Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013692
(1132 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852766.1| PREDICTED: similar to SLAM family member 8 prec... 186 5e-47
Alignment gi|NP_001003084.1| signaling lymphocytic activation molecule pr... 59 9e-09
Alignment gi|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Can... 56 7e-08
Alignment gi|XP_545761.2| PREDICTED: similar to CD244 natural killer cell... 54 4e-07
>ref|XP_852766.1| PREDICTED: similar to SLAM family member 8 precursor (B-lymphocyte
activator macrophage-expressed) (BCM-like membrane
protein) [Canis familiaris].
Length = 296
Score = 186 bits (471), Expect = 5e-47
Identities = 95/135 (70%), Positives = 99/135 (73%), Gaps = 4/135 (2%)
Frame = +1
Query: 568 DAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMD 747
D+VPRPVVQVFIA GDA P KTCQVFLSCWAPNISDITYSWRREG D G+EP LF D
Sbjct: 23 DSVPRPVVQVFIAAPGDAHPPKTCQVFLSCWAPNISDITYSWRREGPTDFGIEPSGLFTD 82
Query: 748 RQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREAAPGKA---SYKDAXXXXX 918
Q L VSLGPGDK VAYSCIVSNPVSWDLATVTPWESC REA +A SY+D
Sbjct: 83 GQALRVSLGPGDKSVAYSCIVSNPVSWDLATVTPWESCLREAGMPRARGKSYRDVLLVVL 142
Query: 919 XXXXXXXXAG-LSAW 960
AG LSAW
Sbjct: 143 PVSLLLTLAGLLSAW 157
>ref|NP_001003084.1| signaling lymphocytic activation molecule precursor [Canis lupus
familiaris].
Length = 342
Score = 58.9 bits (141), Expect = 9e-09
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Frame = +1
Query: 460 SLELRPLESG-DSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKT 636
+L LR LES ++ + + +++ LQLK+Y+ V P ++V Q
Sbjct: 102 NLTLRILESRRENEGWYFMTLEENFSVQHFCLQLKLYEQVSTPEIKVL----NWTQENGN 157
Query: 637 CQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSN 816
C + L+C ++ YSW + LG++P LL +SLGP Y C VSN
Sbjct: 158 CSMMLACEVEKGDNVVYSWSEK----LGIDPLIPANSSHLLHLSLGPQHVNNVYVCTVSN 213
Query: 817 PVSWDLATVTPWESCHREAA 876
PVS + PW C E++
Sbjct: 214 PVSNRSWSFNPWSKCRPESS 233
>ref|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Canis familiaris].
Length = 810
Score = 55.8 bits (133), Expect = 7e-08
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 8/198 (4%)
Frame = +1
Query: 322 PGFQVREAIWRCLWPSEELLA----TFFRDSLETLYHSRFLGRTQ-LHSNLSLELRPLES 486
PG Q+ +W + + L+ T R + + HS R LH N SL+L L
Sbjct: 44 PGIQIDSIVWT--FNTTPLITIQPRTPDRQANVIVTHSHNKKRVDFLHGNYSLKLSKLNK 101
Query: 487 GDSGNFSVLLVDKEGR-AWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWA 663
DSG++ V++ + ++Q L+VY+ + +P V + + + TC L+C+
Sbjct: 102 SDSGDYYVVIYSSSFKEPFSQRYGLRVYEHLSKPKVTMGLQNKENG----TCVTNLTCFV 157
Query: 664 -PNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLAT 840
D+TYSW G + + +L +S G G+ + C+ NP+S + +
Sbjct: 158 DQGGEDVTYSWESLG------QAANKSYNGSILPISWRLGKGGMTFICVARNPISSNSSN 211
Query: 841 -VTPWESCHREAAPGKAS 891
V W+ C A ++S
Sbjct: 212 PVFAWKLCEGAADDSESS 229
>ref|XP_545761.2| PREDICTED: similar to CD244 natural killer cell receptor 2B4 [Canis
familiaris].
Length = 285
Score = 53.5 bits (127), Expect = 4e-07
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Frame = +1
Query: 454 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRP-VVQVFIAISGDAQPL 630
NL+L ++ + SG +++ + D+ G+ Q+ ++D + P +++ + + GD
Sbjct: 17 NLALLIKAVRLNHSGCYNLEVTDENGKVDNHYFQVSIFDHIEMPQILKEWRVLEGD---- 72
Query: 631 KTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIV 810
TCQ+FLSC + +++Y+W R L + E + Q+++ S Y+C V
Sbjct: 73 -TCQLFLSCSVSSSGNVSYAWYRGSEL-IQTEMNLTRSEEQVVNDS-------YIYTCNV 123
Query: 811 SNPVSWDLATVTPWESC 861
SNPVS T+ + C
Sbjct: 124 SNPVSSANHTLRLTQGC 140
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,191,051
Number of extensions: 1444854
Number of successful extensions: 5730
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5710
Number of HSP's successfully gapped: 4
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013692
(1132 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192723.1| SLAM family member 8 [Bos taurus]. 406 e-116
Alignment gi|XP_002685919.1| PREDICTED: SLAM family member 8-like [Bos ta... 406 e-116
Alignment gi|NP_776609.2| signaling lymphocytic activation molecule [Bos ... 63 5e-10
Alignment gi|XP_002685905.1| PREDICTED: SLAM family member 9 [Bos taurus]. 56 7e-08
Alignment gi|XP_870066.4| PREDICTED: SLAM family member 9 [Bos taurus]. 56 7e-08
>ref|NP_001192723.1| SLAM family member 8 [Bos taurus].
