Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013674
(1165 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091614.1| mpv17-like protein 2 [Bos taurus]. 413 e-115
Alignment gi|XP_002694456.1| PREDICTED: mpv17-like protein 2-like [Bos ta... 178 7e-45
Alignment gi|XP_001251407.2| PREDICTED: mpv17-like protein 2-like [Bos ta... 178 7e-45
Alignment gi|NP_001039394.1| protein Mpv17 [Bos taurus]. 77 4e-14
Alignment gi|NP_001039473.1| peroxisomal membrane protein 2 [Bos taurus]. 74 3e-13
Alignment gi|NP_001040067.1| mpv17-like protein [Bos taurus]. 71 2e-12
>ref|NP_001091614.1| mpv17-like protein 2 [Bos taurus].
Length = 218
Score = 413 bits (1061), Expect = e-115
Identities = 189/209 (90%), Positives = 196/209 (93%)
Frame = +1
Query: 271 MASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPR 450
M GGWRWLR L AAGQPLFQGRALLVTNTLGCG LMAAGDG RQ+WEIRARPGQKFDPR
Sbjct: 1 MPPGGWRWLRGLWAAGQPLFQGRALLVTNTLGCGVLMAAGDGARQTWEIRARPGQKFDPR 60
Query: 451 RSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVDQVVASPMLGVWYFLG 630
RS SMFAVGCSMGPFLHYWYLWLDRL PASGF GLPNVL+KVL+DQ+VASPMLGVWYFLG
Sbjct: 61 RSVSMFAVGCSMGPFLHYWYLWLDRLFPASGFPGLPNVLKKVLIDQLVASPMLGVWYFLG 120
Query: 631 LGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDT 810
LG LEGQTLD+SCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDT
Sbjct: 121 LGCLEGQTLDKSCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDT 180
Query: 811 YLSYLKYRVPSPLTPPGCVVLGTVQTELP 897
YLSYLKYR+P PLTPPGCV LGT+QTE P
Sbjct: 181 YLSYLKYRIPGPLTPPGCVALGTIQTEPP 209
>ref|XP_002694456.1| PREDICTED: mpv17-like protein 2-like [Bos taurus].
Length = 163
Score = 178 bits (452), Expect = 7e-45
Identities = 81/91 (89%), Positives = 83/91 (91%)
Frame = +1
Query: 283 GWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPRRSAS 462
GWRWLR L AAGQPLFQGRALL+TNTLGCG LMAAGDG RQ+WEIRARP QKFDPRRS S
Sbjct: 5 GWRWLRGLWAAGQPLFQGRALLLTNTLGCGVLMAAGDGARQTWEIRARPSQKFDPRRSVS 64
Query: 463 MFAVGCSMGPFLHYWYLWLDRLLPASGFRGL 555
MFAVGCSMGPFLHYWYLWLDRL PASGF GL
Sbjct: 65 MFAVGCSMGPFLHYWYLWLDRLFPASGFPGL 95
>ref|XP_001251407.2| PREDICTED: mpv17-like protein 2-like [Bos taurus].
Length = 163
Score = 178 bits (452), Expect = 7e-45
Identities = 81/91 (89%), Positives = 83/91 (91%)
Frame = +1
Query: 283 GWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPRRSAS 462
GWRWLR L AAGQPLFQGRALL+TNTLGCG LMAAGDG RQ+WEIRARP QKFDPRRS S
Sbjct: 5 GWRWLRGLWAAGQPLFQGRALLLTNTLGCGVLMAAGDGARQTWEIRARPSQKFDPRRSVS 64
Query: 463 MFAVGCSMGPFLHYWYLWLDRLLPASGFRGL 555
MFAVGCSMGPFLHYWYLWLDRL PASGF GL
Sbjct: 65 MFAVGCSMGPFLHYWYLWLDRLFPASGFPGL 95
>ref|NP_001039394.1| protein Mpv17 [Bos taurus].
