Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013681
(950 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543806.2| PREDICTED: similar to G-protein coupled recepto... 419 e-117
Alignment gi|XP_543807.2| PREDICTED: similar to G protein-coupled recepto... 183 2e-46
Alignment gi|XP_540407.2| PREDICTED: similar to G protein-coupled recepto... 134 2e-31
Alignment gi|XP_536950.2| PREDICTED: similar to G-protein coupled recepto... 118 7e-27
>ref|XP_543806.2| PREDICTED: similar to G-protein coupled receptor family C group 5
member D [Canis familiaris].
Length = 445
Score = 419 bits (1076), Expect = e-117
Identities = 217/310 (70%), Positives = 233/310 (75%), Gaps = 4/310 (1%)
Frame = +2
Query: 2 LAVTTSKQLQPWLPACGHRGGETQDHSQEAHLHVTMYEDCVKSTGDYNLFCDTEGPWGIV 181
LAVTTS+ L P LP R ET+ HS+E HL VTMYEDC+KST DY CD EG W IV
Sbjct: 52 LAVTTSQAL-PQLPVWTQRR-ETEIHSREVHLQVTMYEDCIKSTEDYYFVCDNEGAWSIV 109
Query: 182 LESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXXXXXXXXXXXIIQFN 361
LESLA IGIVVT+ILLLA+LFL+RRV+DCS WN LPTQ I QFN
Sbjct: 110 LESLAIIGIVVTIILLLAYLFLLRRVQDCSLWNTLPTQFLFLLGVLGLFSLAFAFIAQFN 169
Query: 362 EQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILCIAIGVSLLQTIIAI 541
+QTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILCIAIGVSLLQ IIAI
Sbjct: 170 QQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILCIAIGVSLLQVIIAI 229
Query: 542 EYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAKATFCGPCENWKQHGRL 721
EYVTL+MTRGM F+HMTPCQ MALTFF++KATFCGPCENWKQHGRL
Sbjct: 230 EYVTLMMTRGMMFMHMTPCQLNVDFVVLLVYVLFLMALTFFISKATFCGPCENWKQHGRL 289
Query: 722 IFVTXXXXXXXXXXXXXXXMRGNP----QPQWDDPIICIALVTNAWVFLLLYIIPELCIL 889
IFVT +RGNP QPQWDDP+ICIALVTNAWVFLLLYIIPELCIL
Sbjct: 290 IFVTVLISIIIWVVWISMLLRGNPQLQRQPQWDDPVICIALVTNAWVFLLLYIIPELCIL 349
Query: 890 YRSSRQDHPL 919
YRSSRQ+ PL
Sbjct: 350 YRSSRQNCPL 359
>ref|XP_543807.2| PREDICTED: similar to G protein-coupled receptor, family C, group
5, member A [Canis familiaris].
Length = 357
Score = 183 bits (464), Expect = 2e-46
Identities = 104/264 (39%), Positives = 142/264 (53%), Gaps = 3/264 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y+ CDT WGIVLE++AA+G V ++ + A L L+ +V+D ++ VLPTQ
Sbjct: 17 YHRLCDTTKIWGIVLEAVAAVGAVTSMAFMFALLILICKVQDSNRRKVLPTQFLFLLGVL 76
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
IIQ + T P R+FLFGVLF+LCFSCLLAHA NL KLV GR S +L
Sbjct: 77 GIFGLTFAFIIQLDGSTGPTRFFLFGVLFSLCFSCLLAHAFNLTKLVHGRKPLSLMVMLS 136
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG--MRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAK 673
+A+G+SL+Q IIA EY+ L M R F ++ + MALTF ++
Sbjct: 137 LAVGLSLVQDIIAAEYIILTMNRTNVAIFSELSAPRRNEDFVMLLIYVLSLMALTFLMSC 196
Query: 674 ATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQPQWDDPIICIALVTNAWVF 853
FCG WK+HG IF+T + P+WDD ++ ALV N WVF
Sbjct: 197 FIFCGSFIGWKRHGTHIFLTMLLSIGIWVTWITLLLISTFGPEWDDTVLSSALVANGWVF 256
Query: 854 LLLYIIPELCILYRS-SRQDHPLQ 922
LL Y PE +L + + D+P++
Sbjct: 257 LLAYAAPEFQLLTKQRNPMDYPVE 280
>ref|XP_540407.2| PREDICTED: similar to G protein-coupled receptor family C, group 5,
member C isoform a [Canis familiaris].
Length = 571
Score = 134 bits (336), Expect = 2e-31
Identities = 87/282 (30%), Positives = 130/282 (46%), Gaps = 16/282 (5%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
YNL CD G WGI+LE++A G+V T +L + + + V+D + +VL TQ
Sbjct: 170 YNL-CDRSGAWGIILEAVAGAGVVTTFVLTIILVASLPFVQDTKKRSVLGTQVFFLLGTL 228
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
+++ N T R FLFGVLFA+CFSCL+AH L L R I
Sbjct: 229 GLFCLVFACVVKPNFSTCASRRFLFGVLFAICFSCLVAHVFALNFLARKNHGPRGWVIFT 288
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG-----------MRFVHMTPCQXXXXXXXXXXXXXXX 646
+A+ ++L++ II E++ + + RG +V +PC
Sbjct: 289 VALLLTLVEVIINTEWLIITLVRGGGEGDPLGNGSATWVTASPCAIANMDFVMALIYVML 348
Query: 647 MALTFFV-AKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ---PQWDDP 814
+ L F A CG + W++HG + +T GN Q P WDDP
Sbjct: 349 LLLCAFTGAWPVVCGRFKRWRKHGAFVLLTTATSIAIWVVWIVMYTYGNRQRNSPTWDDP 408
Query: 815 IICIALVTNAWVFLLLYIIPELCILYRSS-RQDHPLQLVPAR 937
+ IAL NAW F+L Y+IPE+ + ++S Q + + P R
Sbjct: 409 TLAIALAANAWAFVLFYVIPEVSQVTKASPEQSYQGDMYPTR 450
>ref|XP_536950.2| PREDICTED: similar to G-protein coupled receptor family C group 5
member B precursor (Retinoic acid induced gene 2
protein) (RAIG-2) (A-69G12.1) [Canis familiaris].
