Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013670
(1039 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536125.2| PREDICTED: similar to Mg87 protein [Canis famil... 304 8e-83
Alignment gi|XP_545718.2| PREDICTED: similar to MOCO sulphurase C-termina... 283 2e-76
Alignment gi|XP_547604.2| PREDICTED: similar to molybdenum cofactor sulfu... 84 3e-16
>ref|XP_536125.2| PREDICTED: similar to Mg87 protein [Canis familiaris].
Length = 436
Score = 304 bits (779), Expect = 8e-83
Identities = 142/176 (80%), Positives = 163/176 (92%)
Frame = +2
Query: 512 RMFGLDTQGRDCGDEAAQWFTSFLKTEAYRLVQFEKNLKGRRSKKIFSSVAQDYEVAYPD 691
R+FG+D +GRDCGDEAAQWFTSFLKTEA+RLVQFEK++KGR SK+IFS V +Y+VAYPD
Sbjct: 249 RLFGMDIKGRDCGDEAAQWFTSFLKTEAFRLVQFEKHMKGRPSKEIFSPVVPNYQVAYPD 308
Query: 692 CSPILVISEASLTDLNTRMEKKVKMENFRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLA 871
CSPI+++SEASL DLNTR+EKKVKM+ FRPNI VTGC AFEEDTW +LLIG+V+MKKVL+
Sbjct: 309 CSPIMILSEASLADLNTRLEKKVKMDQFRPNIVVTGCDAFEEDTWDELLIGNVEMKKVLS 368
Query: 872 CGRCILTTVDPDTGVIDRKEPLETLKSYRLCDPSEKPIYKSAPLLGIYYSVEKIGN 1039
C RCILTTVDPDTG+IDRKEPLETLKSYRLCDPSEK IYKS+PL GIYYSVEKIG+
Sbjct: 369 CPRCILTTVDPDTGIIDRKEPLETLKSYRLCDPSEKQIYKSSPLFGIYYSVEKIGS 424
>ref|XP_545718.2| PREDICTED: similar to MOCO sulphurase C-terminal domain containing 1
[Canis familiaris].
Length = 412
Score = 283 bits (723), Expect = 2e-76
Identities = 134/232 (57%), Positives = 175/232 (75%)
Frame = +2
Query: 341 FWTVIKEDGHVVTARQEHRLVLVSITHDDNCLVLRAPGMDQLVLPIKVPSSNRLHNCRMF 520
FW VI E G++VTARQE RLVL+S+T + + L L A L+LPIK P++N ++ CR+
Sbjct: 168 FWLVINEKGNMVTARQEPRLVLISLTCEGDVLTLSAAYTKDLLLPIKTPTTNAVYKCRVH 227
Query: 521 GLDTQGRDCGDEAAQWFTSFLKTEAYRLVQFEKNLKGRRSKKIFSSVAQDYEVAYPDCSP 700
GL+ +GRDCG+ AAQW TSFLKT+ YRLV FE +L+ R ++ ++AY D SP
Sbjct: 228 GLEVEGRDCGEAAAQWITSFLKTQPYRLVHFEPHLRPRYPHQMMDVFQPTDQIAYADASP 287
Query: 701 ILVISEASLTDLNTRMEKKVKMENFRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGR 880
LV+SEASL DLN+R+EKKVKM NFRP+I ++GC A+ ED+W ++LIGDV +K+V+AC R
Sbjct: 288 FLVLSEASLADLNSRLEKKVKMTNFRPSIVISGCDAYAEDSWDEILIGDVILKRVMACSR 347
Query: 881 CILTTVDPDTGVIDRKEPLETLKSYRLCDPSEKPIYKSAPLLGIYYSVEKIG 1036
CILTTVDPDTGV+ KEPLETLKSYRLCDPSE+ +Y +PL G Y+ +E G
Sbjct: 348 CILTTVDPDTGVMSGKEPLETLKSYRLCDPSEQKLYGKSPLFGQYFVLENPG 399
>ref|XP_547604.2| PREDICTED: similar to molybdenum cofactor sulfurase [Canis
familiaris].
Length = 858
Score = 83.6 bits (205), Expect = 3e-16
Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 15/241 (6%)
Frame = +2
Query: 236 VARLWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVS- 412
+ L+LYP+KSC V+ GL + DR W V+ +G ++ +QE RL L+
Sbjct: 562 ITNLYLYPIKSCAAFEVTTWPLGNQGL----LYDRSWMVVNHNGVCLSQKQEPRLCLIQP 617
Query: 413 -ITHDDNCLVLRAPGMDQLVLPIKVPSSN-RLHNCRMFGLDTQGRDCGDEAAQWFTSFLK 586
I +VL+A GM+ + +P++ +++ ++ +CG++ + W + F
Sbjct: 618 FIDLQQKVMVLKAKGMEPIEVPLEEDGEQAQIYQSKVCADRVNTYNCGEKISSWLSRFFG 677
Query: 587 TEAYRLVQFEKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRMEK---- 754
+ Q K + + + ++ + + L+I+ +S+ +L ++
Sbjct: 678 RPCQLIKQSSKFQRSAKKQGKDQPAGTTASLSLVNEAQYLLINRSSVLELQQQLNASDEN 737
Query: 755 --------KVKMENFRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPDT 910
K + FR NI G AFEE+ W ++ IG ++ + C RC + +D T
Sbjct: 738 GKEELFPMKDLISRFRANIITNGTRAFEEEKWDEISIGSLRFQVSGPCHRCQMICIDQQT 797
Query: 911 G 913
G
Sbjct: 798 G 798
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,293,427
Number of extensions: 1190943
Number of successful extensions: 5726
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5692
Number of HSP's successfully gapped: 3
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013670
(1039 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069848.1| MOSC domain-containing protein 2, mitochondr... 474 e-134
Alignment gi|XP_002694007.1| PREDICTED: MOCO sulphurase C-terminal domain... 366 e-101
Alignment gi|XP_617182.3| PREDICTED: MOCO sulphurase C-terminal domain co... 288 5e-78
Alignment gi|NP_776506.1| molybdenum cofactor sulfurase [Bos taurus]. 89 5e-18
>ref|NP_001069848.1| MOSC domain-containing protein 2, mitochondrial precursor [Bos
taurus].