Length = 176
Score = 76.6 bits (187), Expect = 4e-14
Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Frame = +1
Query: 361 LGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFAVGCS-MGPFLHYWYLWLDRLLPA 537
L G+LM GD + Q + R Q R+ +M ++GC +GP + WY LDRL+P
Sbjct: 21 LTAGSLMGLGDVISQQL-VERRGLQAHQAGRTLTMASLGCGFVGPVVGGWYRVLDRLIPG 79
Query: 538 SGFRGLPNVLRKVLVDQVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKADWC 717
+ + L+K+L+DQ +P + +G L G + ++ +L+ F + ++
Sbjct: 80 TT---KVDALKKMLLDQGGFAPCFLGCFLPLVGTLNGLSAQDNWAKLQRDFPDALITNYY 136
Query: 718 VWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYLKYRV 837
+WPA QL NF VP +R+ + + + W++YLS+ +R+
Sbjct: 137 LWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 176
>ref|NP_001039473.1| peroxisomal membrane protein 2 [Bos taurus].
Length = 196
Score = 73.6 bits (179), Expect = 3e-13
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 5/165 (3%)
Frame = +1
Query: 346 LVTNTLGCGALMAAGDGVRQSWEIRARP---GQKFDPRRSASMFAVGCSM-GPFLHYWYL 513
++T G L A G+ + Q E + + QK D G GP H++YL
Sbjct: 34 VLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFTGPLGHFFYL 93
Query: 514 WLDRLLPASGFRGLPNV-LRKVLVDQVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKF 690
++R +P+ +P ++++L+D+++ +P +FL + +LEGQ +++ F
Sbjct: 94 LMERWIPSE----VPLAGIKRLLLDRLLFAPAFLSLFFLVMNFLEGQDTAAFAAKMKSGF 149
Query: 691 WEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYL 825
W + +W VW Q +N ++P QFRV + N + L W YL+ L
Sbjct: 150 WPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYLASL 194
>ref|NP_001040067.1| mpv17-like protein [Bos taurus].
Length = 196
Score = 70.9 bits (172), Expect = 2e-12
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Frame = +1
Query: 292 WLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFA 471
W ++L A GR N L + GD ++Q +R P D + + +
Sbjct: 4 WWQALTRAA-----GRYPWPANVLLYAGFFSGGDALQQV--LRGGPA---DWQHTRHVAT 53
Query: 472 VGCSMGPFLHY-WYLWLDRLLPASGFRGLPNVLRKVLVDQVVASPMLGVWYFLGLGYLEG 648
V + L+Y W L+R LP R +L KVL DQ + P+ ++ G+ L+G
Sbjct: 54 VAVAFHANLNYVWLNLLERALPGRAPR---TILAKVLCDQALGGPVYVSTFYAGMSILQG 110
Query: 649 QTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSY 822
+ D+ ++R KFW YK+ WP QL+NF +P ++R Y W T+L +
Sbjct: 111 K--DDIFLDMRQKFWNTYKSGLMYWPFVQLINFSLIPIRWRTAYTGLCGFLWATFLCF 166
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,508,619
Number of extensions: 1982951
Number of successful extensions: 11469
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 11310
Number of HSP's successfully gapped: 6
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013674
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013674
(1165 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541943.2| PREDICTED: similar to CG32262-PA isoform 1 [Can... 375 e-104
Alignment gi|XP_865471.1| PREDICTED: similar to CG32262-PA isoform 2 [Can... 332 5e-91
Alignment gi|XP_543347.1| PREDICTED: similar to Peroxisomal membrane prot... 76 5e-14
Alignment gi|XP_853776.1| PREDICTED: similar to MpV17 transgene, murine h... 75 1e-13
>ref|XP_541943.2| PREDICTED: similar to CG32262-PA isoform 1 [Canis familiaris].
Length = 206
Score = 375 bits (963), Expect = e-104
Identities = 176/197 (89%), Positives = 183/197 (92%)
Frame = +1
Query: 271 MASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPR 450
MASGGWRWLR L A GQPLFQGRALLVTNTLGCG LMAAGDGVRQSWE+RARPGQKFDPR
Sbjct: 1 MASGGWRWLRGLRAVGQPLFQGRALLVTNTLGCGTLMAAGDGVRQSWELRARPGQKFDPR 60
Query: 451 RSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVDQVVASPMLGVWYFLG 630
RSASMFAVGCSMGPFLHYWYLWLD LLPASG GL NVLRKVL+DQ+VASP+LG+WYFLG
Sbjct: 61 RSASMFAVGCSMGPFLHYWYLWLDHLLPASGLSGLRNVLRKVLIDQLVASPLLGIWYFLG 120
Query: 631 LGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDT 810
+G LEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVP QFRVTYINGLTLGWDT
Sbjct: 121 IGCLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPTQFRVTYINGLTLGWDT 180
Query: 811 YLSYLKYRVPSPLTPPG 861
YLSYLKYRV S + PG
Sbjct: 181 YLSYLKYRV-STVGGPG 196
>ref|XP_865471.1| PREDICTED: similar to CG32262-PA isoform 2 [Canis familiaris].
