Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013678
(1204 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851288.1| PREDICTED: similar to Acyl-protein thioesterase... 328 5e-90
Alignment gi|XP_544500.2| PREDICTED: similar to Acyl-protein thioesterase... 314 1e-85
Alignment gi|XP_545715.2| PREDICTED: similar to lysophospholipase-like 1 ... 107 2e-23
>ref|XP_851288.1| PREDICTED: similar to Acyl-protein thioesterase 1
(Lysophospholipase I) [Canis familiaris].
Length = 216
Score = 328 bits (842), Expect = 5e-90
Identities = 158/183 (86%), Positives = 169/183 (92%)
Frame = +2
Query: 296 HGWAEAFAGIRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAE 475
HGWAEAF GIRS+HIKYICPHAPVMP+TLNMNMAMPSWF+I GLSPDS EDE GIKQAAE
Sbjct: 3 HGWAEAFVGIRSSHIKYICPHAPVMPITLNMNMAMPSWFDIFGLSPDSQEDEPGIKQAAE 62
Query: 476 NVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGVTALSCWLPLRSSFPE 655
NVK+LIEQEVKNGIPSNRI+LGGFSQGGALSLYTALTT QKLAGVTALSCWLPLR+SFP+
Sbjct: 63 NVKALIEQEVKNGIPSNRIVLGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRTSFPQ 122
Query: 656 CPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQE 835
PISGVNRDI ILQCHG D LVPL F SLT E+LKTLVNPANVTFKTYEGMMH SCQQE
Sbjct: 123 GPISGVNRDISILQCHGDCDFLVPLTFASLTAEKLKTLVNPANVTFKTYEGMMHGSCQQE 182
Query: 836 MLD 844
+++
Sbjct: 183 LIN 185
>ref|XP_544500.2| PREDICTED: similar to Acyl-protein thioesterase 2
(Lysophospholipase II) (LPL-I) [Canis familiaris].
Length = 285
Score = 314 bits (804), Expect = 1e-85
Identities = 150/236 (63%), Positives = 182/236 (77%), Gaps = 3/236 (1%)
Frame = +2
Query: 182 SSRCMCGNNMSAPL---PXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYIC 352
S +CMCGN MS PL IFLHGLGDTGH WA+A + IR H+KYIC
Sbjct: 51 SLQCMCGNTMSVPLLTDAATVSGAERETAAVIFLHGLGDTGHSWADALSTIRLPHVKYIC 110
Query: 353 PHAPVMPVTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRI 532
PHAP +PVTLNM M MPSWF+++GLSPD+ EDE GIK+AAEN+K+LIE E+KNGIP+NRI
Sbjct: 111 PHAPRIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRI 170
Query: 533 ILGGFSQGGALSLYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVL 712
+LGGFSQGGALSLYTALT LAG+ ALSCWLPL +FP+ +G +D+ ILQCHG L
Sbjct: 171 VLGGFSQGGALSLYTALTCPHPLAGIVALSCWLPLHRAFPQA-ANGSAKDLAILQCHGEL 229
Query: 713 DPLVPLMFGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPI 880
DP+VP+ FG+LT E+L+++V PA V FKTY G+MHSSC QEM VK+F+EKLLPP+
Sbjct: 230 DPMVPVRFGALTAEKLRSVVTPARVQFKTYPGVMHSSCPQEMAAVKEFLEKLLPPV 285
>ref|XP_545715.2| PREDICTED: similar to lysophospholipase-like 1 [Canis familiaris].
Length = 236
Score = 107 bits (268), Expect = 2e-23
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 5/208 (2%)
Frame = +2
Query: 266 IFLHGLGDTGHG---WAEAFAG--IRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLS 430
IFLHG GD+G G W + + HIK I P AP P T WF+ + +S
Sbjct: 26 IFLHGSGDSGQGLRTWIKQVLNQELTFQHIKIIYPTAPPRPYTPMKGGISNVWFDRLKIS 85
Query: 431 PDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGV 610
D E I + + LI+ EVK+GI NRI++GGFS GG ++++ A HQ +AGV
Sbjct: 86 NDCPEHLESINVMCQVLTDLIDDEVKSGIKKNRILVGGFSMGGCMAMHLAYRNHQDVAGV 145
Query: 611 TALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTLVNPANVT 790
ALS +L S+ + + QCHG D LV +G T LK+L +
Sbjct: 146 FALSSFLNKTSAVYQALQESDGVLPELFQCHGTADELVLHSWGEETNSMLKSL--GVSTK 203
Query: 791 FKTYEGMMHSSCQQEMLDVKQFIEKLLP 874
F ++ G+ H + E+ +K +I LP
Sbjct: 204 FHSFPGVYHELSKAELEKLKSWILAKLP 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,744,679
Number of extensions: 970823
Number of successful extensions: 2608
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2604
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 296
Effective length of database: 15,374,224
Effective search space: 4550770304
Effective search space used: 4550770304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013678
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013678
(1204 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029860.1| acyl-protein thioesterase 1 [Bos taurus]. 411 e-115
Alignment gi|XP_002686648.1| PREDICTED: acyl-protein thioesterase 1-like ... 368 e-102
Alignment gi|XP_001250702.2| PREDICTED: acyl-protein thioesterase 1-like ... 368 e-102
Alignment gi|XP_001256052.2| PREDICTED: acyl-protein thioesterase 1-like ... 368 e-102
Alignment gi|NP_001073831.1| acyl-protein thioesterase 2 [Bos taurus]. 309 3e-84
Alignment gi|NP_001092529.1| lysophospholipase-like protein 1 [Bos taurus]. 106 4e-23
>ref|NP_001029860.1| acyl-protein thioesterase 1 [Bos taurus].