Length = 387
Score = 118 bits (296), Expect = 7e-27
Identities = 78/264 (29%), Positives = 126/264 (47%), Gaps = 5/264 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD + WGIV+E++A G ++T++L+L L + ++D + + +
Sbjct: 37 YVSLCDLDTIWGIVVEAVAGAGALITLLLMLILLVRLPFIKDKEKKDPVGLHFLFLLGTL 96
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
II+ +E VR FL+GVLFALCFSCLL+ A + +LVR S S ++
Sbjct: 97 GLFGLTFAFIIREDETICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGKSPSGWQLVG 156
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAKAT 679
+A+ + L+Q IIAIE++ L + R + + T +A T
Sbjct: 157 VALCLMLVQVIIAIEWLVLTVLRDAK---PACAYEPMDFVMALIYDMVLLVATLGLALFT 213
Query: 680 FCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ----PQWDDPIICIALVTNAW 847
CG + WKQ+G I VT + GN + W DP + I LV + W
Sbjct: 214 LCGKFKKWKQNGACILVTAFLSVLIWVAWMTMYLFGNAELRQGDAWGDPTLAITLVASGW 273
Query: 848 VFLLLYIIPEL-CILYRSSRQDHP 916
VF++ + IPE+ C + + +++ P
Sbjct: 274 VFVIFHAIPEIHCTILPAPQENTP 297
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,079,959
Number of extensions: 1264232
Number of successful extensions: 6153
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5997
Number of HSP's successfully gapped: 4
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013681
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013681
(950 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098882.1| G-protein coupled receptor family C group 5 ... 390 e-109
Alignment gi|NP_001029687.1| retinoic acid-induced protein 3 [Bos taurus]. 185 6e-47
Alignment gi|XP_002696239.1| PREDICTED: G protein-coupled receptor, famil... 135 5e-32
Alignment gi|XP_878236.3| PREDICTED: G protein-coupled receptor, family C... 135 5e-32
Alignment gi|NP_001069209.1| G-protein coupled receptor family C group 5 ... 119 4e-27
Alignment gi|NP_001095783.1| sarcoplasmic reticulum histidine-rich calciu... 51 2e-06
>ref|NP_001098882.1| G-protein coupled receptor family C group 5 member D [Bos taurus].
Length = 300
Score = 390 bits (1002), Expect = e-109
Identities = 198/275 (72%), Positives = 209/275 (76%), Gaps = 4/275 (1%)
Frame = +2
Query: 107 MYEDCVKSTGDYNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVL 286
MYEDC +STGDY CDTEG WGIVLESLAA+GIVVTV+LLLAFLFLMRRV+DC+ WNVL
Sbjct: 1 MYEDCKESTGDYYFLCDTEGAWGIVLESLAAVGIVVTVMLLLAFLFLMRRVQDCAHWNVL 60
Query: 287 PTQXXXXXXXXXXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRG 466
PTQ IIQ N+QTAP+RYFLFGVLFALCFSCLLAHASNLVKLVRG
Sbjct: 61 PTQFLFLLGVLGLFGLAFAFIIQLNQQTAPIRYFLFGVLFALCFSCLLAHASNLVKLVRG 120
Query: 467 RVSFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXX 646
R SFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRG FVHMTP Q
Sbjct: 121 RASFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRGGMFVHMTPYQLNVDFVVLLVYVLFL 180
Query: 647 MALTFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNP----QPQWDDP 814
MALTFFV+K TFCGPCENWKQHGRLIFVT MRGN QPQWDDP
Sbjct: 181 MALTFFVSKTTFCGPCENWKQHGRLIFVTVLVSIIIWVVWISMLMRGNTQLQRQPQWDDP 240
Query: 815 IICIALVTNAWVFLLLYIIPELCILYRSSRQDHPL 919
+ICIALVTNAWVFLLLYI+PELCILYRS +QD PL
Sbjct: 241 VICIALVTNAWVFLLLYIVPELCILYRSCQQDCPL 275
>ref|NP_001029687.1| retinoic acid-induced protein 3 [Bos taurus].
Length = 357
Score = 185 bits (469), Expect = 6e-47
Identities = 108/264 (40%), Positives = 139/264 (52%), Gaps = 3/264 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD + WGIVLE+LA +G V +V ++ L L+ +V+D ++ +LPTQ
Sbjct: 17 YYRLCDKKAAWGIVLEALAGVGAVASVAFMITLLVLICKVQDSNKRKLLPTQFLFLLGVL 76
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
II + T P R+FLFGVLFALCFSCLL HA NL KLVRGR S +L
Sbjct: 77 GIFGLTFAFIITLDGGTGPTRFFLFGVLFALCFSCLLVHAFNLTKLVRGRQPLSMLVMLG 136
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG--MRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAK 673
+A+G SL+Q IIAIEYV L M R F ++P + MALTF A
Sbjct: 137 LALGFSLVQDIIAIEYVVLTMNRTNVNIFSELSPPRRNEDFVMLLIYVLFLMALTFLTAS 196
Query: 674 ATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQPQWDDPIICIALVTNAWVF 853
+F G WK+HG I++T + PQWDD I+ ALV N WVF
Sbjct: 197 FSFQGSFTAWKRHGAHIYLTTILSIAIWVAWITLLLVPTLSPQWDDTILSSALVANGWVF 256
Query: 854 LLLYIIPELCILYRSSR-QDHPLQ 922
LL YI PE +L R D+P++
Sbjct: 257 LLAYIAPEFHLLTRQQNPMDYPVE 280
>ref|XP_002696239.1| PREDICTED: G protein-coupled receptor, family C, group 5, member C
[Bos taurus].
Length = 442
Score = 135 bits (340), Expect = 5e-32
Identities = 91/283 (32%), Positives = 133/283 (46%), Gaps = 17/283 (6%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
YNL CD WGI+LE++A G+V T +L + + + V+D + ++L TQ
Sbjct: 40 YNL-CDRSEAWGIILEAVAGAGVVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTL 98
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
+++ + T R FLFGVLFA+CFSCL+AH L LVR I
Sbjct: 99 GLFCLVFACVVKPSFSTCASRRFLFGVLFAICFSCLVAHVLALHFLVRKNHGPRGWVIFL 158
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG------------MRFVHMTPCQXXXXXXXXXXXXXX 643
+A+ +SL++ II E++ + + RG +V ++PC
Sbjct: 159 VALLLSLVEVIINTEWLIITLVRGAGTEGDALGNGSAGWVAVSPCAIANADFVMALIYVM 218
Query: 644 XMAL-TFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ---PQWDD 811
+ L F A + CG + W++HG I +T GN Q P WDD
Sbjct: 219 LLLLCAFSGAWSALCGRFKRWRKHGVFILLTTTASIAIWVVWIVMYTYGNRQHNSPTWDD 278
Query: 812 PIICIALVTNAWVFLLLYIIPELCILYRSS-RQDHPLQLVPAR 937
P + IAL TNAW F+L Y+IPE+ + RSS Q + L P R
Sbjct: 279 PTLAIALATNAWAFVLFYVIPEVSQVTRSSPEQSYQGDLYPTR 321
>ref|XP_878236.3| PREDICTED: G protein-coupled receptor, family C, group 5, member C
isoform 2 [Bos taurus].
Length = 442
Score = 135 bits (340), Expect = 5e-32
Identities = 91/283 (32%), Positives = 133/283 (46%), Gaps = 17/283 (6%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
YNL CD WGI+LE++A G+V T +L + + + V+D + ++L TQ
Sbjct: 40 YNL-CDRSEAWGIILEAVAGAGVVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTL 98
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
+++ + T R FLFGVLFA+CFSCL+AH L LVR I
Sbjct: 99 GLFCLVFACVVKPSFSTCASRRFLFGVLFAICFSCLVAHVLALHFLVRKNHGPRGWVIFL 158
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG------------MRFVHMTPCQXXXXXXXXXXXXXX 643
+A+ +SL++ II E++ + + RG +V ++PC
Sbjct: 159 VALLLSLVEVIINTEWLIITLVRGAGTEGDALGNGSAGWVAVSPCAIANADFVMALIYVM 218
Query: 644 XMAL-TFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ---PQWDD 811
+ L F A + CG + W++HG I +T GN Q P WDD
Sbjct: 219 LLLLCAFSGAWSALCGRFKRWRKHGVFILLTTTASIAIWVVWIVMYTYGNRQHNSPTWDD 278
Query: 812 PIICIALVTNAWVFLLLYIIPELCILYRSS-RQDHPLQLVPAR 937
P + IAL TNAW F+L Y+IPE+ + RSS Q + L P R
Sbjct: 279 PTLAIALATNAWAFVLFYVIPEVSQVTRSSPEQSYQGDLYPTR 321
>ref|NP_001069209.1| G-protein coupled receptor family C group 5 member B [Bos taurus].