Length = 280
Score = 406 bits (1044), Expect(2) = e-116
Identities = 204/266 (76%), Positives = 215/266 (80%)
Frame = +1
Query: 202 MAVWSLWSLLLCEALFPXXXXXXXXXXXXXXXALLVAERPPGFQVREAIWRCLWPSEELL 381
MAVWSLWSLLL EAL P ALLVA+ PPGFQVREAIWR LWPSEELL
Sbjct: 1 MAVWSLWSLLLWEALLPMVIASAQVQGQVGGSALLVADHPPGFQVREAIWRSLWPSEELL 60
Query: 382 ATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLK 561
ATFFR S ETLYHSRFLGR QLH+NLSLELRPLESGDSGNFSVLLVDK+GRA TQTLQLK
Sbjct: 61 ATFFRGSPETLYHSRFLGRAQLHTNLSLELRPLESGDSGNFSVLLVDKQGRARTQTLQLK 120
Query: 562 VYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELF 741
VYDAVPRPVV+VFIA+SGDAQP KTC VFLSC APN SDITYSWRREGT+DL +EP LF
Sbjct: 121 VYDAVPRPVVKVFIAVSGDAQPPKTCHVFLSCRAPNTSDITYSWRREGTVDLDMEPAGLF 180
Query: 742 MDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREAAPGKASYKDAXXXXXX 921
D Q+LSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHR+AAPG+ASYKD
Sbjct: 181 TDGQVLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHRQAAPGRASYKDVLLVVVP 240
Query: 922 XXXXXXXAGLSAWCWGPCSXKRKMPV 999
AGLSAW WGP S K+K V
Sbjct: 241 VSLLLILAGLSAWHWGPWSGKKKKDV 266
Score = 31.2 bits (69), Expect(2) = e-116
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 981 EEKDACADEVAPETENPLV 1037
++KD CADEV ETE+PLV
Sbjct: 262 KKKDVCADEVDQETESPLV 280
>ref|XP_002685919.1| PREDICTED: SLAM family member 8-like [Bos taurus].
Length = 280
Score = 406 bits (1044), Expect(2) = e-116
Identities = 204/266 (76%), Positives = 215/266 (80%)
Frame = +1
Query: 202 MAVWSLWSLLLCEALFPXXXXXXXXXXXXXXXALLVAERPPGFQVREAIWRCLWPSEELL 381
MAVWSLWSLLL EAL P ALLVA+ PPGFQVREAIWR LWPSEELL
Sbjct: 1 MAVWSLWSLLLWEALLPMVIASAQVQGQVGGSALLVADHPPGFQVREAIWRSLWPSEELL 60
Query: 382 ATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLK 561
ATFFR S ETLYHSRFLGR QLH+NLSLELRPLESGDSGNFSVLLVDK+GRA TQTLQLK
Sbjct: 61 ATFFRGSPETLYHSRFLGRAQLHTNLSLELRPLESGDSGNFSVLLVDKQGRARTQTLQLK 120
Query: 562 VYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELF 741
VYDAVPRPVV+VFIA+SGDAQP KTC VFLSC APN SDITYSWRREGT+DL +EP LF
Sbjct: 121 VYDAVPRPVVKVFIAVSGDAQPPKTCHVFLSCRAPNTSDITYSWRREGTVDLDMEPAGLF 180
Query: 742 MDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREAAPGKASYKDAXXXXXX 921
D Q+LSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHR+AAPG+ASYKD
Sbjct: 181 TDGQVLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHRQAAPGRASYKDVLLVVVP 240
Query: 922 XXXXXXXAGLSAWCWGPCSXKRKMPV 999
AGLSAW WGP S K+K V
Sbjct: 241 VSLLLILAGLSAWHWGPWSGKKKKDV 266
Score = 31.2 bits (69), Expect(2) = e-116
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 981 EEKDACADEVAPETENPLV 1037
++KD CADEV ETE+PLV
Sbjct: 262 KKKDVCADEVDQETESPLV 280
>ref|NP_776609.2| signaling lymphocytic activation molecule [Bos taurus].
Length = 338
Score = 62.8 bits (151), Expect = 5e-10
Identities = 43/140 (30%), Positives = 62/140 (44%)
Frame = +1
Query: 454 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLK 633
NLSL + D G + + L ++ +LQLK+Y+ V P ++V D
Sbjct: 102 NLSLRILKSRKEDEGWYFISL-EENVSVQHFSLQLKLYEQVSTPQIKVLNTTQEDGN--- 157
Query: 634 TCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVS 813
C + L+C +TY+W E + L + P LL ++LGP Y C VS
Sbjct: 158 -CSLMLACMVEKGDHVTYNWSEEAGVPL-LSPTN---SSHLLYLTLGPQHANNVYICTVS 212
Query: 814 NPVSWDLATVTPWESCHREA 873
NP+S T PW SC A
Sbjct: 213 NPISNSSQTFIPWPSCSSSA 232
>ref|XP_002685905.1| PREDICTED: SLAM family member 9 [Bos taurus].