Length = 188
Score = 332 bits (850), Expect = 5e-91
Identities = 160/197 (81%), Positives = 166/197 (84%)
Frame = +1
Query: 271 MASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPR 450
MASGGWRWLR L A GQPLFQGRALLVTNTLGCG LMAAGDGVRQSWE+RARPGQKFDPR
Sbjct: 1 MASGGWRWLRGLRAVGQPLFQGRALLVTNTLGCGTLMAAGDGVRQSWELRARPGQKFDPR 60
Query: 451 RSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVDQVVASPMLGVWYFLG 630
RSASMFAVGCSMGPFLHYWYLWLD LLPASG GL NVLRKVL+DQ+VASP+LG+WYFL
Sbjct: 61 RSASMFAVGCSMGPFLHYWYLWLDHLLPASGLSGLRNVLRKVLIDQLVASPLLGIWYFL- 119
Query: 631 LGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDT 810
DKFWEFYKADWCVWPAAQLVNFLFVP QFRVTYINGLTLGWDT
Sbjct: 120 -----------------DKFWEFYKADWCVWPAAQLVNFLFVPTQFRVTYINGLTLGWDT 162
Query: 811 YLSYLKYRVPSPLTPPG 861
YLSYLKYRV S + PG
Sbjct: 163 YLSYLKYRV-STVGGPG 178
>ref|XP_543347.1| PREDICTED: similar to Peroxisomal membrane protein 2 (22 kDa
peroxisomal membrane protein) [Canis familiaris].
Length = 229
Score = 76.3 bits (186), Expect = 5e-14
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Frame = +1
Query: 313 AGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARP---GQKFDPRRSASMFAVGCS 483
AG+P+ L N G G L A G+ + Q E + QK D G
Sbjct: 56 AGRPVCTFVVLAALNLGGSGILSALGNFLAQMIEKKREKENCSQKLDVSGPLRYAIYGFF 115
Query: 484 M-GPFLHYWYLWLDRLLPASGFRGLPNV----LRKVLVDQVVASPMLGVWYFLGLGYLEG 648
GP H++YL+++ +P P V ++++L+D+++ +P + +FL + +LEG
Sbjct: 116 FTGPLNHFFYLFMEHWIP-------PEVPLAGVKRLLLDRLLFAPAFLLLFFLIMNFLEG 168
Query: 649 QTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYL 825
+ ++R FW +W VW Q +N +VP QFRV + N ++L W YL+ L
Sbjct: 169 RETAAFAVQIRRSFWPALCMNWRVWTPVQFININYVPLQFRVLFANLVSLFWYIYLASL 227
>ref|XP_853776.1| PREDICTED: similar to MpV17 transgene, murine homolog,
glomerulosclerosis [Canis familiaris].
Length = 295
Score = 75.1 bits (183), Expect = 1e-13
Identities = 71/259 (27%), Positives = 120/259 (46%), Gaps = 15/259 (5%)
Frame = +1
Query: 106 GRRLTRVTGGGHANQE-DSVRLASTAQGRHPRRGNHLRLV---GMGWAAG--APVPGSQR 267
G+RL + GG + + R ++ +GR RR + LV G+ +AG A QR
Sbjct: 61 GQRLNQALGGRQPRRRAEKARRSAGRKGRVLRRKSCPGLVTWEGLDASAGIMALWRAYQR 120
Query: 268 TMASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDP 447
+ W+ L G+LM GD + Q + R +
Sbjct: 121 ALTVHPWK--------------------VQVLTAGSLMGLGDIISQQL-VEKRGLRGHQT 159
Query: 448 RRSASMFAVGCS-MGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVDQV--VASPMLGVW 618
R+ +M +GC +GP + WY LDRL+P + + L+K+L+DQV ++ P G
Sbjct: 160 GRTLTMAFLGCGFVGPVVGGWYRVLDRLIPGTA---KADALKKMLLDQVTLISLPRGGFA 216
Query: 619 -YFLG-----LGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTY 780
FLG +G L G + ++ +LR + + ++ +WPA QL NF VP +R+
Sbjct: 217 PCFLGCFLPLVGALNGLSAQDNWAKLRRDYPDALLTNYYLWPAVQLANFYLVPLHYRLAV 276
Query: 781 INGLTLGWDTYLSYLKYRV 837
+ + + W++YLS+ +R+
Sbjct: 277 VQCVAVIWNSYLSWKAHRL 295
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,904,984
Number of extensions: 2043651
Number of successful extensions: 11521
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11367
Number of HSP's successfully gapped: 4
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013674
(1165 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123553.1| PREDICTED: mpv17-like protein 2-like [Sus sc... 502 e-142
>ref|XP_003123553.1| PREDICTED: mpv17-like protein 2-like [Sus scrofa].