Length = 336
Score = 474 bits (1219), Expect = e-134
Identities = 230/324 (70%), Positives = 264/324 (81%)
Frame = +2
Query: 68 MGAVGSSPLVRLGLSAPSRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQQVGTVARL 247
MGA GSS L RLGL A P LQQVGTV+ L
Sbjct: 1 MGAAGSSALARLGLPALPGPRWLGVAALGLAAVALGAVAWRRARPGRRRRLQQVGTVSEL 60
Query: 248 WLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSITHDD 427
W+YP+KSCKGV V AECTALGLR GH+RDRFW VIKEDGH+VT RQE +LVLVSIT++D
Sbjct: 61 WIYPIKSCKGVSVDAAECTALGLRSGHLRDRFWLVIKEDGHMVTGRQEPQLVLVSITYED 120
Query: 428 NCLVLRAPGMDQLVLPIKVPSSNRLHNCRMFGLDTQGRDCGDEAAQWFTSFLKTEAYRLV 607
+CL+LRAPGMDQLVLP K+ SSN+LH+CR+FGLD QGRDCGDEAAQWFTSFLKT+A+RLV
Sbjct: 121 DCLILRAPGMDQLVLPTKLLSSNKLHDCRVFGLDIQGRDCGDEAAQWFTSFLKTDAFRLV 180
Query: 608 QFEKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRMEKKVKMENFRPNI 787
QFEKN+K R S +IF S+ ++Y+VAYPDCSP++++SEASL DLNTRMEKKVK+ NFRPNI
Sbjct: 181 QFEKNMKARASNEIFPSLDKNYQVAYPDCSPVMILSEASLADLNTRMEKKVKINNFRPNI 240
Query: 788 EVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPDTGVIDRKEPLETLKSYRLCD 967
VTGCSAFEEDTW +LLIG+V+MKK+LAC RCI+TTVDPDTGVIDRKEPLETLKSYRLCD
Sbjct: 241 VVTGCSAFEEDTWDELLIGNVEMKKILACPRCIMTTVDPDTGVIDRKEPLETLKSYRLCD 300
Query: 968 PSEKPIYKSAPLLGIYYSVEKIGN 1039
PSEK IYKS+PL GIYYSVEKIG+
Sbjct: 301 PSEKSIYKSSPLFGIYYSVEKIGS 324
>ref|XP_002694007.1| PREDICTED: MOCO sulphurase C-terminal domain containing 1-like [Bos
taurus].
Length = 337
Score = 366 bits (939), Expect = e-101
Identities = 176/323 (54%), Positives = 227/323 (70%)
Frame = +2
Query: 68 MGAVGSSPLVRLGLSAPSRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQQVGTVARL 247
MGA GSS L R GL AP P LQQVGTV+ L
Sbjct: 1 MGAAGSSALARPGLPAPPGPRWLGVAALGLAAVALGAVAWRRARSRRRGRLQQVGTVSEL 60
Query: 248 WLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSITHDD 427
W+YP+KSCKGV V AECTALGLR GH+RDRFW VI ++G++VTARQE RLVL+S+T +
Sbjct: 61 WIYPIKSCKGVSVDAAECTALGLRSGHLRDRFWLVINKEGNMVTARQEPRLVLISLTCEG 120
Query: 428 NCLVLRAPGMDQLVLPIKVPSSNRLHNCRMFGLDTQGRDCGDEAAQWFTSFLKTEAYRLV 607
+ L L A L LP+K P++N +H CR+ GL+ +GRDCG+ AAQW T+FLKT+ YRLV
Sbjct: 121 DTLTLSAAYTKDLQLPVKTPTTNVVHRCRVHGLEIEGRDCGEAAAQWITNFLKTQPYRLV 180
Query: 608 QFEKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRMEKKVKMENFRPNI 787
FE +++ R S ++ + + ++ Y D SP L++SEASL DLN+R+EKKVK+ NFRPNI
Sbjct: 181 HFEPHMQPRNSHQVEDAFSPTDQIPYSDASPFLILSEASLADLNSRLEKKVKIANFRPNI 240
Query: 788 EVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPDTGVIDRKEPLETLKSYRLCD 967
++GC + ED+W +LLIGDV++K+V+AC RCILTTVDPDTGV+ RKEPLETLKSYRLCD
Sbjct: 241 VISGCGVYAEDSWNELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKSYRLCD 300
Query: 968 PSEKPIYKSAPLLGIYYSVEKIG 1036
PSE+ +Y +PL G Y+ +E G
Sbjct: 301 PSERKLYGKSPLFGQYFVLENPG 323
>ref|XP_617182.3| PREDICTED: MOCO sulphurase C-terminal domain containing 1-like [Bos
taurus].