Length = 230
Score = 411 bits (1057), Expect = e-115
Identities = 199/230 (86%), Positives = 210/230 (91%)
Frame = +2
Query: 194 MCGNNMSAPLPXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMP 373
MCGNNMSAPLP IFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMP
Sbjct: 1 MCGNNMSAPLPAIVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMP 60
Query: 374 VTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQ 553
VTLNMNMAMPSWF+IIGLSPDSLEDETGIKQAAENVK+LI+QEVKNGIPSNRIILGGFSQ
Sbjct: 61 VTLNMNMAMPSWFDIIGLSPDSLEDETGIKQAAENVKALIDQEVKNGIPSNRIILGGFSQ 120
Query: 554 GGALSLYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLM 733
GGALSLYTALTT QKLAGVTALSCWLPLR+SFP+ PI GVNRDI ILQCHG LDPLVPLM
Sbjct: 121 GGALSLYTALTTQQKLAGVTALSCWLPLRASFPQGPIGGVNRDISILQCHGDLDPLVPLM 180
Query: 734 FGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPID 883
FGSLT E+LKTLVNPANVTF+TY GMMHSSCQQEM+D+KQFI+KLLPP+D
Sbjct: 181 FGSLTAEKLKTLVNPANVTFRTYAGMMHSSCQQEMMDIKQFIDKLLPPVD 230
>ref|XP_002686648.1| PREDICTED: acyl-protein thioesterase 1-like [Bos taurus].
Length = 225
Score = 368 bits (944), Expect = e-102
Identities = 183/224 (81%), Positives = 195/224 (87%)
Frame = +2
Query: 209 MSAPLPXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMPVTLNM 388
MSA LP IFLHGLGDTGHGWAEAFA IRSAHIKYICPHAPVMPVTLNM
Sbjct: 1 MSALLPAIVPAILKATAAMIFLHGLGDTGHGWAEAFARIRSAHIKYICPHAPVMPVTLNM 60
Query: 389 NMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALS 568
NMAMPSWF+IIGLSPDSLEDETGIKQAAENVK LI+QEVKNGIPSNRIILGGFSQGGALS
Sbjct: 61 NMAMPSWFDIIGLSPDSLEDETGIKQAAENVKPLIDQEVKNGIPSNRIILGGFSQGGALS 120
Query: 569 LYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLT 748
LYTALTT QKLAGVT LS WLPL++ FP+ P SGVNR+I ILQCH L PLV LMFGSLT
Sbjct: 121 LYTALTTQQKLAGVTTLSYWLPLQALFPQGPTSGVNREISILQCHRDLVPLVTLMFGSLT 180
Query: 749 VERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPI 880
E+LKTLVNPANVTF+TY GMMHSSCQQEM+D+KQFI+KLLPP+
Sbjct: 181 AEKLKTLVNPANVTFRTYAGMMHSSCQQEMMDIKQFIDKLLPPV 224
>ref|XP_001250702.2| PREDICTED: acyl-protein thioesterase 1-like [Bos taurus].
Length = 225
Score = 368 bits (944), Expect = e-102
Identities = 183/224 (81%), Positives = 195/224 (87%)
Frame = +2
Query: 209 MSAPLPXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMPVTLNM 388
MSA LP IFLHGLGDTGHGWAEAFA IRSAHIKYICPHAPVMPVTLNM
Sbjct: 1 MSALLPAIVPAILKATAAMIFLHGLGDTGHGWAEAFARIRSAHIKYICPHAPVMPVTLNM 60
Query: 389 NMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALS 568
NMAMPSWF+IIGLSPDSLEDETGIKQAAENVK LI+QEVKNGIPSNRIILGGFSQGGALS
Sbjct: 61 NMAMPSWFDIIGLSPDSLEDETGIKQAAENVKPLIDQEVKNGIPSNRIILGGFSQGGALS 120
Query: 569 LYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLT 748
LYTALTT QKLAGVT LS WLPL++ FP+ P SGVNR+I ILQCH L PLV LMFGSLT
Sbjct: 121 LYTALTTQQKLAGVTTLSYWLPLQALFPQGPTSGVNREISILQCHRDLVPLVTLMFGSLT 180
Query: 749 VERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPI 880
E+LKTLVNPANVTF+TY GMMHSSCQQEM+D+KQFI+KLLPP+
Sbjct: 181 AEKLKTLVNPANVTFRTYAGMMHSSCQQEMMDIKQFIDKLLPPV 224
>ref|XP_001256052.2| PREDICTED: acyl-protein thioesterase 1-like [Bos taurus].
