYW V +R F + D+ + ++HF
Sbjct: 29 KTTLMNTLMDVLRHRPGWVEVKDEGEWDFYWCDVSWLRENFD----HTYMDEHVRISHFR 84
Query: 533 NHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEE 712
NHYELTRK+ MVKN+KR+RK+LE+E L E+ K DF P T+ +P +Y+LFVEE
Sbjct: 85 NHYELTRKNYMVKNLKRFRKQLEREAGKL----EAAK---CDFFPKTFEMPCEYHLFVEE 137
Query: 713 FRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKW-------------------------S 817
FRK+P TWIMKP R+QGKGIFL +L I W S
Sbjct: 138 FRKNPGITWIMKPVARSQGKGIFLFRRLKDIMDWRKGTAGKKLTGLEAPPARNTVNPSGS 197
Query: 818 RDSKTS-SFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCR 994
DS++S + P E YV YI NP LIGGRKFDLR+YVLV +Y PLR ++Y+ GF R
Sbjct: 198 HDSRSSDDQKDEIPVENYVAQRYIENPYLIGGRKFDLRVYVLVMSYIPLRAWLYRDGFAR 257
Query: 995 F 997
F
Sbjct: 258 F 258
>ref|XP_868194.1| PREDICTED: similar to tubulin tyrosine ligase-like family, member 5
isoform 5 [Canis familiaris].
Length = 1209
Score = 110 bits (275), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +2
Query: 425 SEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEK 604
S D+N W F + T LS+ Q VNHFP YELTRKD + KNI R +
Sbjct: 89 STDYNLMWTGSHL--KPFLLRT---LSEAQKVNHFPRSYELTRKDRLYKNIIRMQ----- 138
Query: 605 EGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFL 784
+ + +P T++LPA+Y F + K WI+KP ++G+G++L
Sbjct: 139 ---------HTHGFKAFHILPQTFLLPAEYAEFCNSYSKD-RGPWIVKPVASSRGRGVYL 188
Query: 785 INKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLR 964
IN +QI S +E ++S YI NPLLI KFD+RLYVLV++Y PL
Sbjct: 189 INNPNQI---------------SLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLV 233
Query: 965 CYMYKLGFCRF 997
Y+Y+ G RF
Sbjct: 234 IYLYEEGLARF 244
>ref|XP_868191.1| PREDICTED: similar to tubulin tyrosine ligase-like family, member 5
isoform 4 [Canis familiaris].
Length = 1209
Score = 110 bits (275), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +2
Query: 425 SEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEK 604
S D+N W F + T LS+ Q VNHFP YELTRKD + KNI R +
Sbjct: 89 STDYNLMWTGSHL--KPFLLRT---LSEAQKVNHFPRSYELTRKDRLYKNIIRMQ----- 138
Query: 605 EGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFL 784
+ + +P T++LPA+Y F + K WI+KP ++G+G++L
Sbjct: 139 ---------HTHGFKAFHILPQTFLLPAEYAEFCNSYSKD-RGPWIVKPVASSRGRGVYL 188
Query: 785 INKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLR 964
IN +QI S +E ++S YI NPLLI KFD+RLYVLV++Y PL
Sbjct: 189 INNPNQI---------------SLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLV 233
Query: 965 CYMYKLGFCRF 997
Y+Y+ G RF
Sbjct: 234 IYLYEEGLARF 244
>ref|XP_854090.1| PREDICTED: similar to tubulin tyrosine ligase-like family, member 5
isoform 2 [Canis familiaris].
Length = 1261
Score = 110 bits (275), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +2
Query: 425 SEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEK 604
S D+N W F + T LS+ Q VNHFP YELTRKD + KNI R +
Sbjct: 89 STDYNLMWTGSHL--KPFLLRT---LSEAQKVNHFPRSYELTRKDRLYKNIIRMQ----- 138
Query: 605 EGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFL 784
+ + +P T++LPA+Y F + K WI+KP ++G+G++L
Sbjct: 139 ---------HTHGFKAFHILPQTFLLPAEYAEFCNSYSKD-RGPWIVKPVASSRGRGVYL 188
Query: 785 INKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLR 964
IN +QI S +E ++S YI NPLLI KFD+RLYVLV++Y PL
Sbjct: 189 INNPNQI---------------SLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLV 233
Query: 965 CYMYKLGFCRF 997
Y+Y+ G RF
Sbjct: 234 IYLYEEGLARF 244
>ref|XP_868184.1| PREDICTED: similar to tubulin tyrosine ligase-like family, member 5
isoform 3 [Canis familiaris].
Length = 526
Score = 110 bits (275), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +2
Query: 425 SEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEK 604
S D+N W F + T LS+ Q VNHFP YELTRKD + KNI R +
Sbjct: 89 STDYNLMWTGSHL--KPFLLRT---LSEAQKVNHFPRSYELTRKDRLYKNIIRMQ----- 138
Query: 605 EGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFL 784
+ + +P T++LPA+Y F + K WI+KP ++G+G++L
Sbjct: 139 ---------HTHGFKAFHILPQTFLLPAEYAEFCNSYSKD-RGPWIVKPVASSRGRGVYL 188
Query: 785 INKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLR 964
IN +QI S +E ++S YI NPLLI KFD+RLYVLV++Y PL
Sbjct: 189 INNPNQI---------------SLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLV 233
Query: 965 CYMYKLGFCRF 997
Y+Y+ G RF
Sbjct: 234 IYLYEEGLARF 244
>ref|XP_536196.2| PREDICTED: similar to CG5987-PA [Canis familiaris].
Length = 944
Score = 105 bits (263), Expect = 5e-23
Identities = 66/198 (33%), Positives = 92/198 (46%)
Frame = +2
Query: 404 GWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKR 583
G +V E E+W YW S+E + Q +NHFP E+ RKDL+ +N+ R
Sbjct: 148 GLKEVGEDEEWTVYWTDCSV-----SLERVMDMKRFQKINHFPGMTEICRKDLLARNLNR 202
Query: 584 YRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRA 763
+K E + P T+ LPADY F R+ + T+I KP
Sbjct: 203 MQKLYPTE---------------YNIFPRTWCLPADYGDFQSYGRQRKTRTYICKPDSGC 247
Query: 764 QGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLV 943
QG+GIF+ +IK P E + YI P LI G KFD+R+YVL+
Sbjct: 248 QGRGIFITRNPREIK---------------PGEHMICQQYISKPFLIDGFKFDMRIYVLI 292
Query: 944 STYRPLRCYMYKLGFCRF 997
++ PLR +MY+ G RF
Sbjct: 293 TSCDPLRIFMYEEGLARF 310
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,371,491
Number of extensions: 1096200
Number of successful extensions: 3583
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 18
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013669
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013669
(998 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069639.1| probable tubulin polyglutamylase TTLL1 [Bos ... 448 e-126
Alignment gi|NP_001030455.1| probable tubulin polyglutamylase TTLL9 [Bos ... 186 3e-47
Alignment gi|XP_002691141.1| PREDICTED: CG3964-like [Bos taurus]. 110 2e-24
Alignment gi|XP_618627.4| PREDICTED: mCG121822-like [Bos taurus]. 110 2e-24
Alignment gi|XP_002695986.1| PREDICTED: tubulin tyrosine ligase-like fami... 107 2e-23
Alignment gi|XP_002702247.1| PREDICTED: tubulin tyrosine ligase-like fami... 107 2e-23
Alignment gi|NP_001069261.1| probable tubulin polyglutamylase TTLL2 [Bos ... 102 4e-22
Alignment gi|NP_001192637.1| tubulin polyglutamylase TTLL4 [Bos taurus]. 91 2e-18
Alignment gi|XP_002685620.1| PREDICTED: CG3964-like [Bos taurus]. 91 2e-18
Alignment gi|NP_001179872.1| tubulin polyglutamylase TTLL7 [Bos taurus]. 77 3e-14
>ref|NP_001069639.1| probable tubulin polyglutamylase TTLL1 [Bos taurus].