Length = 264
Score = 288 bits (737), Expect = 5e-78
Identities = 132/233 (56%), Positives = 179/233 (76%)
Frame = +2
Query: 338 RFWTVIKEDGHVVTARQEHRLVLVSITHDDNCLVLRAPGMDQLVLPIKVPSSNRLHNCRM 517
RFW VI ++G++VTARQE RLVL+S+T + + L L A L LP+K P++N +H CR+
Sbjct: 18 RFWLVINKEGNMVTARQEPRLVLISLTCEGDTLTLSAAYTKDLQLPVKTPTTNVVHRCRV 77
Query: 518 FGLDTQGRDCGDEAAQWFTSFLKTEAYRLVQFEKNLKGRRSKKIFSSVAQDYEVAYPDCS 697
GL+ +GRDCG+ AAQW T+FLKT+ YRLV FE +++ R S ++ + + ++ Y D S
Sbjct: 78 HGLEIEGRDCGEAAAQWITNFLKTQPYRLVHFEPHMQPRNSHQVEDAFSPTDQIPYSDAS 137
Query: 698 PILVISEASLTDLNTRMEKKVKMENFRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACG 877
P L++SEASL DLN+R+EKKVK+ NFRPNI ++GC + ED+W +LLIGDV++K+V+AC
Sbjct: 138 PFLILSEASLADLNSRLEKKVKIANFRPNIVISGCGVYAEDSWNELLIGDVELKRVMACS 197
Query: 878 RCILTTVDPDTGVIDRKEPLETLKSYRLCDPSEKPIYKSAPLLGIYYSVEKIG 1036
RCILTTVDPDTGV+ RKEPLETLKSYRLCDPSE+ +Y +PL G Y+ +E G
Sbjct: 198 RCILTTVDPDTGVMSRKEPLETLKSYRLCDPSERKLYGKSPLFGQYFVLENPG 250
>ref|NP_776506.1| molybdenum cofactor sulfurase [Bos taurus].
Length = 849
Score = 89.4 bits (220), Expect = 5e-18
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 16/242 (6%)
Frame = +2
Query: 236 VARLWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVS- 412
+ L+LYP+KSC V + GL + DR W V+ +G ++ +QE RL L+
Sbjct: 552 ITNLFLYPIKSCAAFEVIRWPLGSQGL----LYDRSWMVVNHNGICLSQKQEPRLCLIQP 607
Query: 413 -ITHDDNCLVLRAPGMDQLVLPIKVPSSN-RLHNCRMFGLDTQGRDCGDEAAQWFTSFLK 586
I +V++A GM+ + +P++ S ++ ++ DCG++ + W + F
Sbjct: 608 FIDLQRRIMVIKAQGMEPIEVPLEENSEQVQICQSKVCADRVNTYDCGEKISNWLSKFFG 667
Query: 587 TEAYRLVQ---FEKNLKGRRSKKIFS------SVAQDYEVAYPDCSPILVISEASLTDLN 739
+ + Q F++N K + K + S+ + + + S IL + + T
Sbjct: 668 RPYHLIKQSSDFQRNAKKKHGKDQSAHTTATLSLVNEAQYLLINRSSILELQQQLSTSCE 727
Query: 740 TRMEKKVKMEN----FRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPD 907
E+ M N FR NI G AFEE+ W ++ IG ++ + + C RC + +D
Sbjct: 728 NGKEELFPMNNLISRFRANIITNGTRAFEEEKWDEISIGSLRFQVLGPCHRCQMICIDQQ 787
Query: 908 TG 913
TG
Sbjct: 788 TG 789
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,543,612
Number of extensions: 1145414
Number of successful extensions: 5453
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5426
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013670
(1039 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357681.1| PREDICTED: LOW QUALITY PROTEIN: MOSC domain-... 362 e-100
Alignment gi|XP_003130567.2| PREDICTED: MOSC domain-containing protein 2,... 234 5e-62
Alignment gi|XP_003357680.1| PREDICTED: MOSC domain-containing protein 2,... 206 1e-53
Alignment gi|XP_003130556.1| PREDICTED: MOSC domain-containing protein 2,... 125 3e-29
Alignment gi|XP_003356462.1| PREDICTED: molybdenum cofactor sulfurase-lik... 82 4e-16
Alignment gi|XP_003127949.2| PREDICTED: molybdenum cofactor sulfurase-lik... 49 4e-06
>ref|XP_003357681.1| PREDICTED: LOW QUALITY PROTEIN: MOSC domain-containing protein 1,
mitochondrial-like [Sus scrofa].
