Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013690
(1153 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002690553.1| PREDICTED: chromosome 14 open reading frame ... 223 2e-58
Alignment gi|XP_002700602.1| PREDICTED: chromosome 14 open reading frame ... 223 2e-58
>ref|XP_002690553.1| PREDICTED: chromosome 14 open reading frame 119-like [Bos taurus].
Length = 142
Score = 223 bits (568), Expect = 2e-58
Identities = 105/120 (87%), Positives = 108/120 (90%)
Frame = +3
Query: 162 DNISDSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKXXXXXXXXXXX 341
DNIS+SSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGK
Sbjct: 23 DNISNSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKLQPLLESLEQL 82
Query: 342 XVSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEISEPDFVAKFYQAVAATAGKD 521
VSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLE+SEPDFVAKFYQAVAATAGK+
Sbjct: 83 SVSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEVSEPDFVAKFYQAVAATAGKE 142
>ref|XP_002700602.1| PREDICTED: chromosome 14 open reading frame 119-like [Bos taurus].
Length = 142
Score = 223 bits (568), Expect = 2e-58
Identities = 105/120 (87%), Positives = 108/120 (90%)
Frame = +3
Query: 162 DNISDSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKXXXXXXXXXXX 341
DNIS+SSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGK
Sbjct: 23 DNISNSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKLQPLLESLEQL 82
Query: 342 XVSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEISEPDFVAKFYQAVAATAGKD 521
VSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLE+SEPDFVAKFYQAVAATAGK+
Sbjct: 83 SVSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEVSEPDFVAKFYQAVAATAGKE 142
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,953,836
Number of extensions: 1162735
Number of successful extensions: 2742
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2738
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013690
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013690
(1153 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848372.1| PREDICTED: similar to Protein C14orf119 [Canis ... 211 1e-54
>ref|XP_848372.1| PREDICTED: similar to Protein C14orf119 [Canis familiaris].
Length = 142
Score = 211 bits (536), Expect = 1e-54
Identities = 100/120 (83%), Positives = 103/120 (85%)
Frame = +3
Query: 162 DNISDSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKXXXXXXXXXXX 341
D+I+DSSPPPMSYITSQEMKCILHWFASWSGPQ ERFLQDLVA AVPGK
Sbjct: 23 DSITDSSPPPMSYITSQEMKCILHWFASWSGPQDERFLQDLVAMAVPGKLQPLLEGLEQL 82
Query: 342 XVSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEISEPDFVAKFYQAVAATAGKD 521
VS ANRPPCIFECQLRLWDQWFRGWAEQE NEFVRQLE+SEPDFV KFYQAVAATAGKD
Sbjct: 83 SVSRANRPPCIFECQLRLWDQWFRGWAEQECNEFVRQLEVSEPDFVTKFYQAVAATAGKD 142
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,007,758
Number of extensions: 1200895
Number of successful extensions: 2963
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2963
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013690
(1153 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128599.1| PREDICTED: uncharacterized protein C14orf119... 227 1e-59
>ref|XP_003128599.1| PREDICTED: uncharacterized protein C14orf119 homolog [Sus scrofa].
Length = 142
Score = 227 bits (578), Expect = 1e-59
Identities = 108/120 (90%), Positives = 108/120 (90%)
Frame = +3
Query: 162 DNISDSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKXXXXXXXXXXX 341
DNISDSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGK
Sbjct: 23 DNISDSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKLQPLLESLEQL 82
Query: 342 XVSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEISEPDFVAKFYQAVAATAGKD 521
VSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEISEPDFVAKFYQAVAATAGKD
Sbjct: 83 SVSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEISEPDFVAKFYQAVAATAGKD 142
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,929,214
Number of extensions: 746026
Number of successful extensions: 1874
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1871
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013690
(1153 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067412.1| hypothetical protein LOC58248 [Mus musculus]. 215 5e-56
>ref|NP_067412.1| hypothetical protein LOC58248 [Mus musculus].