Length = 336
Score = 55.8 bits (133), Expect = 7e-08
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Frame = +1
Query: 421 SRFLGRTQLHS-NLSLELRPLESGDSGNFSVLLVDKEGR-AWTQTLQLKVYDAVPRPVVQ 594
SR+ GR + + SL++ L D+G++ + + R T+ L VY+ + +P V
Sbjct: 80 SRYWGRLSVVGPDRSLQISHLNWADAGSYRAHINLRSSRLTHTREYSLHVYEPLAQPRVT 139
Query: 595 VFIAISGDAQPLKTCQVFLSCWAPNISD-ITYSWRREGTLDLGVEPGELFMDRQLLSVSL 771
V ISG+ C + L+C A + +TYSW G G + LSVSL
Sbjct: 140 VSTRISGNGH----CLIILTCVAESRGGTVTYSWVPLGPQTTVSHGGSV------LSVSL 189
Query: 772 GPGDKGVAYSCIVSNPVS 825
PGD + ++C+V NPVS
Sbjct: 190 RPGDSALNFTCMVKNPVS 207
>ref|XP_870066.4| PREDICTED: SLAM family member 9 [Bos taurus].
Length = 336
Score = 55.8 bits (133), Expect = 7e-08
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Frame = +1
Query: 421 SRFLGRTQLHS-NLSLELRPLESGDSGNFSVLLVDKEGR-AWTQTLQLKVYDAVPRPVVQ 594
SR+ GR + + SL++ L D+G++ + + R T+ L VY+ + +P V
Sbjct: 80 SRYWGRLSVVGPDRSLQISHLNWADAGSYRAHINLRSSRLTHTREYSLHVYEPLAQPRVT 139
Query: 595 VFIAISGDAQPLKTCQVFLSCWAPNISD-ITYSWRREGTLDLGVEPGELFMDRQLLSVSL 771
V ISG+ C + L+C A + +TYSW G G + LSVSL
Sbjct: 140 VSTRISGNGH----CLIILTCVAESRGGTVTYSWVPLGPQTTVSHGGSV------LSVSL 189
Query: 772 GPGDKGVAYSCIVSNPVS 825
PGD + ++C+V NPVS
Sbjct: 190 RPGDSALNFTCMVKNPVS 207
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,324,996
Number of extensions: 1407763
Number of successful extensions: 5769
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5742
Number of HSP's successfully gapped: 7
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013692
(1132 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125716.1| PREDICTED: SLAM family member 8-like isoform... 513 e-152
Alignment gi|XP_003125717.1| PREDICTED: SLAM family member 8-like isoform... 513 e-151
Alignment gi|XP_003125718.1| PREDICTED: SLAM family member 8-like isoform... 429 e-127
Alignment gi|NP_001230749.1| signaling lymphocytic activation molecule fa... 60 3e-09
Alignment gi|XP_001928360.1| PREDICTED: natural killer cell receptor 2B4-... 56 4e-08
Alignment gi|XP_001927671.2| PREDICTED: signaling lymphocytic activation ... 51 1e-06
Alignment gi|XP_001928448.2| PREDICTED: t-lymphocyte surface antigen Ly-9... 50 2e-06
>ref|XP_003125716.1| PREDICTED: SLAM family member 8-like isoform 1 [Sus scrofa].
Length = 295
Score = 513 bits (1321), Expect(2) = e-152
Identities = 249/279 (89%), Positives = 250/279 (89%)
Frame = +1
Query: 154 MCWILVVEGAHLPLWSMAVWSLWSLLLCEALFPXXXXXXXXXXXXXXXALLVAERPPGFQ 333
MCWILVVEGAHLPLWSMAVWSLWSLLLCEALFP ALLVAERPPGFQ
Sbjct: 1 MCWILVVEGAHLPLWSMAVWSLWSLLLCEALFPVVVTSVQVQGQVGGSALLVAERPPGFQ 60
Query: 334 VREAIWRCLWPSEELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL 513
VREAIWRCLWPSEELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL
Sbjct: 61 VREAIWRCLWPSEELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL 120
Query: 514 LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW 693
LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW
Sbjct: 121 LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW 180
Query: 694 RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA 873
RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA
Sbjct: 181 RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA 240
Query: 874 APGKASYKDAXXXXXXXXXXXXXAGLSAWCWGPCSXKRK 990
APGKASYKDA AGLSAWCWGPCS K+K
Sbjct: 241 APGKASYKDALLVVVPVLLLLILAGLSAWCWGPCSGKKK 279
Score = 43.5 bits (101), Expect(2) = e-152
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +3
Query: 966 GPLLXEEKDACADEVAPETENPLV 1037
GP ++KDACADEVAPETENPLV
Sbjct: 272 GPCSGKKKDACADEVAPETENPLV 295
>ref|XP_003125717.1| PREDICTED: SLAM family member 8-like isoform 2 [Sus scrofa].
