Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013682
(739 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536932.2| PREDICTED: similar to Acyl carrier protein, mit... 259 2e-69
>ref|XP_536932.2| PREDICTED: similar to Acyl carrier protein, mitochondrial precursor
(ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit)
(CI-SDAP) [Canis familiaris].
Length = 172
Score = 259 bits (662), Expect = 2e-69
Identities = 134/171 (78%), Positives = 139/171 (81%)
Frame = +3
Query: 33 LDQRARRSVYWVGVAMAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARS 212
L + A RS WVG MAARVL ACVRRLPAA APLPR+PT+ AARPL TTL P GA+ R
Sbjct: 4 LGRSAGRSASWVGAGMAARVLSACVRRLPAALAPLPRVPTLAAARPLGTTLCPAGARTRP 63
Query: 213 RXXXXXXXXXXXXGGVTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFM 392
G TQLCR+YSDAPPLTLE IKDRVLYVLKLYDKIDPEKLSVNSHFM
Sbjct: 64 GARQAAPVLAQVPG--TQLCRQYSDAPPLTLEGIKDRVLYVLKLYDKIDPEKLSVNSHFM 121
Query: 393 KDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 545
KDLGLDSLDQVEIIMAMEDEFGFEIPD DAEKLMCPQEIVDYIADKKDVYE
Sbjct: 122 KDLGLDSLDQVEIIMAMEDEFGFEIPDTDAEKLMCPQEIVDYIADKKDVYE 172
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,362,918
Number of extensions: 774050
Number of successful extensions: 3480
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3473
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 146
Effective length of database: 15,540,904
Effective search space: 2268971984
Effective search space used: 2268971984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-013682
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013682
(739 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035578.1| acyl carrier protein, mitochondrial precurso... 254 7e-68
>ref|NP_001035578.1| acyl carrier protein, mitochondrial precursor [Bos taurus].
Length = 156
Score = 254 bits (648), Expect = 7e-68
Identities = 128/156 (82%), Positives = 132/156 (84%)
Frame = +3
Query: 78 MAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARSRXXXXXXXXXXXXGG 257
MA RVLCACVRRLP AFAPLPR+PT+ AARPLSTTLF + R G
Sbjct: 1 MAVRVLCACVRRLPTAFAPLPRLPTLAAARPLSTTLFAAETRTRPGAPLPALVLAQVPGR 60
Query: 258 VTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 437
VTQLCR+YSDAPPLTLE IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM
Sbjct: 61 VTQLCRQYSDAPPLTLEGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 120
Query: 438 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 545
AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE
Sbjct: 121 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 156
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,282,691
Number of extensions: 761287
Number of successful extensions: 3364
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3355
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 146
Effective length of database: 14,372,574
Effective search space: 2098395804
Effective search space used: 2098395804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013682
(739 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161124.1| acyl carrier protein, mitochondrial [Sus scr... 281 2e-76
>ref|NP_001161124.1| acyl carrier protein, mitochondrial [Sus scrofa].
Length = 156
Score = 281 bits (720), Expect = 2e-76
Identities = 143/156 (91%), Positives = 143/156 (91%)
Frame = +3
Query: 78 MAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARSRXXXXXXXXXXXXGG 257
MAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARSR G
Sbjct: 1 MAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARSRALQPALVLAQAPSG 60
Query: 258 VTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 437
VTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM
Sbjct: 61 VTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 120
Query: 438 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 545
AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE
Sbjct: 121 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 156
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,719,086
Number of extensions: 511353
Number of successful extensions: 2172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2165
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,953,820
Effective search space: 1343073000
Effective search space used: 1343073000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013682
(739 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001480523.1| PREDICTED: acyl carrier protein, mitochondri... 253 8e-68
Alignment gi|NP_082453.2| acyl carrier protein, mitochondrial precursor [... 253 1e-67
>ref|XP_001480523.1| PREDICTED: acyl carrier protein, mitochondrial-like [Mus musculus].