Length = 235
Score = 502 bits (1292), Expect = e-142
Identities = 235/235 (100%), Positives = 235/235 (100%)
Frame = +1
Query: 226 MGWAAGAPVPGSQRTMASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQ 405
MGWAAGAPVPGSQRTMASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQ
Sbjct: 1 MGWAAGAPVPGSQRTMASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQ 60
Query: 406 SWEIRARPGQKFDPRRSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVD 585
SWEIRARPGQKFDPRRSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVD
Sbjct: 61 SWEIRARPGQKFDPRRSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVD 120
Query: 586 QVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQ 765
QVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQ
Sbjct: 121 QVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQ 180
Query: 766 FRVTYINGLTLGWDTYLSYLKYRVPSPLTPPGCVVLGTVQTELPPTPTRCQTGQD 930
FRVTYINGLTLGWDTYLSYLKYRVPSPLTPPGCVVLGTVQTELPPTPTRCQTGQD
Sbjct: 181 FRVTYINGLTLGWDTYLSYLKYRVPSPLTPPGCVVLGTVQTELPPTPTRCQTGQD 235
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,007,352
Number of extensions: 1293062
Number of successful extensions: 7325
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7252
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013674
(1165 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_898993.1| mpv17-like protein 2 [Mus musculus]. 364 e-101
Alignment gi|NP_291042.2| mpv17-like protein [Mus musculus]. 82 1e-15
Alignment gi|NP_032648.1| protein Mpv17 [Mus musculus]. 75 8e-14
Alignment gi|NP_033019.2| peroxisomal membrane protein 2 [Mus musculus]. 75 1e-13
>ref|NP_898993.1| mpv17-like protein 2 [Mus musculus].
Length = 200
Score = 364 bits (934), Expect = e-101
Identities = 166/198 (83%), Positives = 178/198 (89%)
Frame = +1
Query: 271 MASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPR 450
MA GGWRW R LAAG+PLFQGRALL+TNTLGCG LMAAGDG RQ WE+RARPGQ+F R
Sbjct: 1 MALGGWRWARKALAAGRPLFQGRALLLTNTLGCGVLMAAGDGARQVWEVRARPGQRFSAR 60
Query: 451 RSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVDQVVASPMLGVWYFLG 630
RSASMFAVGCSMGPFLH+WYLWLDRLLPASG R LP+V++KVLVDQ VASP+LGVWYFLG
Sbjct: 61 RSASMFAVGCSMGPFLHFWYLWLDRLLPASGLRSLPSVMKKVLVDQTVASPILGVWYFLG 120
Query: 631 LGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDT 810
LG LEGQTL+ESCQELR KFW+FYKADWCVWPAAQLVNFLF+P FRVTYINGLTLGWDT
Sbjct: 121 LGSLEGQTLEESCQELRAKFWDFYKADWCVWPAAQLVNFLFIPSHFRVTYINGLTLGWDT 180
Query: 811 YLSYLKYRVPSPLTPPGC 864
YLSYLKY VP PL PGC
Sbjct: 181 YLSYLKYWVPEPLQTPGC 198
>ref|NP_291042.2| mpv17-like protein [Mus musculus].