Length = 387
Score = 119 bits (298), Expect = 4e-27
Identities = 80/265 (30%), Positives = 128/265 (48%), Gaps = 6/265 (2%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD + WGIV+E++A G ++T++L+L L + ++D + + +
Sbjct: 37 YVSLCDLDTIWGIVVEAVAGAGALITLLLMLILLVRLPFIKDKEKKDPVGLHFLFLLGTL 96
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
II+ +E VR FL+GVLFALCFSCLL+ A + +LVR S S ++
Sbjct: 97 GLFGLTFAFIIREDETICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGKSPSGWQLVG 156
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRGMR-FVHMTPCQXXXXXXXXXXXXXXXMALTFFVAKA 676
+A+ + L+Q IIAIE++ L + R + P +AL FF
Sbjct: 157 MALCLMLVQVIIAIEWLVLTVLRDAKPACAYEPMDFAMALIYDMVLLVATLALAFF---- 212
Query: 677 TFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ----PQWDDPIICIALVTNA 844
+ CG + WKQ+G I VT + GN + W DP + I LV +
Sbjct: 213 SLCGKFKKWKQNGVCILVTAFLSVLIWVAWMTMYLFGNAELRQGDAWGDPTLAITLVASG 272
Query: 845 WVFLLLYIIPEL-CILYRSSRQDHP 916
WVF++ + IPE+ C + + +++ P
Sbjct: 273 WVFVIFHAIPEIHCTILPAPQENTP 297
>ref|NP_001095783.1| sarcoplasmic reticulum histidine-rich calcium-binding protein [Bos
taurus].
Length = 871
Score = 50.8 bits (120), Expect = 2e-06
Identities = 69/284 (24%), Positives = 103/284 (36%), Gaps = 48/284 (16%)
Frame = -2
Query: 931 RHQLQRVILPTGPVENAQLRDDVQQQENPCVGHQG------DADDGVVPLGLRVASHQQG 770
RHQ+ R G E ++ +P HQG + +D VV R H+
Sbjct: 448 RHQVHRH-QDHGEEEEEDDSEEHHHHHSPSHRHQGHEEEDDEDEDDVVSTEHRHQVHRHR 506
Query: 769 D-----------PHHPDNDGN-EHRDEDEPSVLFPVLARATEGGFGDEEREGHQEE---- 638
D HH + GN E DED + + R T G GDEE E +EE
Sbjct: 507 DHGEEEDEDDSEEHHHHHGGNKEDEDEDLSTEHWHQAPRHTHHGLGDEEEEEEKEEITVK 566
Query: 637 ------DVHQQDHKVHVELTGCHVHKPHTSGHYESHVLNSND-------------CLQEA 515
Q HK E +K GH V D Q+
Sbjct: 567 FSHHVASPQPQGHKSAKEEDFPEDYKKAVPGHDHQGVPKEEDEDIPARLGHQAPSHRQQD 626
Query: 514 DADSNAQNCGPREGDSAPDQLHQVGGMSQ-EAREAESKEDPKEKVADRGCLLIELDDEGK 338
D + G + + +P +G + RE++S+ED +EK D E +EG
Sbjct: 627 HRDEGTGHRGSIKEEMSPQSPEHIGVKDRSHLRESDSEEDEEEKEEDHSS--HEEANEGS 684
Query: 337 SQAKEPQH------TQEEEELGGENVPLAAVPDPSHEEEKCQEQ 224
+ ++ +H EE+E G + L+ + +EEK E+
Sbjct: 685 EEGEDTRHGSLDDQEDEEDEEEGHGLSLSQEEEEEEKEEKRGER 728
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,470,280
Number of extensions: 1224040
Number of successful extensions: 5860
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5771
Number of HSP's successfully gapped: 6
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013681
(950 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361589.1| PREDICTED: LOW QUALITY PROTEIN: G-protein co... 424 e-119
Alignment gi|XP_003362205.1| PREDICTED: retinoic acid-induced protein 3-l... 185 4e-47
Alignment gi|XP_003354630.1| PREDICTED: G-protein coupled receptor family... 115 4e-26
Alignment gi|XP_003361359.1| PREDICTED: G-protein coupled receptor family... 107 1e-23
>ref|XP_003361589.1| PREDICTED: LOW QUALITY PROTEIN: G-protein coupled receptor family C
group 5 member D-like [Sus scrofa].
Length = 342
Score = 424 bits (1091), Expect = e-119
Identities = 218/274 (79%), Positives = 218/274 (79%), Gaps = 2/274 (0%)
Frame = +2
Query: 107 MYEDCVKSTGDYNLFCDT--EGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWN 280
MYEDCVKSTGDYNLFCDT EGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWN
Sbjct: 1 MYEDCVKSTGDYNLFCDTGXEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWN 60
Query: 281 VLPTQXXXXXXXXXXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLV 460
VLPTQ IIQFNEQTAP GVLFALCFSCLLAHASNLVKLV
Sbjct: 61 VLPTQFLFLLGVLGLFGLAFAFIIQFNEQTAPXXXXXXGVLFALCFSCLLAHASNLVKLV 120
Query: 461 RGRVSFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXX 640
RGRVSFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQ
Sbjct: 121 RGRVSFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQLHVDFVVLLVYVL 180
Query: 641 XXMALTFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQPQWDDPII 820
MALTFFVAKATFCGPCENWKQHGRLIFVT MRGNPQPQWDDPII
Sbjct: 181 FLMALTFFVAKATFCGPCENWKQHGRLIFVTVLISIIIWVVWISLLMRGNPQPQWDDPII 240
Query: 821 CIALVTNAWVFLLLYIIPELCILYRSSRQDHPLQ 922
CIALVTNAWVFLLLYIIPELCILYRSSRQD PLQ
Sbjct: 241 CIALVTNAWVFLLLYIIPELCILYRSSRQDRPLQ 274
>ref|XP_003362205.1| PREDICTED: retinoic acid-induced protein 3-like [Sus scrofa].