Length = 296
Score = 513 bits (1321), Expect(2) = e-151
Identities = 249/279 (89%), Positives = 250/279 (89%)
Frame = +1
Query: 154 MCWILVVEGAHLPLWSMAVWSLWSLLLCEALFPXXXXXXXXXXXXXXXALLVAERPPGFQ 333
MCWILVVEGAHLPLWSMAVWSLWSLLLCEALFP ALLVAERPPGFQ
Sbjct: 1 MCWILVVEGAHLPLWSMAVWSLWSLLLCEALFPVVVTSVQVQGQVGGSALLVAERPPGFQ 60
Query: 334 VREAIWRCLWPSEELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL 513
VREAIWRCLWPSEELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL
Sbjct: 61 VREAIWRCLWPSEELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL 120
Query: 514 LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW 693
LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW
Sbjct: 121 LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW 180
Query: 694 RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA 873
RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA
Sbjct: 181 RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA 240
Query: 874 APGKASYKDAXXXXXXXXXXXXXAGLSAWCWGPCSXKRK 990
APGKASYKDA AGLSAWCWGPCS K+K
Sbjct: 241 APGKASYKDALLVVVPVLLLLILAGLSAWCWGPCSGKKK 279
Score = 40.0 bits (92), Expect(2) = e-151
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +3
Query: 981 EEKDACADEVAPETENPLV 1037
++KDACADEVAPETENPLV
Sbjct: 278 KKKDACADEVAPETENPLV 296
>ref|XP_003125718.1| PREDICTED: SLAM family member 8-like isoform 3 [Sus scrofa].
Length = 252
Score = 429 bits (1104), Expect(2) = e-127
Identities = 219/279 (78%), Positives = 221/279 (79%)
Frame = +1
Query: 154 MCWILVVEGAHLPLWSMAVWSLWSLLLCEALFPXXXXXXXXXXXXXXXALLVAERPPGFQ 333
MCWILVVEGAHLPLWSMAVWSLWS LL+ E
Sbjct: 1 MCWILVVEGAHLPLWSMAVWSLWS-------------------------LLLCE------ 29
Query: 334 VREAIWRCLWPSEELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL 513
EELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL
Sbjct: 30 ------------EELLATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVL 77
Query: 514 LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW 693
LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW
Sbjct: 78 LVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSW 137
Query: 694 RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA 873
RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA
Sbjct: 138 RREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREA 197
Query: 874 APGKASYKDAXXXXXXXXXXXXXAGLSAWCWGPCSXKRK 990
APGKASYKDA AGLSAWCWGPCS K+K
Sbjct: 198 APGKASYKDALLVVVPVLLLLILAGLSAWCWGPCSGKKK 236
Score = 43.5 bits (101), Expect(2) = e-127
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +3
Query: 966 GPLLXEEKDACADEVAPETENPLV 1037
GP ++KDACADEVAPETENPLV
Sbjct: 229 GPCSGKKKDACADEVAPETENPLV 252
>ref|NP_001230749.1| signaling lymphocytic activation molecule family member 1 [Sus
scrofa].
Length = 339
Score = 59.7 bits (143), Expect = 3e-09
Identities = 41/136 (30%), Positives = 61/136 (44%)
Frame = +1
Query: 454 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLK 633
N+SL + + D G + L +++ LQLK+Y+ V RP ++V Q
Sbjct: 103 NMSLSILESKKEDEGWY-FLSLEENVSVQQFCLQLKLYEQVSRPEIKVL----NSTQENG 157
Query: 634 TCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVS 813
C + L+C +TYSW +EG + L P LL ++LGP Y C +
Sbjct: 158 NCSLMLACMVEKGDHVTYSWSQEGGVILP-SPANC---SHLLYLTLGPQHADNVYICTAN 213
Query: 814 NPVSWDLATVTPWESC 861
NP+S T PW C
Sbjct: 214 NPISNRSQTFIPWSRC 229
>ref|XP_001928360.1| PREDICTED: natural killer cell receptor 2B4-like [Sus scrofa].
Length = 369
Score = 55.8 bits (133), Expect = 4e-08
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Frame = +1
Query: 454 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLK 633
+L+L ++ + DSG + + + + G+ W Q+ V+D V +P +Q
Sbjct: 96 DLTLLIKAAQPWDSGLYCLEITNDSGKIWKFEFQVSVFDHVEKPHLQE----QWKTLDRG 151
Query: 634 TCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGV-AYSCIV 810
CQV LSC +I+Y+W + G L + R L + D G+ Y+C V
Sbjct: 152 VCQVTLSCSVSRGDNISYAWYKGGEL--------IQTPRNLTKLEEQIDDNGLHIYTCNV 203
Query: 811 SNPVSWDLATVTPWESC 861
SNPVSW T+ + C
Sbjct: 204 SNPVSWANHTLHLTQGC 220
>ref|XP_001927671.2| PREDICTED: signaling lymphocytic activation molecule-like [Sus
scrofa].