Length = 423
Score = 448 bits (1153), Expect = e-126
Identities = 216/221 (97%), Positives = 219/221 (99%)
Frame = +2
Query: 335 MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 514
MAGKVKWVTDIEKSVLINNFEKRGWVQVTE+EDWNFYWMSVQTIRNVFSVETGYRLSDDQ
Sbjct: 1 MAGKVKWVTDIEKSVLINNFEKRGWVQVTENEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 60
Query: 515 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 694
IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY
Sbjct: 61 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 120
Query: 695 NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 874
NLFVEEFRKSPSSTWIMKPCG+AQGKGIFLINKLSQIKKWSRDSKTSSFV+QS KEAYVI
Sbjct: 121 NLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIKKWSRDSKTSSFVTQSTKEAYVI 180
Query: 875 SLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
SLYI NPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF
Sbjct: 181 SLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 221
>ref|NP_001030455.1| probable tubulin polyglutamylase TTLL9 [Bos taurus].
Length = 461
Score = 186 bits (472), Expect = 3e-47
Identities = 102/240 (42%), Positives = 135/240 (56%), Gaps = 31/240 (12%)
Frame = +2
Query: 371 KSVLINNF-----EKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPN 535
K+ L+N + GWV+V + +W+FYW V +R F + + ++HF N
Sbjct: 29 KTTLMNTLMDVLRHRPGWVEVKDEGEWDFYWCDVSWLRENFDHTY---MGEHVRISHFRN 85
Query: 536 HYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEF 715
HYELTRK+ MVKN+KR+RK+LE+E L E+ K DF P T+ +P +Y+LFVEEF
Sbjct: 86 HYELTRKNYMVKNLKRFRKQLEREAGKL----EAAK---CDFFPKTFEMPCEYHLFVEEF 138
Query: 716 RKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVS---------------- 847
RK+P TWIMKP R+QGKGIFL +L I W + + S
Sbjct: 139 RKNPGITWIMKPVARSQGKGIFLFRRLKDIMDWKKGTAGKKLTSLEAQPARNTVNPSGSH 198
Query: 848 ----------QSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
+ P E YV YI NP LIGGRKFDLR+YVLV +Y PLR ++Y+ GF RF
Sbjct: 199 DTRSSDDQKDEIPVENYVAQRYIENPYLIGGRKFDLRVYVLVMSYIPLRAWLYRDGFARF 258
>ref|XP_002691141.1| PREDICTED: CG3964-like [Bos taurus].
Length = 1284
Score = 110 bits (275), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +2
Query: 425 SEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEK 604
S D+N W F + T LS+ Q VNHFP YELTRKD + KNI R +
Sbjct: 93 STDYNLMWTGSHL--KPFLLRT---LSEAQKVNHFPRSYELTRKDRLYKNIIRMQ----- 142
Query: 605 EGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFL 784
+ + +P T++LPA+Y F + K WI+KP ++G+G++L
Sbjct: 143 ---------HTHGFKAFHILPQTFLLPAEYAEFCNSYSKD-RGPWIVKPVASSRGRGVYL 192
Query: 785 INKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLR 964
IN +QI S +E ++S YI NPLLI KFD+RLYVLV++Y PL
Sbjct: 193 INNPNQI---------------SLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLV 237
Query: 965 CYMYKLGFCRF 997
Y+Y+ G RF
Sbjct: 238 IYLYEEGLARF 248
>ref|XP_618627.4| PREDICTED: mCG121822-like [Bos taurus].
Length = 1331
Score = 110 bits (275), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +2
Query: 425 SEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEK 604
S D+N W F + T LS+ Q VNHFP YELTRKD + KNI R +
Sbjct: 93 STDYNLMWTGSHL--KPFLLRT---LSEAQKVNHFPRSYELTRKDRLYKNIIRMQ----- 142
Query: 605 EGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFL 784
+ + +P T++LPA+Y F + K WI+KP ++G+G++L
Sbjct: 143 ---------HTHGFKAFHILPQTFLLPAEYAEFCNSYSKD-RGPWIVKPVASSRGRGVYL 192
Query: 785 INKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLR 964
IN +QI S +E ++S YI NPLLI KFD+RLYVLV++Y PL
Sbjct: 193 INNPNQI---------------SLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLV 237
Query: 965 CYMYKLGFCRF 997
Y+Y+ G RF
Sbjct: 238 IYLYEEGLARF 248
>ref|XP_002695986.1| PREDICTED: tubulin tyrosine ligase-like family, member 6 [Bos
taurus].
Length = 901
Score = 107 bits (266), Expect = 2e-23
Identities = 64/192 (33%), Positives = 89/192 (46%)
Frame = +2
Query: 422 ESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELE 601
E++DW YW S+E + Q +NHFP E+ RKDL+ +N+ R K
Sbjct: 141 ENDDWTLYWTDFSV-----SLERVMEMKSYQKINHFPGMSEICRKDLLARNMSRMLKMFP 195
Query: 602 KEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIF 781
K+ F P T+ LPAD+ R + T+I KP QGKGIF
Sbjct: 196 KD---------------FHFFPRTWCLPADWGDLQNYSRSRKNKTYICKPDSGCQGKGIF 240
Query: 782 LINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPL 961
+ + +IK P E + LYI P +I G KFDLR+YVL+++ PL
Sbjct: 241 ITRTVKEIK---------------PGEDMICQLYISKPFIIDGFKFDLRIYVLMTSCDPL 285
Query: 962 RCYMYKLGFCRF 997
R ++Y G RF
Sbjct: 286 RIFVYNEGLARF 297
>ref|XP_002702247.1| PREDICTED: tubulin tyrosine ligase-like family, member 6 [Bos
taurus].
Length = 901
Score = 107 bits (266), Expect = 2e-23
Identities = 64/192 (33%), Positives = 89/192 (46%)
Frame = +2
Query: 422 ESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELE 601
E++DW YW S+E + Q +NHFP E+ RKDL+ +N+ R K
Sbjct: 141 ENDDWTLYWTDFSV-----SLERVMEMKSYQKINHFPGMSEICRKDLLARNMSRMLKMFP 195
Query: 602 KEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIF 781
K+ F P T+ LPAD+ R + T+I KP QGKGIF
Sbjct: 196 KD---------------FHFFPRTWCLPADWGDLQNYSRSRKNKTYICKPDSGCQGKGIF 240
Query: 782 LINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPL 961
+ + +IK P E + LYI P +I G KFDLR+YVL+++ PL
Sbjct: 241 ITRTVKEIK---------------PGEDMICQLYISKPFIIDGFKFDLRIYVLMTSCDPL 285
Query: 962 RCYMYKLGFCRF 997
R ++Y G RF
Sbjct: 286 RIFVYNEGLARF 297
>ref|NP_001069261.1| probable tubulin polyglutamylase TTLL2 [Bos taurus].