Length = 341
Score = 362 bits (930), Expect = e-100
Identities = 183/327 (55%), Positives = 229/327 (70%), Gaps = 4/327 (1%)
Frame = +2
Query: 68 MGAVGSSPLVRLGLSAPS--RPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LQQVGT 235
MGA GSSPLVRL L P+ RP LQQVGT
Sbjct: 1 MGAAGSSPLVRLRLRLPALLRPGLGLAALGLAAAALGAVAWSRARPRRRRRRRRLQQVGT 60
Query: 236 VARLWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSI 415
V++LW+YPVKSCKGVPVSEAECTALGLR GH+RDRFW VI ++G++VTARQE RLVL+S
Sbjct: 61 VSQLWIYPVKSCKGVPVSEAECTALGLRRGHLRDRFWLVINKEGNMVTARQEPRLVLISP 120
Query: 416 THDDNCLVLRAPGMDQLVLPIKVPSSNRLHNCRMFGLDTQGRDCGDEAAQWFTSFLKTEA 595
T + + L L A + L LPIK P++N +HNCR+ GL QGRDCG+ AQW TSFLKT+
Sbjct: 121 TCEGDTLTLSAAYTEDLQLPIKAPTTNAVHNCRVQGLQIQGRDCGEGRAQWITSFLKTQP 180
Query: 596 YRLVQFEKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRMEKKVKMENF 775
YRLV FE ++ R +I +VAY D SP L++SEASL DLN+R+EKKVK NF
Sbjct: 181 YRLVHFEPHMSPRNXHQIEHLFRPTDQVAYSDASPFLILSEASLADLNSRLEKKVKAANF 240
Query: 776 RPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPDTGVIDRKEPLETLKSY 955
RPNI ++GC A+ ED+W ++LIGDV++K+V+AC RC+LTTVDPDTG++ RKEPLETL+SY
Sbjct: 241 RPNIVISGCDAYAEDSWDEILIGDVELKRVMACYRCVLTTVDPDTGIMSRKEPLETLRSY 300
Query: 956 RLCDPSEKPIYKSAPLLGIYYSVEKIG 1036
RLCDPSE+ +Y +P G Y+ +E G
Sbjct: 301 RLCDPSEEKLYGKSPFFGQYFVLENPG 327
>ref|XP_003130567.2| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like
[Sus scrofa].
Length = 150
Score = 234 bits (598), Expect = 5e-62
Identities = 119/149 (79%), Positives = 119/149 (79%)
Frame = +2
Query: 68 MGAVGSSPLVRLGLSAPSRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQQVGTVARL 247
MGAVGSSPLVRLGLSAPSRP LQQVGTVARL
Sbjct: 1 MGAVGSSPLVRLGLSAPSRPRWLGVAALGLAAVALGAVAWRRAWPRRRRRLQQVGTVARL 60
Query: 248 WLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSITHDD 427
WLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSITHDD
Sbjct: 61 WLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSITHDD 120
Query: 428 NCLVLRAPGMDQLVLPIKVPSSNRLHNCR 514
NCLVLRAPGMDQLVLPIKVPSSNRLHNCR
Sbjct: 121 NCLVLRAPGMDQLVLPIKVPSSNRLHNCR 149
>ref|XP_003357680.1| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like,
partial [Sus scrofa].
Length = 136
Score = 206 bits (525), Expect = 1e-53
Identities = 101/101 (100%), Positives = 101/101 (100%)
Frame = +2
Query: 515 MFGLDTQGRDCGDEAAQWFTSFLKTEAYRLVQFEKNLKGRRSKKIFSSVAQDYEVAYPDC 694
MFGLDTQGRDCGDEAAQWFTSFLKTEAYRLVQFEKNLKGRRSKKIFSSVAQDYEVAYPDC
Sbjct: 1 MFGLDTQGRDCGDEAAQWFTSFLKTEAYRLVQFEKNLKGRRSKKIFSSVAQDYEVAYPDC 60
Query: 695 SPILVISEASLTDLNTRMEKKVKMENFRPNIEVTGCSAFEE 817
SPILVISEASLTDLNTRMEKKVKMENFRPNIEVTGCSAFEE
Sbjct: 61 SPILVISEASLTDLNTRMEKKVKMENFRPNIEVTGCSAFEE 101
>ref|XP_003130556.1| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like [Sus
scrofa].
Length = 73
Score = 125 bits (315), Expect = 3e-29
Identities = 59/62 (95%), Positives = 61/62 (98%)
Frame = +2
Query: 854 MKKVLACGRCILTTVDPDTGVIDRKEPLETLKSYRLCDPSEKPIYKSAPLLGIYYSVEKI 1033
MKKVLACGRCILTTVDPDTGVIDRKEPLETLKSYRLCDPSE+PIYKSAPL GIYYSVEKI
Sbjct: 1 MKKVLACGRCILTTVDPDTGVIDRKEPLETLKSYRLCDPSERPIYKSAPLFGIYYSVEKI 60
Query: 1034 GN 1039
G+
Sbjct: 61 GS 62
>ref|XP_003356462.1| PREDICTED: molybdenum cofactor sulfurase-like [Sus scrofa].