Length = 194
Score = 81.6 bits (200), Expect = 1e-15
Identities = 53/157 (33%), Positives = 75/157 (47%)
Frame = +1
Query: 352 TNTLGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFAVGCSMGPFLHYWYLWLDRLL 531
TN L L +AGD ++Q +R P RR A++ G F + W L+R L
Sbjct: 19 TNVLLYAGLFSAGDALQQ--RLRGGPADWRQTRRVATLAVT--FHGNFNYVWLRLLERAL 74
Query: 532 PASGFRGLPNVLRKVLVDQVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKAD 711
P R VL KVL DQ V P+ +++G+ L+G+ D+ +L+ KFW YK+
Sbjct: 75 PGRAPR---TVLAKVLCDQTVGGPIALSAFYVGMSVLQGK--DDIFLDLKQKFWNTYKSG 129
Query: 712 WCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSY 822
WP QL NF VP +R Y W T+L +
Sbjct: 130 LMYWPFVQLTNFSLVPVHWRTAYTGLCAFLWATFLCF 166
>ref|NP_032648.1| protein Mpv17 [Mus musculus].
Length = 176
Score = 75.5 bits (184), Expect = 8e-14
Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Frame = +1
Query: 361 LGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFAVGCS-MGPFLHYWYLWLDRLLPA 537
L G+LM GD + Q + R Q+ R+ +M ++GC +GP + WY LD L+P
Sbjct: 21 LTAGSLMGVGDMISQQL-VERRGLQQHQAGRTLTMVSLGCGFVGPVVGGWYKVLDHLIPG 79
Query: 538 SGFRGLPNVLRKVLVDQVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKADWC 717
+ + L+K+L+DQ +P + +G L G + ++ +L+ + + ++
Sbjct: 80 TT---KVHALKKMLLDQGGFAPCFLGCFLPLVGILNGMSAQDNWAKLKRDYPDALITNYY 136
Query: 718 VWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSY 822
+WPA QL NF VP +R+ + + + W++YLS+
Sbjct: 137 LWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSW 171
>ref|NP_033019.2| peroxisomal membrane protein 2 [Mus musculus].
Length = 193
Score = 74.7 bits (182), Expect = 1e-13
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Frame = +1
Query: 346 LVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFAVGCSM-GPFLHYWYLWLD 522
++T + G L A G+ + Q+ E R + Q + G + GP HY YL+++
Sbjct: 34 VLTKAVSSGILSALGNLLAQTIEKRKKDSQNLEVSGLLRYLVYGLFVTGPLSHYLYLFME 93
Query: 523 RLLPASGFRGLPNV----LRKVLVDQVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKF 690
+P P V ++++L+D++ +P + +F + LEG+ + ++R F
Sbjct: 94 YSVP-------PEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLLEGKNVSVFVAKMRSGF 146
Query: 691 WEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYL 825
W + +W +W Q +N +VP QFRV + N L W YL+ L
Sbjct: 147 WPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLASL 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,196,347
Number of extensions: 1601915
Number of successful extensions: 8380
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8221
Number of HSP's successfully gapped: 4
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013674
(1165 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_116072.2| mpv17-like protein 2 [Homo sapiens]. 383 e-106
Alignment gi|NP_001121895.1| mpv17-like protein isoform 1 [Homo sapiens]. 79 1e-14
Alignment gi|NP_002428.1| protein Mpv17 [Homo sapiens]. 74 2e-13
Alignment gi|NP_061133.1| peroxisomal membrane protein 2 [Homo sapiens]. 73 4e-13
>ref|NP_116072.2| mpv17-like protein 2 [Homo sapiens].
Length = 206
Score = 383 bits (983), Expect = e-106
Identities = 181/203 (89%), Positives = 187/203 (92%)
Frame = +1
Query: 271 MASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPR 450
MA GGWR LR LL+AGQ LFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQ FDPR
Sbjct: 1 MARGGWRRLRRLLSAGQLLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQVFDPR 60
Query: 451 RSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVDQVVASPMLGVWYFLG 630
RSASMFAVGCSMGPFLHYWYL LDRL PASG RG PNVL+KVLVDQ+VASP+LGVWYFLG
Sbjct: 61 RSASMFAVGCSMGPFLHYWYLSLDRLFPASGLRGFPNVLKKVLVDQLVASPLLGVWYFLG 120
Query: 631 LGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDT 810
LG LEGQT+ ESCQELR+KFWEFYKADWCVWPAAQ VNFLFVPPQFRVTYINGLTLGWDT
Sbjct: 121 LGCLEGQTVGESCQELREKFWEFYKADWCVWPAAQFVNFLFVPPQFRVTYINGLTLGWDT 180
Query: 811 YLSYLKYRVPSPLTPPGCVVLGT 879
YLSYLKYR P PLTPPGCV L T
Sbjct: 181 YLSYLKYRSPVPLTPPGCVALDT 203
>ref|NP_001121895.1| mpv17-like protein isoform 1 [Homo sapiens].