Length = 156
Score = 253 bits (647), Expect = 8e-68
Identities = 127/156 (81%), Positives = 133/156 (85%)
Frame = +3
Query: 78 MAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARSRXXXXXXXXXXXXGG 257
MA+RVLCACVRRLPAAFAPLPR+PT+ ARPLSTTL P G + R G
Sbjct: 1 MASRVLCACVRRLPAAFAPLPRLPTLALARPLSTTLCPEGIRRRPEALQSALALAQVPGT 60
Query: 258 VTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 437
VT LCR+YSDAPPLTL+ IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM
Sbjct: 61 VTHLCRQYSDAPPLTLDGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 120
Query: 438 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 545
AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE
Sbjct: 121 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 156
>ref|NP_082453.2| acyl carrier protein, mitochondrial precursor [Mus musculus].
Length = 156
Score = 253 bits (645), Expect = 1e-67
Identities = 127/156 (81%), Positives = 133/156 (85%)
Frame = +3
Query: 78 MAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARSRXXXXXXXXXXXXGG 257
MA+RVLCACVRRLPAAFAPLPR+PT+ ARPLSTTL P G + R G
Sbjct: 1 MASRVLCACVRRLPAAFAPLPRLPTLALARPLSTTLCPEGIRRRPGALQSALALAQVPGT 60
Query: 258 VTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 437
VT LCR+YSDAPPLTL+ IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM
Sbjct: 61 VTHLCRQYSDAPPLTLDGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 120
Query: 438 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 545
AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE
Sbjct: 121 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 156
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,548,546
Number of extensions: 625948
Number of successful extensions: 2587
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2586
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 147
Effective length of database: 12,643,995
Effective search space: 1858667265
Effective search space used: 1858667265
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013682
(739 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004994.1| acyl carrier protein, mitochondrial precursor [... 234 6e-62
>ref|NP_004994.1| acyl carrier protein, mitochondrial precursor [Homo sapiens].
Length = 156
Score = 234 bits (597), Expect = 6e-62
Identities = 121/156 (77%), Positives = 126/156 (80%)
Frame = +3
Query: 78 MAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARSRXXXXXXXXXXXXGG 257
MA+RVL A V RLPAAFAPLPR+ + ARPLST L G Q R G
Sbjct: 1 MASRVLSAYVSRLPAAFAPLPRVRMLAVARPLSTALCSAGTQTRLGTLQPALVLAQVPGR 60
Query: 258 VTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 437
VTQLCR+YSD PPLTLE I+DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM
Sbjct: 61 VTQLCRQYSDMPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIM 120
Query: 438 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 545
AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE
Sbjct: 121 AMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE 156
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,779,885
Number of extensions: 748310
Number of successful extensions: 3259
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3256
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 146
Effective length of database: 15,000,764
Effective search space: 2190111544
Effective search space used: 2190111544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013682
(739 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896405.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 561 e-157
Sscrofa_Chr10 460 e-127
Sscrofa_Chr08 285 2e-74
>gb|GL896405.1| Sus scrofa unplaced genomic scaffold chrU_scaffold749
Length = 51762
Score = 561 bits (283), Expect = e-157
Identities = 409/450 (90%), Gaps = 2/450 (0%)
Strand = Plus / Plus
Query: 261 acacagctgtgtcgccggtatagtgacgcgccccctctgacattagaggcgatcaaggac 320