Length = 357
Score = 185 bits (469), Expect = 4e-47
Identities = 103/264 (39%), Positives = 138/264 (52%), Gaps = 3/264 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD + WGI+LE+LAA+G V +V ++A L L+ +V+D ++ VLP Q
Sbjct: 17 YYRLCDQKAVWGIILEALAALGAVSSVTFMVALLVLICKVQDSNRRKVLPIQFLFLLGVL 76
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
IIQ + T P R+FLFG+LFALCFSCLL HA NL +LV GR S +L
Sbjct: 77 GVFGLTFAFIIQLDGSTGPTRFFLFGILFALCFSCLLVHAFNLTRLVHGRRGLSLLVMLG 136
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG--MRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAK 673
+A+ SL+Q +IA+EY+ L M R F + P + M LTF A
Sbjct: 137 LAVAFSLVQDVIAVEYIVLTMNRTNVNIFSELPPPRRNEDFVMLLIYVLFLMVLTFLTAS 196
Query: 674 ATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQPQWDDPIICIALVTNAWVF 853
F GP WK+HG I+ T P PQWDD I+ ALV N WVF
Sbjct: 197 FVFRGPFTGWKRHGAHIYFTTLLTLTVWVVWIALLFVPTPGPQWDDTILSTALVANGWVF 256
Query: 854 LLLYIIPELCILYRS-SRQDHPLQ 922
LL Y++PE +L + + D+PL+
Sbjct: 257 LLAYVVPEFQLLTKQRNTMDYPLE 280
>ref|XP_003354630.1| PREDICTED: G-protein coupled receptor family C group 5 member
B-like [Sus scrofa].
Length = 551
Score = 115 bits (288), Expect = 4e-26
Identities = 77/265 (29%), Positives = 128/265 (48%), Gaps = 6/265 (2%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD + WGIV+E++A G ++T++L+L + + ++D + + +
Sbjct: 149 YVSLCDLDTIWGIVVEAVAGAGALITLLLMLMLMGRIAFIKDKEKKDPVGLHFLILLGTV 208
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVR-GRVSFSWTTIL 496
II+ +E VR FL+GVLFALCFSCLL+ A + +LVR G+ SW ++
Sbjct: 209 GLFGLTFAFIIREDETICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGKSPSSW-QLV 267
Query: 497 CIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAKA 676
+A+ + L+Q IIAIE++ L + R + + T +A
Sbjct: 268 GMALCLMLVQVIIAIEWLVLTVLRDAK---PACAYEPMDFAMALIYDMVLLVATLGLALF 324
Query: 677 TFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ----PQWDDPIICIALVTNA 844
T CG + WKQ+G + VT + GN + W DP + I LV +
Sbjct: 325 TLCGKFKKWKQNGACLLVTAFLSLLIWVAWMTMYLFGNAELRQGDAWGDPTLAITLVASG 384
Query: 845 WVFLLLYIIPEL-CILYRSSRQDHP 916
WVF++ + IPE+ C + + +++ P
Sbjct: 385 WVFVIFHAIPEIHCTILPAPQENTP 409
>ref|XP_003361359.1| PREDICTED: G-protein coupled receptor family C group 5 member C-like,
partial [Sus scrofa].
Length = 613
Score = 107 bits (267), Expect = 1e-23
Identities = 77/275 (28%), Positives = 116/275 (42%), Gaps = 14/275 (5%)
Frame = +2
Query: 155 DTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXXXXXXX 334
D WGIVLE++A G + + V+D + ++L TQ
Sbjct: 231 DRSEAWGIVLEAVAGAGXXXXXXXXXILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCL 290
Query: 335 XXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILCIAIGV 514
+++ + T R FLFGVLFA+CFSCL+AH L LVR +A+ +
Sbjct: 291 VFACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFTVALLL 350
Query: 515 SLLQTIIAIEYVTLIMTRG------------MRFVHMTPCQXXXXXXXXXXXXXXXMALT 658
SL++ II E++ + + RG +PC + L
Sbjct: 351 SLVEVIINTEWLIITLVRGGGGEAGPPGNXXXXXXXXSPCAIANMDFVMALIYVMLLLLC 410
Query: 659 FFV-AKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQPQWDDPIICIALV 835
F A CG + W++HG + +T + P WDDP + IAL
Sbjct: 411 AFTGAWPALCGRFKRWRKHGVFVLLTTATSI-------------HHSPSWDDPTLAIALA 457
Query: 836 TNAWVFLLLYIIPELCILYRSS-RQDHPLQLVPAR 937
NAWVF+L Y+IPE+ + ++S Q + L P R
Sbjct: 458 ANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTR 492
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,409,072
Number of extensions: 785618
Number of successful extensions: 3847
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3786
Number of HSP's successfully gapped: 4
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013681
(950 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444348.1| G-protein coupled receptor family C group 5 mem... 379 e-105
Alignment gi|NP_001192325.1| G-protein coupled receptor family C group 5 ... 379 e-105
Alignment gi|NP_852109.2| retinoic acid-induced protein 3 [Mus musculus]. 184 7e-47
Alignment gi|NP_001103808.1| G-protein coupled receptor family C group 5 ... 134 1e-31
Alignment gi|NP_671750.2| G-protein coupled receptor family C group 5 mem... 134 1e-31
Alignment gi|NP_001103807.1| G-protein coupled receptor family C group 5 ... 134 1e-31
Alignment gi|NP_001182703.1| G-protein coupled receptor family C group 5 ... 114 1e-25
Alignment gi|NP_071865.1| G-protein coupled receptor family C group 5 mem... 114 1e-25
Alignment gi|NP_034603.2| histidine rich calcium binding protein [Mus mus... 49 4e-06
>ref|NP_444348.1| G-protein coupled receptor family C group 5 member D isoform 2 [Mus
musculus].
Length = 300
Score = 379 bits (974), Expect = e-105
Identities = 194/276 (70%), Positives = 205/276 (74%), Gaps = 4/276 (1%)
Frame = +2
Query: 107 MYEDCVKSTGDYNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVL 286
MYEDCVKST DY LFCD EGPW IVLESLA IGIVVT++LLLAFLFLMR+V+DCSQWNVL
Sbjct: 1 MYEDCVKSTEDYYLFCDNEGPWAIVLESLAVIGIVVTILLLLAFLFLMRKVQDCSQWNVL 60
Query: 287 PTQXXXXXXXXXXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRG 466
PTQ IIQ N QTAPVRYFLFGVLFA+CFSCLLAHASNLVKLVRG
Sbjct: 61 PTQFLFLLAVLGLFGLTFAFIIQLNHQTAPVRYFLFGVLFAICFSCLLAHASNLVKLVRG 120
Query: 467 RVSFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXX 646
RVSF WTTIL IAIGVSLLQTIIAIEYVTLIMTRG+ F HMTP Q
Sbjct: 121 RVSFCWTTILFIAIGVSLLQTIIAIEYVTLIMTRGLMFEHMTPYQLNVDFVCLLIYVLFL 180
Query: 647 MALTFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNP----QPQWDDP 814
MALTFFV+KATFCGPCENWKQHGRLIF T +RGNP QP WDD
Sbjct: 181 MALTFFVSKATFCGPCENWKQHGRLIFATVLVSIIIWVVWISMLLRGNPQLQRQPHWDDA 240
Query: 815 IICIALVTNAWVFLLLYIIPELCILYRSSRQDHPLQ 922
+ICI LVTNAWVFLL+YIIPEL ILYRS RQ+ P Q
Sbjct: 241 VICIGLVTNAWVFLLIYIIPELSILYRSCRQECPTQ 276
>ref|NP_001192325.1| G-protein coupled receptor family C group 5 member D isoform 1 [Mus
musculus].