Length = 225
Score = 368 bits (944), Expect = e-102
Identities = 183/224 (81%), Positives = 195/224 (87%)
Frame = +2
Query: 209 MSAPLPXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMPVTLNM 388
MSA LP IFLHGLGDTGHGWAEAFA IRSAHIKYICPHAPVMPVTLNM
Sbjct: 1 MSALLPAIVPAILKATAAMIFLHGLGDTGHGWAEAFARIRSAHIKYICPHAPVMPVTLNM 60
Query: 389 NMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALS 568
NMAMPSWF+IIGLSPDSLEDETGIKQAAENVK LI+QEVKNGIPSNRIILGGFSQGGALS
Sbjct: 61 NMAMPSWFDIIGLSPDSLEDETGIKQAAENVKPLIDQEVKNGIPSNRIILGGFSQGGALS 120
Query: 569 LYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLT 748
LYTALTT QKLAGVT LS WLPL++ FP+ P SGVNR+I ILQCH L PLV LMFGSLT
Sbjct: 121 LYTALTTQQKLAGVTTLSYWLPLQALFPQGPTSGVNREISILQCHRDLVPLVTLMFGSLT 180
Query: 749 VERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPI 880
E+LKTLVNPANVTF+TY GMMHSSCQQEM+D+KQFI+KLLPP+
Sbjct: 181 AEKLKTLVNPANVTFRTYAGMMHSSCQQEMMDIKQFIDKLLPPV 224
>ref|NP_001073831.1| acyl-protein thioesterase 2 [Bos taurus].
Length = 231
Score = 309 bits (792), Expect = 3e-84
Identities = 148/232 (63%), Positives = 179/232 (77%), Gaps = 3/232 (1%)
Frame = +2
Query: 194 MCGNNMSAPL---PXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAP 364
MCGN MS PL IFLHGLGDTGH WA+A + IR H+KYICPHAP
Sbjct: 1 MCGNTMSVPLLTDAATVSGAERETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAP 60
Query: 365 VMPVTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGG 544
+PVTLNM M MPSWF+++GLSPD+ EDE GIK+AAEN+K+LIE E+KNGIP+NRI+LGG
Sbjct: 61 RIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGG 120
Query: 545 FSQGGALSLYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLV 724
FSQGGALSLYTALT LAG+ ALSCWLPL +FP+ +G +D+ ILQCHG LDP+V
Sbjct: 121 FSQGGALSLYTALTCPHPLAGIVALSCWLPLHRAFPQA-ANGSAKDLTILQCHGELDPMV 179
Query: 725 PLMFGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPI 880
P+ FG+LT E+L+++V PA V FKTY G+MHSSC QEM VK+F+EKLLPP+
Sbjct: 180 PVRFGALTAEKLRSVVTPARVQFKTYPGVMHSSCPQEMAAVKEFLEKLLPPV 231
>ref|NP_001092529.1| lysophospholipase-like protein 1 [Bos taurus].
Length = 232
Score = 106 bits (265), Expect = 4e-23
Identities = 72/208 (34%), Positives = 102/208 (49%), Gaps = 5/208 (2%)
Frame = +2
Query: 266 IFLHGLGDTGHG---WAEAFAG--IRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLS 430
IFLHG GD+G G W + + HIK I P AP P T WF+ + +S
Sbjct: 26 IFLHGSGDSGQGLRTWIKQVLNQDLTFQHIKVIYPTAPPRPYTPLRGGISNVWFDRLKIS 85
Query: 431 PDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGV 610
D E I + + LI+ EVK GI NRI++GGFS GG ++++ A HQ +AGV
Sbjct: 86 NDCPEHLESIDVMCQVLTDLIDDEVKTGIKKNRILVGGFSMGGCMAMHLAYRNHQDVAGV 145
Query: 611 TALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTLVNPANVT 790
ALS +L S+ + + QCHG D LV +G T LK+L +
Sbjct: 146 FALSSFLNKASAVYQALQKSDGVLPELFQCHGTADELVLHSWGEETNSMLKSL--GVSTK 203
Query: 791 FKTYEGMMHSSCQQEMLDVKQFIEKLLP 874
F ++ G+ H + E+ +K +I LP
Sbjct: 204 FHSFPGVYHELSKAELEKLKSWILTKLP 231
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,550,219
Number of extensions: 1019658
Number of successful extensions: 2631
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2628
Number of HSP's successfully gapped: 6
Length of query: 401
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 297
Effective length of database: 14,240,222
Effective search space: 4229345934
Effective search space used: 4229345934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013678
(1204 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927278.3| PREDICTED: acyl-protein thioesterase 1 [Sus ... 422 e-118
Alignment gi|XP_003356251.1| PREDICTED: acyl-protein thioesterase 2-like ... 310 1e-84
Alignment gi|XP_003130549.2| PREDICTED: lysophospholipase-like protein 1-... 102 3e-22
Alignment gi|XP_003357674.1| PREDICTED: lysophospholipase-like protein 1-... 96 4e-20
>ref|XP_001927278.3| PREDICTED: acyl-protein thioesterase 1 [Sus scrofa].