Length = 322
Score = 50.8 bits (120), Expect = 1e-06
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Frame = +1
Query: 427 FLGRTQLHSNLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIA 606
F R L L +R L SG ++ + + G++ +T +L +Y+ +P P +Q+
Sbjct: 98 FKCRFSLTEMAFLSIRNLTMEMSGLYTARIKFRSGKSQEETFRLCLYEPIPHPQIQIHSL 157
Query: 607 ISGDAQPLKTCQVFLSCWAP-NISDITYSWRREGTLDLGVEPGEL--FMDRQLLSVSLGP 777
+ C + L C P N ++ +W+ +G + G L + LS+SL
Sbjct: 158 SNTSGW----CHISLECGTPGNTGNLMVTWQSQGLPKELEQSGTLGPSPSSRNLSLSLPL 213
Query: 778 GDKGVAYSCIVSNPVSWDLATVTPWESCHREAAPGKAS 891
+C+VSNPV T+ C R PG A+
Sbjct: 214 SHFNSRLTCVVSNPVDEKKETLYLESICPRRVVPGSAA 251
>ref|XP_001928448.2| PREDICTED: t-lymphocyte surface antigen Ly-9 isoform 2 [Sus
scrofa].
Length = 453
Score = 50.4 bits (119), Expect = 2e-06
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Frame = +1
Query: 460 SLELRPLESGDSGNFSVLLVDKEGRA-WTQTLQLKVYDAVPRPVVQVFIAISGDAQPLKT 636
SL++ L D+G + + + T L VY+ + RP V + ISG+
Sbjct: 97 SLQISHLSWEDAGPYQAHINLRNSHIPHTWEYSLNVYEQLARPRVTMSSRISGNGH---- 152
Query: 637 CQVFLSCWAPNISD-ITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVS 813
C V L+C A + +TYSW G + G + LSVSL PGD + ++C+V
Sbjct: 153 CLVILTCVAESRGGTVTYSWTPLGPRTVVSHGGSV------LSVSLRPGDGALNFTCMVK 206
Query: 814 NPVS 825
NPVS
Sbjct: 207 NPVS 210
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,568,777
Number of extensions: 908547
Number of successful extensions: 3636
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3616
Number of HSP's successfully gapped: 11
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013692
(1132 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083360.2| SLAM family member 8 precursor [Mus musculus]. 349 8e-99
Alignment gi|NP_083888.3| SLAM family member 9 precursor [Mus musculus]. 50 4e-06
Alignment gi|XP_001003781.1| PREDICTED: natural killer cell receptor 2B4 ... 50 4e-06
Alignment gi|NP_653122.2| SLAM family member 7 precursor [Mus musculus]. 49 7e-06
Alignment gi|NP_849230.1| HEPACAM family member 2 precursor [Mus musculus]. 49 9e-06
>ref|NP_083360.2| SLAM family member 8 precursor [Mus musculus].
Length = 278
Score = 349 bits (895), Expect(2) = 8e-99
Identities = 177/262 (67%), Positives = 192/262 (73%), Gaps = 1/262 (0%)
Frame = +1
Query: 208 VWSLWSLLLCEALFPXXXXXXXXXXXXXXXALLVAERPPGFQVREAIWRCLWPSEELLAT 387
+WSLWSLLL EAL P LLVAE PPGFQVREAIWR LWPSEELLAT
Sbjct: 1 MWSLWSLLLFEALLPVVVVSVQVLSKVGDSELLVAECPPGFQVREAIWRSLWPSEELLAT 60
Query: 388 FFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVY 567
FFR SLETLYHSRFLGR QL+ NLSLEL PL+ GDSGNFSVL+VD G+ WTQTL LKVY
Sbjct: 61 FFRGSLETLYHSRFLGRVQLYDNLSLELGPLKPGDSGNFSVLMVDTRGQTWTQTLYLKVY 120
Query: 568 DAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMD 747
DAVP+P VQVF A + + QPL TCQVFLSCWAPNISDITYSWRREGT+D E F +
Sbjct: 121 DAVPKPEVQVFTAAAEETQPLNTCQVFLSCWAPNISDITYSWRREGTVDFNGEVHSHFSN 180
Query: 748 RQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREAAPGKASYKDAXXXXXXXX 927
Q+LSVSLG GDK VA++CI SNPVSWD+ TVTPWESCH EAA GKASYKD
Sbjct: 181 GQVLSVSLGLGDKDVAFTCIASNPVSWDMTTVTPWESCHHEAASGKASYKDVLLVVVPIT 240
Query: 928 XXXXXAGL-SAWCWGPCSXKRK 990
AGL AW G CS K+K
Sbjct: 241 LFLILAGLFGAWHHGLCSGKKK 262
Score = 30.8 bits (68), Expect(2) = 8e-99
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 981 EEKDACADEVAPETENPLV 1037
++KDAC D V PETEN LV
Sbjct: 260 KKKDACTDGVLPETENALV 278
>ref|NP_083888.3| SLAM family member 9 precursor [Mus musculus].