Length = 344
Score = 379 bits (974), Expect = e-105
Identities = 194/276 (70%), Positives = 205/276 (74%), Gaps = 4/276 (1%)
Frame = +2
Query: 107 MYEDCVKSTGDYNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVL 286
MYEDCVKST DY LFCD EGPW IVLESLA IGIVVT++LLLAFLFLMR+V+DCSQWNVL
Sbjct: 1 MYEDCVKSTEDYYLFCDNEGPWAIVLESLAVIGIVVTILLLLAFLFLMRKVQDCSQWNVL 60
Query: 287 PTQXXXXXXXXXXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRG 466
PTQ IIQ N QTAPVRYFLFGVLFA+CFSCLLAHASNLVKLVRG
Sbjct: 61 PTQFLFLLAVLGLFGLTFAFIIQLNHQTAPVRYFLFGVLFAICFSCLLAHASNLVKLVRG 120
Query: 467 RVSFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXX 646
RVSF WTTIL IAIGVSLLQTIIAIEYVTLIMTRG+ F HMTP Q
Sbjct: 121 RVSFCWTTILFIAIGVSLLQTIIAIEYVTLIMTRGLMFEHMTPYQLNVDFVCLLIYVLFL 180
Query: 647 MALTFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNP----QPQWDDP 814
MALTFFV+KATFCGPCENWKQHGRLIF T +RGNP QP WDD
Sbjct: 181 MALTFFVSKATFCGPCENWKQHGRLIFATVLVSIIIWVVWISMLLRGNPQLQRQPHWDDA 240
Query: 815 IICIALVTNAWVFLLLYIIPELCILYRSSRQDHPLQ 922
+ICI LVTNAWVFLL+YIIPEL ILYRS RQ+ P Q
Sbjct: 241 VICIGLVTNAWVFLLIYIIPELSILYRSCRQECPTQ 276
>ref|NP_852109.2| retinoic acid-induced protein 3 [Mus musculus].
Length = 356
Score = 184 bits (468), Expect = 7e-47
Identities = 106/264 (40%), Positives = 139/264 (52%), Gaps = 3/264 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y+ CD WGI LE+LAA+G V TV + A +FL+ +V+D ++ +LP Q
Sbjct: 19 YHRLCDLAEGWGIALETLAAVGAVATVACMFALVFLICKVQDSNKRKMLPAQFLFLLGVL 78
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
II+ + T P R+FLFGVLFA+CFSCLLAHA NL+KLVRGR SW IL
Sbjct: 79 GVFGLTFAFIIKLDGATGPTRFFLFGVLFAICFSCLLAHAFNLIKLVRGRKPLSWLVILS 138
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG--MRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAK 673
+A+G SL+Q +IAIEY+ L M R F + + M LTFF +
Sbjct: 139 LAVGFSLVQDVIAIEYLVLTMNRTNVNVFSELPAPRRNEDFVMLLIYVLVLMVLTFFASF 198
Query: 674 ATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQPQWDDPIICIALVTNAWVF 853
FCG WK+HG I T + + +WDD I+ ALV N WVF
Sbjct: 199 LVFCGSFSGWKRHGFHICFTSFLSIAIWVAWIVLLLIPDIDRKWDDTILSTALVANGWVF 258
Query: 854 LLLYIIPELCILYRS-SRQDHPLQ 922
L YI+PE L R S D+P++
Sbjct: 259 LAFYILPEFRQLPRQRSPTDYPVE 282
>ref|NP_001103808.1| G-protein coupled receptor family C group 5 member C isoform b [Mus
musculus].
Length = 440
Score = 134 bits (336), Expect = 1e-31
Identities = 88/282 (31%), Positives = 131/282 (46%), Gaps = 16/282 (5%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
YNL CD G WGIVLE++A GI+ T +L + + + V+D + ++L TQ
Sbjct: 39 YNL-CDRSGAWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTL 97
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
+++ + T R FLFGVLFA+CFSCL+AH +L L R I
Sbjct: 98 GLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVLSLNFLTRKNHGPRGWVIFT 157
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRGMRFVH-----------MTPCQXXXXXXXXXXXXXXX 646
+A+ ++L++ II E++ + + RG V +PC
Sbjct: 158 VALLLTLVEVIINTEWLIITLVRGGGQVSPLGNVSADSTMTSPCAIANMDFVMALIYVML 217
Query: 647 MALTFFV-AKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ---PQWDDP 814
+ LT F+ A T CG + W++HG + +T GN Q P WDDP
Sbjct: 218 LLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDP 277
Query: 815 IICIALVTNAWVFLLLYIIPELC-ILYRSSRQDHPLQLVPAR 937
+ IAL NAW F+L Y+IPE+ + S Q + + P R
Sbjct: 278 TLAIALAANAWTFVLFYVIPEVSQVTKPSPEQSYQGDMYPTR 319
>ref|NP_671750.2| G-protein coupled receptor family C group 5 member C isoform b [Mus
musculus].
Length = 440
Score = 134 bits (336), Expect = 1e-31
Identities = 88/282 (31%), Positives = 131/282 (46%), Gaps = 16/282 (5%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
YNL CD G WGIVLE++A GI+ T +L + + + V+D + ++L TQ
Sbjct: 39 YNL-CDRSGAWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTL 97
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
+++ + T R FLFGVLFA+CFSCL+AH +L L R I
Sbjct: 98 GLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVLSLNFLTRKNHGPRGWVIFT 157
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRGMRFVH-----------MTPCQXXXXXXXXXXXXXXX 646
+A+ ++L++ II E++ + + RG V +PC
Sbjct: 158 VALLLTLVEVIINTEWLIITLVRGGGQVSPLGNVSADSTMTSPCAIANMDFVMALIYVML 217
Query: 647 MALTFFV-AKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ---PQWDDP 814
+ LT F+ A T CG + W++HG + +T GN Q P WDDP
Sbjct: 218 LLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDP 277
Query: 815 IICIALVTNAWVFLLLYIIPELC-ILYRSSRQDHPLQLVPAR 937
+ IAL NAW F+L Y+IPE+ + S Q + + P R
Sbjct: 278 TLAIALAANAWTFVLFYVIPEVSQVTKPSPEQSYQGDMYPTR 319
>ref|NP_001103807.1| G-protein coupled receptor family C group 5 member C isoform a [Mus
musculus].
Length = 441
Score = 134 bits (336), Expect = 1e-31
Identities = 88/282 (31%), Positives = 131/282 (46%), Gaps = 16/282 (5%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
YNL CD G WGIVLE++A GI+ T +L + + + V+D + ++L TQ
Sbjct: 39 YNL-CDRSGAWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTL 97
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
+++ + T R FLFGVLFA+CFSCL+AH +L L R I
Sbjct: 98 GLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVLSLNFLTRKNHGPRGWVIFT 157
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRGMRFVH-----------MTPCQXXXXXXXXXXXXXXX 646
+A+ ++L++ II E++ + + RG V +PC
Sbjct: 158 VALLLTLVEVIINTEWLIITLVRGGGQVSPLGNVSADSTMTSPCAIANMDFVMALIYVML 217
Query: 647 MALTFFV-AKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ---PQWDDP 814
+ LT F+ A T CG + W++HG + +T GN Q P WDDP
Sbjct: 218 LLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDP 277
Query: 815 IICIALVTNAWVFLLLYIIPELC-ILYRSSRQDHPLQLVPAR 937
+ IAL NAW F+L Y+IPE+ + S Q + + P R
Sbjct: 278 TLAIALAANAWTFVLFYVIPEVSQVTKPSPEQSYQGDMYPTR 319
>ref|NP_001182703.1| G-protein coupled receptor family C group 5 member B isoform 1
precursor [Mus musculus].