Length = 253
Score = 422 bits (1086), Expect = e-118
Identities = 206/206 (100%), Positives = 206/206 (100%)
Frame = +2
Query: 266 IFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLSPDSLE 445
IFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLSPDSLE
Sbjct: 48 IFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLSPDSLE 107
Query: 446 DETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGVTALSC 625
DETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGVTALSC
Sbjct: 108 DETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGVTALSC 167
Query: 626 WLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTLVNPANVTFKTYE 805
WLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTLVNPANVTFKTYE
Sbjct: 168 WLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTLVNPANVTFKTYE 227
Query: 806 GMMHSSCQQEMLDVKQFIEKLLPPID 883
GMMHSSCQQEMLDVKQFIEKLLPPID
Sbjct: 228 GMMHSSCQQEMLDVKQFIEKLLPPID 253
>ref|XP_003356251.1| PREDICTED: acyl-protein thioesterase 2-like [Sus scrofa].
Length = 231
Score = 310 bits (794), Expect = 1e-84
Identities = 148/232 (63%), Positives = 179/232 (77%), Gaps = 3/232 (1%)
Frame = +2
Query: 194 MCGNNMSAPL---PXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAP 364
MCGN MS PL IFLHGLGDTGH WA+A + IR H+KYICPHAP
Sbjct: 1 MCGNTMSVPLLTDAATVSGVERETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAP 60
Query: 365 VMPVTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGG 544
+PVTLNM M MPSWF+++GLSPD+ EDE GIK+AAEN+K+LIE E+KNGIP+NRI+LGG
Sbjct: 61 RIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEIKNGIPANRIVLGG 120
Query: 545 FSQGGALSLYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLV 724
FSQGGALSLYTALT LAG+ ALSCWLPL +FP+ +G +D+ ILQCHG LDP+V
Sbjct: 121 FSQGGALSLYTALTCPHPLAGIVALSCWLPLHRAFPQA-ANGSAKDLAILQCHGELDPMV 179
Query: 725 PLMFGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPI 880
P+ FG+LT E+L+++V PA V FKTY G+MHSSC QEM VK+F+EKLLPP+
Sbjct: 180 PVRFGALTAEKLRSVVTPARVQFKTYPGVMHSSCPQEMAAVKEFLEKLLPPV 231
>ref|XP_003130549.2| PREDICTED: lysophospholipase-like protein 1-like isoform 1 [Sus
scrofa].
Length = 232
Score = 102 bits (255), Expect = 3e-22
Identities = 71/208 (34%), Positives = 99/208 (47%), Gaps = 5/208 (2%)
Frame = +2
Query: 266 IFLHGLGDTGHG---WAEAFAG--IRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLS 430
IFLHG GD+G G W + + HIK I P AP P T WF+ +S
Sbjct: 26 IFLHGSGDSGQGLRTWIKQVLNQDLTFQHIKVIYPTAPPRPYTPLKGGISNVWFDRFKIS 85
Query: 431 PDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGV 610
D E I + + LI EVK+GI NRI++GGFS GG ++++ A HQ +AGV
Sbjct: 86 NDCPEHLESIDVTCQVLTDLINDEVKSGIRKNRILIGGFSMGGCMAMHLAFRNHQDVAGV 145
Query: 611 TALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTLVNPANVT 790
ALS +L S+ + + QCHG D LV +G T L +L +
Sbjct: 146 FALSSFLNTASAVYQALQQSDGLLPELFQCHGTADELVLHAWGEETNSTLTSL--GVSTR 203
Query: 791 FKTYEGMMHSSCQQEMLDVKQFIEKLLP 874
F + G+ H + E+ +K +I LP
Sbjct: 204 FHSLPGVHHELSKAELEKLKSWILTKLP 231
>ref|XP_003357674.1| PREDICTED: lysophospholipase-like protein 1-like isoform 2 [Sus
scrofa].