Length = 528
Score = 102 bits (255), Expect = 4e-22
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 10/222 (4%)
Frame = +2
Query: 362 DIEKSVLINNFEKRGWVQVTESE----DWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHF 529
++ +SVL+ +RGW + + E DWN YW + + F + + Q +NH
Sbjct: 24 EVVQSVLL----ERGWSKFDQQEQNMEDWNLYWRT-----SSFRMAEHVNVKPWQCLNHH 74
Query: 530 PNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVE 709
P LTRKDL+ K+++ + G+PL E F+P T+++P DY+ FV
Sbjct: 75 PGTTRLTRKDLLAKHLQHMERLY---GAPLYE-----------FLPPTFVMPHDYSKFVA 120
Query: 710 EFRKSPS------STWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYV 871
E+ K S WI KP ++G+GI + + D K F + +
Sbjct: 121 EYFKEKQVLDAKLSYWICKPAELSRGRGIIIFS----------DIKNLIFA-----DTCI 165
Query: 872 ISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
I YI NPLL+G K DLR+YV V+ ++PL Y+Y+ G RF
Sbjct: 166 IQKYICNPLLVGRYKCDLRVYVCVTGFKPLTIYIYQEGLVRF 207
>ref|NP_001192637.1| tubulin polyglutamylase TTLL4 [Bos taurus].
Length = 1199
Score = 90.9 bits (224), Expect = 2e-18
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 4/227 (1%)
Frame = +2
Query: 329 WTMAGKVKWVTDIEKSVLINNFEKRGWVQVTE-SEDWNFYW---MSVQTIRNVFSVETGY 496
W ++W ++ R ++++ ++DW W M + R++
Sbjct: 600 WEQRKLLRWKMSTVTPNIVKQTIGRSHFKISKRNDDWLGCWGHHMKSPSFRSI------- 652
Query: 497 RLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTY 676
+ Q +NHFP +++ RKD + +N+ R + K+ F P ++
Sbjct: 653 --QEHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKE--------------FSFFPQSF 696
Query: 677 MLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSP 856
+LP D L + + WI+KP A+G GI +I+K SQ+ K
Sbjct: 697 ILPQDAKLLRKAWESGSRQKWIVKPPASARGIGIQVIHKWSQLPK--------------- 741
Query: 857 KEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
+ ++ Y+ P LI G KFDLR+YV V++Y PLR Y++ G RF
Sbjct: 742 RRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRF 788
>ref|XP_002685620.1| PREDICTED: CG3964-like [Bos taurus].
Length = 1199
Score = 90.9 bits (224), Expect = 2e-18
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 4/227 (1%)
Frame = +2
Query: 329 WTMAGKVKWVTDIEKSVLINNFEKRGWVQVTE-SEDWNFYW---MSVQTIRNVFSVETGY 496
W ++W ++ R ++++ ++DW W M + R++
Sbjct: 600 WEQRKLLRWKMSTVTPNIVKQTIGRSHFKISKRNDDWLGCWGHHMKSPSFRSI------- 652
Query: 497 RLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTY 676
+ Q +NHFP +++ RKD + +N+ R + K+ F P ++
Sbjct: 653 --QEHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKE--------------FSFFPQSF 696
Query: 677 MLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSP 856
+LP D L + + WI+KP A+G GI +I+K SQ+ K
Sbjct: 697 ILPQDAKLLRKAWESGSRQKWIVKPPASARGIGIQVIHKWSQLPK--------------- 741
Query: 857 KEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
+ ++ Y+ P LI G KFDLR+YV V++Y PLR Y++ G RF
Sbjct: 742 RRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRF 788
>ref|NP_001179872.1| tubulin polyglutamylase TTLL7 [Bos taurus].
Length = 887
Score = 76.6 bits (187), Expect = 3e-14
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 4/195 (2%)
Frame = +2
Query: 422 ESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELE 601
E E N W + E L + Q +NHFP E+ RKD + +N+ + K
Sbjct: 68 EDETSNLIWCD-----SAVQQEKIAELQNYQRINHFPGMGEICRKDFLARNMTKMIKS-- 120
Query: 602 KEGSPLAEKDESGKYLYLDFVPVTYMLPADY----NLFVEEFRKSPSSTWIMKPCGRAQG 769
+ L FVP T++ PA+Y N E +K T+I+KP A G
Sbjct: 121 -------------RPLDYAFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVKPANGAMG 167
Query: 770 KGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVST 949
GI LI ++ ++ ++ YI P L+ G KFDLR+Y+LV++
Sbjct: 168 HGISLIRNGDKLPS---------------QDHLIVQEYIEKPFLMEGYKFDLRIYILVTS 212
Query: 950 YRPLRCYMYKLGFCR 994
PL+ ++Y G R
Sbjct: 213 CDPLKIFLYHDGLVR 227
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,825,275
Number of extensions: 1110914
Number of successful extensions: 3566
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3532
Number of HSP's successfully gapped: 13
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013669
(998 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355369.1| PREDICTED: probable tubulin polyglutamylase ... 455 e-128
Alignment gi|XP_003134437.2| PREDICTED: probable tubulin polyglutamylase ... 106 2e-23
Alignment gi|XP_003361461.1| PREDICTED: probable tubulin polyglutamylase ... 70 2e-12
Alignment gi|XP_003127546.2| PREDICTED: hypothetical protein LOC100524811... 66 3e-11
Alignment gi|XP_003126835.2| PREDICTED: protein monoglycylase TTLL8-like,... 55 5e-08
Alignment gi|XP_003358560.1| PREDICTED: tubulin monoglycylase TTLL3-like ... 55 6e-08
Alignment gi|XP_003353685.1| PREDICTED: tubulin polyglutamylase TTLL11-li... 54 1e-07
Alignment gi|XP_003355368.1| PREDICTED: tubulin--tyrosine ligase-like pro... 52 7e-07
Alignment gi|XP_003126032.1| PREDICTED: tubulin--tyrosine ligase-like pro... 50 3e-06
>ref|XP_003355369.1| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Sus
scrofa].
Length = 351
Score = 455 bits (1170), Expect = e-128
Identities = 220/221 (99%), Positives = 220/221 (99%)
Frame = +2
Query: 335 MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 514
MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ
Sbjct: 1 MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 60
Query: 515 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 694
IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY
Sbjct: 61 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 120
Query: 695 NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 874
NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI
Sbjct: 121 NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 180
Query: 875 SLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
SLYI NPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF
Sbjct: 181 SLYISNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 221
>ref|XP_003134437.2| PREDICTED: probable tubulin polyglutamylase TTLL9-like [Sus
scrofa].
Length = 142
Score = 106 bits (264), Expect = 2e-23
Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Frame = +2
Query: 431 DWNFYWMSVQTIRNVFSVETGYRLSDDQI-VNHFPNHYELTRKDLMVKNIKRYRKELEKE 607
+W+FYW V +R F + D+ + ++HF NHYELTRK+ MVKN+KR+RK+LE+E
Sbjct: 41 EWDFYWCDVSWLRENFD----HTYMDEHVRISHFRNHYELTRKNYMVKNLKRFRKQLERE 96
Query: 608 GSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKP 751
A K E+ K DF P T+ +P +Y+LFVEEFRK+P TWIMKP
Sbjct: 97 ----AGKLEAAK---CDFFPKTFEMPCEYHLFVEEFRKNPGITWIMKP 137
>ref|XP_003361461.1| PREDICTED: probable tubulin polyglutamylase TTLL9-like, partial
[Sus scrofa].