Length = 285
Score = 49.7 bits (117), Expect = 4e-06
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = +1
Query: 424 RFLGRTQL-HSNLSLELRPLESGDSG--NFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQ 594
R+ GR + S+ SL + L DSG N V L E T++ L+VY + +P +
Sbjct: 79 RYRGRVSISESSYSLHISNLTWEDSGLYNAQVNLKTSESHI-TKSYHLRVYRRLSKPHIT 137
Query: 595 VFIAISGDAQPLKTCQVFLSCWAPNIS-DITYSWRREGTLDLGVEPGELFMDRQLLSVSL 771
V IS + C + L+C D+TY W G + LS S
Sbjct: 138 VNSNISEEG----VCNISLTCSIERAGMDVTYIWLSSQDSTNTSHEGSV------LSTSW 187
Query: 772 GPGDKGVAYSCIVSNPVS 825
PGDK +Y+C VSNP+S
Sbjct: 188 RPGDKAPSYTCRVSNPIS 205
>ref|XP_001003781.1| PREDICTED: natural killer cell receptor 2B4 isoform 2 [Mus
musculus].
Length = 398
Score = 49.7 bits (117), Expect = 4e-06
Identities = 36/138 (26%), Positives = 63/138 (45%)
Frame = +1
Query: 448 HSNLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQP 627
+ + +L ++ + DSG++ + L + G T+ Q+ + D V P ++ +A
Sbjct: 90 YGDFALSIKSAQLQDSGHYLLELTYRNGTVCTKNFQILILDHVETPHLKA----QWNAWT 145
Query: 628 LKTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCI 807
TCQ+FLSC P +++Y+ R TL + + + Q + SL Y+C
Sbjct: 146 NGTCQLFLSCSVPKDDNVSYALYRGSTL-ISNQRNSTHWENQTDASSLH------TYTCN 198
Query: 808 VSNPVSWDLATVTPWESC 861
VSN SW T+ C
Sbjct: 199 VSNRASWANHTLNFTHGC 216
>ref|NP_653122.2| SLAM family member 7 precursor [Mus musculus].
Length = 333
Score = 48.9 bits (115), Expect = 7e-06
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Frame = +1
Query: 460 SLELRPLESGDSGNFSVLLVDKEGRA-WTQTLQLKVYDAVPRPVVQVFIAISGDAQPLK- 633
S++L L+ DSG + + +A Q L VY + RP V + D Q K
Sbjct: 86 SMKLSQLKKNDSGAYRAEIYSTSSQASLIQEYVLHVYKHLSRPKVTI------DRQSNKN 139
Query: 634 -TCQVFLSCWAPNISD-ITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCI 807
TC + L+C + +TYSW+ G D F D LS++ G+K A +C+
Sbjct: 140 GTCVINLTCSTDQDGENVTYSWKAVGQGD------NQFHDGATLSIAWRSGEKDQALTCM 193
Query: 808 VSNPVSWDLAT-VTPWESCHREA 873
NPVS +T V P + C A
Sbjct: 194 ARNPVSNSFSTPVFPQKLCEDAA 216
>ref|NP_849230.1| HEPACAM family member 2 precursor [Mus musculus].
Length = 463
Score = 48.5 bits (114), Expect = 9e-06
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Frame = +1
Query: 439 TQLHSNLSLELRPLESGDSGNFSVLLVDKEGR---AWTQTLQLKVYDAVPRPVVQVFIAI 609
T + N SL + PL+ D GN+ ++ V+ +G + +Q +Q+ V D V +P+VQ F
Sbjct: 100 TMMPPNASLLINPLQFTDEGNY-IVKVNIQGNGTLSASQKIQVTVDDPVMKPMVQ-FHPA 157
Query: 610 SGDAQPLKTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELF--MDRQLLSVSLGPGD 783
SG + + + L+C + + Y WR+ G + + F + L V + D
Sbjct: 158 SGAVEYVG--NITLTCQVEGGTRLVYQWRKSGK-PISINSSHSFSPQNNTLWIVPVTKED 214
Query: 784 KGVAYSCIVSNPVS 825
G Y+C+VSNPVS
Sbjct: 215 IG-NYTCLVSNPVS 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,734,492
Number of extensions: 1178898
Number of successful extensions: 4612
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4596
Number of HSP's successfully gapped: 6
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013692
(1132 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064510.1| SLAM family member 8 precursor [Homo sapiens]. 385 e-107
Alignment gi|NP_003028.1| signaling lymphocytic activation molecule precu... 65 2e-10
Alignment gi|NP_057466.1| natural killer cell receptor 2B4 isoform 1 prec... 57 2e-08
Alignment gi|NP_001160135.1| natural killer cell receptor 2B4 isoform 2 p... 53 5e-07
>ref|NP_064510.1| SLAM family member 8 precursor [Homo sapiens].