Length = 241
Score = 95.9 bits (237), Expect = 4e-20
Identities = 63/173 (36%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Frame = +2
Query: 266 IFLHGLGDTGHG---WAEAFAG--IRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLS 430
IFLHG GD+G G W + + HIK I P AP P T WF+ +S
Sbjct: 26 IFLHGSGDSGQGLRTWIKQVLNQDLTFQHIKVIYPTAPPRPYTPLKGGISNVWFDRFKIS 85
Query: 431 PDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGV 610
D E I + + LI EVK+GI NRI++GGFS GG ++++ A HQ +AGV
Sbjct: 86 NDCPEHLESIDVTCQVLTDLINDEVKSGIRKNRILIGGFSMGGCMAMHLAFRNHQDVAGV 145
Query: 611 TALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTL 769
ALS +L S+ + + QCHG D LV +G T L +L
Sbjct: 146 FALSSFLNTASAVYQALQQSDGLLPELFQCHGTADELVLHAWGEETNSTLTSL 198
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,524,795
Number of extensions: 767082
Number of successful extensions: 1577
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 4
Length of query: 401
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,829,335
Effective search space: 2648800500
Effective search space used: 2648800500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013678
(1204 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032892.1| acyl-protein thioesterase 1 [Mus musculus]. 392 e-109
Alignment gi|NP_036072.1| acyl-protein thioesterase 2 [Mus musculus]. 311 8e-85
Alignment gi|NP_666218.2| lysophospholipase-like protein 1 [Mus musculus]. 98 1e-20
>ref|NP_032892.1| acyl-protein thioesterase 1 [Mus musculus].
Length = 230
Score = 392 bits (1008), Expect = e-109
Identities = 189/230 (82%), Positives = 203/230 (88%)
Frame = +2
Query: 194 MCGNNMSAPLPXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMP 373
MCGNNMSAP+P IFLHGLGDTGHGWAEAFAGI+S HIKYICPHAPVMP
Sbjct: 1 MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMP 60
Query: 374 VTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQ 553
VTLNMNMAMPSWF+I+GLSPDS EDE+GIKQAAE VK+LI+QEVKNGIPSNRIILGGFSQ
Sbjct: 61 VTLNMNMAMPSWFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSNRIILGGFSQ 120
Query: 554 GGALSLYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLM 733
GGALSLYTALTT QKLAGVTALSCWLPLR+SF + PI+ NRDI +LQCHG DPLVPLM
Sbjct: 121 GGALSLYTALTTQQKLAGVTALSCWLPLRASFSQGPINSANRDISVLQCHGDCDPLVPLM 180
Query: 734 FGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPID 883
FGSLTVERLK L+NPANVTFK YEGMMHSSCQQEM+DVK FI+KLLPPID
Sbjct: 181 FGSLTVERLKALINPANVTFKIYEGMMHSSCQQEMMDVKHFIDKLLPPID 230
>ref|NP_036072.1| acyl-protein thioesterase 2 [Mus musculus].
Length = 231
Score = 311 bits (796), Expect = 8e-85
Identities = 149/232 (64%), Positives = 179/232 (77%), Gaps = 3/232 (1%)
Frame = +2
Query: 194 MCGNNMSAPL---PXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAP 364
MCGN MS PL IFLHGLGDTGH WA+A + IR H+KYICPHAP
Sbjct: 1 MCGNTMSVPLLTDAATVSGAERETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAP 60
Query: 365 VMPVTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGG 544
+PVTLNM M MPSWF+++GLSPD+ EDE GIK+AAEN+K+LIE E+KNGIP+NRI+LGG
Sbjct: 61 RIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGG 120
Query: 545 FSQGGALSLYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLV 724
FSQGGALSLYTALT LAG+ ALSCWLPL +FP+ +G +D+ ILQCHG LDP+V
Sbjct: 121 FSQGGALSLYTALTCPHPLAGIVALSCWLPLHRNFPQA-ANGSAKDLAILQCHGELDPMV 179
Query: 725 PLMFGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPI 880
P+ FG+LT E+L+T+V PA V FKTY G+MHSSC QEM VK+F+EKLLPP+
Sbjct: 180 PVRFGALTAEKLRTVVTPARVQFKTYPGVMHSSCPQEMAAVKEFLEKLLPPV 231
>ref|NP_666218.2| lysophospholipase-like protein 1 [Mus musculus].