Length = 196
Score = 78.6 bits (192), Expect = 1e-14
Identities = 51/157 (32%), Positives = 79/157 (50%)
Frame = +1
Query: 352 TNTLGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFAVGCSMGPFLHYWYLWLDRLL 531
TN L G+L++AGD ++Q ++ R RR A++ V F + W L+R L
Sbjct: 19 TNVLLYGSLVSAGDALQQ--RLQGREANWRQTRRVATL--VVTFHANFNYVWLRLLERAL 74
Query: 532 PASGFRGLPNVLRKVLVDQVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKAD 711
P L L K+L DQVV +P+ +++G+ L+G+ D+ +L+ KFW Y +
Sbjct: 75 PGRAPHAL---LAKLLCDQVVGAPIAVSAFYVGMSILQGK--DDIFLDLKQKFWNTYLSG 129
Query: 712 WCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSY 822
WP QL NF VP Q+R Y W T++ +
Sbjct: 130 LMYWPFVQLTNFSLVPVQWRTAYAGVCGFLWATFICF 166
>ref|NP_002428.1| protein Mpv17 [Homo sapiens].
Length = 176
Score = 74.3 bits (181), Expect = 2e-13
Identities = 46/160 (28%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Frame = +1
Query: 361 LGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFAVGCS-MGPFLHYWYLWLDRLLPA 537
L G+LM GD + Q + R Q+ R+ +M ++GC +GP + WY LDR +P
Sbjct: 21 LTAGSLMGLGDIISQQL-VERRGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPG 79
Query: 538 SGFRGLPNVLRKVLVDQVVASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKADWC 717
+ + L+K+L+DQ +P + +G L G + ++ +L+ + + ++
Sbjct: 80 TT---KVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNWAKLQRDYPDALITNYY 136
Query: 718 VWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYLKYRV 837
+WPA QL NF VP +R+ + + + W++YLS+ +R+
Sbjct: 137 LWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 176
>ref|NP_061133.1| peroxisomal membrane protein 2 [Homo sapiens].
Length = 195
Score = 73.2 bits (178), Expect = 4e-13
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 7/198 (3%)
Frame = +1
Query: 253 PGSQRTMASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARP- 429
P + R A G L A LF ++T G L A G+ + Q E + +
Sbjct: 3 PAASRLRAEAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKE 62
Query: 430 -GQKFDPRRSASMFAVGCSM-GPFLHYWYLWLDRLLPASGFRGLPNV----LRKVLVDQV 591
+ D G GP H++Y +++ +P P V LR++L+D++
Sbjct: 63 NSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIP-------PEVPLAGLRRLLLDRL 115
Query: 592 VASPMLGVWYFLGLGYLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFR 771
V +P + +FL + +LEG+ ++R FW + +W VW Q +N +VP +FR
Sbjct: 116 VFAPAFLMLFFLIMNFLEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFR 175
Query: 772 VTYINGLTLGWDTYLSYL 825
V + N L W YL+ L
Sbjct: 176 VLFANLAALFWYAYLASL 193
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,440,193
Number of extensions: 1965726
Number of successful extensions: 10511
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10371
Number of HSP's successfully gapped: 4
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013674
(1165 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 906 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 906 bits (457), Expect = 0.0
Identities = 457/457 (100%)
Strand = Plus / Minus
Query: 1 tctgtaaagacgcggaaggctgagcgaggcttctttcggcgattggccccaggacgggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59152443 tctgtaaagacgcggaaggctgagcgaggcttctttcggcgattggccccaggacgggat 59152384
Query: 61 ccggagctttgattcgataatacctggtaaagtgacacgcccatcggtcggcgattgacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59152383 ccggagctttgattcgataatacctggtaaagtgacacgcccatcggtcggcgattgacg 59152324
Query: 121 cgggtgactggaggagggcatgcaaatcaggaagacagcgtgcgattggcaagcactgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59152323 cgggtgactggaggagggcatgcaaatcaggaagacagcgtgcgattggcaagcactgca 59152264
Query: 181 cagggcaggcatccccggcgcggcaatcacttgcgattggtcggcatgggatgggcggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59152263 cagggcaggcatccccggcgcggcaatcacttgcgattggtcggcatgggatgggcggcc 59152204
Query: 241 ggtgcgccggttcccgggtcccagcggacgatggcgtctggtggctggcgctggctccgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59152203 ggtgcgccggttcccgggtcccagcggacgatggcgtctggtggctggcgctggctccgc 59152144
