Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013686
(882 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851501.1| PREDICTED: similar to NKG2-F type II integral m... 49 5e-06
>ref|XP_851501.1| PREDICTED: similar to NKG2-F type II integral membrane protein
(NKG2-F activating NK receptor) (NK cell receptor F)
[Canis familiaris].
Length = 202
Score = 49.3 bits (116), Expect = 5e-06
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 281 LTEQVERN-TTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNH 457
LTE +E+N ++L N+ K C K W+ + N CYY STE K N S + C N+
Sbjct: 125 LTEILEQNNSSLKTNIQK---AYHCGHCPKEWVTYSNHCYYISTERKPWNESLASCASNN 181
Query: 458 FSLMNTDDSENWNRTQL 508
+L+ DD E R Q+
Sbjct: 182 SNLLYIDDEEELVRFQM 198
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,119,660
Number of extensions: 767408
Number of successful extensions: 1623
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1622
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 192
Effective length of database: 15,474,232
Effective search space: 2971052544
Effective search space used: 2971052544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013686
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013686
(882 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687878.1| PREDICTED: hypothetical protein [Bos taurus]. 159 3e-39
Alignment gi|XP_001253278.2| PREDICTED: hypothetical protein [Bos taurus]. 159 3e-39
Alignment gi|NP_001002890.1| natural killer cells antigen CD94 [Bos tauru... 53 4e-07
>ref|XP_002687878.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 297
Score = 159 bits (402), Expect = 3e-39
Identities = 90/191 (47%), Positives = 117/191 (61%), Gaps = 31/191 (16%)
Frame = +2
Query: 26 DNHDRPELELEDKAETGTGSVEATAKVAESRAMRGHSVPSKVWCTIAFISLSLKLVMLAG 205
D+H+ P+LEL +AETG GS+ TA+V ESRAM+GHS PSKVW IAF+SLSL L++LAG
Sbjct: 30 DSHETPDLELGGEAETGAGSIRGTAEVTESRAMKGHSAPSKVWYPIAFVSLSLNLLVLAG 89
Query: 206 LGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDVNVPKNVSGQGFYS--------- 358
LG L LM+YYKL ++ T D+QL +T+ +E TTL ++P VS S
Sbjct: 90 LGALGLMHYYKLIFNSKTVYDVQLNVTDHME-TTTLPTDMPTTVSVASVVSDSVRPHRRQ 148
Query: 359 ----------------------CSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMN 472
CS++WI +G+ Y FST++ NT +SDCEKNH SLMN
Sbjct: 149 PTSLPSPWVSPDCPYSDPALHLCSEIWIQYGSNFYNFSTKI-ICNTCDSDCEKNHSSLMN 207
Query: 473 TDDSENWNRTQ 505
DD EN NRT+
Sbjct: 208 MDDGENRNRTK 218
Score = 68.2 bits (165), Expect = 9e-12
Identities = 44/83 (53%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 538 LDGSEFHSRQHKSDRGGCFKHFHVDLFGTHISISSAGTVTYSVFNGNGII*KSKNSSRY- 714
+D E +R KS G F + FGT ISISSA TV ++VFNGN I KSK SS Y
Sbjct: 208 MDDGENRNRT-KSQEGEGNYVFPIVRFGTSISISSAKTVKHAVFNGNLTIGKSKESSSYC 266
Query: 715 ICENKVNVPNSQSQVNANTLSLL 783
CENKV+VPNSQ VN++T L
Sbjct: 267 TCENKVDVPNSQPYVNSSTYKSL 289
>ref|XP_001253278.2| PREDICTED: hypothetical protein [Bos taurus].