Length = 323
Score = 70.1 bits (170), Expect = 2e-12
Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +2
Query: 758 RAQGKGIFLINKLSQIKKWSRDSKTSSFVSQS-PKEAYVISLYIGNPLLIGGRKFDLRLY 934
R+QGKGIFL +L I W +D+++S P E YV YI NP LIGGRKFDLR+Y
Sbjct: 78 RSQGKGIFLFRRLKDIMDWRKDTRSSEDQKDEIPVENYVAQRYIENPYLIGGRKFDLRVY 137
Query: 935 VLVSTYRP 958
VLV + P
Sbjct: 138 VLVMSDSP 145
>ref|XP_003127546.2| PREDICTED: hypothetical protein LOC100524811 [Sus scrofa].
Length = 912
Score = 65.9 bits (159), Expect = 3e-11
Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 33/228 (14%)
Frame = +2
Query: 374 SVLINNFEKRGWVQVTES--EDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYEL 547
S++ + + +GW ++ ++ ED+ W V++ S G +Q++ PN+ L
Sbjct: 198 SIISSYCKSKGWQRIQDARREDYQLKWCEVKSRDTYCSFREG-----EQLLFQLPNNKLL 252
Query: 548 TRKDLMVKNIKRYRKELEKEGSPL-AEKDESGKYLYLDF----------------VPVTY 676
T K ++ ++ + + K P +D S K + L + +
Sbjct: 253 TTKIGLLSALRERARVVSKTSKPAPCPQDRSRKDMTLALEKPVWTSPGNLGPQRVLKMEE 312
Query: 677 MLPADYNLFVEEFRKS------PSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSS 838
P Y L + E R++ + WI KP QGKGIFL+ SQ + + +KT
Sbjct: 313 FFPETYRLDIREEREAFFTLFDETQIWICKPTASNQGKGIFLLR--SQEEAAALQAKTQR 370
Query: 839 FVSQS--------PKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRP 958
+A ++ YI NPLL+ G+KFD+R Y+L++ P
Sbjct: 371 LEDDPVYRKMPFRAPQARIVQRYIQNPLLLDGKKFDVRSYLLIACAVP 418
>ref|XP_003126835.2| PREDICTED: protein monoglycylase TTLL8-like, partial [Sus scrofa].
Length = 929
Score = 55.5 bits (132), Expect = 5e-08
Identities = 27/87 (31%), Positives = 49/87 (56%)
Frame = +2
Query: 737 WIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRK 916
WI+KP +++G+ I +N++ +I + + ++ + +V+ YI PLLI K
Sbjct: 327 WILKPAAKSRGRDIVCMNRVEEILELVAADRL-----EAREHKWVVQKYIETPLLIYDTK 381
Query: 917 FDLRLYVLVSTYRPLRCYMYKLGFCRF 997
FD+R + LV+ + PL + YK + RF
Sbjct: 382 FDIRQWFLVTDWNPLTIWFYKESYLRF 408
>ref|XP_003358560.1| PREDICTED: tubulin monoglycylase TTLL3-like [Sus scrofa].
Length = 860
Score = 55.1 bits (131), Expect = 6e-08
Identities = 30/87 (34%), Positives = 47/87 (54%)
Frame = +2
Query: 737 WIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRK 916
WI+KP +++G+GI ++ L ++ K S +V+ YI PLLI G K
Sbjct: 460 WIVKPGAKSRGRGIVCMDHLEEMLKL-----VDSNPMMMKDGKWVVQKYIERPLLIFGTK 514
Query: 917 FDLRLYVLVSTYRPLRCYMYKLGFCRF 997
FDLR + LV+ + PL + Y+ + RF
Sbjct: 515 FDLRQWFLVTDWNPLTVWFYRDSYIRF 541
>ref|XP_003353685.1| PREDICTED: tubulin polyglutamylase TTLL11-like [Sus scrofa].
Length = 436
Score = 53.9 bits (128), Expect = 1e-07
Identities = 34/88 (38%), Positives = 43/88 (48%)
Frame = +2
Query: 734 TWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGR 913
T+I+KP QG GI+LI S I+ V+ YI PLLI
Sbjct: 111 TFIVKPDSGCQGDGIYLIKDPSDIR----------LAGTLQSRPAVVQEYICKPLLIDKL 160
Query: 914 KFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
KFD+RLYVL+ + PL Y+ K G RF
Sbjct: 161 KFDIRLYVLLKSLDPLEIYIAKDGLSRF 188
>ref|XP_003355368.1| PREDICTED: tubulin--tyrosine ligase-like protein 12 [Sus scrofa].
Length = 652
Score = 51.6 bits (122), Expect = 7e-07
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 12/179 (6%)
Frame = +2
Query: 497 RLSDDQ---IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVP 667
RLS ++ ++N FP LT KD + +R G P ++P
Sbjct: 354 RLSQERPTVLLNQFPCENLLTVKDCLASIARRV-------GGPEGPA----------WLP 396
Query: 668 VTYMLPADYNLFVEEF----RKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTS 835
T+ L + FV F R+ + WI KP A+ + L + + R+S
Sbjct: 397 RTFNLRTELPQFVSYFQQRERRGEDNHWICKPWNLARSLDTHITKSLHSVIR-HRES--- 452
Query: 836 SFVSQSPKEAYVISLYIGNPLL-----IGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
SPK V+S YI +P+L +GG KFD+R VL+ + RPL+ ++Y + + RF
Sbjct: 453 -----SPK---VVSKYIESPVLFLREDVGGVKFDIRYVVLLRSVRPLKLFVYDVFWLRF 503
>ref|XP_003126032.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Sus
scrofa].
Length = 734
Score = 49.7 bits (117), Expect = 3e-06
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Frame = +2
Query: 659 FVPVTYMLPADYNLFVEEF----RKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDS 826
++P T+ L + FV F R+ + WI KP A+ + L + + R+S
Sbjct: 476 WLPRTFNLRTELPQFVSYFQQRERRGEDNHWICKPWNLARSLDTHITKSLHSVIR-HRES 534
Query: 827 KTSSFVSQSPKEAYVISLYIGNPLL-----IGGRKFDLRLYVLVSTYRPLRCYMYKLGFC 991
SPK V+S YI +P+L +GG KFD+R VL+ + RPL+ ++Y + +
Sbjct: 535 --------SPK---VVSKYIESPVLFLREDVGGVKFDIRYVVLLRSVRPLKLFVYDVFWL 583
Query: 992 RF 997
RF
Sbjct: 584 RF 585
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,010,451
Number of extensions: 802016
Number of successful extensions: 2203
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2191
Number of HSP's successfully gapped: 9
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013669
(998 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_849200.2| probable tubulin polyglutamylase TTLL1 [Mus mus... 446 e-125
Alignment gi|NP_083340.2| probable tubulin polyglutamylase TTLL9 isoform ... 186 2e-47
Alignment gi|NP_001077087.1| probable tubulin polyglutamylase TTLL9 isofo... 186 2e-47
Alignment gi|NP_001074892.2| tubulin polyglutamylase TTLL5 [Mus musculus]. 110 2e-24
Alignment gi|NP_001091737.1| probable tubulin polyglutamylase TTLL2 [Mus ... 105 4e-23
Alignment gi|NP_766387.2| tubulin polyglutamylase TTLL6 [Mus musculus]. 105 5e-23
Alignment gi|NP_808433.2| tubulin polyglutamylase TTLL13 [Mus musculus]. 104 9e-23
Alignment gi|NP_001014974.1| tubulin polyglutamylase TTLL4 [Mus musculus]. 92 5e-19
Alignment gi|NP_083540.1| protein polyglycylase TTLL10 [Mus musculus]. 77 3e-14
Alignment gi|NP_081870.1| tubulin polyglutamylase TTLL7 [Mus musculus]. 76 5e-14
>ref|NP_849200.2| probable tubulin polyglutamylase TTLL1 [Mus musculus].