Length = 142
Score = 215 bits (548), Expect = 5e-56
Identities = 101/120 (84%), Positives = 106/120 (88%)
Frame = +3
Query: 162 DNISDSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKXXXXXXXXXXX 341
D+I+ SSPPPMSYITSQEMKCIL+WFASWSGPQRERFLQDLVAKAVPGK
Sbjct: 23 DDIASSSPPPMSYITSQEMKCILYWFASWSGPQRERFLQDLVAKAVPGKLQPLLDALEQL 82
Query: 342 XVSGANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEISEPDFVAKFYQAVAATAGKD 521
+S ANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLE+SEPDFVAKFYQAVAATAGKD
Sbjct: 83 SMSAANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEVSEPDFVAKFYQAVAATAGKD 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,305,531
Number of extensions: 1003498
Number of successful extensions: 2424
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2418
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013690
(1153 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060394.1| uncharacterized protein C14orf119 [Homo sapiens]. 197 2e-50
>ref|NP_060394.1| uncharacterized protein C14orf119 [Homo sapiens].
Length = 140
Score = 197 bits (501), Expect = 2e-50
Identities = 94/117 (80%), Positives = 99/117 (84%)
Frame = +3
Query: 171 SDSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKXXXXXXXXXXXXVS 350
++ SPP MSYITSQEMKCILHWFA+WSGPQRERFL+DLVAKAVP K VS
Sbjct: 24 TNPSPPLMSYITSQEMKCILHWFANWSGPQRERFLEDLVAKAVPEKLQPLLDSLEQLSVS 83
Query: 351 GANRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEISEPDFVAKFYQAVAATAGKD 521
GA+RPP IFECQL LWDQWFRGWAEQERNEFVRQLE SEPDFVAKFYQAVAATAGKD
Sbjct: 84 GADRPPSIFECQLHLWDQWFRGWAEQERNEFVRQLEFSEPDFVAKFYQAVAATAGKD 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,236,729
Number of extensions: 1190586
Number of successful extensions: 2873
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2871
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013690
(1153 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 2097 0.0
Sscrofa_Chr15 70 3e-09
Sscrofa_Chr17 68 1e-08
Sscrofa_Chr01 68 1e-08
Sscrofa_Chr10 66 5e-08
Sscrofa_Chr06 66 5e-08
Sscrofa_ChrX 62 7e-07
Sscrofa_Chr08 62 7e-07
Sscrofa_Chr05 60 3e-06
Sscrofa_Chr04 60 3e-06
>Sscrofa_Chr07
|| Length = 134764511
Score = 2097 bits (1058), Expect = 0.0
Identities = 1060/1061 (99%)
Strand = Plus / Minus
Query: 93 aggatgccactggagtcatcttcctcttcgatgccactatctttcccttctcccttaccc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284846 aggatgccactggagtcatcttcctcttcgatgccactatctttcccttctcccttaccc 81284787
Query: 153 tcggtaccagacaatatttctgactcttcccctcctccaatgtcttacatcacttcccag 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284786 tcggtaccagacaatatttctgactcttcccctcctccaatgtcttacatcacttcccag 81284727
Query: 213 gagatgaaatgtattcttcattggtttgccagctggtcaggtcctcagcgtgaacgtttc 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284726 gagatgaaatgtattcttcattggtttgccagctggtcaggtcctcagcgtgaacgtttc 81284667
Query: 273 ctacaggacctggttgctaaggcagtaccaggaaaattacagccactgctggaaagtcta 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284666 ctacaggacctggttgctaaggcagtaccaggaaaattacagccactgctggaaagtcta 81284607
Query: 333 gagcagcttagtgtgtctggagcaaaccgaccaccttgtatctttgagtgccagctacgt 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284606 gagcagcttagtgtgtctggagcaaaccgaccaccttgtatctttgagtgccagctacgt 81284547
Query: 393 ctttgggatcagtggtttcgaggttgggctgagcaggagcgcaatgaatttgtcaggcag 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284546 ctttgggatcagtggtttcgaggttgggctgagcaggagcgcaatgaatttgtcaggcag 81284487
Query: 453 ctggagatcagtgagccagactttgtggcaaagttttaccaagcagtggctgctacagct 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284486 ctggagatcagtgagccagactttgtggcaaagttttaccaagcagtggctgctacagct 81284427
Query: 513 ggtaaagactgacaggtattaaaatcaaagaagataaccagaagtgttggagccaaggcc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284426 ggtaaagactgacaggtattaaaatcaaagaagataaccagaagtgttggagccaaggcc 81284367
Query: 573 acaactttaccatgagaatttcgcatgtattacttaaaggtatggggatggtattccaat 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284366 acaactttaccatgagaatttcgcatgtattacttaaaggtatggggatggtattccaat 81284307