Length = 239
Score = 98.2 bits (243), Expect = 1e-20
Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 5/208 (2%)
Frame = +2
Query: 266 IFLHGLGDTGHGWAEAFAGIRSA-----HIKYICPHAPVMPVTLNMNMAMPSWFNIIGLS 430
IFLHG G +G G E + + HIK I P AP P T WF+ +S
Sbjct: 26 IFLHGSGHSGQGQREWIKHVLNQDLTFQHIKIIYPTAPSRPYTPLKGGLSNVWFDRFKIS 85
Query: 431 PDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGV 610
D E I + + L+++EVK GI +RI++GGFS GG ++++ A +H +AGV
Sbjct: 86 MDCPEHLESIDSMCQVLSGLVDEEVKTGIQKSRILIGGFSMGGCMAMHLAYRSHPDVAGV 145
Query: 611 TALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLMFGSLTVERLKTLVNPANVT 790
LS +L S + G + QCHG D LV +G T +LK+L + T
Sbjct: 146 FVLSGFLNKASVVYQDLQQGGRMLPELFQCHGSADNLVLHAWGKETNSKLKSL--GVSTT 203
Query: 791 FKTYEGMMHSSCQQEMLDVKQFIEKLLP 874
F + + H + E+ +K +I LP
Sbjct: 204 FHSLPNLNHELNKTELEKLKSWILTRLP 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,550,246
Number of extensions: 823734
Number of successful extensions: 2168
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2162
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 297
Effective length of database: 12,493,815
Effective search space: 3710663055
Effective search space used: 3710663055
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013678
(1204 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006321.1| acyl-protein thioesterase 1 [Homo sapiens]. 403 e-112
Alignment gi|NP_009191.1| acyl-protein thioesterase 2 [Homo sapiens]. 309 3e-84
Alignment gi|NP_620149.1| lysophospholipase-like protein 1 [Homo sapiens]. 98 1e-20
>ref|NP_006321.1| acyl-protein thioesterase 1 [Homo sapiens].
Length = 230
Score = 403 bits (1035), Expect = e-112
Identities = 195/230 (84%), Positives = 207/230 (90%)
Frame = +2
Query: 194 MCGNNMSAPLPXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMP 373
MCGNNMS PLP IFLHGLGDTGHGWAEAFAGIRS+HIKYICPHAPV P
Sbjct: 1 MCGNNMSTPLPAIVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRP 60
Query: 374 VTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQ 553
VTLNMN+AMPSWF+IIGLSPDS EDE+GIKQAAEN+K+LI+QEVKNGIPSNRIILGGFSQ
Sbjct: 61 VTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQ 120
Query: 554 GGALSLYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLVPLM 733
GGALSLYTALTT QKLAGVTALSCWLPLR+SFP+ PI G NRDI ILQCHG DPLVPLM
Sbjct: 121 GGALSLYTALTTQQKLAGVTALSCWLPLRASFPQGPIGGANRDISILQCHGDCDPLVPLM 180
Query: 734 FGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPID 883
FGSLTVE+LKTLVNPANVTFKTYEGMMHSSCQQEM+DVKQFI+KLLPPID
Sbjct: 181 FGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKLLPPID 230
>ref|NP_009191.1| acyl-protein thioesterase 2 [Homo sapiens].
Length = 231
Score = 309 bits (792), Expect = 3e-84
Identities = 148/232 (63%), Positives = 179/232 (77%), Gaps = 3/232 (1%)
Frame = +2
Query: 194 MCGNNMSAPL---PXXXXXXXXXXXXXIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAP 364
MCGN MS PL IFLHGLGDTGH WA+A + IR H+KYICPHAP
Sbjct: 1 MCGNTMSVPLLTDAATVSGAERETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAP 60
Query: 365 VMPVTLNMNMAMPSWFNIIGLSPDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGG 544
+PVTLNM M MPSWF+++GLSPD+ EDE GIK+AAEN+K+LIE E+KNGIP+NRI+LGG
Sbjct: 61 RIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGG 120
Query: 545 FSQGGALSLYTALTTHQKLAGVTALSCWLPLRSSFPECPISGVNRDIPILQCHGVLDPLV 724
FSQGGALSLYTALT LAG+ ALSCWLPL +FP+ +G +D+ ILQCHG LDP+V
Sbjct: 121 FSQGGALSLYTALTCPHPLAGIVALSCWLPLHRAFPQA-ANGSAKDLAILQCHGELDPMV 179
Query: 725 PLMFGSLTVERLKTLVNPANVTFKTYEGMMHSSCQQEMLDVKQFIEKLLPPI 880
P+ FG+LT E+L+++V PA V FKTY G+MHSSC QEM VK+F+EKLLPP+
Sbjct: 180 PVRFGALTAEKLRSVVTPARVQFKTYPGVMHSSCPQEMAAVKEFLEKLLPPV 231
>ref|NP_620149.1| lysophospholipase-like protein 1 [Homo sapiens].