Length = 423
Score = 446 bits (1146), Expect = e-125
Identities = 213/221 (96%), Positives = 219/221 (99%)
Frame = +2
Query: 335 MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 514
MAG+VKWVTDIEKSVLINNFEKRGW+QVTE+EDWNFYWMSVQTIRNVFSVETGYRLSDDQ
Sbjct: 1 MAGRVKWVTDIEKSVLINNFEKRGWIQVTENEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 60
Query: 515 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 694
IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDE+GKYLYLDFVPVTYMLPADY
Sbjct: 61 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDENGKYLYLDFVPVTYMLPADY 120
Query: 695 NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 874
NLFVEEFRKSPSSTWIMKPCG+AQGKGIFLINKLSQIKKWSRDSKTSSFVSQS KEAYVI
Sbjct: 121 NLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSTKEAYVI 180
Query: 875 SLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
S+YI NPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF
Sbjct: 181 SVYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 221
>ref|NP_083340.2| probable tubulin polyglutamylase TTLL9 isoform 2 [Mus musculus].
Length = 464
Score = 186 bits (472), Expect = 2e-47
Identities = 104/241 (43%), Positives = 138/241 (57%), Gaps = 32/241 (13%)
Frame = +2
Query: 371 KSVLINNF-----EKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQI-VNHFP 532
K+ L+N + GWV+V + +W+FYW V +R F + D+ + ++HF
Sbjct: 29 KTTLMNTLMDVLRHRPGWVEVKDEGEWDFYWCDVSWLRENFD----HTYMDEHVRISHFR 84
Query: 533 NHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEE 712
NHYELTRK+ MVKN+KR+RK LE+E K E+ K DF P T+ +P +Y+LFVEE
Sbjct: 85 NHYELTRKNYMVKNLKRFRKYLERESG----KTEAAK---CDFFPKTFEMPCEYHLFVEE 137
Query: 713 FRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKW-------------------------S 817
FRK+P TWIMKP R+QGKGIFL +L I W S
Sbjct: 138 FRKNPGITWIMKPVARSQGKGIFLFRRLKDIMDWRKGTSGKKPTGVETQPARANMNPSGS 197
Query: 818 RDSKTSSFVSQS-PKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCR 994
D+++S P E YV Y+ NP LIGGRKFDLR+YVLV +Y PLR ++Y+ GF R
Sbjct: 198 HDTRSSDDQKDDLPVENYVAQRYVENPYLIGGRKFDLRVYVLVMSYIPLRAWLYRDGFAR 257
Query: 995 F 997
F
Sbjct: 258 F 258
>ref|NP_001077087.1| probable tubulin polyglutamylase TTLL9 isoform 1 [Mus musculus].
Length = 461
Score = 186 bits (472), Expect = 2e-47
Identities = 104/241 (43%), Positives = 138/241 (57%), Gaps = 32/241 (13%)
Frame = +2
Query: 371 KSVLINNF-----EKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQI-VNHFP 532
K+ L+N + GWV+V + +W+FYW V +R F + D+ + ++HF
Sbjct: 29 KTTLMNTLMDVLRHRPGWVEVKDEGEWDFYWCDVSWLRENFD----HTYMDEHVRISHFR 84
Query: 533 NHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEE 712
NHYELTRK+ MVKN+KR+RK LE+E K E+ K DF P T+ +P +Y+LFVEE
Sbjct: 85 NHYELTRKNYMVKNLKRFRKYLERESG----KTEAAK---CDFFPKTFEMPCEYHLFVEE 137
Query: 713 FRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKW-------------------------S 817
FRK+P TWIMKP R+QGKGIFL +L I W S
Sbjct: 138 FRKNPGITWIMKPVARSQGKGIFLFRRLKDIMDWRKGTSGKKPTGVETQPARANMNPSGS 197
Query: 818 RDSKTSSFVSQS-PKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCR 994
D+++S P E YV Y+ NP LIGGRKFDLR+YVLV +Y PLR ++Y+ GF R
Sbjct: 198 HDTRSSDDQKDDLPVENYVAQRYVENPYLIGGRKFDLRVYVLVMSYIPLRAWLYRDGFAR 257
Query: 995 F 997
F
Sbjct: 258 F 258
>ref|NP_001074892.2| tubulin polyglutamylase TTLL5 [Mus musculus].
Length = 1328
Score = 110 bits (275), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +2
Query: 425 SEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEK 604
S D+N W F + T LS+ Q VNHFP YELTRKD + KNI R +
Sbjct: 93 STDYNLMWTGSHL--KPFLLRT---LSEAQKVNHFPRSYELTRKDRLYKNIIRMQ----- 142
Query: 605 EGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFL 784
+ + +P T++LPA+Y F + K WI+KP ++G+G++L
Sbjct: 143 ---------HTHGFKAFHILPQTFLLPAEYAEFCNSYSKD-RGPWIVKPVASSRGRGVYL 192
Query: 785 INKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLR 964
IN +QI S +E ++S YI NPLLI KFD+RLYVLV++Y PL
Sbjct: 193 INNPNQI---------------SLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLV 237
Query: 965 CYMYKLGFCRF 997
Y+Y+ G RF
Sbjct: 238 IYLYEEGLARF 248
>ref|NP_001091737.1| probable tubulin polyglutamylase TTLL2 [Mus musculus].
Length = 540
Score = 105 bits (263), Expect = 4e-23
Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 10/210 (4%)
Frame = +2
Query: 398 KRGWVQVTES----EDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLM 565
+RGW + E EDWN YW S R + + Q +NH P LTRKD +
Sbjct: 62 ERGWDKFDEQRQDVEDWNLYWRSSSFRRAEY-----VNVKPWQRLNHHPGMTNLTRKDCL 116
Query: 566 VKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPS----- 730
K++ R R G+ LY +F P+T+++P DY FV ++ K
Sbjct: 117 AKHLARMRSRY-------------GESLY-EFTPLTFIMPTDYTKFVAKYFKEKQDLGTK 162
Query: 731 -STWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIG 907
S WI KP ++G+GI + + + + K YV+ YI NPLL+G
Sbjct: 163 PSYWICKPAELSRGRGIIIFSDIRDLMF---------------KGTYVVQKYICNPLLVG 207
Query: 908 GRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
K DLR+YV ++ ++PL YMY+ G RF
Sbjct: 208 RYKCDLRIYVCITGFKPLTIYMYQEGLVRF 237
>ref|NP_766387.2| tubulin polyglutamylase TTLL6 [Mus musculus].
Length = 822
Score = 105 bits (262), Expect = 5e-23
Identities = 64/201 (31%), Positives = 93/201 (46%)
Frame = +2
Query: 395 EKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKN 574
++ G + +++DW YW S+E + Q +NHFP E+ RKDL+ +N
Sbjct: 77 QQYGLREAGDNDDWTLYWTDYSV-----SLERVMEMKSYQKINHFPGMSEICRKDLLARN 131
Query: 575 IKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPC 754
+ R K K+ F P T+ LPAD+ R + T+I KP
Sbjct: 132 MSRMLKLFPKD---------------FHFFPRTWCLPADWGDLQTYSRTRKNKTYICKPD 176
Query: 755 GRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLY 934
QG+GIF+ + +IK P E + LYI P +I G KFDLR+Y
Sbjct: 177 SGCQGRGIFITRSVKEIK---------------PGEDMICQLYISKPFIIDGFKFDLRVY 221
Query: 935 VLVSTYRPLRCYMYKLGFCRF 997
VLV++ PLR ++Y G RF
Sbjct: 222 VLVTSCDPLRVFVYNEGLARF 242
>ref|NP_808433.2| tubulin polyglutamylase TTLL13 [Mus musculus].