Length = 411
Score = 114 bits (284), Expect = 1e-25
Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 4/263 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD + WGIV+E++A G ++T++L+L L + ++D + +
Sbjct: 45 YVSLCDLDAIWGIVVEAVAGAGALITLLLMLILLVRLPFIKDKERKRPVCLHFLFLLGTL 104
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
IIQ +E +R FL+GVLFALCFSCLL+ A + +LVR S + ++
Sbjct: 105 GLFGLTFAFIIQMDETICSIRRFLWGVLFALCFSCLLSQAWRVRRLVRQGTSPASWQLVS 164
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAKAT 679
+A+ + L+Q IIA E++ L + R + +A+T + T
Sbjct: 165 LALCLMLVQVIIATEWLVLTVLRDTK---PACAYEPMDFVMALIYDMVLLAITLAQSLFT 221
Query: 680 FCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGN----PQPQWDDPIICIALVTNAW 847
CG + WK +G I VT + GN W DP + I L + W
Sbjct: 222 LCGKFKRWKVNGAFILVTTFLSALIWVVWMTMYLFGNSLIKQGDAWSDPTLAITLAASGW 281
Query: 848 VFLLLYIIPELCILYRSSRQDHP 916
VF++ + IPE+ Q++P
Sbjct: 282 VFVIFHAIPEIHYTLLPPLQENP 304
>ref|NP_071865.1| G-protein coupled receptor family C group 5 member B isoform 2
precursor [Mus musculus].
Length = 410
Score = 114 bits (284), Expect = 1e-25
Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 4/263 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD + WGIV+E++A G ++T++L+L L + ++D + +
Sbjct: 45 YVSLCDLDAIWGIVVEAVAGAGALITLLLMLILLVRLPFIKDKERKRPVCLHFLFLLGTL 104
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
IIQ +E +R FL+GVLFALCFSCLL+ A + +LVR S + ++
Sbjct: 105 GLFGLTFAFIIQMDETICSIRRFLWGVLFALCFSCLLSQAWRVRRLVRQGTSPASWQLVS 164
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAKAT 679
+A+ + L+Q IIA E++ L + R + +A+T + T
Sbjct: 165 LALCLMLVQVIIATEWLVLTVLRDTK---PACAYEPMDFVMALIYDMVLLAITLAQSLFT 221
Query: 680 FCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGN----PQPQWDDPIICIALVTNAW 847
CG + WK +G I VT + GN W DP + I L + W
Sbjct: 222 LCGKFKRWKVNGAFILVTTFLSALIWVVWMTMYLFGNSLIKQGDAWSDPTLAITLAASGW 281
Query: 848 VFLLLYIIPELCILYRSSRQDHP 916
VF++ + IPE+ Q++P
Sbjct: 282 VFVIFHAIPEIHYTLLPPLQENP 304
>ref|NP_034603.2| histidine rich calcium binding protein [Mus musculus].
Length = 738
Score = 49.3 bits (116), Expect = 4e-06
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 7/193 (3%)
Frame = -2
Query: 781 HQQGDPHHPDND-GNEHRDEDEPSVLFPVLARATEGGFGDEEREGHQEEDVHQQDHKVHV 605
H P H +D G E +E V + +G D E + +E H H
Sbjct: 405 HWHQSPRHAHHDLGRESEEEVAVKYSHHVASHRPQGHNADREEDSLEEHMNEVPGHHHHR 464
Query: 604 ELTGCHVHKPHTSGHYESHVLNSNDCLQEADADSNAQNCGPREGDSAPDQLHQVGGMSQE 425
G GH + LQ+ D + + P +G+ A L G S+E
Sbjct: 465 ASRGDDEDISTEFGHKAP-----SHRLQDQDERARQGHREPVQGEIAHQPLQPTGPSSRE 519
Query: 424 AREA------ESKEDPKEKVADRGCLLIELDDEGKSQAKEPQHTQEEEELGGENVPLAAV 263
+R+ E EDP+++ A +E K + +E + +EEE+ GG ++P++
Sbjct: 520 SRKEGDHSSQEGDEDPEQRQAH--------SEEEKEEEEEEEEEEEEEKEGGHSLPMSQE 571
Query: 262 PDPSHEEEKCQEQ 224
D EEEK +++
Sbjct: 572 DD--EEEEKDEKE 582
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,165,242
Number of extensions: 1026217
Number of successful extensions: 4917
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4702
Number of HSP's successfully gapped: 9
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013681
(950 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061124.1| G-protein coupled receptor family C group 5 mem... 392 e-109
Alignment gi|NP_003970.1| retinoic acid-induced protein 3 [Homo sapiens]. 175 6e-44
Alignment gi|NP_061123.3| G-protein coupled receptor family C group 5 mem... 129 3e-30
Alignment gi|NP_071319.2| G-protein coupled receptor family C group 5 mem... 129 3e-30
Alignment gi|NP_057319.1| G-protein coupled receptor family C group 5 mem... 115 6e-26
>ref|NP_061124.1| G-protein coupled receptor family C group 5 member D [Homo
sapiens].
Length = 345
Score = 392 bits (1008), Expect = e-109
Identities = 193/276 (69%), Positives = 213/276 (77%), Gaps = 4/276 (1%)
Frame = +2
Query: 107 MYEDCVKSTGDYNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVL 286
MY+DC++STGDY L CD EGPWGI+LESLA +GIVVT++LLLAFLFLMR+++DCSQWNVL
Sbjct: 1 MYKDCIESTGDYFLLCDAEGPWGIILESLAILGIVVTILLLLAFLFLMRKIQDCSQWNVL 60
Query: 287 PTQXXXXXXXXXXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRG 466
PTQ II+ N+QTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRG
Sbjct: 61 PTQLLFLLSVLGLFGLAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRG 120
Query: 467 RVSFSWTTILCIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXX 646
VSFSWTTILCIAIG SLLQ IIA EYVTLIMTRGM FV+MTPCQ
Sbjct: 121 CVSFSWTTILCIAIGCSLLQIIIATEYVTLIMTRGMMFVNMTPCQLNVDFVVLLVYVLFL 180
Query: 647 MALTFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNP----QPQWDDP 814
MALTFFV+KATFCGPCENWKQHGRLIF+T +RGNP QPQWDDP
Sbjct: 181 MALTFFVSKATFCGPCENWKQHGRLIFITVLFSIIIWVVWISMLLRGNPQFQRQPQWDDP 240
Query: 815 IICIALVTNAWVFLLLYIIPELCILYRSSRQDHPLQ 922
++CIALVTNAWVFLLLYI+PELCILYRS RQ+ PLQ
Sbjct: 241 VVCIALVTNAWVFLLLYIVPELCILYRSCRQECPLQ 276
>ref|NP_003970.1| retinoic acid-induced protein 3 [Homo sapiens].