Length = 297
Score = 159 bits (402), Expect = 3e-39
Identities = 90/191 (47%), Positives = 117/191 (61%), Gaps = 31/191 (16%)
Frame = +2
Query: 26 DNHDRPELELEDKAETGTGSVEATAKVAESRAMRGHSVPSKVWCTIAFISLSLKLVMLAG 205
D+H+ P+LEL +AETG GS+ TA+V ESRAM+GHS PSKVW IAF+SLSL L++LAG
Sbjct: 30 DSHETPDLELGGEAETGAGSIRGTAEVTESRAMKGHSAPSKVWYPIAFVSLSLNLLVLAG 89
Query: 206 LGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDVNVPKNVSGQGFYS--------- 358
LG L LM+YYKL ++ T D+QL +T+ +E TTL ++P VS S
Sbjct: 90 LGALGLMHYYKLIFNSKTVYDVQLNVTDHME-TTTLPTDMPTTVSVASVVSDSVRPHRRQ 148
Query: 359 ----------------------CSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMN 472
CS++WI +G+ Y FST++ NT +SDCEKNH SLMN
Sbjct: 149 PTSLPSPWVSPDCPYSDPALHLCSEIWIQYGSNFYNFSTKI-ICNTCDSDCEKNHSSLMN 207
Query: 473 TDDSENWNRTQ 505
DD EN NRT+
Sbjct: 208 MDDGENRNRTK 218
Score = 68.2 bits (165), Expect = 9e-12
Identities = 44/83 (53%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 538 LDGSEFHSRQHKSDRGGCFKHFHVDLFGTHISISSAGTVTYSVFNGNGII*KSKNSSRY- 714
+D E +R KS G F + FGT ISISSA TV ++VFNGN I KSK SS Y
Sbjct: 208 MDDGENRNRT-KSQEGEGNYVFPIVRFGTSISISSAKTVKHAVFNGNLTIGKSKESSSYC 266
Query: 715 ICENKVNVPNSQSQVNANTLSLL 783
CENKV+VPNSQ VN++T L
Sbjct: 267 TCENKVDVPNSQPYVNSSTYKSL 289
>ref|NP_001002890.1| natural killer cells antigen CD94 [Bos taurus].
Length = 190
Score = 52.8 bits (125), Expect = 4e-07
Identities = 41/151 (27%), Positives = 65/151 (43%)
Frame = +2
Query: 152 WCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDVNVPK 331
W I+ + + LV++A LG L+ + K ++D+Q E + L
Sbjct: 9 WRLISGVLGVICLVLMAALGVLLKNSLTKRSVQPGPSADLQEEYNLHEEEESCL------ 62
Query: 332 NVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMNTDDSENWNRTQLF 511
SG G YSC + WI + CY S ELKT S C ++ SL+ R +L
Sbjct: 63 GCSGSGCYSCQEKWIGYQCNCYLISNELKTWKDSRDFCVSHNSSLLQIQ-----TRNELA 117
Query: 512 FRCLPSPVSWMDLNFTLDNTNQTEEDVSNIS 604
F + W+ L++ ++ ED S +S
Sbjct: 118 FMKFSTSFYWIGLSYDEEHHAWLWEDNSTLS 148
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,875,241
Number of extensions: 750360
Number of successful extensions: 1766
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1758
Number of HSP's successfully gapped: 5
Length of query: 294
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 193
Effective length of database: 14,339,486
Effective search space: 2767520798
Effective search space used: 2767520798
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013686
(882 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126536.1| PREDICTED: hypothetical protein LOC100520308... 355 2e-98
>ref|XP_003126536.1| PREDICTED: hypothetical protein LOC100520308 [Sus scrofa].
Length = 169
Score = 355 bits (911), Expect = 2e-98
Identities = 169/169 (100%), Positives = 169/169 (100%)
Frame = +2
Query: 122 MRGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVER 301
MRGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVER
Sbjct: 1 MRGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVER 60
Query: 302 NTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMNTDD 481
NTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMNTDD
Sbjct: 61 NTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMNTDD 120
Query: 482 SENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTEEDVSNISMLTCLAPT 628
SENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTEEDVSNISMLTCLAPT
Sbjct: 121 SENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTEEDVSNISMLTCLAPT 169
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,779,582
Number of extensions: 474820
Number of successful extensions: 1127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,904,026
Effective search space: 1745189096
Effective search space used: 1745189096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013686
(882 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191152.1| C-type lectin domain family 12 member B [Mus... 53 4e-07
Alignment gi|NP_081985.1| C-type lectin domain family 12 member B [Mus mu... 53 4e-07
>ref|NP_001191152.1| C-type lectin domain family 12 member B [Mus musculus].