Length = 804
Score = 104 bits (260), Expect = 9e-23
Identities = 66/198 (33%), Positives = 92/198 (46%)
Frame = +2
Query: 404 GWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKR 583
G +V E E+W YW S+E + Q +NHFP E+ RKDL+ +N+ R
Sbjct: 108 GLKEVGEDEEWTVYWTDCSV-----SLERVMDMKRFQKINHFPGMTEICRKDLLARNLNR 162
Query: 584 YRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRA 763
+K E + P T+ LPADY F R+ + T+I KP
Sbjct: 163 MQKLYPTE---------------YNIFPRTWCLPADYGDFQAYGRQRKTRTYICKPDSGC 207
Query: 764 QGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLV 943
QG+GIF+ +IK P E + YI P LI G KFD+R+YVL+
Sbjct: 208 QGRGIFITRTPKEIK---------------PGEHMICQQYITKPFLIDGFKFDMRIYVLI 252
Query: 944 STYRPLRCYMYKLGFCRF 997
++ PLR +MY+ G RF
Sbjct: 253 TSCDPLRIFMYEEGLARF 270
>ref|NP_001014974.1| tubulin polyglutamylase TTLL4 [Mus musculus].
Length = 1193
Score = 92.4 bits (228), Expect = 5e-19
Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Frame = +2
Query: 491 GYR-LSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVP 667
G+R + + Q +NHFP +++ RKD + +N+ R + K+ F P
Sbjct: 644 GFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKE--------------FSFFP 689
Query: 668 VTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVS 847
+++LP D L + + S WI+KP A+G GI +I+K SQ+ K
Sbjct: 690 QSFILPQDSKLLRKAWESSSRQKWIVKPPASARGIGIQVIHKWSQLPK------------ 737
Query: 848 QSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
+ ++ Y+ P LI G KFDLR+YV V++Y PLR Y++ G RF
Sbjct: 738 ---RRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRF 784
>ref|NP_083540.1| protein polyglycylase TTLL10 [Mus musculus].
Length = 675
Score = 76.6 bits (187), Expect = 3e-14
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 17/212 (8%)
Frame = +2
Query: 374 SVLINNFEKRGWVQVTES--EDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYEL 547
S++ N E +GW + +S ED+ W ++ N S G Q++ PN+ L
Sbjct: 153 SIISNYCESKGWQRTQDSHCEDYKLKWCEIKCRDNYCSFREG-----QQLLFQLPNNKLL 207
Query: 548 TRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLP------ADYNLFVE 709
T K ++ ++ + + L K + + ++ +F P TY L A + LF E
Sbjct: 208 TTKIGLLSALREHARTLSK--ARMLPSTQTKVLKMEEFFPETYRLDIRDERQAFFALFDE 265
Query: 710 EFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSP---------KE 862
+ WI KP QGKGIFLI SQ + + +KT S + P +
Sbjct: 266 ------TQMWICKPTASNQGKGIFLIR--SQEEAAALQAKTQS-IEDDPIYRKMPFRAPQ 316
Query: 863 AYVISLYIGNPLLIGGRKFDLRLYVLVSTYRP 958
A V+ Y+ NPLL+ G+KFD+R Y+L++ P
Sbjct: 317 ARVVQRYVQNPLLLDGKKFDVRSYMLIACAMP 348
>ref|NP_081870.1| tubulin polyglutamylase TTLL7 [Mus musculus].
Length = 892
Score = 75.9 bits (185), Expect = 5e-14
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 4/169 (2%)
Frame = +2
Query: 500 LSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYM 679
L + Q +NHFP E+ RKD + +N+ + K + + FVP T++
Sbjct: 89 LQNYQRINHFPGMGEICRKDFLARNMTKMIKSRPMDYT---------------FVPRTWI 133
Query: 680 LPADYNLF---VEEFRKS-PSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVS 847
P++Y F V+E +K T+I+KP A G GI LI ++
Sbjct: 134 FPSEYTQFQNYVKELKKKRKQKTFIVKPANGAMGHGISLIRNGDKVPS------------ 181
Query: 848 QSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCR 994
++ ++ YI P L+ G KFDLR+Y+LV++ PL+ ++Y G R
Sbjct: 182 ---QDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKIFLYHDGLVR 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,197,601
Number of extensions: 870665
Number of successful extensions: 2762
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2721
Number of HSP's successfully gapped: 15
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013669
(998 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036395.1| probable tubulin polyglutamylase TTLL1 [Homo sa... 446 e-125
Alignment gi|NP_001008409.1| probable tubulin polyglutamylase TTLL9 [Homo... 180 2e-45
Alignment gi|NP_055887.3| tubulin polyglutamylase TTLL5 [Homo sapiens]. 110 2e-24
Alignment gi|NP_001124390.1| tubulin polyglutamylase TTLL6 isoform 1 [Hom... 107 1e-23
Alignment gi|NP_114155.4| probable tubulin polyglutamylase TTLL2 [Homo sa... 104 1e-22
Alignment gi|NP_001025135.2| tubulin polyglutamylase TTLL13 [Homo sapiens]. 103 2e-22
Alignment gi|NP_055455.3| tubulin polyglutamylase TTLL4 [Homo sapiens]. 92 7e-19
Alignment gi|NP_078962.4| tubulin polyglutamylase TTLL7 [Homo sapiens]. 78 1e-14
Alignment gi|NP_919228.2| tubulin polyglutamylase TTLL11 isoform b [Homo ... 69 5e-12
Alignment gi|NP_001132914.1| tubulin polyglutamylase TTLL11 isoform a [Ho... 69 5e-12
>ref|NP_036395.1| probable tubulin polyglutamylase TTLL1 [Homo sapiens].
Length = 423
Score = 446 bits (1147), Expect = e-125
Identities = 215/221 (97%), Positives = 218/221 (98%)
Frame = +2
Query: 335 MAGKVKWVTDIEKSVLINNFEKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQ 514
MAGKVKWVTDIEKSVLINNFEKRGWVQVTE+EDWNFYWMSVQTIRNVFSVE GYRLSDDQ
Sbjct: 1 MAGKVKWVTDIEKSVLINNFEKRGWVQVTENEDWNFYWMSVQTIRNVFSVEAGYRLSDDQ 60
Query: 515 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADY 694
IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDE+GKYLYLDFVPVTYMLPADY
Sbjct: 61 IVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDENGKYLYLDFVPVTYMLPADY 120
Query: 695 NLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 874
NLFVEEFRKSPSSTWIMKPCG+AQGKGIFLINKLSQIKKWSRDSKTSSFVSQS KEAYVI
Sbjct: 121 NLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSNKEAYVI 180
Query: 875 SLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
SLYI NPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF
Sbjct: 181 SLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 221
>ref|NP_001008409.1| probable tubulin polyglutamylase TTLL9 [Homo sapiens].