Length = 357
Score = 175 bits (443), Expect = 6e-44
Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 3/264 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD WGIVLE++A G+V +V +L L+ +V+D ++ +LPTQ
Sbjct: 17 YYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSNRRKMLPTQFLFLLGVL 76
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
II + T P R+FLFG+LF++CFSCLLAHA +L KLVRGR S IL
Sbjct: 77 GIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLTKLVRGRKPLSLLVILG 136
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG--MRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAK 673
+A+G SL+Q +IAIEY+ L M R F ++ + MALTF ++
Sbjct: 137 LAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLLLTYVLFLMALTFLMSS 196
Query: 674 ATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQPQWDDPIICIALVTNAWVF 853
TFCG WK+HG I++T M + +WDD I+ AL N WVF
Sbjct: 197 FTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRRWDDTILSSALAANGWVF 256
Query: 854 LLLYIIPELCILYRS-SRQDHPLQ 922
LL Y+ PE +L + + D+P++
Sbjct: 257 LLAYVSPEFWLLTKQRNPMDYPVE 280
>ref|NP_061123.3| G-protein coupled receptor family C group 5 member C isoform b
[Homo sapiens].
Length = 453
Score = 129 bits (325), Expect = 3e-30
Identities = 87/282 (30%), Positives = 128/282 (45%), Gaps = 16/282 (5%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
YNL CD G WGIVLE++A GIV T +L + + + V+D + ++L TQ
Sbjct: 52 YNL-CDRSGAWGIVLEAVAGAGIVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTL 110
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
+++ + T R FLFGVLFA+CFSCL AH L L R I
Sbjct: 111 GLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFT 170
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG-----------MRFVHMTPCQXXXXXXXXXXXXXXX 646
+A+ ++L++ II E++ + + RG + +PC
Sbjct: 171 VALLLTLVEVIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVML 230
Query: 647 MAL-TFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ---PQWDDP 814
+ L F A CG + W++HG + +T GN Q P WDDP
Sbjct: 231 LLLGAFLGAWPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDP 290
Query: 815 IICIALVTNAWVFLLLYIIPELCILYRSS-RQDHPLQLVPAR 937
+ IAL NAW F+L Y+IPE+ + +SS Q + + P R
Sbjct: 291 TLAIALAANAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTR 332
>ref|NP_071319.2| G-protein coupled receptor family C group 5 member C isoform a
[Homo sapiens].
Length = 486
Score = 129 bits (325), Expect = 3e-30
Identities = 87/282 (30%), Positives = 128/282 (45%), Gaps = 16/282 (5%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
YNL CD G WGIVLE++A GIV T +L + + + V+D + ++L TQ
Sbjct: 85 YNL-CDRSGAWGIVLEAVAGAGIVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTL 143
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
+++ + T R FLFGVLFA+CFSCL AH L L R I
Sbjct: 144 GLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFT 203
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRG-----------MRFVHMTPCQXXXXXXXXXXXXXXX 646
+A+ ++L++ II E++ + + RG + +PC
Sbjct: 204 VALLLTLVEVIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVML 263
Query: 647 MAL-TFFVAKATFCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQ---PQWDDP 814
+ L F A CG + W++HG + +T GN Q P WDDP
Sbjct: 264 LLLGAFLGAWPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDP 323
Query: 815 IICIALVTNAWVFLLLYIIPELCILYRSS-RQDHPLQLVPAR 937
+ IAL NAW F+L Y+IPE+ + +SS Q + + P R
Sbjct: 324 TLAIALAANAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTR 365
>ref|NP_057319.1| G-protein coupled receptor family C group 5 member B precursor
[Homo sapiens].
Length = 403
Score = 115 bits (288), Expect = 6e-26
Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 5/264 (1%)
Frame = +2
Query: 140 YNLFCDTEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQXXXXXXXX 319
Y CD + WGIV+E++A G ++T++L+L L + +++ + + +
Sbjct: 45 YVSLCDLDAIWGIVVEAVAGAGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTL 104
Query: 320 XXXXXXXXXIIQFNEQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 499
IIQ +E VR FL+GVLFALCFSCLL+ A + +LVR + ++
Sbjct: 105 GLFGLTFAFIIQEDETICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLVG 164
Query: 500 IAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQXXXXXXXXXXXXXXXMALTFFVAKAT 679
+A+ + L+Q IIA+E++ L + R R + +T +A T
Sbjct: 165 LALCLMLVQVIIAVEWLVLTVLRDTR---PACAYEPMDFVMALIYDMVLLVVTLGLALFT 221
Query: 680 FCGPCENWKQHGRLIFVTXXXXXXXXXXXXXXXMRGNPQPQ----WDDPIICIALVTNAW 847
CG + WK +G + +T + GN + Q W+DP + I L + W
Sbjct: 222 LCGKFKRWKLNGAFLLITAFLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGW 281
Query: 848 VFLLLYIIPEL-CILYRSSRQDHP 916
VF++ + IPE+ C L + +++ P
Sbjct: 282 VFVIFHAIPEIHCTLLPALQENTP 305
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,374,777
Number of extensions: 1234467
Number of successful extensions: 5692
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5599
Number of HSP's successfully gapped: 5
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013681
(950 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1711 0.0
gb|GL894707.2| Sus scrofa unplaced genomic scaffold ChrUScaf2591 1065 0.0
gb|GL896435.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 70 2e-09
>Sscrofa_Chr05
|| Length = 111506441
Score = 1711 bits (863), Expect = 0.0
Identities = 885/891 (99%), Gaps = 1/891 (0%)
Strand = Plus / Plus
Query: 61 aggggaaacacaagaccattctcaggaggcccacttacacgtcaccatgtacgaggactg 120
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 62863669 aggggaaatacaagaccattctcaggaggtccacttacacgtcaccatgtacgaggactg 62863728
Query: 121 cgtgaagtccactggggactataacctcttctgtgacactgagggaccatggggcattgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62863729 cgtgaagtccactggggactataacctcttctgtgacactgagggaccatggggcattgt 62863788
Query: 181 tctggagtccctggcagccatcggcatagtggttacagtgatactgctcttggcatttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62863789 tctggagtccctggcagccatcggcatagtggttacagtgatactgctcttggcatttct 62863848
Query: 241 cttcctcatgcgaagggtccgggactgcagccagtggaacgttctccccacccagttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62863849 cttcctcatgcgaagggtccgggactgcagccagtggaacgttctccccacccagttcct 62863908
Query: 301 cttcctcttgggtgtgctggggctctttggcctggcttttgccttcatcatccagttcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62863909 cttcctcttgggtgtgctggggctctttggcctggcttttgccttcatcatccagttcaa 62863968
Query: 361 tgagcaaacagcccctgtccgctactttctctttggggtcctctttgctctctgcttctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62863969 tgagcaaacagcccctgtccgctactttctctttggggtcctctttgctctctgcttctc 62864028