Length = 889
Score = 82.4 bits (202), Expect = 4e-16
Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 19/245 (7%)
Frame = +2
Query: 236 VARLWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVS- 412
V L+LYP+KSC V+ GL + DR W V+ +G ++ +QE RL L+
Sbjct: 585 VTNLYLYPIKSCAAFEVTRWPLGNQGL----LYDRSWMVVNHNGICLSQKQEPRLCLIQP 640
Query: 413 -ITHDDNCLVLRAPGMDQLVLPIKVPSSNRLHNC--RMFGLDTQGRDCGDEAAQWFTSFL 583
I ++++A GM+ + +P++ +S R C ++ DCG++ + W + F
Sbjct: 641 IIDLQQRVMIIKAQGMEPIEVPLE-ENSQRAQICQSKVCADRVNAYDCGEKISAWLSRFF 699
Query: 584 KTEAYRLVQ---FEKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRMEK 754
+ + Q F +N + + K ++ + + L+I+ +S+ +L ++ +
Sbjct: 700 GRPCHLIKQSSDFRRNPRRKHGKD--QPACTTATLSLVNEAQYLLINRSSVLELQRQLNR 757
Query: 755 ------------KVKMENFRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTV 898
K + FR NI G AFEE+ W + +G + + + C RC + +
Sbjct: 758 SGENGKEELFPMKDLISRFRANIITNGTRAFEEEKWDGISVGSLHFQVLGPCHRCQMICI 817
Query: 899 DPDTG 913
+ TG
Sbjct: 818 NQQTG 822
>ref|XP_003127949.2| PREDICTED: molybdenum cofactor sulfurase-like, partial [Sus
scrofa].
Length = 319
Score = 49.3 bits (116), Expect = 4e-06
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +2
Query: 236 VARLWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVS- 412
V L+LYP+KSC V+ GL + DR W V+ +G ++ +QE RL L+
Sbjct: 131 VTNLYLYPIKSCAAFEVTRWPLGNQGL----LYDRSWMVVNHNGICLSQKQEPRLCLIQP 186
Query: 413 -ITHDDNCLVLRAPGMDQLVLPIKVPSSNRLHNCRMFGLDTQGRDCGDEAA 562
I ++++A GM+ + +P++ +S R C Q + C D +A
Sbjct: 187 IIDLQRRVMIIKAQGMEPIEVPLE-ENSERAQIC-------QSKVCADRSA 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,887,000
Number of extensions: 743041
Number of successful extensions: 3638
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3615
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013670
(1039 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598445.1| MOSC domain-containing protein 2, mitochondrial... 440 e-124
Alignment gi|NP_001074830.1| MOSC domain-containing protein 1, mitochondr... 353 9e-98
Alignment gi|NP_081055.1| molybdenum cofactor sulfurase [Mus musculus]. 86 5e-17
>ref|NP_598445.1| MOSC domain-containing protein 2, mitochondrial precursor [Mus
musculus].
Length = 338
Score = 440 bits (1132), Expect = e-124
Identities = 211/326 (64%), Positives = 257/326 (78%), Gaps = 2/326 (0%)
Frame = +2
Query: 68 MGAVGSSPLVRLGLSAPSRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQQVGTVARL 247
MG+ S+ L RLGL R LQQVGTV+++
Sbjct: 1 MGSSSSTALARLGLPGQPRSTWLGVAALGLAAVALGTVAWRRTRPRRRRQLQQVGTVSKV 60
Query: 248 WLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSITHDD 427
W+YP+KSCKGV V E ECT +GLRCG VRDRFW V+KEDGH+VTARQE RLVLVSIT ++
Sbjct: 61 WIYPIKSCKGVSVCETECTDMGLRCGKVRDRFWMVVKEDGHMVTARQEPRLVLVSITLEN 120
Query: 428 NCLVLRAPGMDQLVLPIKVPSSNRLHNCRMFGLDTQGRDCGDEAAQWFTSFLKTEAYRLV 607
N L L APGM+Q+VLPIK+PSSN++HNCR+FGLD +GRDCGDE AQWFT++LKT+AYRLV
Sbjct: 121 NYLTLEAPGMEQIVLPIKLPSSNKIHNCRLFGLDIKGRDCGDEVAQWFTNYLKTQAYRLV 180
Query: 608 QFEKNLKGRRSKKIF--SSVAQDYEVAYPDCSPILVISEASLTDLNTRMEKKVKMENFRP 781
QF+ ++KGR +KK++ S Q+YEVAYPDCSP+ +ISEASL DLNTR++KKVKME FRP
Sbjct: 181 QFDTSMKGRTTKKLYPSESYLQNYEVAYPDCSPVHLISEASLVDLNTRLKKKVKMEYFRP 240
Query: 782 NIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPDTGVIDRKEPLETLKSYRL 961
NI V+GC AFEEDTW +LLIGDV+MK+VL+C RC+LTTVDPDTG+IDRKEPLETLKSYRL
Sbjct: 241 NIVVSGCEAFEEDTWDELLIGDVEMKRVLSCPRCVLTTVDPDTGIIDRKEPLETLKSYRL 300
Query: 962 CDPSEKPIYKSAPLLGIYYSVEKIGN 1039
CDPS K IY+S+PL G+Y+SVEK+G+
Sbjct: 301 CDPSVKSIYQSSPLFGMYFSVEKLGS 326
>ref|NP_001074830.1| MOSC domain-containing protein 1, mitochondrial [Mus musculus].