Length = 439
Score = 180 bits (456), Expect = 2e-45
Identities = 95/198 (47%), Positives = 126/198 (63%), Gaps = 7/198 (3%)
Frame = +2
Query: 371 KSVLINNF-----EKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQI-VNHFP 532
K+ L+N + GWV+V + +W+FYW V +R F + D+ + ++HF
Sbjct: 47 KTTLMNTLMDVLRHRPGWVEVKDEGEWDFYWCDVSWLRENFD----HTYMDEHVRISHFR 102
Query: 533 NHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEE 712
NHYELTRK+ MVKN+KR+RK+LE+E L E+ K DF P T+ +P +Y+LFVEE
Sbjct: 103 NHYELTRKNYMVKNLKRFRKQLEREAGKL----EAAK---CDFFPKTFEMPCEYHLFVEE 155
Query: 713 FRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQS-PKEAYVISLYIG 889
FRK+P TWIMKP R+QGKGIFL +L I W +D+++S P E YV YI
Sbjct: 156 FRKNPGITWIMKPVARSQGKGIFLFRRLKDIVDWRKDTRSSDDQKDDIPVENYVAQRYIE 215
Query: 890 NPLLIGGRKFDLRLYVLV 943
NP LIGGRKFDLR+YVLV
Sbjct: 216 NPYLIGGRKFDLRVYVLV 233
>ref|NP_055887.3| tubulin polyglutamylase TTLL5 [Homo sapiens].
Length = 1281
Score = 110 bits (275), Expect = 2e-24
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +2
Query: 425 SEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEK 604
S D+N W F + T LS+ Q VNHFP YELTRKD + KNI R +
Sbjct: 93 STDYNLMWTGSHL--KPFLLRT---LSEAQKVNHFPRSYELTRKDRLYKNIIRMQ----- 142
Query: 605 EGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFL 784
+ + +P T++LPA+Y F + K WI+KP ++G+G++L
Sbjct: 143 ---------HTHGFKAFHILPQTFLLPAEYAEFCNSYSKD-RGPWIVKPVASSRGRGVYL 192
Query: 785 INKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLR 964
IN +QI S +E ++S YI NPLLI KFD+RLYVLV++Y PL
Sbjct: 193 INNPNQI---------------SLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLV 237
Query: 965 CYMYKLGFCRF 997
Y+Y+ G RF
Sbjct: 238 IYLYEEGLARF 248
>ref|NP_001124390.1| tubulin polyglutamylase TTLL6 isoform 1 [Homo sapiens].
Length = 891
Score = 107 bits (268), Expect = 1e-23
Identities = 66/201 (32%), Positives = 93/201 (46%)
Frame = +2
Query: 395 EKRGWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKN 574
++ G+ + E +DW YW S+E + Q +NHFP E+ RKDL+ +N
Sbjct: 126 QQYGFREGGEDDDWTLYWTDYSV-----SLERVMEMKSYQKINHFPGMSEICRKDLLARN 180
Query: 575 IKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPC 754
+ R K K+ F P T+ LPAD+ R + T+I KP
Sbjct: 181 MSRMLKMFPKD---------------FRFFPRTWCLPADWGDLQTYSRSRKNKTYICKPD 225
Query: 755 GRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLY 934
QGKGIF+ + +IK P E + LYI P +I G KFDLR+Y
Sbjct: 226 SGCQGKGIFITRTVKEIK---------------PGEDMICQLYISKPFIIDGFKFDLRIY 270
Query: 935 VLVSTYRPLRCYMYKLGFCRF 997
VLV++ PLR ++Y G RF
Sbjct: 271 VLVTSCDPLRIFVYNEGLARF 291
>ref|NP_114155.4| probable tubulin polyglutamylase TTLL2 [Homo sapiens].
Length = 592
Score = 104 bits (260), Expect = 1e-22
Identities = 72/221 (32%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Frame = +2
Query: 365 IEKSVLINNFEKRGW----VQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFP 532
+ +SVL+ +RGW Q +EDWN YW + + F + + Q +NH P
Sbjct: 98 VVQSVLL----ERGWNKFDKQEQNAEDWNLYWRT-----SSFRMTEHNSVKPWQQLNHHP 148
Query: 533 NHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEE 712
+LTRKD + K++K R+ G LY F+P+T+++P DY FV E
Sbjct: 149 GTTKLTRKDCLAKHLKHMRRMY-------------GTSLY-QFIPLTFVMPNDYTKFVAE 194
Query: 713 FRK------SPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVI 874
+ + + S WI KP ++G+GI + + D K F + Y++
Sbjct: 195 YFQERQMLGTKHSYWICKPAELSRGRGILIFS----------DFKDFIF-----DDMYIV 239
Query: 875 SLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
YI NPLLIG K DLR+YV V+ ++PL Y+Y+ G RF
Sbjct: 240 QKYISNPLLIGRYKCDLRIYVCVTGFKPLTIYVYQEGLVRF 280
>ref|NP_001025135.2| tubulin polyglutamylase TTLL13 [Homo sapiens].
Length = 459
Score = 103 bits (258), Expect = 2e-22
Identities = 66/198 (33%), Positives = 91/198 (45%)
Frame = +2
Query: 404 GWVQVTESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKR 583
G +V E E+W YW S+E + Q +NHFP E+ RKDL+ +N+ R
Sbjct: 108 GLKEVGEDEEWTLYWTDCAV-----SLERVMDMKRFQKINHFPGMTEICRKDLLARNLNR 162
Query: 584 YRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGRA 763
K E + P T+ LPADY F R+ + T+I KP
Sbjct: 163 MYKLYPSE---------------YNIFPRTWCLPADYGDFQSYGRQRKARTYICKPDSGC 207
Query: 764 QGKGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLV 943
QG+GIF+ +IK P E + YI PLLI G KFD+R+YVL+
Sbjct: 208 QGRGIFITRNPREIK---------------PGEHMICQQYISKPLLIDGFKFDMRVYVLI 252
Query: 944 STYRPLRCYMYKLGFCRF 997
++ PLR + Y+ G RF
Sbjct: 253 TSCDPLRIFTYEEGLARF 270
>ref|NP_055455.3| tubulin polyglutamylase TTLL4 [Homo sapiens].
Length = 1199
Score = 92.0 bits (227), Expect = 7e-19
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 4/227 (1%)
Frame = +2
Query: 329 WTMAGKVKWVTDIEKSVLINNFEKRGWVQVTE-SEDWNFYW---MSVQTIRNVFSVETGY 496
W ++W ++ R ++++ ++DW W M + R++
Sbjct: 601 WEQRKLLRWKMSTVTPNIVKQTIGRSHFKISKRNDDWLGCWGHHMKSPSFRSI------- 653
Query: 497 RLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTY 676
+ Q +NHFP +++ RKD + +N+ R + K+ F P ++
Sbjct: 654 --REHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKE--------------FSFFPQSF 697
Query: 677 MLPADYNLFVEEFRKSPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSP 856
+LP D L + + S WI+KP A+G GI +I+K SQ+ K
Sbjct: 698 ILPQDAKLLRKAWESSSRQKWIVKPPASARGIGIQVIHKWSQLPK--------------- 742
Query: 857 KEAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
+ ++ Y+ P LI G KFDLR+YV V++Y PLR Y++ G RF
Sbjct: 743 RRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRF 789
>ref|NP_078962.4| tubulin polyglutamylase TTLL7 [Homo sapiens].