Query: 633 cagctgtctgaactcgctgaagtacaggcctggtgatttcaacgtgaacagcctatcagc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284306 cagctgtctgaactcgctgaagtacaggcctggtgatttcaacgtgaacagcctatcagc 81284247
Query: 693 tggactcctgataaatgtgtaaatgtcctccatcggagtgaatccagatcatcagtctgc 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284246 tggactcctgataaatgtgtaaatgtcctccatcggagtgaatccagatcatcagtctgc 81284187
Query: 753 ctcctacttggttcgttccaagacatgtcaaaccctcaaagaatttaaagacttttgcaa 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284186 ctcctacttggttcgttccaagacatgtcaaaccctcaaagaatttaaagacttttgcaa 81284127
Query: 813 ccataaccaaaaggaatctatacattatacacattgctggcctgtggggtataaagtaga 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284126 ccataaccaaaaggaatctatacattatacacattgctggcctgtggggtataaagtaga 81284067
Query: 873 gccttcctattccagaaaggggccgtaaaaggtcacgtttttataacttacctggattcg 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284066 gccttcctattccagaaaggggccgtaaaaggtcacgtttttataacttacctggattcg 81284007
Query: 933 gatggtggtttcaccactcctaccagcttctggcataattatgtgagatttaaactgcaa 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81284006 gatggtggtttcaccactcctaccagcttctggcataattatgtgagatttaaactgcaa 81283947
Query: 993 gcttgaattttggaaaaatcangagatggagatacttactccttcctccacactgatgtt 1052
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 81283946 gcttgaattttggaaaaatcaggagatggagatacttactccttcctccacactgatgtt 81283887
Query: 1053 ttttagaacccaaaaagcagtgacttttggagttcccttgtgatatagcaggttaatgac 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81283886 ttttagaacccaaaaagcagtgacttttggagttcccttgtgatatagcaggttaatgac 81283827
Query: 1113 ccagcgttgccactgcagccacttgggttgctgccatggcg 1153
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 81283826 ccagcgttgccactgcagccacttgggttgctgccatggcg 81283786
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1 ctctttagggttttcaggaaaccgggaagcggcggcgatggtaggatagcgctgttgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81286760 ctctttagggttttcaggaaaccgggaagcggcggcgatggtaggatagcgctgttgtga 81286701
Query: 61 cggtctccgggtcctctgtgagaggaaacgggagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 81286700 cggtctccgggtcctctgtgagaggaaacgggagg 81286666
>Sscrofa_Chr15
|| Length = 157681621
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 1081 ggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgggt 1140
|||||||||||||||| ||||||||||| || | | |||| ||||||||| ||||||||
Sbjct: 91052738 ggagttcccttgtgatgtagcaggttaaggatcttgtgttgtcactgcagcaacttgggt 91052679
Query: 1141 tgctgccatgg 1151
|||||| ||||
Sbjct: 91052678 tgctgctatgg 91052668
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 1081 ggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgggt 1140
|||||||||||||||| ||||||||||| || | | |||| ||||||||| ||||||||
Sbjct: 91225658 ggagttcccttgtgatgtagcaggttaaggatcttgtgttgtcactgcagcaacttgggt 91225599
Query: 1141 tgctgccatgg 1151
|||||| ||||
Sbjct: 91225598 tgctgctatgg 91225588
>Sscrofa_Chr17
|| Length = 69701581
Score = 67.9 bits (34), Expect = 1e-08
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 1081 ggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgggt 1140
|||||||||||||| || |||||||||| || ||||| ||| ||||||||||||| |||
Sbjct: 24350120 ggagttcccttgtggtacagcaggttaaggatccagcattgtcactgcagccactcaggt 24350179
Query: 1141 tgctgc 1146
||||||
Sbjct: 24350180 tgctgc 24350185
>Sscrofa_Chr01
|| Length = 315321322
Score = 67.9 bits (34), Expect = 1e-08
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 1079 ttggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgg 1138
|||||||||||||||| | || | ||||| || ||||||||| ||||||||| |||||
Sbjct: 80628798 ttggagttcccttgtggtgtaacgagttaaggatccagcgttgtcactgcagcgtcttgg 80628739
Query: 1139 gttgctgccatggc 1152
||||||||||||||
Sbjct: 80628738 gttgctgccatggc 80628725
Score = 65.9 bits (33), Expect = 5e-08
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1080 tggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttggg 1139
||||||||||||||| || |||||||||| || ||||| |||||||||||| ||| | |
Sbjct: 55994690 tggagttcccttgtggtacagcaggttaaggatccagcattgccactgcagagactagtg 55994749
Query: 1140 ttgctgccatggc 1152