Length = 342
Score = 353 bits (907), Expect = 9e-98
Identities = 167/275 (60%), Positives = 219/275 (79%), Gaps = 2/275 (0%)
Frame = +2
Query: 218 LQQVGTVARLWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHR 397
LQQVGTVA+LW+YP+KSCKG+ VSEAECTA+GLR GH+RDRFW VI E+G++VTARQE R
Sbjct: 55 LQQVGTVAQLWIYPIKSCKGLSVSEAECTAMGLRYGHLRDRFWLVINEEGNMVTARQEPR 114
Query: 398 LVLVSITHDDNCLVLRAPGMDQLVLPIKVPSSNRLHNCRMFGLDTQGRDCGDEAAQWFTS 577
LVL+S+T +D+ L L A L+LPI P++N L CR+ GL+ QGRDCG++AAQW +S
Sbjct: 115 LVLISLTCEDDTLTLSAAYTKDLLLPITPPATNPLLQCRVHGLEIQGRDCGEDAAQWVSS 174
Query: 578 FLKTEAYRLVQFEKNLKGRRSK--KIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRME 751
FLK ++ RLV FE +++ R S+ K S +Q+ EVAY D SP LV+SEASL DLN+R+E
Sbjct: 175 FLKMQSCRLVHFEPHMRPRSSRQMKASKSFSQNNEVAYSDASPFLVLSEASLEDLNSRLE 234
Query: 752 KKVKMENFRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPDTGVIDRKE 931
++VK NFRPNI ++GC + ED+W ++LIGDV++K+V+AC RC+LTTVDPDTG+ DRKE
Sbjct: 235 RRVKATNFRPNIVISGCGVYAEDSWNEVLIGDVELKRVMACTRCLLTTVDPDTGISDRKE 294
Query: 932 PLETLKSYRLCDPSEKPIYKSAPLLGIYYSVEKIG 1036
PLETLKSYRLCDPSE+ +Y P+ G Y+++E G
Sbjct: 295 PLETLKSYRLCDPSEQALYGKLPIFGQYFALENPG 329
>ref|NP_081055.1| molybdenum cofactor sulfurase [Mus musculus].
Length = 862
Score = 85.9 bits (211), Expect = 5e-17
Identities = 60/244 (24%), Positives = 118/244 (48%), Gaps = 18/244 (7%)
Frame = +2
Query: 236 VARLWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVS- 412
V ++LYP+KSC V++ + GL + DR W V+ +G ++ +QE RL L+
Sbjct: 572 VTNIYLYPIKSCAAFEVTKWPVGSQGL----LYDRSWMVVNHNGICMSQKQEPRLCLIQP 627
Query: 413 -ITHDDNCLVLRAPGMDQLVLPIKVPSSN-RLHNCRMFGLDTQGRDCGDEAAQWFTSFLK 586
I +V++A GM+ + +P++ ++ R+ DCG+ ++W + FL
Sbjct: 628 FIDLQQRIMVIKAEGMEPIQVPLEEDGEQTQICQSRVCADRVNTYDCGENVSRWLSKFLG 687
Query: 587 TEAYRLVQ---FEKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRM--- 748
+ + Q F++N R++ K ++ + + L+++ +S+ +L ++
Sbjct: 688 RLCHLIKQSPHFQRN--ARKTPKKGQPPGTTVALSLVNEAQYLLVNTSSILELQRQLNAS 745
Query: 749 -----EKKVKMEN----FRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVD 901
E+ M++ FR NI G AFEE+ W ++ IG + + + C RC + ++
Sbjct: 746 DEHGKEESFSMKDLISRFRANIITKGARAFEEEKWDEISIGSLHFQVLGPCHRCQMICIN 805
Query: 902 PDTG 913
TG
Sbjct: 806 QQTG 809
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,149,488
Number of extensions: 952031
Number of successful extensions: 4234
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4212
Number of HSP's successfully gapped: 3
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013670
(1039 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060368.2| MOSC domain-containing protein 2, mitochondrial... 456 e-128
Alignment gi|NP_073583.3| MOSC domain-containing protein 1, mitochondrial... 365 e-101
Alignment gi|NP_060417.2| molybdenum cofactor sulfurase [Homo sapiens]. 87 3e-17
>ref|NP_060368.2| MOSC domain-containing protein 2, mitochondrial precursor [Homo
sapiens].
Length = 335
Score = 456 bits (1172), Expect = e-128
Identities = 220/324 (67%), Positives = 261/324 (80%)
Frame = +2
Query: 68 MGAVGSSPLVRLGLSAPSRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQQVGTVARL 247
MGA SS L RLGL A P LQQVGTVA+L
Sbjct: 1 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL 60
Query: 248 WLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSITHDD 427
W+YPVKSCKGVPVSEAECTA+GLR G++RDRFW VIKEDGH+VTARQE RLVL+SI +++
Sbjct: 61 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN 120
Query: 428 NCLVLRAPGMDQLVLPIKVPSSNRLHNCRMFGLDTQGRDCGDEAAQWFTSFLKTEAYRLV 607
NCL+ RAP MDQLVLP K PSSN+LHNCR+FGLD +GRDCG+EAA+WFT+FLKTEAYRLV
Sbjct: 121 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFTNFLKTEAYRLV 180
Query: 608 QFEKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRMEKKVKMENFRPNI 787
QFE N+KGR S+K+ ++ Q+++VAYPD P+L++++ASL DLNTRMEKK+KMENFRPNI
Sbjct: 181 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI 240
Query: 788 EVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPDTGVIDRKEPLETLKSYRLCD 967
VTGC AFEEDTW +LLIG V++KKV+AC RCILTTVDPDTGVIDRK+PL+TLKSYRLCD
Sbjct: 241 VVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLCD 300
Query: 968 PSEKPIYKSAPLLGIYYSVEKIGN 1039
PSE+ +YK +PL GIYYSVEKIG+
Sbjct: 301 PSERELYKLSPLFGIYYSVEKIGS 324
>ref|NP_073583.3| MOSC domain-containing protein 1, mitochondrial precursor [Homo
sapiens].