Length = 237
Score = 98.2 bits (243), Expect = 1e-20
Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 6/209 (2%)
Frame = +2
Query: 266 IFLHGLGDTGHG---WAEAFAG--IRSAHIKYICPHAPVMPVTLNMNMAMPSWFNIIGLS 430
IFLHG GD+G G W + + HIK I P AP T WF+ ++
Sbjct: 25 IFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKIT 84
Query: 431 PDSLEDETGIKQAAENVKSLIEQEVKNGIPSNRIILGGFSQGGALSLYTALTTHQKLAGV 610
D E I + + LI++EVK+GI NRI++GGFS GG ++++ A HQ +AGV
Sbjct: 85 NDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGV 144
Query: 611 TALSCWLPLRSSFPECPISGVNRDIP-ILQCHGVLDPLVPLMFGSLTVERLKTLVNPANV 787
ALS +L S+ + + N +P + QCHG D LV + T LK+L
Sbjct: 145 FALSSFLNKASAVYQA-LQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSL--GVTT 201
Query: 788 TFKTYEGMMHSSCQQEMLDVKQFIEKLLP 874
F ++ + H + E+ +K +I LP
Sbjct: 202 KFHSFPNVYHELSKTELDILKLWILTKLP 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,187,233
Number of extensions: 959657
Number of successful extensions: 2694
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2689
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 296
Effective length of database: 14,835,944
Effective search space: 4391439424
Effective search space used: 4391439424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013678
(1204 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 622 e-175
Sscrofa_Chr02 509 e-141
Sscrofa_Chr01 78 1e-11
>Sscrofa_Chr04
|| Length = 143465943
Score = 622 bits (314), Expect = e-175
Identities = 339/346 (97%), Gaps = 1/346 (0%)
Strand = Plus / Plus
Query: 828 aacaggagatgctggatgtcaagcagttcattgaaaaactgctgcctcccattgattgac 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84170901 aacaggagatgctggatgtcaagcagttcattgaaaaactgctgcctcccattgattgac 84170960
Query: 888 gtcaccgaggcctgcgtggatgtcacaccagcaccttcgtagtagaatatcaaccttttc 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84170961 gtcaccgaggcctgcgtggatgtcacaccagcaccttcgtagtagaatatcaaccttttc 84171020
Query: 948 ctgcgccccatcttgaaacctctaatgtttgcagtgttaaaatattttgcaaagacacac 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84171021 ctgcgccccatcttgaaacctctaatgtttgcagtgttaaaatattttgcaaagacacac 84171080
Query: 1008 caatgacacagactaaataaatctccttgtgggacatttaggatctcttaagtttcacta 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84171081 caatgacacagactaaataaatctccttgtgggacatttaggatctcttaagtttcacta 84171140
Query: 1068 tatgtgtttgtataaaatgatccggaatatactagtattaaataggtgaagcagctagct 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84171141 tatgtgtttgtataaaatgatccggaatatactagtattaaataggtgaagcagctagct 84171200
Query: 1128 tccttttccc-aatgtaattccacaaaaataaaaaatactgcaacc 1172
|| ||||||| |||||||||| ||||| | ||||||||||||||
Sbjct: 84171201 tctttttcccaaatgtaattcagcaaaataataaaatactgcaacc 84171246
Score = 357 bits (180), Expect = 9e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 654 agtgtcctatcagtggtgtgaatagagacatccccatccttcagtgccacggagtgctgg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84169828 agtgtcctatcagtggtgtgaatagagacatccccatccttcagtgccacggagtgctgg 84169887
Query: 714 atcctttagttcccctaatgtttggctctctaactgttgaaaggctaaaaacgctggtaa 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84169888 atcctttagttcccctaatgtttggctctctaactgttgaaaggctaaaaacgctggtaa 84169947
Query: 774 atccagccaatgtgactttcaaaacctacgaaggcatgatgcacagttcctgccaacagg 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84169948 atccagccaatgtgactttcaaaacctacgaaggcatgatgcacagttcctgccaacagg 84170007
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 551 cagggaggagccctgtccttgtacacagcgctcaccacccatcagaagctggccggcgtc 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84168441 cagggaggagccctgtccttgtacacagcgctcaccacccatcagaagctggccggcgtc 84168500
Query: 611 accgctctcagctgctggctcccactgcgatcttcgtttccagag 655
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84168501 accgctctcagctgctggctcccactgcgatcttcgtttccagag 84168545
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 479 gtaaaatctttgatagagcaggaggtgaagaatggcattccatctaacagaattattttg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84166586 gtaaaatctttgatagagcaggaggtgaagaatggcattccatctaacagaattattttg 84166645
Query: 539 ggaggattttctcagg 554
||||||||||||||||
Sbjct: 84166646 ggaggattttctcagg 84166661
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 408 ggtttaacattattgggctttcgccagattcactggaagatgaaactggaatcaaacagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84162911 ggtttaacattattgggctttcgccagattcactggaagatgaaactggaatcaaacagg 84162970