Query: 421 gtgcctcttggctcatgcctccaacctggtgaagctggtccggggcagagtctccttctc 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62864029 gtgcctcttggctcacgcctccaacctggtgaagctggtccggggcagagtctccttctc 62864088
Query: 481 ttggaccacaattctgtgcattgctatcggcgtcagcctcttgcagacaatcattgctat 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 62864089 ttggaccacaattctgtgcattgctattggcgtcagcctcttgcagacaatcattgctat 62864148
Query: 541 tgagtacgtgactctcataatgaccagaggtatgaggtttgtgcacatgacaccctgtca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62864149 tgagtacgtgactctcataatgaccagaggtatgaggtttgtgcacatgacaccctgtca 62864208
Query: 601 gctccacgtggactttgtggtcctgctggtgtacgtcctcttcctgatggccctcacgtt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62864209 gctccacgtggactttgtggtcctgctggtgtacgtcctcttcctgatggccctcacgtt 62864268
Query: 661 cttcgtcgccaaagccaccttctgtggcccgtgcgagaactggaaacagcacggacggct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62864269 cttcgtcgccaaagccaccttctgtggcccgtgcgagaactggaaacagcacggacggct 62864328
Query: 721 catcttcgtcacggtgctcatttccatcattatctgggtggtgtggatctccctgctgat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62864329 catcttcgtcacggtgctcatttccatcattatctgggtggtgtggatctccctgctgat 62864388
Query: 781 gagaggcaacccgcagccccagtgggacgaccccatcatctgcatcgccctggtgaccaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62864389 gagaggcaacccgcagccccagtgggacgaccccatcatctgcatcgccctggtgaccaa 62864448
Query: 841 cgcatgggttttcctgctgctgtacatcatcccggagctgtgcattctctacaggtccag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62864449 cgcatgggttttcctgctgctgtacatcatcccggagctgtgcattctctacaggtccag 62864508
Query: 901 taggcaggatcaccctctgc-agctggtgcctgcccggtccccgcttacca 950
||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 62864509 taggcaggatcgccctctgcaagctggtgcctgcccggtccccgcttacca 62864559
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 attggcagttaccacctcgaagcaactacaaccttggcttccagcgtgtggacacagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62862732 attggcagttaccacctcgaagcaactacaaccttggcttccagcgtgtggacacagagg 62862791
Query: 61 agg 63
|||
Sbjct: 62862792 agg 62862794
>gb|GL894707.2| Sus scrofa unplaced genomic scaffold ChrUScaf2591
Length = 30564
Score = 1065 bits (537), Expect = 0.0
Identities = 553/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Plus
Query: 395 ggggtcctctttgctctctgcttctcgtgcctcttggctcatgcctccaacctggtgaag 454
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 8612 ggggtcctctttgctctctgcttctcgtgcctcttggctcacgcctccaacctggtgaag 8671
Query: 455 ctggtccggggcagagtctccttctcttggaccacaattctgtgcattgctatcggcgtc 514
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8672 ctggtccggggcagagtctccttctcttggaccacaattttgtgcattgctatcggcgtc 8731
Query: 515 agcctcttgcagacaatcattgctattgagtacgtgactctcataatgaccagaggtatg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8732 agcctcttgcagacaatcattgctattgagtacgtgactctcataatgaccagaggtatg 8791
Query: 575 aggtttgtgcacatgacaccctgtcagctccacgtggactttgtggtcctgctggtgtac 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8792 aggtttgtgcacatgacaccctgtcagctccacgtggactttgtggtcctgctggtgtac 8851
Query: 635 gtcctcttcctgatggccctcacgttcttcgtcgccaaagccaccttctgtggcccgtgc 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8852 gtcctcttcctgatggccctcacgttcttcgtcgccaaagccaccttctgtggcccgtgc 8911
Query: 695 gagaactggaaacagcacggacggctcatcttcgtcacggtgctcatttccatcattatc 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8912 gagaactggaaacagcacggacggctcatcttcgtcacggtgctcatttccatcattatc 8971
Query: 755 tgggtggtgtggatctccctgctgatgagaggcaacccgcagccccagtgggacgacccc 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8972 tgggtggtgtggatctccctgctgatgagaggcaacccgcagccccagtgggacgacccc 9031
Query: 815 atcatctgcatcgccctggtgaccaacgcatgggttttcctgctgctgtacatcatcccg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9032 atcatctgcatcgccctggtgaccaacgcatgggttttcctgctgctgtacatcatcccg 9091
Query: 875 gagctgtgcattctctacaggtccagtaggcaggatcaccctctgc-agctggtgcctgc 933
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 9092 gagctgtgcattctctacaggtccagtaggcaggatcgccctctgcaagctggtgcctgc 9151
Query: 934 ccggtccccgcttacca 950
|||||||||||||||||
Sbjct: 9152 ccggtccccgcttacca 9168
Score = 575 bits (290), Expect = e-161
Identities = 314/323 (97%), Gaps = 8/323 (2%)
Strand = Plus / Plus
Query: 61 aggggaaacacaagaccattctcaggaggcccacttacacgtcaccatgtacgaggactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8189 aggggaaacacaagaccattctcaggaggcccacttacacgtcaccatgtacgaggactg 8248
Query: 121 cgtgaagtccactggggactataacctcttctgtgacactga--------gggaccatgg 172
||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 8249 cgtgaagtccactggggactataacctattctgtgacactgagggnctgagggaccatgg 8308
Query: 173 ggcattgttctggagtccctggcagccatcggcatagtggttacagtgatactgctcttg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8309 ggcattgttctggagtccctggcagccatcggcatagtggttacagtgatactgctcttg 8368
Query: 233 gcatttctcttcctcatgcgaagggtccgggactgcagccagtggaacgttctccccacc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8369 gcatttctcttcctcatgcgaagggtccgggactgcagccagtggaacgttctccccacc 8428
Query: 293 cagttcctcttcctcttgggtgtgctggggctctttggcctggcttttgccttcatcatc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8429 cagttcctcttcctcttgggtgtgctggggctctttggcctggcttttgccttcatcatc 8488
Query: 353 cagttcaatgagcaaacagcccc 375
|||||||||||||||||||||||
Sbjct: 8489 cagttcaatgagcaaacagcccc 8511
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 attggcagttaccacctcgaagcaactacaaccttggcttccagcgtgtggacacagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7226 attggcagttaccacctcgaagcaactacaaccttggcttccagcgtgtggacacagagg 7285
Query: 61 agg 63
|||
Sbjct: 7286 agg 7288
>gb|GL896435.1| Sus scrofa unplaced genomic scaffold chrU_scaffold776
Length = 9920
Score = 69.9 bits (35), Expect = 2e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 284 ctccccacccagttcctcttcctcttgggtgtgctggggctctttggcctggcttttgcc 343
||||||| |||||||||||||||| |||| ||||||||| |||| ||||| | || |||
Sbjct: 9200 ctccccatccagttcctcttcctcctgggcgtgctgggggtcttcggcctcaccttcgcc 9141
Query: 344 ttcatcatcca 354
|||||||||||
Sbjct: 9140 ttcatcatcca 9130
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,552,408
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 7
Length of query: 950
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 929
Effective length of database: 2,808,413,156
Effective search space: 2609015821924
Effective search space used: 2609015821924
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)