Length = 285
Score = 385 bits (988), Expect = e-107
Identities = 193/267 (72%), Positives = 205/267 (76%), Gaps = 1/267 (0%)
Frame = +1
Query: 202 MAVWSLWSLLLCEALFPXXXXXXXXXXXXXXXALLVAERPPGFQVREAIWRCLWPSEELL 381
M + LWSLLL EAL P LLVA RPPGFQVREAIWR LWPSEELL
Sbjct: 1 MVMRPLWSLLLWEALLPITVTGAQVLSKVGGSVLLVAARPPGFQVREAIWRSLWPSEELL 60
Query: 382 ATFFRDSLETLYHSRFLGRTQLHSNLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLK 561
ATFFR SLETLYHSRFLGR QLHSNLSLEL PLESGDSGNFSVL+VD G+ WTQTLQLK
Sbjct: 61 ATFFRGSLETLYHSRFLGRAQLHSNLSLELGPLESGDSGNFSVLMVDTRGQPWTQTLQLK 120
Query: 562 VYDAVPRPVVQVFIAISGDAQPLKTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELF 741
VYDAVPRPVVQVFIA+ DAQP KTCQVFLSCWAPNIS+ITYSWRRE T+D G+EP LF
Sbjct: 121 VYDAVPRPVVQVFIAVERDAQPSKTCQVFLSCWAPNISEITYSWRRETTMDFGMEPHSLF 180
Query: 742 MDRQLLSVSLGPGDKGVAYSCIVSNPVSWDLATVTPWESCHREAAPGKASYKDAXXXXXX 921
D Q+LS+SLGPGD+ VAYSCIVSNPVSWDLATVTPW+SCH EAAPGKASYKD
Sbjct: 181 TDGQVLSISLGPGDRDVAYSCIVSNPVSWDLATVTPWDSCHHEAAPGKASYKDVLLVVVP 240
Query: 922 XXXXXXXAGL-SAWCWGPCSXKRKMPV 999
L SAW W PCS K+K V
Sbjct: 241 VSLLLMLVTLFSAWHWCPCSGKKKKDV 267
>ref|NP_003028.1| signaling lymphocytic activation molecule precursor [Homo sapiens].
Length = 335
Score = 64.7 bits (156), Expect = 2e-10
Identities = 42/144 (29%), Positives = 64/144 (44%)
Frame = +1
Query: 454 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLK 633
NL+L +R D G + ++ ++K LQL++Y+ V P ++V Q
Sbjct: 102 NLTLGIRESRKEDEGWY-LMTLEKNVSVQRFCLQLRLYEQVSTPEIKVL----NKTQENG 156
Query: 634 TCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVS 813
TC + L C + YSW + G P LLS++LGP Y C VS
Sbjct: 157 TCTLILGCTVEKGDHVAYSWSEKA----GTHPLNPANSSHLLSLTLGPQHADNIYICTVS 212
Query: 814 NPVSWDLATVTPWESCHREAAPGK 885
NP+S + T +PW C + + K
Sbjct: 213 NPISNNSQTFSPWPGCRTDPSETK 236
>ref|NP_057466.1| natural killer cell receptor 2B4 isoform 1 precursor [Homo
sapiens].
Length = 365
Score = 57.4 bits (137), Expect = 2e-08
Identities = 39/136 (28%), Positives = 65/136 (47%)
Frame = +1
Query: 454 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLK 633
NLSL ++ + DSG + + + G+ T T Q+ V+D V +P +Q G
Sbjct: 89 NLSLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFDKVEKPRLQG----QGKILDRG 144
Query: 634 TCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVS 813
CQV LSC +++Y+W R G+ + ++D ++ + Y+C VS
Sbjct: 145 RCQVALSCLVSRDGNVSYAWYR-GSKLIQTAGNLTYLDEEV------DINGTHTYTCNVS 197
Query: 814 NPVSWDLATVTPWESC 861
NPVSW+ T+ + C
Sbjct: 198 NPVSWESHTLNLTQDC 213
>ref|NP_001160135.1| natural killer cell receptor 2B4 isoform 2 precursor [Homo
sapiens].