||||||| |||||
Sbjct: 55994750 ttgctgctatggc 55994762
Score = 63.9 bits (32), Expect = 2e-07
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1089 cttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgggt 1140
|||||||||||||||||||| || ||||| ||| |||||||||| |||||||
Sbjct: 19638523 cttgtgatatagcaggttaaggatccagcattgtcactgcagccccttgggt 19638574
Score = 60.0 bits (30), Expect = 3e-06
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 1079 ttggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgg 1138
||||| ||| ||||||| ||||| |||||| ||||||| |||| ||||||||| |||||
Sbjct: 286218596 ttggacttctcttgtgacatagcgggttaaggacccagtgttgacactgcagcagcttgg 286218537
Query: 1139 gttgct 1144
||||||
Sbjct: 286218536 gttgct 286218531
>Sscrofa_Chr10
|| Length = 79102373
Score = 65.9 bits (33), Expect = 5e-08
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1082 gagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgggtt 1141
|||||||||||||| | |||||||||| |||||||| ||| ||||||||| ||||||||
Sbjct: 28671072 gagttcccttgtgacacagcaggttaaggacccagctttgtcactgcagcggcttgggtt 28671013
Query: 1142 g 1142
|
Sbjct: 28671012 g 28671012
>Sscrofa_Chr06
|| Length = 157765593
Score = 65.9 bits (33), Expect = 5e-08
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1082 gagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgggtt 1141
|||||| |||||| |||||||||||| || |||| |||| ||||||||| |||||||||
Sbjct: 13022881 gagttctcttgtgtcatagcaggttaaggatccagtgttgtcactgcagcgacttgggtt 13022940
Query: 1142 gctgc 1146
|||||
Sbjct: 13022941 gctgc 13022945
Score = 63.9 bits (32), Expect = 2e-07
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 1079 ttggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcag 1130
|||||||||||||||| ||||||||||||| || |||| |||| ||||||||
Sbjct: 157676188 ttggagttcccttgtggtatagcaggttaaggatccagtgttgtcactgcag 157676137
>Sscrofa_ChrX
|| Length = 144288218
Score = 61.9 bits (31), Expect = 7e-07
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 1081 ggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagc 1131
|||||||||||||||| |||||||||| || ||||||||| |||||||||
Sbjct: 130578684 ggagttcccttgtgatgcagcaggttaaggatccagcgttgtcactgcagc 130578734
Score = 60.0 bits (30), Expect = 3e-06
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1079 ttggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgg 1138
|||||||||||||||| | |||||||||| |||||||| ||| ||||| |||| || |
Sbjct: 103563204 ttggagttcccttgtggtgcagcaggttaaagacccagcattgtcactgtagccgctcag 103563145
Query: 1139 gttgctgccatggc 1152
|||||||| |||||
Sbjct: 103563144 gttgctgctatggc 103563131
>Sscrofa_Chr08
|| Length = 148491826
Score = 61.9 bits (31), Expect = 7e-07
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1079 ttggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcagccacttgg 1138
|||||||||||||||| | ||||||||||||| |||| |||| |||||||| |||||
Sbjct: 88581070 ttggagttcccttgtggcacagcaggttaatgatccagtgttgacactgcagaggcttgg 88581011
Query: 1139 gttgctg 1145
|||||||
Sbjct: 88581010 gttgctg 88581004
>Sscrofa_Chr05
|| Length = 111506441
Score = 60.0 bits (30), Expect = 3e-06
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1081 ggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcag 1130
|||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 106233862 ggagttcccttgtggtatagcaggttaaggatctggcgttgccactgcag 106233813
>Sscrofa_Chr04
|| Length = 143465943
Score = 60.0 bits (30), Expect = 3e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1081 ggagttcccttgtgatatagcaggttaatgacccagcgttgccactgcag 1130
|||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 37741497 ggagttcccttgtggcacagcaggttaatgatccagcattgccactgcag 37741546
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,248,444
Number of extensions: 3264
Number of successful extensions: 3264
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3264
Number of HSP's successfully gapped: 17
Length of query: 1153
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1132
Effective length of database: 2,808,413,156
Effective search space: 3179123692592
Effective search space used: 3179123692592
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)