Query: 468 cagcagaaaatg 479
||||||||||||
Sbjct: 84162971 cagcagaaaatg 84162982
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 294 ggcacggatgggcagaagcctttgcaggtatcagaagtgctcatatcaaatatatctgcc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84159168 ggcacggatgggcagaagcctttgcaggtatcagaagtgctcatatcaaatatatctgcc 84159227
Query: 354 ctcatgc 360
|||||||
Sbjct: 84159228 ctcatgc 84159234
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 361 accagttatgcctgtaacattaaatatgaacatggccatgccttcttggt 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84160995 accagttatgcctgtaacattaaatatgaacatggccatgccttcttggt 84161044
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 262 ggtcattttccttcatggattgggagatacaggg 295
||||||||||||||||||||||||||||||||||
Sbjct: 84154848 ggtcattttccttcatggattgggagatacaggg 84154881
>Sscrofa_Chr02
|| Length = 162569375
Score = 509 bits (257), Expect = e-141
Identities = 466/534 (87%), Gaps = 10/534 (1%)
Strand = Plus / Plus
Query: 266 attttccttcatggattgggagatacagggcacggatgggcagaagcctttgcaggtatc 325
||||||||||||||||||||||||||||| ||| || ||||||||||| || |
Sbjct: 118320468 attttccttcatggattgggagatacaggacacagaggggcagaagcc----ca-----c 118320518
Query: 326 agaagtgctcatatcaaatatatctgccctcatgcaccagttatgcctgtaacattaaat 385
||||| |||||||||| ||| ||||||||||||| |||| |||| |||||| ||||||||
Sbjct: 118320519 agaagggctcatatcagatacatctgccctcatgtaccatttatacctgtagcattaaat 118320578
Query: 386 atgaacatggccatgccttcttggtttaacattattgggctttcgccagattcactggaa 445
||||||||||| |||||| |||||||| |||||||| ||||| ||||||||||| ||
Sbjct: 118320579 atgaacatggctatgcctccttggtttggcattattgatctttcaccagattcacttgat 118320638
Query: 446 g-atgaaactggaatcaaacaggcagcagaaaatgtaaaatctttgatagagcaggaggt 504
| ||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 118320639 ggatgaaactggaattaaacaggcagcagaacctgtaaaagctttgatagagcaagaggt 118320698
Query: 505 gaagaatggcattccatctaacagaattattttgggaggattttctcagggaggagccct 564
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 118320699 gaagaatggctttccttctaacagaattattttgggaggattttctcagggaggagcctt 118320758
Query: 565 gtccttgtacacagcgctcaccacccatcagaagctggccggcgtcaccgctctcagctg 624
|||||| |||| || ||||||||||| ||||||||| | ||| |||| |||||||| |
Sbjct: 118320759 ttccttgcacacggctctcaccacccagcagaagctgcctggcatcactgctctcagttt 118320818
Query: 625 ctggctcccactgcgatcttcgtttccagagtgtcctatcagtggtgtgaatagagacat 684
|||| ||||||||| | | || ||| || || |||| |||||||||||||||||||||||
Sbjct: 118320819 ctggttcccactgcaagcctcattttcacagggtcccatcagtggtgtgaatagagacat 118320878
Query: 685 ccccatccttcagtgccacggagtgctggatcctttagttcccctaatgtttggctctct 744
||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct: 118320879 tcccatccttcagtgccatggaatgttggatcctttagttcccctaatgtttggctctct 118320938
Query: 745 aactgttgaaaggctaaaaacgctggtaaatccagccaatgtgactttcaaaac 798
|||||||||||||||||| | |||| | ||||||||||||||| ||||||||
Sbjct: 118320939 tactgttgaaaggctaaaagcattggtcagtccagccaatgtgaccttcaaaac 118320992
>Sscrofa_Chr01
|| Length = 315321322
Score = 77.8 bits (39), Expect = 1e-11
Identities = 82/95 (86%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 454 tggaatcaaacaggcagcagaaaatgtaaaatctttgatagagcaggaggtgaagaatgg 513
|||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||||| |
Sbjct: 93046873 tggaattaaacaggcagcagaaattgtaaaagctttgatagagca-gaggtgaagaacag 93046931
Query: 514 cattccatctaacagaattattttgggaggatttt 548
|||| | |||| |||||||||||||||||||
Sbjct: 93046932 tgttcctttcaacattattattttgggaggatttt 93046966
Score = 73.8 bits (37), Expect = 2e-10
Identities = 101/121 (83%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 266 attttccttcatggattgggagatacagggcacggatgggca-gaagcctttgcaggtat 324
|||||||| ||||||| |||||||||| || ||||||||| |||||||||||||||||
Sbjct: 93046698 attttcctgcatggatctggagatacagagcttggatgggcaagaagcctttgcaggtat 93046757
Query: 325 cagaagtgctcatatcaaatatatctgccctcatgcaccagttatgcctgtaacattaaa 384
||||| | | |||||||||||||| || | |||| || |||||||||| |||||||
Sbjct: 93046758 cagaaattcatgtatcaaatatatctacctgcttgcatcaattatgcctgttgcattaaa 93046817
Query: 385 t 385
|
Sbjct: 93046818 t 93046818
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,698,560
Number of extensions: 231
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 13
Length of query: 1204
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1183
Effective length of database: 2,808,413,156
Effective search space: 3322352763548
Effective search space used: 3322352763548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)