||||||||||| ||| ||| ||||| |||||||| |||||| ||||| | ||||||||
Sbjct: 17720 acacagctgtgctgccagtacggtgacacgccccctttgacatcagagggggtcaaggac 17779
Query: 321 cgtgtcctttacgtcttgaaactctatgacaagatcgatcccgaaaagctctcagtaaat 380
|||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct: 17780 cgtgctctttacgtcttgaacctctatgacaagaccgatcccgaaaagctc--agtaacc 17837
Query: 381 tcccactttatgaaagacctgggcttagacagtttggaccaagtggagattatcatggcc 440
||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 17838 tcccattgtatgaaagacctgggcttagacagtttggactaagtggggattatcatgacc 17897
Query: 441 atggaggacgaatttgggtttgaaattcctgatatagatgcggagaagttaatgtgccca 500
| ||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||
Sbjct: 17898 acggaggacgaatttgggtctgaaattcctgatatagacgcggagaagtcaacgtgccca 17957
Query: 501 caagaaattgtagattacattgcagataagaaggatgtctatgaataaagtatcagaccc 560
|| ||||||||||| || ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 17958 caggaaattgtagactatgttgcagataagaaggatgtatatgaataaagtatcagaccc 18017
Query: 561 cttttcttcactgaagaaaactcagaagatgctggcaggtgtctggaagtgagaacacat 620
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct: 18018 cttttcttcactgaagaaaactcagaagatgctggaatgtgtctggaagtgagaacatat 18077
Query: 621 tctgcatcactgctccctgggacagagtaattctgtttagactgtatttaaattgtctta 680
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 18078 cctgaatcactgctccctgggacagagtaattctgtttagactgtacttaaattgtctca 18137
Query: 681 agtgtttttgccctttgaaaataaatctat 710
||||||||| ||||||||||||||||||||
Sbjct: 18138 agtgtttttaccctttgaaaataaatctat 18167
Score = 129 bits (65), Expect = 2e-27
Identities = 128/149 (85%)
Strand = Plus / Plus
Query: 57 gtatactgggtcggtgtagccatggcggctcgtgtcctctgcgcctgtgtccgccgcctg 116
|||| ||| |||||||| ||| ||||||| |||||||| ||| |||| |||| ||| |||
Sbjct: 17458 gtatcctgcgtcggtgtggccgtggcggcccgtgtcctttgcacctgcgtccaccgtctg 17517
Query: 117 cccgcggcctttgcaccgctgcccaggattcccacggtggtcgcagctcggccgctcagc 176
||||| ||||||||| ||||||||||| |||||| || ||| | ||||| ||| ||||||
Sbjct: 17518 cccgcagcctttgcatcgctgcccaggtttcccatggaggttgaagctcagccactcagc 17577
Query: 177 accaccctgttccccacgggagcccaggc 205
||||| ||||||||||||| |||||||||
Sbjct: 17578 accactctgttccccacggaagcccaggc 17606
>Sscrofa_Chr10
|| Length = 79102373
Score = 460 bits (232), Expect = e-127
Identities = 232/232 (100%)
Strand = Plus / Plus
Query: 15 gcagagcgcgagacgatactggaccagagggcgcggcgcagtgtatactgggtcggtgta 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50603 gcagagcgcgagacgatactggaccagagggcgcggcgcagtgtatactgggtcggtgta 50662
Query: 75 gccatggcggctcgtgtcctctgcgcctgtgtccgccgcctgcccgcggcctttgcaccg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50663 gccatggcggctcgtgtcctctgcgcctgtgtccgccgcctgcccgcggcctttgcaccg 50722
Query: 135 ctgcccaggattcccacggtggtcgcagctcggccgctcagcaccaccctgttccccacg 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50723 ctgcccaggattcccacggtggtcgcagctcggccgctcagcaccaccctgttccccacg 50782
Query: 195 ggagcccaggcgaggtctagggccctgcagccggccttggtgctcgcgcagg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50783 ggagcccaggcgaggtctagggccctgcagccggccttggtgctcgcgcagg 50834
Score = 327 bits (165), Expect = 5e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 553 tcagaccccttttcttcactgaagaaaactcagaagatgctggcaggtgtctggaagtga 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62433 tcagaccccttttcttcactgaagaaaactcagaagatgctggcaggtgtctggaagtga 62492
Query: 613 gaacacattctgcatcactgctccctgggacagagtaattctgtttagactgtatttaaa 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62493 gaacacattctgcatcactgctccctgggacagagtaattctgtttagactgtatttaaa 62552
Query: 673 ttgtcttaagtgtttttgccctttgaaaataaatctattaaagcc 717
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62553 ttgtcttaagtgtttttgccctttgaaaataaatctattaaagcc 62597
Score = 240 bits (121), Expect = 9e-61