Length = 370
Score = 53.1 bits (126), Expect = 5e-07
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Frame = +1
Query: 454 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAV-PRPVVQVFIAISGDAQPL 630
NLSL ++ + DSG + + + G+ T T Q+ V++++ P V + + G
Sbjct: 89 NLSLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFESLLPDKVEKPRLQGQGKILDR 148
Query: 631 KTCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGV-AYSCI 807
CQV LSC +++Y+W R L + ++D ++ G Y+C
Sbjct: 149 GRCQVALSCLVSRDGNVSYAWYRGSKL-IQTAGNLTYLDEEV-------DINGTHTYTCN 200
Query: 808 VSNPVSWDLATVTPWESC 861
VSNPVSW+ T+ + C
Sbjct: 201 VSNPVSWESHTLNLTQDC 218
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,309,804
Number of extensions: 1415153
Number of successful extensions: 5587
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5554
Number of HSP's successfully gapped: 4
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013692
(1132 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 652 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 652 bits (329), Expect = 0.0
Identities = 329/329 (100%)
Strand = Plus / Minus
Query: 240 agcactatttcccgtcgttgtcaccagtgtccaagtgcagggccaggtggggggctcagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98830562 agcactatttcccgtcgttgtcaccagtgtccaagtgcagggccaggtggggggctcagc 98830503
Query: 300 cctgctggtggcagaacgccctcctggcttccaagtccgtgaggccatctggagatgtct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98830502 cctgctggtggcagaacgccctcctggcttccaagtccgtgaggccatctggagatgtct 98830443
Query: 360 ctggccttcagaggagctcctggccacgtttttccgggactccctggagactctttacca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98830442 ctggccttcagaggagctcctggccacgtttttccgggactccctggagactctttacca 98830383
Query: 420 ctcccgcttcctgggcagaacccaactgcacagcaacctcagcctggagctccggccgct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98830382 ctcccgcttcctgggcagaacccaactgcacagcaacctcagcctggagctccggccgct 98830323
Query: 480 ggagtctggagacagcggcaacttctccgtgctattggtggacaaggaaggtcgggcctg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98830322 ggagtctggagacagcggcaacttctccgtgctattggtggacaaggaaggtcgggcctg 98830263
Query: 540 gacacagactctgcagctcaaggtgtatg 568
|||||||||||||||||||||||||||||
Sbjct: 98830262 gacacagactctgcagctcaaggtgtatg 98830234
Score = 609 bits (307), Expect = e-171
Identities = 307/307 (100%)
Strand = Plus / Minus
Query: 568 gatgcagtgcccaggcccgtggtgcaagtgttcattgccatatcaggggatgctcagccc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98826653 gatgcagtgcccaggcccgtggtgcaagtgttcattgccatatcaggggatgctcagccc 98826594
Query: 628 ctcaagacctgtcaagtgttcctgtcctgttgggcccccaacatcagcgacataacctat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98826593 ctcaagacctgtcaagtgttcctgtcctgttgggcccccaacatcagcgacataacctat 98826534
Query: 688 agctggcgacgggaggggactcttgaccttggtgtcgagccaggtgaacttttcatggat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98826533 agctggcgacgggaggggactcttgaccttggtgtcgagccaggtgaacttttcatggat 98826474
Query: 748 agacagctgctgagcgtctcactgggaccaggagacaaaggcgtggcctattcctgcatc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98826473 agacagctgctgagcgtctcactgggaccaggagacaaaggcgtggcctattcctgcatc 98826414
Query: 808 gtctcaaaccctgtcagctgggacttggccaccgtcaccccctgggagagctgccatcgg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98826413 gtctcaaaccctgtcagctgggacttggccaccgtcaccccctgggagagctgccatcgg 98826354
Query: 868 gaggcag 874
|||||||
Sbjct: 98826353 gaggcag 98826347
Score = 478 bits (241), Expect = e-132
Identities = 241/241 (100%)
Strand = Plus / Minus
Query: 1 ctgatagagtccagctagtctcgaggccaacttccactttcctctggatgttttcacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98833671 ctgatagagtccagctagtctcgaggccaacttccactttcctctggatgttttcacttt 98833612
Query: 61 tggggcatcttgttctgagtcaagattccttcttctgaacacgggactttccaaaaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98833611 tggggcatcttgttctgagtcaagattccttcttctgaacacgggactttccaaaaggac 98833552
Query: 121 cacagctccttccgtgtatccactcaacttgggatgtgttggattttggttgttgaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98833551 cacagctccttccgtgtatccactcaacttgggatgtgttggattttggttgttgaggga 98833492
Query: 181 gctcacctgcctctctggagtatggccgtgtggtccctgtggagtctacttctctgcgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98833491 gctcacctgcctctctggagtatggccgtgtggtccctgtggagtctacttctctgcgaa 98833432
Query: 241 g 241
|
Sbjct: 98833431 g 98833431
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 872 cagccccagggaaggcctcctacaaagatgcactgctggtggtggtgcccgtcttgctgc 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98826262 cagccccagggaaggcctcctacaaagatgcactgctggtggtggtgcccgtcttgctgc 98826203
Query: 932 tcctgatcctggctggtctctctgcctggtgctggggcccctgctca 978
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98826202 tcctgatcctggctggtctctctgcctggtgctggggcccctgctca 98826156
Score = 176 bits (89), Expect = 2e-41
Identities = 94/96 (97%)
Strand = Plus / Minus
Query: 985 agaaagatgcctgtgctgacgaagtggctccagagacagagaatcctcttgtgtagggtg 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98824606 agaaagatgcctgtgctgacgaagtggctccagagacagagaatcctcttgtgtagggtg 98824547
Query: 1045 ggccttgagggnagaaagaaacgaagcctggatggt 1080
||||||||||| |||||||||||||||||||||||
Sbjct: 98824546 ggccttgagggaggaaagaaacgaagcctggatggt 98824511
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/58 (94%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 1078 ggtcctggctctgctctgggc-acatgggcctagaaggac-tcccctc-aggatgctg 1132
||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 98824045 ggtcctggctctgctctgggcaacatgggcctagaaggacatcccctcaaggatgctg 98823988
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,423,087
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 6
Length of query: 1132
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1111
Effective length of database: 2,808,413,156
Effective search space: 3120147016316
Effective search space used: 3120147016316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)