Length = 337
Score = 365 bits (937), Expect = e-101
Identities = 181/324 (55%), Positives = 228/324 (70%), Gaps = 1/324 (0%)
Frame = +2
Query: 68 MGAVGSSPLVRLGLSAPSRP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQQVGTVAR 244
MGA GSS L R L A SRP LQQVGTVA+
Sbjct: 1 MGAAGSSALARFVLLAQSRPGWLGVAALGLTAVALGAVAWRRAWPTRRRRLLQQVGTVAQ 60
Query: 245 LWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSITHD 424
LW+YPVKSCKGVPVSEAECTA+GLR G++RDRFW VI ++G++VTARQE RLVL+S+T D
Sbjct: 61 LWIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVINQEGNMVTARQEPRLVLISLTCD 120
Query: 425 DNCLVLRAPGMDQLVLPIKVPSSNRLHNCRMFGLDTQGRDCGDEAAQWFTSFLKTEAYRL 604
+ L L A L+LPIK P++N +H CR+ GL+ +GRDCG+ AQW TSFLK++ YRL
Sbjct: 121 GDTLTLSAAYTKDLLLPIKTPTTNAVHKCRVHGLEIEGRDCGEATAQWITSFLKSQPYRL 180
Query: 605 VQFEKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRMEKKVKMENFRPN 784
V FE +++ RR +I ++AY D SP L++SEASL DLN+R+EKKVK NFRPN
Sbjct: 181 VHFEPHMRPRRPHQIADLFRPKDQIAYSDTSPFLILSEASLADLNSRLEKKVKATNFRPN 240
Query: 785 IEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVDPDTGVIDRKEPLETLKSYRLC 964
I ++GC + ED+W +LLIGDV++K+V+AC RCILTTVDPDTGV+ RKEPLETLKSYR C
Sbjct: 241 IVISGCDVYAEDSWDELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKSYRQC 300
Query: 965 DPSEKPIYKSAPLLGIYYSVEKIG 1036
DPSE+ +Y +PL G Y+ +E G
Sbjct: 301 DPSERKLYGKSPLFGQYFVLENPG 324
>ref|NP_060417.2| molybdenum cofactor sulfurase [Homo sapiens].
Length = 888
Score = 86.7 bits (213), Expect = 3e-17
Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 18/244 (7%)
Frame = +2
Query: 236 VARLWLYPVKSCKGVPVSEAECTALGLRCGHVRDRFWTVIKEDGHVVTARQEHRLVLVSI 415
V L+LYP+KSC V+ GL + DR W V+ +G ++ +QE RL L+
Sbjct: 584 VTNLYLYPIKSCAAFEVTRWPVGNQGL----LYDRSWMVVNHNGVCLSQKQEPRLCLIQP 639
Query: 416 THD--DNCLVLRAPGMDQLVLPIKVPSSN-RLHNCRMFGLDTQGRDCGDEAAQWFTSFLK 586
D +V++A GM+ + +P++ S ++ R+ DCG++ + W ++F
Sbjct: 640 FIDLRQRIMVIKAKGMEPIEVPLEENSERTQIRQSRVCADRVSTYDCGEKISSWLSTFFG 699
Query: 587 TEAYRLVQF---EKNLKGRRSKKIFSSVAQDYEVAYPDCSPILVISEASLTDLNTRM--- 748
+ + Q ++N K + K + + L+I+ +S+ +L+ ++
Sbjct: 700 RPCHLIKQSSNSQRNAKKKHGKDQLPGTMATLSLVNE--AQYLLINTSSILELHRQLNTS 757
Query: 749 EKKVKME---------NFRPNIEVTGCSAFEEDTWGDLLIGDVKMKKVLACGRCILTTVD 901
++ K E FR NI + G AFEE+ W ++ IG ++ + + C RC + +D
Sbjct: 758 DENGKEELFSLKDLSLRFRANIIINGKRAFEEEKWDEISIGSLRFQVLGPCHRCQMICID 817
Query: 902 PDTG 913
TG
Sbjct: 818 QQTG 821
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,352,778
Number of extensions: 1150307
Number of successful extensions: 5139
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5119
Number of HSP's successfully gapped: 3
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013670
(1039 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 353 1e-94
>Sscrofa_Chr10
|| Length = 79102373
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 337 caggttctggacggtgattaaggaagatggacacgtggtgaccgcacggcaggagcatcg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12281083 caggttctggacggtgattaaggaagatggacacgtggtgaccgcacggcaggagcatcg 12281024
Query: 397 ccttgtgctggtctccatcacccatgatgacaactgccttgtcctcagggcgccgggcat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12281023 ccttgtgctggtctccatcacccatgatgacaactgccttgtcctcagggcgccgggcat 12280964
Query: 457 ggaccagctggttttgcccatcaaggtgccttcctccaacaggctccacaactgcagg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12280963 ggaccagctggttttgcccatcaaggtgccttcctccaacaggctccacaactgcagg 12280906
Score = 327 bits (165), Expect = 7e-87
Identities = 168/169 (99%)
Strand = Plus / Minus
Query: 511 caggatgttcggtctcgacacccagggcagggactgtggcgacgaagctgctcagtggtt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12275847 caggatgttcggtctcgacacccagggcagggactgtggcgacgaagctgctcagtggtt 12275788
Query: 571 caccagcttcttgaaaacggaagcttatcggctggttcagtttgaaaagaacctgaaggg 630
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12275787 caccagcttcttgaaaacggaagcttatcgcctggttcagtttgaaaagaacctgaaggg 12275728
Query: 631 aagacgatcaaagaaaatattctcctccgttgcccaggattacgaggtg 679
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12275727 aagacgatcaaagaaaatattctcctccgttgcccaggattacgaggtg 12275679