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 244 aggctcccggcggagtcacacagctgtgtcgccggtatagtgacgcgccccctctgacat 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 59095 aggctcccggcggagtcacacagatgtgtcgccggtatagtgacgcgccccctctgacat 59154
Query: 304 tagaggcgatcaaggaccgtgtcctttacgtcttgaaactctatgacaagatcgatcccg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59155 tagaggcgatcaaggaccgtgtcctttacgtcttgaaactctatgacaagatcgatcccg 59214
Query: 364 aaaag 368
|||||
Sbjct: 59215 aaaag 59219
Score = 200 bits (101), Expect = 8e-49
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 456 gggtttgaaattcctgatatagatgcggagaagttaatgtgcccacaagaaattgtagat 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61589 gggtttgaaattcctgatatagatgcggagaagttaatgtgcccacaagaaattgtagat 61648
Query: 516 tacattgcagataagaaggatgtctatgaataaagtatcag 556
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61649 tacattgcagataagaaggatgtctatgaataaagtatcag 61689
Score = 180 bits (91), Expect = 7e-43
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 367 agctctcagtaaattcccactttatgaaagacctgggcttagacagtttggaccaagtgg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60049 agctctcagtaaattcccactttatgaaagacctgggcttagacagtttggaccaagtgg 60108
Query: 427 agattatcatggccatggaggacgaatttgg 457
|||||||||||||||||||||||||||||||
Sbjct: 60109 agattatcatggccatggaggacgaatttgg 60139
>Sscrofa_Chr08
|| Length = 148491826
Score = 285 bits (144), Expect = 2e-74
Identities = 414/499 (82%), Gaps = 5/499 (1%)
Strand = Plus / Minus
Query: 214 gggccctgcagccggccttggtgctcgcgcaggctcccggcggagtcacacagctgtgtc 273
|||| |||||||||| | |||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 143080087 gggctctgcagccgggcccggtgctcgcgcaggttccaggcggagttacacagctgtgta 143080028
Query: 274 gccggtatagtgacgcgccccctctgacattagaggcgatcaaggaccgtgtcctttacg 333
||| | | || ||||||||| || ||||| |||| ||| |||||| | |||||||
Sbjct: 143080027 gccagcacagcgacgcgcccacttggacatcagagagcatcgcggaccgagctctttacg 143079968
Query: 334 tcttgaaactctatgacaagatcgatcccgaaaagctctcagtaaattcccactttatga 393
|| |||||| || |||||||| | || ||||||||||| |||||||| | |||||||
Sbjct: 143079967 tcctgaaacgctgggacaagatgcacccagaaaagctctcggtaaattctcgttttatga 143079908
Query: 394 aagacctgggcttagacagtttggaccaagtggagattatcatggccatggaggacgaat 453
|||||||||||| || |||||||||||||| | ||| |||||||||| |||||||||
Sbjct: 143079907 aagacctgggctgaggcagtttggaccaagggaagacgatcatggccacagaggacgaac 143079848
Query: 454 ttgggtttgaaattcctgatatagatgcggagaagttaatgtgcccacaagaaattgtag 513
| |||||||||| |||||| || |||||||||||||||||||||||||||||||| |
Sbjct: 143079847 tcgggtttgaaagtcctgacatgaatgcggagaagttaatgtgcccacaagaaatt-tgc 143079789
Query: 514 attacattgcagataagaaggatgtctatgaataaagtatcagaccccttttcttcactg 573
||||| ||||||||||||||| || |||||||||| |||||||||||||||||||| ||
Sbjct: 143079788 gttacactgcagataagaaggaggtatatgaataaaatatcagaccccttttcttcagtg 143079729
Query: 574 a-agaaaactcagaagatgctggcaggtgtctggaagtgagaacacattctgcatcactg 632
| ||| ||||||||||||||| | ||| |||||||||||||| ||| |||| ||||||
Sbjct: 143079728 agggaagcctcagaagatgctggtaagtgcctggaagtgagaacgcatcctgcctcactg 143079669
Query: 633 ctccctgggacagagtaattctgtttagac-tgtatttaaattgtcttaagtgtttttgc 691
|| |||||||||| ||| |||||| ||||||| ||||||||||| | ||||||
Sbjct: 143079668 ctgatgttgacagagtaa--ctgcttagacgtgtatttgaattgtcttaaatatttttgt 143079611
Query: 692 cctttgaaaataaatctat 710
|||||| ||||||| ||||
Sbjct: 143079610 cctttgcaaataaacctat 143079592
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,647,674
Number of extensions: 412
Number of successful extensions: 412
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 9
Length of query: 739
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 718
Effective length of database: 2,808,413,156
Effective search space: 2016440646008
Effective search space used: 2016440646008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)