Length = 275
Score = 52.8 bits (125), Expect = 4e-07
Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 40/221 (18%)
Frame = +2
Query: 53 LEDKAETGTGSVEATAKVAESR-----AMRGHSVPSKVWCTIAFISLSLKLVMLAGLGTL 217
+ D+ T ++ +A+V +R GH S +W A ++L LV++ GL TL
Sbjct: 1 MSDEVTYATLMLQDSARVRGNRDGNNLRKEGHPAQSSLWRGAALSLMTLCLVLVTGLVTL 60
Query: 218 VLM----------------------------------NYYKLFSSNTTASDMQLVLTEQV 295
M + K + + S + +L Q
Sbjct: 61 ATMFLQVSNDINSDSEKLSQLQKSIHPQQDNLSESLNSSRKSLTEESLQSQISALLERQE 120
Query: 296 ERNTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFS-TELKTSNTSNSDCEKNHFSLMN 472
+ T L + S C K W W+GN CYYFS E K+ + S DC + +L+
Sbjct: 121 QMATKLCKEFLIHASDHKCNPCPKTWQWYGNSCYYFSINEEKSWSDSRKDCIDKNATLVK 180
Query: 473 TDDSENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTEEDVS 595
D +E + Q L W+ L++ N ED S
Sbjct: 181 IDSTEERDLLQSQL-SLTFSFFWLGLSWNSSGRNWLWEDGS 220
>ref|NP_081985.1| C-type lectin domain family 12 member B [Mus musculus].
Length = 275
Score = 52.8 bits (125), Expect = 4e-07
Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 40/221 (18%)
Frame = +2
Query: 53 LEDKAETGTGSVEATAKVAESR-----AMRGHSVPSKVWCTIAFISLSLKLVMLAGLGTL 217
+ D+ T ++ +A+V +R GH S +W A ++L LV++ GL TL
Sbjct: 1 MSDEVTYATLMLQDSARVRGNRDGNNLRKEGHPAQSSLWRGAALSLMTLCLVLVTGLVTL 60
Query: 218 VLM----------------------------------NYYKLFSSNTTASDMQLVLTEQV 295
M + K + + S + +L Q
Sbjct: 61 ATMFLQVSNDINSDSEKLSQLQKSIHPQQDNLSESLNSSRKSLTEESLQSQISALLERQE 120
Query: 296 ERNTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFS-TELKTSNTSNSDCEKNHFSLMN 472
+ T L + S C K W W+GN CYYFS E K+ + S DC + +L+
Sbjct: 121 QMATKLCKEFLIHASDHKCNPCPKTWQWYGNSCYYFSINEEKSWSDSRKDCIDKNATLVK 180
Query: 473 TDDSENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTEEDVS 595
D +E + Q L W+ L++ N ED S
Sbjct: 181 IDSTEERDLLQSQL-SLTFSFFWLGLSWNSSGRNWLWEDGS 220
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,325,982
Number of extensions: 668171
Number of successful extensions: 1650
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1645
Number of HSP's successfully gapped: 4
Length of query: 294
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 193
Effective length of database: 12,583,923
Effective search space: 2428697139
Effective search space used: 2428697139
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013686
(882 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123470.1| C-type lectin domain family 12 member B isof... 51 2e-06
Alignment gi|NP_995324.2| C-type lectin domain family 12 member B isoform... 51 2e-06
Alignment gi|NP_001193939.1| C-type lectin domain family 12 member A isof... 51 2e-06
Alignment gi|NP_612210.4| C-type lectin domain family 12 member A isoform... 51 2e-06
>ref|NP_001123470.1| C-type lectin domain family 12 member B isoform 1 [Homo sapiens].