Score = 299 bits (151), Expect = 2e-78
Identities = 154/155 (99%)
Strand = Plus / Minus
Query: 1 gccccgagcccccggcgccctgcccgcgccagtcgcaggctggtctgcgctccgcggtcg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12288339 gccccgagcccccggcgccccgcccgcgccagtcgcaggctggtctgcgctccgcggtcg 12288280
Query: 61 ccgggtcatgggcgccgtcggctcgtccccgctggtccgcctcggcctctccgcgccgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12288279 ccgggtcatgggcgccgtcggctcgtccccgctggtccgcctcggcctctccgcgccgtc 12288220
Query: 121 ccggccccgctggctcggggtcgccgcgctgggac 155
|||||||||||||||||||||||||||||||||||
Sbjct: 12288219 ccggccccgctggctcggggtcgccgcgctgggac 12288185
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 675 aggtggcctacccagactgcagccccatcttggtcatctcagaagcctctctgacggatc 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12274496 aggtggcctacccagactgcagccccatcttggtcatctcagaagcctctctgacggatc 12274437
Query: 735 tgaacacgaggatggagaagaaggtgaaaatggaaaatttcaggccaaatatcgaggtga 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12274436 tgaacacgaggatggagaagaaggtgaaaatggaaaatttcaggccaaatatcgaggtga 12274377
Query: 795 caggttgcagtgcttttgaggagg 818
||||||||||||||||||||||||
Sbjct: 12274376 caggttgcagtgcttttgaggagg 12274353
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 219 tgcagcaggtgggcaccgtggcgagactctggctctacccggtcaagtcgtgcaaggggg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12288121 tgcagcaggtgggcaccgtggcgagactctggctctacccggtcaagtcgtgcaaggggg 12288062
Query: 279 tgccggtgagcgaggccgagtgcacggccctggggctgcgctgcggccacgtgcgcgaca 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12288061 tgccggtgagcgaggccgagtgcacggccctggggctgcgctgcggccacgtgcgcgaca 12288002
Query: 339 ggt 341
|||
Sbjct: 12288001 ggt 12287999
Score = 165 bits (83), Expect = 6e-38
Identities = 113/123 (91%)
Strand = Plus / Minus
Query: 219 tgcagcaggtgggcaccgtggcgagactctggctctacccggtcaagtcgtgcaaggggg 278
|||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct: 12360856 tgcagcaggtgggcaccgtgtcgcagctctggatctacccggtcaagtcgtgcaaggggg 12360797
Query: 279 tgccggtgagcgaggccgagtgcacggccctggggctgcgctgcggccacgtgcgcgaca 338
||||||||||||||||||||||||| ||||||||||||||| |||| ||| |||| ||||
Sbjct: 12360796 tgccggtgagcgaggccgagtgcaccgccctggggctgcgccgcgggcacctgcgggaca 12360737
Query: 339 ggt 341
|||
Sbjct: 12360736 ggt 12360734
Score = 143 bits (72), Expect = 2e-31
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 872 tgtggcaggtgcattttgaccacggtcgacccagacaccggagtgattgacaggaaggag 931
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12370001 tgtgacaggtgcattttgaccacggtcgacccagacaccggagtgattgacaggaaggag 12369942
Query: 932 cccctggaaaccctgaagag 951
|||||||| |||||||||||
Sbjct: 12369941 cccctggagaccctgaagag 12369922
Score = 135 bits (68), Expect = 5e-29
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 950 agctaccgcctgtgtgatccctctgaaaagccaatttacaagtcggccccccttttggga 1009
|||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 12368110 agctaccgcctgtgtgatccctctgagaggccaatttacaagtcggccccactttttggg 12368051
Query: 1010 atctattattcagtggaaaaaattggaa 1037
||||||||||||||||||||||||||||
Sbjct: 12368050 atctattattcagtggaaaaaattggaa 12368023
Score = 123 bits (62), Expect = 2e-25
Identities = 65/66 (98%)
Strand = Plus / Minus
Query: 816 aggacacctggggtgacctcctcattggcgacgtaaagatgaaaaaggttttggcttgtg 875
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 12370144 aggacacctggggtgacctcctcattggcgacgtagagatgaaaaaggttttggcttgtg 12370085
Query: 876 gcaggt 881
||||||
Sbjct: 12370084 gcaggt 12370079
Score = 77.8 bits (39), Expect = 1e-11
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 63 gggtcatgggcgccgtcggctcgtccccgctggtccgcctcggcctc 109
||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 12361024 gggtcatgggcgccgccggctcgtccccgctggtccgcctccgcctc 12360978
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,969,797
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 10
Length of query: 1039
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1018
Effective length of database: 2,808,413,156
Effective search space: 2858964592808
Effective search space used: 2858964592808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)