Length = 887
Score = 78.2 bits (191), Expect = 1e-14
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Frame = +2
Query: 422 ESEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELE 601
E E N W + S L + Q +NHFP E+ RKD + +N+ + K
Sbjct: 68 EDETSNLIWCDSAVQQEKIS-----ELQNYQRINHFPGMGEICRKDFLARNMTKMIKS-- 120
Query: 602 KEGSPLAEKDESGKYLYLDFVPVTYMLPADYNLF---VEEFRKS-PSSTWIMKPCGRAQG 769
+ L FVP T++ PA+Y F V+E +K T+I+KP A G
Sbjct: 121 -------------RPLDYTFVPRTWIFPAEYTQFQNYVKELKKKRKQKTFIVKPANGAMG 167
Query: 770 KGIFLINKLSQIKKWSRDSKTSSFVSQSPKEAYVISLYIGNPLLIGGRKFDLRLYVLVST 949
GI LI ++ ++ ++ YI P L+ G KFDLR+Y+LV++
Sbjct: 168 HGISLIRNGDKLPS---------------QDHLIVQEYIEKPFLMEGYKFDLRIYILVTS 212
Query: 950 YRPLRCYMYKLGFCR 994
PL+ ++Y G R
Sbjct: 213 CDPLKIFLYHDGLVR 227
>ref|NP_919228.2| tubulin polyglutamylase TTLL11 isoform b [Homo sapiens].
Length = 538
Score = 69.3 bits (168), Expect = 5e-12
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Frame = +2
Query: 518 VNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYN 697
VN FP E+ RK + + ++ + +E +F P +++LP ++
Sbjct: 272 VNKFPGMTEMVRKITLSRAVRTMQNLFPEE---------------YNFYPRSWILPDEFQ 316
Query: 698 LFVEEFRK------SPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPK 859
LFV + + S T+I+KP G QG GI+LI S I+
Sbjct: 317 LFVAQVQMVKDDDPSWKPTFIVKPDGGCQGDGIYLIKDPSDIR----------LAGTLQS 366
Query: 860 EAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
V+ YI PLLI KFD+RLYVL+ + PL Y+ K G RF
Sbjct: 367 RPAVVQEYICKPLLIDKLKFDIRLYVLLKSLDPLEIYIAKDGLSRF 412
>ref|NP_001132914.1| tubulin polyglutamylase TTLL11 isoform a [Homo sapiens].
Length = 800
Score = 69.3 bits (168), Expect = 5e-12
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Frame = +2
Query: 518 VNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDESGKYLYLDFVPVTYMLPADYN 697
VN FP E+ RK + + ++ + +E +F P +++LP ++
Sbjct: 272 VNKFPGMTEMVRKITLSRAVRTMQNLFPEE---------------YNFYPRSWILPDEFQ 316
Query: 698 LFVEEFRK------SPSSTWIMKPCGRAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSPK 859
LFV + + S T+I+KP G QG GI+LI S I+
Sbjct: 317 LFVAQVQMVKDDDPSWKPTFIVKPDGGCQGDGIYLIKDPSDIR----------LAGTLQS 366
Query: 860 EAYVISLYIGNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRF 997
V+ YI PLLI KFD+RLYVL+ + PL Y+ K G RF
Sbjct: 367 RPAVVQEYICKPLLIDKLKFDIRLYVLLKSLDPLEIYIAKDGLSRF 412
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,295,958
Number of extensions: 1053060
Number of successful extensions: 3379
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3346
Number of HSP's successfully gapped: 16
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013669
(998 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 416 e-114
>Sscrofa_Chr05
|| Length = 111506441
Score = 416 bits (210), Expect = e-114
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 447 ggatgagcgtgcaaaccatccgcaatgttttcagtgtggaaactggctatcggctctcgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3231073 ggatgagcgtgcaaaccatccgcaatgttttcagtgtggaaactggctatcggctctcgg 3231132
Query: 507 acgaccaaatcgtcaaccatttcccaaaccactatgagctgacgcggaaggatctgatgg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3231133 acgaccaaatcgtcaaccatttcccaaaccactatgagctgacgcggaaggatctgatgg 3231192
Query: 567 tgaagaacatcaagcggtaccggaaggagctggagaaggaagggagccccctggcggaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3231193 tgaagaacatcaagcggtaccggaaggagctggagaaggaagggagccccctggcggaga 3231252
Query: 627 aggacgaaagtgggaaatacctctacctgg 656
||||||||||||||||||||||||||||||
Sbjct: 3231253 aggacgaaagtgggaaatacctctacctgg 3231282
Score = 357 bits (180), Expect = 8e-96
Identities = 183/184 (99%)
Strand = Plus / Plus
Query: 656 gactttgtccctgtcacctacatgctgcccgccgactacaacctgtttgtggaggagttc 715
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233266 gactttgtcccggtcacctacatgctgcccgccgactacaacctgtttgtggaggagttc 3233325
Query: 716 cggaaaagcccctccagcacctggatcatgaaaccttgtggcagagcccagggcaagggt 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233326 cggaaaagcccctccagcacctggatcatgaaaccttgtggcagagcccagggcaagggt 3233385
Query: 776 atctttctgatcaacaagctctcgcagatcaaaaagtggtcccgggacagcaaaacctct 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233386 atctttctgatcaacaagctctcgcagatcaaaaagtggtcccgggacagcaaaacctct 3233445
Query: 836 tcgt 839
||||
Sbjct: 3233446 tcgt 3233449
Score = 258 bits (130), Expect = 5e-66
Identities = 136/138 (98%)
Strand = Plus / Plus
Query: 838 gttcgtgtctcagtcgcccaaggaggcctacgtgatctctctgtacatcggcaacccgct 897
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3234282 gttcgtgtctcagtcgcccaaggaggcctacgtgatctctctgtacatcagcaacccgct 3234341
Query: 898 cctcatcggcggcaggaagttcgacctgcgcttgtatgtcctggtgtccacgtaccgccc 957
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3234342 cctcatcggcggcaggaagttcgacctgcgcttgtacgtcctggtgtccacgtaccgccc 3234401
Query: 958 cctgcgctgctacatgta 975
||||||||||||||||||
Sbjct: 3234402 cctgcgctgctacatgta 3234419
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 330 ggacgatggcgggaaaagtgaaatgggtcactgacatcgagaagtcggtgctgatcaaca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3227127 ggacgatggcgggaaaagtgaaatgggtcactgacatcgagaagtcggtgctgatcaaca 3227186
Query: 390 acttcgagaagcgaggatgggtgcaggtgacggagagcgaggactggaatttctactgg 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3227187 acttcgagaagcgaggatgggtgcaggtgacggagagcgaggactggaatttctactgg 3227245
Score = 176 bits (89), Expect = 2e-41
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 gttgccggggcgccgccccggaagtagagcgcggagggtgggttcgcttgatagcgggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216125 gttgccggggcgccgccccggaagtagagcgcggagggtgggttcgcttgatagcgggcc 3216184
Query: 61 gcgtcctcccgcaggagccggagtggagctgga 93
| |||||||||||||||||||||||||||||||
Sbjct: 3216185 gagtcctcccgcaggagccggagtggagctgga 3216217
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 198 aggtaagaaaccgaggcaagagtgggtgaaactgaagagcgattggacgttgccgttggc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3223022 aggtaagaaaccgaggcaagagtgggtgaaactgaagagcgattggacgttgccgttggc 3223081
Query: 258 cccagacgtacctatg 273
||||||||||||||||
Sbjct: 3223082 cccagacgtacctatg 3223097
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 125 tgctccgcgctcctgggcgcccctccgggctggacgcccacag 167
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216249 tgctccgcgctcctgggcgcccctccgggctggacgcccacag 3216291
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 166 agaaggacgtcgcaggaagacaatctgccatcaggta 202
|||||||||||||||||||||||||||||||||||||
Sbjct: 3220488 agaaggacgtcgcaggaagacaatctgccatcaggta 3220524
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,977,102
Number of extensions: 107
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 8
Length of query: 998
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 977
Effective length of database: 2,808,413,156
Effective search space: 2743819653412
Effective search space used: 2743819653412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)