Length = 276
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 36/157 (22%)
Frame = +2
Query: 125 RGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLM----------NYYKLFSSNTTASDMQ 274
RGH PS +W A ++L L++L GL TL +M + KL T Q
Sbjct: 30 RGHPAPSPIWRHAALGLVTLCLMLLIGLVTLGMMFLQISNDINSDSEKLSQLQKTIQQQQ 89
Query: 275 LVLTEQVERNTTLDV----------NVPK---------------NVSGQGFYSCSKLWIW 379
L++Q+ + L + +V K + S C K+W W
Sbjct: 90 DNLSQQLGNSNNLSMEEEFLKSQISSVLKRQEQMAIKLCQELIIHTSDHRCNPCPKMWQW 149
Query: 380 HGNCCYYFST-ELKTSNTSNSDCEKNHFSLMNTDDSE 487
+ N CYYF+T E KT S DC + +L+ D E
Sbjct: 150 YQNSCYYFTTNEEKTWANSRKDCIDKNSTLVKIDSLE 186
>ref|NP_995324.2| C-type lectin domain family 12 member B isoform 2 [Homo sapiens].
Length = 232
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 36/157 (22%)
Frame = +2
Query: 125 RGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLM----------NYYKLFSSNTTASDMQ 274
RGH PS +W A ++L L++L GL TL +M + KL T Q
Sbjct: 30 RGHPAPSPIWRHAALGLVTLCLMLLIGLVTLGMMFLQISNDINSDSEKLSQLQKTIQQQQ 89
Query: 275 LVLTEQVERNTTLDV----------NVPK---------------NVSGQGFYSCSKLWIW 379
L++Q+ + L + +V K + S C K+W W
Sbjct: 90 DNLSQQLGNSNNLSMEEEFLKSQISSVLKRQEQMAIKLCQELIIHTSDHRCNPCPKMWQW 149
Query: 380 HGNCCYYFST-ELKTSNTSNSDCEKNHFSLMNTDDSE 487
+ N CYYF+T E KT S DC + +L+ D E
Sbjct: 150 YQNSCYYFTTNEEKTWANSRKDCIDKNSTLVKIDSLE 186
>ref|NP_001193939.1| C-type lectin domain family 12 member A isoform 3 [Homo sapiens].
Length = 275
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 26/176 (14%)
Frame = +2
Query: 140 PSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDV 319
PS VW A L L++L GLG L M + L + +Q + +E+++RN +L +
Sbjct: 45 PSHVWRPAALFLTLLCLLLLIGLGVLASMFHVTLKIEMKKMNKLQNI-SEELQRNISLQL 103
Query: 320 NVPKNVSGQ-----------------GFYS---------CSKLWIWHGNCCYYFSTELKT 421
N+S + YS C + WIWH + CY+ S +++T
Sbjct: 104 MSNMNISNKIRNLSTTLQTIATKLCRELYSKEQEHKCKPCPRRWIWHKDSCYFLSDDVQT 163
Query: 422 SNTSNSDCEKNHFSLMNTDDSENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTEED 589
S C + SL+ + N N + S W+ L+ D+T D
Sbjct: 164 WQESKMACAAQNASLLKIN---NKNALEFIKSQSRSYDYWLGLSPEEDSTRGMRVD 216
>ref|NP_612210.4| C-type lectin domain family 12 member A isoform 1 [Homo sapiens].
Length = 265
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 26/176 (14%)
Frame = +2
Query: 140 PSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDV 319
PS VW A L L++L GLG L M + L + +Q + +E+++RN +L +
Sbjct: 35 PSHVWRPAALFLTLLCLLLLIGLGVLASMFHVTLKIEMKKMNKLQNI-SEELQRNISLQL 93
Query: 320 NVPKNVSGQ-----------------GFYS---------CSKLWIWHGNCCYYFSTELKT 421
N+S + YS C + WIWH + CY+ S +++T
Sbjct: 94 MSNMNISNKIRNLSTTLQTIATKLCRELYSKEQEHKCKPCPRRWIWHKDSCYFLSDDVQT 153
Query: 422 SNTSNSDCEKNHFSLMNTDDSENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTEED 589
S C + SL+ + N N + S W+ L+ D+T D
Sbjct: 154 WQESKMACAAQNASLLKIN---NKNALEFIKSQSRSYDYWLGLSPEEDSTRGMRVD 206
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,826,648
Number of extensions: 781826
Number of successful extensions: 1851
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1846
Number of HSP's successfully gapped: 4
Length of query: 294
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 192
Effective length of database: 14,934,836
Effective search space: 2867488512
Effective search space used: 2867488512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013686
(882 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 500 e-139
>Sscrofa_Chr05
|| Length = 111506441
Score = 500 bits (252), Expect = e-139
Identities = 266/268 (99%), Gaps = 2/268 (0%)
Strand = Plus / Plus
Query: 615 gtttggcacccacataagtatttcaagtgctggaacagtgacgtattcagtattcaatgg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64796642 gtttggcacccacataagtatttcaagtgctggaacagtgacgtattcagtattcaatgg 64796701