Query: 301 agcctgttggccgcggggcagcctctgttccaaggccgtgcgctgctcgtcaccaacacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59152143 agcctgttggccgcggggcagcctctgttccaaggccgtgcgctgctcgtcaccaacacg 59152084
Query: 361 ctgggctgcggcgctctcatggcggccggagacggcgtgcgccagtcctgggagatccgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59152083 ctgggctgcggcgctctcatggcggccggagacggcgtgcgccagtcctgggagatccgc 59152024
Query: 421 gcccggccgggccagaagttcgaccctcggcgttcag 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 59152023 gcccggccgggccagaagttcgaccctcggcgttcag 59151987
Score = 650 bits (328), Expect = 0.0
Identities = 331/332 (99%)
Strand = Plus / Minus
Query: 834 ggtcccaagccccctgacgcccccaggctgtgtggtcctgggcaccgtgcagactgagct 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59149650 ggtcccaagccccctgacgcccccaggctgtgtggtcctgggcaccgtgcagactgagct 59149591
Query: 894 gccccctacccccaccagatgccagacagggcaagactgaccctcagctgacccaccacc 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59149590 gccccctacccccaccagatgccagacagggcaagactgaccctcagctgacccaccacc 59149531
Query: 954 tgggaaggaaggggaacaggctcctgggccaagtcttaacccagtcctgattcccaggca 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59149530 tgggaaggaaggggaacaggctcctgggccaagtcttaacccagtcctgattcccaggca 59149471
Query: 1014 tctggttgggctgccccttccaagcccactgccaggcctcagtttggggaatctggaaca 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59149470 tctggttgggctgccccttccaagcccactgccaggcctcagtttggggaatctggaaca 59149411
Query: 1074 cagccatgaagatgaacagtcatcccccagcccttgccagggagcctcaaatgactggtg 1133
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 59149410 cagccatgaagatgaacagtcatcccccagcccttgccagggagcctcaagtgactggtg 59149351
Query: 1134 acagatgttccatcctcagcactgggccccag 1165
||||||||||||||||||||||||||||||||
Sbjct: 59149350 acagatgttccatcctcagcactgggccccag 59149319
Score = 347 bits (175), Expect = 8e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 455 cagcgagcatgtttgcggtgggctgcagcatgggccccttcctgcactactggtacctct 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59151431 cagcgagcatgtttgcggtgggctgcagcatgggccccttcctgcactactggtacctct 59151372
Query: 515 ggctggaccgcctgctccctgcatccggcttccgtggcctcccaaacgtcctccggaagg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59151371 ggctggaccgcctgctccctgcatccggcttccgtggcctcccaaacgtcctccggaagg 59151312
Query: 575 tcctcgtcgaccaagtagtggcctctcccatgctgggcgtctggtatttcttggg 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59151311 tcctcgtcgaccaagtagtggcctctcccatgctgggcgtctggtatttcttggg 59151257
Score = 222 bits (112), Expect = 3e-55
Identities = 126/133 (94%)
Strand = Plus / Minus
Query: 704 aggctgactggtgcgtgtggcctgctgcgcagctggtgaatttcctcttcgtgnnnnnnn 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59150102 aggctgactggtgcgtgtggcctgctgcgcagctggtgaatttcctcttcgtgccccccc 59150043
Query: 764 agttccgagtcacctatatcaacggcctgacgctgggctgggacacgtacctctcctatc 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59150042 agttccgagtcacctatatcaacggcctgacgctgggctgggacacgtacctctcctatc 59149983
Query: 824 tgaaataccgggt 836
|||||||||||||
Sbjct: 59149982 tgaaataccgggt 59149970
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 628 ggccttggatacctggagggccagaccctggatgagagctgccaggagctacgggacaag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59150308 ggccttggatacctggagggccagaccctggatgagagctgccaggagctacgggacaag 59150249
Query: 688 ttctgggaattctacaagg 706
|||||||||||||||||||
Sbjct: 59150248 ttctgggaattctacaagg 59150230
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,605,041
Number of extensions: 169
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 5
Length of query: 1165
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1144
Effective length of database: 2,808,413,156
Effective search space: 3212824650464
Effective search space used: 3212824650464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)