Query: 675 aaatggaataatttgaaaatctaagaactctagtcgttacatctgtgaaaacaaagtaaa 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64796702 aaatggaataatttgaaaatctaagaactctagtcgttacatctgtgaaaacaaagtaaa 64796761
Query: 735 tgtaccaaattctcaatctcaagtaaatgcaaacactcttagtttattataatagcgtgg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64796762 tgtaccaaattctcaatctcaagtaaatgcaaacactcttagtttattataatagcgtgg 64796821
Query: 795 catatagaaataacccatat-agctgaaactatgcaaaaacagtctcacaatcaaatgaa 853
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 64796822 catatagaaataa-ccatataagctgaaactatgcaaaaacagtctcacaatcaaatgaa 64796880
Query: 854 ggagccctgtcctggcgcagaagaaatg 881
||||||||||||||||||||||||||||
Sbjct: 64796881 ggagccctgtcctggcgcagaagaaatg 64796908
Score = 325 bits (164), Expect = 2e-86
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 338 tcaggccaagggttttactcttgctccaagctgtggatatggcatggaaactgctgttac 397
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64791177 tcaggccaaggattttactcttgctccaagctgtggatatggcatggaaactgctgttac 64791236
Query: 398 tacttttccaccgaactaaagacttccaatacgagtaacagtgattgcgaaaagaatcat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64791237 tacttttccaccgaactaaagacttccaatacgagtaacagtgattgcgaaaagaatcat 64791296
Query: 458 ttctccctgatgaatacagacgacagtgaaaattggaatagaacccag 505
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64791297 ttctccctgatgaatacagacgacagtgaaaattggaatagaacccag 64791344
Score = 224 bits (113), Expect = 6e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 18 cctgaaaagataatcatgacaggccagagttggagctggaagataaagctgaaactggaa 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64779343 cctgaaaagataatcatgacaggccagagttggagctggaagataaagctgaaactggaa 64779402
Query: 78 cagggagtgttgaggccacagctaaggtcgctgagagcagagctatgagaggt 130
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64779403 cagggagtgttgaggccacagctaaggtcgctgagagcagagctatgagaggt 64779455
Score = 224 bits (113), Expect = 6e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 504 agctgttctttagatgtcttccatcgcctgtttcctggatggatctgaatttcactctcg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64795190 agctgttctttagatgtcttccatcgcctgtttcctggatggatctgaatttcactctcg 64795249
Query: 564 acaacacaaatcagacagaggaggatgtttcaaacatttccatgttgacttgt 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64795250 acaacacaaatcagacagaggaggatgtttcaaacatttccatgttgacttgt 64795302
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 228 attactacaaactcttcagcagcaacacaacagcttctgacatgcaactagtcctcacgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64788418 attactacaaactcttcagcagcaacacaacagcttctgacatgcaactagtcctcacgg 64788477
Query: 288 aacaggtggagagaaacacaacattagatgtgaacgtgcctaaaaatgtctcagg 342
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 64788478 aacaggtggagagaaacacaacattagatgtgaatgtgcctaaaaatgtctcagg 64788532
Score = 200 bits (101), Expect = 9e-49
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 127 aggtcatagtgttccatcaaaggtgtggtgcactattgctttcatctcactctcgctgaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64784437 aggtcatagtgttccatcaaaggtgtggtgcactattgctttcatctcactctcgctgaa 64784496
Query: 187 actggtgatgctggctggactgggaaccctagtcctaatga 227
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 64784497 actggtgatgctggctggactgggaaccctagtcctaatga 64784537
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,650,105
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 6
Length of query: 882
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 861
Effective length of database: 2,808,413,156
Effective search space: 2418043727316
Effective search space used: 2418043727316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)